Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_004302	238	283	46	2 [1]	[1] 2	r1tp01	Integrase

TAGGTTTGCTGTGTGATAGCCACACTTGCGTGTCCTAGGCGTTTTGAAACAGTCATGATATCAAC‑TCCATGATAGAGGAGAACAGAAGCATGAGTATGCCTTAAACC  >  NC_004302/164‑270                                                                           |                                  taGGTTTGCTGTGTGATAGCCACACTTGCGTGTCCTAGGCGTTTTGAAACAGTCATGATATCAACATCCATGATa                                   <  1:9127438/75‑1 (MQ=255)                                 tCCTAGGCGTTTTGAAACAGTCATGATATCAAC‑TCCATGATAGAGGAGAACAGAAGCATGAGTATGCCtgccaca  <  1:7062073/75‑7 (MQ=255)                                                                           |                                  TAGGTTTGCTGTGTGATAGCCACACTTGCGTGTCCTAGGCGTTTTGAAACAGTCATGATATCAAC‑TCCATGATAGAGGAGAACAGAAGCATGAGTATGCCTTAAACC  >  NC_004302/164‑270

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑