Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_004302	25275	25352	78	3 [1]	[0] 2	r1tp42	ORF42

AACTGTGGCTCAATGGGTTGGTACGGCAATTGGTTTCTTTGCAAACTTTGGGGCAGCTGGTACATCACTCAAAGG  >  NC_004302/25351‑25425   |                                                                         ggcTGTGGCCCAATGGGTTGGTACGGCAATTGGTTTCTTTGCAAACTTTGGGGCAGCTGGTACATCACGCAAAgg  >  1:1160877/3‑75 (MQ=255) ggcTGTGGCCCAATGGGTTGGTACGGCAATTGGTTTCTTTGCAAACTTTGGGGCAGCTGGTACATCACGCAAAgg  >  1:3894467/3‑75 (MQ=255)   |                                                                         AACTGTGGCTCAATGGGTTGGTACGGCAATTGGTTTCTTTGCAAACTTTGGGGCAGCTGGTACATCACTCAAAGG  >  NC_004302/25351‑25425

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑