Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_004302	25275	25352	78	3 [1]	[0] 2	r1tp42	ORF42

AAGTATTAGGCGCATTTATCGGTGGAGTATTAAAAGGAGCAATGCTCGCACTATCAGCAACTTTTGACACTATTCGTGTTGTAGTCGGATTTCTTACTCCAATAATTGCTGCCGTTTTAGCTAAA  >  NC_004302/25200‑25324                                                                           |                                                   aaGTAATAGGCACATTTATCGGTGGAGTATTAAAAGGAGCAATGCTCGCACTATCAGCAACTTTTGACACTATTc                                                    >  1:3283129/1‑75 (MQ=255) aaGTAATAGGCACATTTATCGGTGGAGTATTAAAAGGAGCAATGCTCGCACTATCAGCAACTTTTGACACTATTc                                                    >  1:52946/1‑75 (MQ=255)                                                   tggtCAGCAACTTTTGACACTATTCGTGTTGTAGTCGGATTTCTTACTCCAATAATTGCTGCCGTTTTAGCTaaa  >  1:9031684/4‑75 (MQ=255)                                                                           |                                                   AAGTATTAGGCGCATTTATCGGTGGAGTATTAAAAGGAGCAATGCTCGCACTATCAGCAACTTTTGACACTATTCGTGTTGTAGTCGGATTTCTTACTCCAATAATTGCTGCCGTTTTAGCTAAA  >  NC_004302/25200‑25324

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑