Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_004302	948	991	44	2 [1]	[1] 2	r1tp01	Integrase

AATTGCATTTTTCTTATAAAGTTCCATCCAGTCTTTAAAATATTCGGAAATTTCTTGCTTAATGGGGTCAACAATAA  >  NC_004302/991‑1067  |                                                                            aaTTGCTTTTTTCTTATAAAGTTCCATCCAGTCTTTAAAATATTCGGAAATTTCTTGCTTAATGGAGTCAACAAt    <  1:8703216/75‑1 (MQ=255)  aTTGCATTTTTCTTATAAAGTTCCATCCAGTCTTTAAAATATTCGGAAATTTCTTGCTTAAT‑GGGTcaacgctta  <  1:10165363/75‑6 (MQ=255)  |                                                                            AATTGCATTTTTCTTATAAAGTTCCATCCAGTCTTTAAAATATTCGGAAATTTCTTGCTTAATGGGGTCAACAATAA  >  NC_004302/991‑1067

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑