Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_004302	1063	1070	8	2 [1]	[1] 2	r1tp01	Integrase

TCCTTTTTTTAGTTTGCTTTCAATATCCATTGCTTCAGCTTGTGCATCGGACTTTGTAG‑AAAAACCACCCTTTGTT  >  NC_004302/1069‑1144   |                                                                           tCCTTTTTTTAGTTTGCTTTCAATATCCATTGCTTCAGCTTGTGCATCGGACTTTGTAG‑AAAAATCAcccagaat   <  1:7670555/75‑6 (MQ=255)   cTTTTTTTAGTTTGCTTTCAATATCCATTGCTTCAGCTTGTGCATCGGACTTTGTAGAAAAAACCAcccagtaca  <  1:10634251/75‑7 (MQ=255)   |                                                                           TCCTTTTTTTAGTTTGCTTTCAATATCCATTGCTTCAGCTTGTGCATCGGACTTTGTAG‑AAAAACCACCCTTTGTT  >  NC_004302/1069‑1144

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑