Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_004302	22996	23012	17	2 [1]	[0] 2	r1tp40	ORF40

AGGAGCAGCACTTGGTAAATTAATTTCTTCATCACTTTCTGAAGGAGCTGATTTACAACAATCATTAGGTGGGGT  >  NC_004302/23013‑23087 |                                                                           aGGAGCAGCACTTGGTAAATTAATTTCTTCATCACTTTCTGAAGGAGCTGATTTACAACAATCATTAGGTggatc  <  1:12025299/75‑4 (MQ=255) aGGAGCAGCACTTGGTAAATTAATTTCTTCATCACTTTCTGAAGGAGCTGATTTACAACAATCATTAGGTggatc  <  1:7903546/75‑4 (MQ=255) |                                                                           AGGAGCAGCACTTGGTAAATTAATTTCTTCATCACTTTCTGAAGGAGCTGATTTACAACAATCATTAGGTGGGGT  >  NC_004302/23013‑23087

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑