Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_004302	948	991	44	2 [1]	[1] 2	r1tp01	Integrase

TTATTTAGCGCTCTTTGATAAGAAGATGCTGTTATTTCGGAAATTAAAACATTTGGCATATAGGTTTTTAAATATTTTAACGTTTGCTCATA  >  NC_004302/878‑969                                                                      |                       ttatttaGCGCTCTTTGATAAGAAGATGCTGTTATTTCGGAAATTAAAACATTTGGCATATAGGTCTTTagcacc                   <  1:10093323/75‑6 (MQ=255)                  aTAAGAAGATGCTGTTGTTTCGGAAATTAAAACATTTGGCATATAGGTTTTTAAATATTTTAACGTCTGCTCaac  <  1:1932529/75‑3 (MQ=255)                                                                      |                       TTATTTAGCGCTCTTTGATAAGAAGATGCTGTTATTTCGGAAATTAAAACATTTGGCATATAGGTTTTTAAATATTTTAACGTTTGCTCATA  >  NC_004302/878‑969

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑