Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_004302	1256	1333	78	2 [1]	[1] 3	r1tp01/r1tp02	Integrase/ORF2

ACTTGAGCGGATTTTTTTGTTTATTTAACTACACCATTATTGAAATCTAAATACATTACCCAGCCGTCAGACATCATTACACCATCGCCT  >  NC_004302/1319‑1408                |                                                                           aCTTGAGCGGATTTTTTTGTTTATTTAACTACACCATTATTGAAATCTAAATACATTACCCAGCCGTCAGaacca                 <  1:11452028/75‑5 (MQ=255)                tttGTTTATTTAACTACACCATTATTGAAATCTAAATACATTACCCAGCCGTCAGACATCATTACCCCaaatcgt  <  1:5769427/75‑7 (MQ=255)                tttGTTTATTTAACTACACCATTATTGAAATCTAAATACATTACCCAGCCGTCAGACATCATTACAccctcccaa  <  1:10464384/75‑8 (MQ=255)                |                                                                           ACTTGAGCGGATTTTTTTGTTTATTTAACTACACCATTATTGAAATCTAAATACATTACCCAGCCGTCAGACATCATTACACCATCGCCT  >  NC_004302/1319‑1408

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑