Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_004302	1256	1333	78	2 [1]	[1] 3	r1tp01/r1tp02	Integrase/ORF2

CAAGTTTTACCACGCTTTTGATATGTAGCCATATTTGCTTTTTATACCTCATTTCTGATAAAATGGTATAGTAAAAAGCTTGTTAAAAGC  >  NC_004302/1187‑1276                                                                     |                      cAAGTTTTACCACGCTTTTGATATGTAGCCATATTTGCTTTTTATACCTCATTTCTGATAAAATGatatttggct                 <  1:5872542/75‑7 (MQ=255)                ttttGATATGTAGCCATATTTGCTTTTTATACCTCATTTCTGATAAAATGGTATAGTAAAAAGCTTGtgttattc  <  1:9008209/75‑8 (MQ=255)                                                                     |                      CAAGTTTTACCACGCTTTTGATATGTAGCCATATTTGCTTTTTATACCTCATTTCTGATAAAATGGTATAGTAAAAAGCTTGTTAAAAGC  >  NC_004302/1187‑1276

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑