mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 319 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,723,066 | 0 | A | C | 49.0% | 147.8 / 49.8 | 102 | intergenic (‑39238/‑10704) | unknown/unknown | tRNA‑Arg‑CCG/tRNA‑Asn‑GTT |
| * | 1 | 1,688,454 | 0 | A | C | 46.0% | 177.1 / 43.9 | 113 | intergenic (‑4626/‑45316) | unknown/unknown | tRNA‑Arg‑CCG/tRNA‑Asn‑GTT |
| * | 1 | 1,322,222 | 0 | T | G | 43.7% | 218.1 / 18.1 | 119 | intergenic (+15433/+238789) | unknown/unknown | tRNA‑Met‑CAT/tRNA‑Val‑GAC |
| * | 1 | 1,723,052 | 0 | A | C | 43.1% | 187.1 / 23.2 | 102 | intergenic (‑39224/‑10718) | unknown/unknown | tRNA‑Arg‑CCG/tRNA‑Asn‑GTT |
| * | 1 | 1,496,271 | 0 | A | C | 41.5% | 292.6 / 19.9 | 142 | intergenic (+189482/+64740) | unknown/unknown | tRNA‑Met‑CAT/tRNA‑Val‑GAC |
| * | 1 | 1,925,181 | 0 | C | T | 41.2% | 92.4 / 34.1 | 85 | intergenic (+115116/‑24272) | unknown/unknown | tRNA‑Leu‑CAA/tRNA‑Asp‑GTC |
| * | 1 | 1,953,627 | 0 | T | G | 40.7% | 245.2 / 52.8 | 136 | intergenic (+3999/+48955) | unknown/unknown | tRNA‑Asp‑GTC/tRNA‑Lys‑CTT |
| * | 1 | 1,573,069 | 0 | G | A | 40.0% | 136.3 / 40.6 | 85 | intergenic (‑11982/+7936) | unknown/unknown | tRNA‑Val‑GAC/LSU rRNA ## 23S rRNA, large subunit ribosomal RNA |
| * | 1 | 2,106,284 | 0 | A | C | 38.8% | 278.8 / 24.4 | 129 | intergenic (‑39342/–) | unknown/– | tRNA‑Met‑CAT/– |
| * | 1 | 820,354 | 0 | G | A | 38.6% | 144.1 / 43.4 | 88 | intergenic (+50623/+32560) | unknown/unknown | tRNA‑Asn‑GTT/tRNA‑Thr‑GGT |
| * | 1 | 581,418 | 0 | T | G | 38.6% | 331.5 / 37.2 | 155 | intergenic (+58444/‑150149) | unknown/unknown | tRNA‑SeC(p)‑TCA/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA |
| * | 1 | 1,573,058 | 0 | A | C | 38.4% | 179.5 / 30.8 | 86 | intergenic (‑11971/+7947) | unknown/unknown | tRNA‑Val‑GAC/LSU rRNA ## 23S rRNA, large subunit ribosomal RNA |
| * | 1 | 784,164 | 0 | A | T | 38.3% | 211.3 / 55.4 | 120 | intergenic (+14433/+68750) | unknown/unknown | tRNA‑Asn‑GTT/tRNA‑Thr‑GGT |
| * | 1 | 1,599,733 | 0 | T | C | 37.9% | 151.1 / 27.3 | 88 | intergenic (‑13782/‑59502) | unknown/unknown | SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/tRNA‑Ser‑GGA |
| * | 1 | 500,366 | 0 | T | C | 37.7% | 231.7 / 35.1 | 122 | intergenic (‑55304/‑22518) | unknown/unknown | SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/tRNA‑SeC(p)‑TCA |
| * | 1 | 1,370,973 | 0 | T | G | 37.5% | 96.5 / 13.4 | 67 | intergenic (+64184/+190038) | unknown/unknown | tRNA‑Met‑CAT/tRNA‑Val‑GAC |
| * | 1 | 1,836,305 | 0 | A | C | 37.5% | 157.2 / 12.9 | 73 | intergenic (+26240/‑113148) | unknown/unknown | tRNA‑Leu‑CAA/tRNA‑Asp‑GTC |
| * | 1 | 683,897 | 0 | T | G | 37.2% | 274.7 / 28.9 | 137 | intergenic (+160923/‑47670) | unknown/unknown | tRNA‑SeC(p)‑TCA/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA |
| * | 1 | 826,434 | 0 | C | T | 37.1% | 164.8 / 46.8 | 107 | intergenic (+56703/+26480) | unknown/unknown | tRNA‑Asn‑GTT/tRNA‑Thr‑GGT |
| * | 1 | 1,455,208 | 0 | A | C | 37.0% | 166.0 / 28.2 | 81 | intergenic (+148419/+105803) | unknown/unknown | tRNA‑Met‑CAT/tRNA‑Val‑GAC |
| Marginal new junction evidence (lowest skew 10 of 27 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | 1 | 92437 = | 90 (0.720) | 9 (0.160) | 9/198 | 3.4 | 18.0% | intergenic (–/‑5655) | –/unknown | –/tRNA‑Pseudo‑??? |
| ? | 1 | = 92432 | 42 (0.760) | intergenic (–/‑5660) | –/unknown | –/tRNA‑Pseudo‑??? | |||||
| * | ? | 1 | = 292479 | NA (NA) | 6 (0.050) | 5/410 | 8.4 | NA | noncoding (1287/3023 nt) | unknown | LSU rRNA ## 23S rRNA, large subunit ribosomal RNA |
| ? | 1 | = 292584 | NA (NA) | noncoding (1182/3023 nt) | unknown | LSU rRNA ## 23S rRNA, large subunit ribosomal RNA | |||||
| * | ? | 1 | 548931 = | 117 (0.940) | 5 (0.040) | 5/418 | 8.5 | 3.7% | intergenic (+25957/‑182636) | unknown/unknown | tRNA‑SeC(p)‑TCA/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA |
| ? | 1 | 549025 = | 147 (1.260) | intergenic (+26051/‑182542) | unknown/unknown | tRNA‑SeC(p)‑TCA/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA | |||||
| * | ? | 1 | = 288651 | 129 (1.040) | 5 (0.040) | 5/428 | 8.6 | 3.8% | intergenic (+123815/+2092) | unknown/unknown | tRNA‑Val‑TAC/LSU rRNA ## 23S rRNA, large subunit ribosomal RNA |
| ? | 1 | = 288660 | 126 (1.050) | intergenic (+123824/+2083) | unknown/unknown | tRNA‑Val‑TAC/LSU rRNA ## 23S rRNA, large subunit ribosomal RNA | |||||
| * | ? | 1 | 108076 = | 147 (1.180) | 5 (0.040) | 5/424 | 8.6 | 3.4% | intergenic (+9917/+54583) | unknown/unknown | tRNA‑Pseudo‑???/tRNA‑Ala‑GGC |
| ? | 1 | 108131 = | 143 (1.200) | intergenic (+9972/+54528) | unknown/unknown | tRNA‑Pseudo‑???/tRNA‑Ala‑GGC | |||||
| * | ? | 1 | = 1277995 | 156 (1.250) | 6 (0.050) | 5/434 | 8.7 | 4.0% | intergenic (‑185682/‑4772) | unknown/unknown | tRNA‑Gly‑GCC/tRNA‑Met‑CAT |
| ? | 1 | = 1278112 | 134 (1.100) | intergenic (‑185799/‑4655) | unknown/unknown | tRNA‑Gly‑GCC/tRNA‑Met‑CAT | |||||
| * | ? | 1 | 255129 = | 150 (1.210) | 5 (0.040) | 5/436 | 8.7 | 3.5% | intergenic (+90293/+35614) | unknown/unknown | tRNA‑Val‑TAC/LSU rRNA ## 23S rRNA, large subunit ribosomal RNA |
| ? | 1 | 255507 = | 126 (1.030) | intergenic (+90671/+35236) | unknown/unknown | tRNA‑Val‑TAC/LSU rRNA ## 23S rRNA, large subunit ribosomal RNA | |||||
| * | ? | 1 | 1854493 = | 36 (0.290) | 4 (0.030) | 4/420 | 9.1 | 14.8% | intergenic (+44428/‑94960) | unknown/unknown | tRNA‑Leu‑CAA/tRNA‑Asp‑GTC |
| ? | 1 | 1854932 = | 12 (0.100) | intergenic (+44867/‑94521) | unknown/unknown | tRNA‑Leu‑CAA/tRNA‑Asp‑GTC | |||||
| * | ? | 1 | 250645 = | 73 (0.590) | 4 (0.030) | 4/430 | 9.2 | 5.2% | intergenic (+85809/+40098) | unknown/unknown | tRNA‑Val‑TAC/LSU rRNA ## 23S rRNA, large subunit ribosomal RNA |
| ? | 1 | 250669 = | 74 (0.610) | intergenic (+85833/+40074) | unknown/unknown | tRNA‑Val‑TAC/LSU rRNA ## 23S rRNA, large subunit ribosomal RNA | |||||
| * | ? | 1 | 16273 = | 67 (0.540) | 7 (0.060) | 4/430 | 9.2 | 10.3% | intergenic (–/‑81819) | –/unknown | –/tRNA‑Pseudo‑??? |
| ? | 1 | 16690 = | 57 (0.470) | intergenic (–/‑81402) | –/unknown | –/tRNA‑Pseudo‑??? | |||||