#=GENOME_DIFF	1.0
#=CREATED	13:24:29 20 Jan 2022
#=PROGRAM	breseq 0.35.4 
#=COMMAND	breseq -j 6 -r /data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/genomes/Aa30S.gbk /data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/fastq/AA-30R-unknown_S6_L001_R1_001.fastq.gz -o /data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/breseq_results/fq30R_vs_gbk30S
#=REFSEQ	/data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/genomes/Aa30S.gbk
#=READSEQ	/data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/fastq/AA-30R-unknown_S6_L001_R1_001.fastq.gz
#=CONVERTED-BASES	269984433
#=CONVERTED-READS	1209223
#=INPUT-BASES	270021533
#=INPUT-READS	1210283
#=MAPPED-BASES	265639284
#=MAPPED-READS	1191757
SNP	1	147	1	894165	A
RA	2	.	1	7502	0	A	C	bias_e_value=1.00137e-09	bias_p_value=4.723e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=349.6	fisher_strand_p_value=1.18142e-17	frequency=2.619e-01	ks_quality_p_value=1	major_base=A	major_cov=75/18	major_frequency=7.381e-01	minor_base=C	minor_cov=0/33	new_cov=0/33	polymorphism_frequency=2.619e-01	polymorphism_score=16.5	prediction=polymorphism	ref_cov=75/18	total_cov=75/51
RA	3	.	1	43552	0	T	G	bias_e_value=1.61716e-09	bias_p_value=7.62741e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=326.6	fisher_strand_p_value=1.9317e-17	frequency=3.050e-01	ks_quality_p_value=1	major_base=T	major_cov=28/70	major_frequency=6.950e-01	minor_base=G	minor_cov=43/0	new_cov=43/0	polymorphism_frequency=3.050e-01	polymorphism_score=17.7	prediction=polymorphism	ref_cov=28/70	total_cov=73/70
RA	4	.	1	64315	0	T	G	bias_e_value=5.97053e-18	bias_p_value=2.81603e-24	consensus_reject=FREQUENCY_CUTOFF	consensus_score=343.2	fisher_strand_p_value=4.74803e-26	frequency=3.631e-01	ks_quality_p_value=1	major_base=T	major_cov=20/80	major_frequency=6.369e-01	minor_base=G	minor_cov=57/0	new_cov=57/0	polymorphism_frequency=3.631e-01	polymorphism_score=34.0	prediction=polymorphism	ref_cov=20/80	total_cov=77/80
RA	5	.	1	64574	0	A	C	bias_e_value=7.42424e-07	bias_p_value=3.50168e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=418.9	fisher_strand_p_value=1.05528e-14	frequency=2.132e-01	ks_quality_p_value=1	major_base=A	major_cov=81/26	major_frequency=7.868e-01	minor_base=C	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=2.132e-01	polymorphism_score=19.0	prediction=polymorphism	ref_cov=81/26	total_cov=81/57
RA	6	.	1	64588	0	C	A	bias_e_value=2.07812e-06	bias_p_value=9.80154e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=391.5	fisher_strand_p_value=3.06561e-14	frequency=2.240e-01	ks_quality_p_value=0.995392	major_base=C	major_cov=74/23	major_frequency=7.760e-01	minor_base=A	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.240e-01	polymorphism_score=29.5	prediction=polymorphism	ref_cov=74/23	total_cov=74/51
RA	7	.	1	75301	0	T	C	bias_e_value=4.32241e-09	bias_p_value=2.03869e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=381.8	fisher_strand_p_value=5.29852e-17	frequency=2.346e-01	ks_quality_p_value=1	major_base=T	major_cov=89/35	major_frequency=7.654e-01	minor_base=C	minor_cov=0/38	new_cov=0/38	polymorphism_frequency=2.346e-01	polymorphism_score=13.6	prediction=polymorphism	ref_cov=89/35	total_cov=89/77
RA	8	.	1	92433	0	T	.	bias_e_value=1430810	bias_p_value=0.674849	consensus_reject=FREQUENCY_CUTOFF	consensus_score=132.7	fisher_strand_p_value=0.411274	frequency=2.000e-01	ks_quality_p_value=0.757465	major_base=T	major_cov=9/27	major_frequency=8.000e-01	minor_base=.	minor_cov=4/5	new_cov=4/5	polymorphism_frequency=2.000e-01	polymorphism_score=24.1	prediction=polymorphism	ref_cov=9/27	total_cov=13/32
RA	9	.	1	92434	0	T	.	bias_e_value=1568920	bias_p_value=0.739991	consensus_reject=FREQUENCY_CUTOFF	consensus_score=136.1	fisher_strand_p_value=0.411274	frequency=2.000e-01	ks_quality_p_value=0.904837	major_base=T	major_cov=9/27	major_frequency=8.000e-01	minor_base=.	minor_cov=4/5	new_cov=4/5	polymorphism_frequency=2.000e-01	polymorphism_score=24.1	prediction=polymorphism	ref_cov=9/27	total_cov=13/32
RA	10	.	1	161859	0	C	T	bias_e_value=2.87859e-10	bias_p_value=1.3577e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=231.9	fisher_strand_p_value=3.29097e-18	frequency=2.881e-01	ks_quality_p_value=1	major_base=C	major_cov=15/69	major_frequency=7.119e-01	minor_base=T	minor_cov=34/0	new_cov=34/0	polymorphism_frequency=2.881e-01	polymorphism_score=34.8	prediction=polymorphism	ref_cov=15/69	total_cov=49/69
RA	11	.	1	161868	0	G	A	bias_e_value=1.36151e-07	bias_p_value=6.42164e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=272.2	fisher_strand_p_value=1.83844e-15	frequency=2.414e-01	ks_quality_p_value=1	major_base=G	major_cov=17/71	major_frequency=7.586e-01	minor_base=A	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=2.414e-01	polymorphism_score=23.4	prediction=polymorphism	ref_cov=17/71	total_cov=45/71
RA	12	.	1	168240	0	C	T	bias_e_value=1.02513e-09	bias_p_value=4.83507e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=363.1	fisher_strand_p_value=1.21018e-17	frequency=2.254e-01	ks_quality_p_value=1	major_base=C	major_cov=22/88	major_frequency=7.746e-01	minor_base=T	minor_cov=32/0	new_cov=32/0	polymorphism_frequency=2.254e-01	polymorphism_score=19.1	prediction=polymorphism	ref_cov=22/88	total_cov=56/88
RA	13	.	1	185655	0	G	A	bias_e_value=7.05526e-15	bias_p_value=3.32765e-21	consensus_reject=FREQUENCY_CUTOFF	consensus_score=290.0	fisher_strand_p_value=6.38639e-23	frequency=3.066e-01	ks_quality_p_value=1	major_base=G	major_cov=80/15	major_frequency=6.934e-01	minor_base=A	minor_cov=0/42	new_cov=0/42	polymorphism_frequency=3.066e-01	polymorphism_score=36.5	prediction=polymorphism	ref_cov=80/15	total_cov=80/57
RA	14	.	1	185685	0	C	T	bias_e_value=6.92887e-08	bias_p_value=3.26803e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=271.6	fisher_strand_p_value=9.22854e-16	frequency=2.756e-01	ks_quality_p_value=0.994027	major_base=C	major_cov=68/24	major_frequency=7.244e-01	minor_base=T	minor_cov=0/35	new_cov=0/35	polymorphism_frequency=2.756e-01	polymorphism_score=31.9	prediction=polymorphism	ref_cov=68/24	total_cov=68/60
RA	15	.	1	185693	0	T	G	bias_e_value=2.27927e-05	bias_p_value=1.07503e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=312.9	fisher_strand_p_value=3.6263e-13	frequency=2.403e-01	ks_quality_p_value=1	major_base=T	major_cov=68/30	major_frequency=7.597e-01	minor_base=G	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=2.403e-01	polymorphism_score=13.1	prediction=polymorphism	ref_cov=68/30	total_cov=68/61
RA	16	.	1	185729	0	G	T	bias_e_value=1.24557e-11	bias_p_value=5.87479e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=309.7	fisher_strand_p_value=1.32105e-19	frequency=3.043e-01	ks_quality_p_value=1	major_base=G	major_cov=12/68	major_frequency=6.957e-01	minor_base=T	minor_cov=35/0	new_cov=35/0	polymorphism_frequency=3.043e-01	polymorphism_score=33.8	prediction=polymorphism	ref_cov=12/68	total_cov=47/68
RA	17	.	1	191268	0	T	A	bias_e_value=1.1433e-06	bias_p_value=5.39243e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=289.1	fisher_strand_p_value=1.64719e-14	frequency=2.778e-01	ks_quality_p_value=1	major_base=T	major_cov=27/64	major_frequency=7.222e-01	minor_base=A	minor_cov=35/0	new_cov=35/0	polymorphism_frequency=2.778e-01	polymorphism_score=26.1	prediction=polymorphism	ref_cov=27/64	total_cov=63/64
RA	18	.	1	191270	0	G	A	bias_e_value=0.0215191	bias_p_value=1.01496e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=300.2	fisher_strand_p_value=4.50687e-10	frequency=2.109e-01	ks_quality_p_value=1	major_base=G	major_cov=37/64	major_frequency=7.891e-01	minor_base=A	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=2.109e-01	polymorphism_score=22.5	prediction=polymorphism	ref_cov=37/64	total_cov=64/64
RA	19	.	1	191288	0	G	A	bias_e_value=7.91994e-07	bias_p_value=3.73548e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=332.9	fisher_strand_p_value=1.12801e-14	frequency=2.446e-01	ks_quality_p_value=1	major_base=G	major_cov=31/74	major_frequency=7.554e-01	minor_base=A	minor_cov=34/0	new_cov=34/0	polymorphism_frequency=2.446e-01	polymorphism_score=28.9	prediction=polymorphism	ref_cov=31/74	total_cov=67/74
RA	20	.	1	245224	0	A	C	bias_e_value=4.19119e-07	bias_p_value=1.97679e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=377.8	fisher_strand_p_value=5.85339e-15	frequency=2.248e-01	ks_quality_p_value=1	major_base=A	major_cov=77/23	major_frequency=7.752e-01	minor_base=C	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=2.248e-01	polymorphism_score=15.3	prediction=polymorphism	ref_cov=77/23	total_cov=77/52
RA	21	.	1	245228	0	C	A	bias_e_value=9.64736e-07	bias_p_value=4.55022e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=375.1	fisher_strand_p_value=1.38253e-14	frequency=2.240e-01	ks_quality_p_value=1	major_base=C	major_cov=75/22	major_frequency=7.760e-01	minor_base=A	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.240e-01	polymorphism_score=14.4	prediction=polymorphism	ref_cov=75/22	total_cov=75/50
RA	22	.	1	245239	0	G	T	bias_e_value=1.61984e-11	bias_p_value=7.64007e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=312.6	fisher_strand_p_value=1.72845e-19	frequency=3.000e-01	ks_quality_p_value=1	major_base=G	major_cov=70/14	major_frequency=7.000e-01	minor_base=T	minor_cov=0/36	new_cov=0/36	polymorphism_frequency=3.000e-01	polymorphism_score=32.6	prediction=polymorphism	ref_cov=70/14	total_cov=70/50
RA	23	.	1	268770	0	T	C	bias_e_value=4.56172e-12	bias_p_value=2.15156e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=496.6	fisher_strand_p_value=4.72891e-20	frequency=2.416e-01	ks_quality_p_value=1	major_base=T	major_cov=100/35	major_frequency=7.584e-01	minor_base=C	minor_cov=0/43	new_cov=0/43	polymorphism_frequency=2.416e-01	polymorphism_score=10.5	prediction=polymorphism	ref_cov=100/35	total_cov=100/78
RA	24	.	1	268808	0	A	G	bias_e_value=1.26859e-08	bias_p_value=5.98334e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=456.6	fisher_strand_p_value=1.60108e-16	frequency=2.023e-01	ks_quality_p_value=1	major_base=A	major_cov=100/38	major_frequency=7.977e-01	minor_base=G	minor_cov=0/35	new_cov=0/35	polymorphism_frequency=2.023e-01	polymorphism_score=14.1	prediction=polymorphism	ref_cov=100/38	total_cov=100/73
RA	25	.	1	268822	0	T	A	bias_e_value=6.02324e-07	bias_p_value=2.84089e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=420.1	fisher_strand_p_value=8.53356e-15	frequency=2.025e-01	ks_quality_p_value=0.99679	major_base=T	major_cov=90/36	major_frequency=7.975e-01	minor_base=A	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=2.025e-01	polymorphism_score=21.9	prediction=polymorphism	ref_cov=90/36	total_cov=90/69
RA	26	.	1	268835	0	C	A	bias_e_value=4.58846e-17	bias_p_value=2.16417e-23	consensus_reject=FREQUENCY_CUTOFF	consensus_score=321.6	fisher_strand_p_value=3.78123e-25	frequency=3.378e-01	ks_quality_p_value=1	major_base=C	major_cov=81/17	major_frequency=6.622e-01	minor_base=A	minor_cov=0/50	new_cov=0/50	polymorphism_frequency=3.378e-01	polymorphism_score=64.9	prediction=polymorphism	ref_cov=81/17	total_cov=81/67
RA	27	.	1	268848	0	A	C	bias_e_value=3.50821e-17	bias_p_value=1.65467e-23	consensus_reject=FREQUENCY_CUTOFF	consensus_score=323.8	fisher_strand_p_value=2.87729e-25	frequency=3.537e-01	ks_quality_p_value=1	major_base=A	major_cov=78/17	major_frequency=6.463e-01	minor_base=C	minor_cov=0/52	new_cov=0/52	polymorphism_frequency=3.537e-01	polymorphism_score=16.4	prediction=polymorphism	ref_cov=78/17	total_cov=78/69
RA	28	.	1	275145	0	A	C	bias_e_value=1.9688e-12	bias_p_value=9.28596e-19	consensus_reject=FREQUENCY_CUTOFF	consensus_score=263.1	fisher_strand_p_value=2.00314e-20	frequency=2.985e-01	ks_quality_p_value=1	major_base=A	major_cov=18/76	major_frequency=7.015e-01	minor_base=C	minor_cov=40/0	new_cov=40/0	polymorphism_frequency=2.985e-01	polymorphism_score=36.4	prediction=polymorphism	ref_cov=18/76	total_cov=58/78
RA	29	.	1	275150	0	A	G	bias_e_value=2.08315e-12	bias_p_value=9.82527e-19	consensus_reject=FREQUENCY_CUTOFF	consensus_score=249.5	fisher_strand_p_value=2.12212e-20	frequency=2.923e-01	ks_quality_p_value=1	major_base=A	major_cov=16/76	major_frequency=7.077e-01	minor_base=G	minor_cov=38/0	new_cov=38/0	polymorphism_frequency=2.923e-01	polymorphism_score=18.5	prediction=polymorphism	ref_cov=16/76	total_cov=57/77
RA	30	.	1	275159	0	G	A	bias_e_value=1364130	bias_p_value=0.6434	consensus_reject=FREQUENCY_CUTOFF	consensus_score=279.8	fisher_strand_p_value=0.285517	frequency=2.061e-01	ks_quality_p_value=1	major_base=G	major_cov=47/57	major_frequency=7.939e-01	minor_base=A	minor_cov=9/18	new_cov=9/18	polymorphism_frequency=2.061e-01	polymorphism_score=16.6	prediction=polymorphism	ref_cov=47/57	total_cov=56/75
RA	31	.	1	275163	0	T	A	bias_e_value=3.08533e-06	bias_p_value=1.45521e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=283.4	fisher_strand_p_value=4.58874e-14	frequency=2.231e-01	ks_quality_p_value=1	major_base=T	major_cov=26/75	major_frequency=7.769e-01	minor_base=A	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=2.231e-01	polymorphism_score=15.8	prediction=polymorphism	ref_cov=26/75	total_cov=55/78
RA	32	.	1	275171	0	G	A	bias_e_value=0.000284694	bias_p_value=1.34277e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=238.2	fisher_strand_p_value=4.96809e-12	frequency=2.748e-01	ks_quality_p_value=1	major_base=G	major_cov=22/73	major_frequency=7.252e-01	minor_base=A	minor_cov=32/4	new_cov=32/4	polymorphism_frequency=2.748e-01	polymorphism_score=29.5	prediction=polymorphism	ref_cov=22/73	total_cov=54/77
RA	33	.	1	275204	0	A	C	bias_e_value=0.00103787	bias_p_value=4.89517e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=327.9	fisher_strand_p_value=1.90596e-11	frequency=2.393e-01	ks_quality_p_value=1	major_base=A	major_cov=60/29	major_frequency=7.607e-01	minor_base=C	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.393e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=60/29	total_cov=60/57
RA	34	.	1	275211	0	G	C	bias_e_value=104550	bias_p_value=0.0493116	consensus_reject=FREQUENCY_CUTOFF	consensus_score=273.2	fisher_strand_p_value=0.00856007	frequency=2.393e-01	ks_quality_p_value=1	major_base=G	major_cov=40/49	major_frequency=7.607e-01	minor_base=C	minor_cov=21/7	new_cov=21/7	polymorphism_frequency=2.393e-01	polymorphism_score=21.8	prediction=polymorphism	ref_cov=40/49	total_cov=61/56
RA	35	.	1	275241	0	A	C	bias_e_value=0.173195	bias_p_value=8.16883e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=249.9	fisher_strand_p_value=4.01761e-09	frequency=3.017e-01	ks_quality_p_value=1	major_base=A	major_cov=59/22	major_frequency=6.983e-01	minor_base=C	minor_cov=5/30	new_cov=5/30	polymorphism_frequency=3.017e-01	polymorphism_score=17.1	prediction=polymorphism	ref_cov=59/22	total_cov=64/52
RA	36	.	1	275282	0	A	C	bias_e_value=1.30666e-06	bias_p_value=6.16293e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=222.5	fisher_strand_p_value=1.89051e-14	frequency=3.303e-01	ks_quality_p_value=1	major_base=A	major_cov=66/7	major_frequency=6.697e-01	minor_base=C	minor_cov=6/30	new_cov=6/30	polymorphism_frequency=3.303e-01	polymorphism_score=36.7	prediction=polymorphism	ref_cov=66/7	total_cov=72/38
RA	37	.	1	276075	0	T	A	bias_e_value=4.33975e-14	bias_p_value=2.04686e-20	consensus_reject=FREQUENCY_CUTOFF	consensus_score=431.2	fisher_strand_p_value=4.07316e-22	frequency=2.349e-01	ks_quality_p_value=1	major_base=T	major_cov=104/23	major_frequency=7.651e-01	minor_base=A	minor_cov=0/39	new_cov=0/39	polymorphism_frequency=2.349e-01	polymorphism_score=34.4	prediction=polymorphism	ref_cov=104/23	total_cov=104/62
RA	38	.	1	311866	0	C	A	bias_e_value=2.68226e-14	bias_p_value=1.2651e-20	consensus_reject=FREQUENCY_CUTOFF	consensus_score=426.5	fisher_strand_p_value=2.49314e-22	frequency=2.778e-01	ks_quality_p_value=1	major_base=C	major_cov=25/92	major_frequency=7.222e-01	minor_base=A	minor_cov=45/0	new_cov=45/0	polymorphism_frequency=2.778e-01	polymorphism_score=31.4	prediction=polymorphism	ref_cov=25/92	total_cov=71/92
RA	39	.	1	311890	0	T	A	bias_e_value=2.66517e-07	bias_p_value=1.25704e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=428.9	fisher_strand_p_value=3.67146e-15	frequency=2.099e-01	ks_quality_p_value=1	major_base=T	major_cov=38/90	major_frequency=7.901e-01	minor_base=A	minor_cov=34/0	new_cov=34/0	polymorphism_frequency=2.099e-01	polymorphism_score=18.2	prediction=polymorphism	ref_cov=38/90	total_cov=73/90
RA	40	.	1	312173	0	A	G	bias_e_value=2.36469e-08	bias_p_value=1.11532e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=287.0	fisher_strand_p_value=3.03648e-16	frequency=2.115e-01	ks_quality_p_value=1	major_base=A	major_cov=8/74	major_frequency=7.885e-01	minor_base=G	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.115e-01	polymorphism_score=17.5	prediction=polymorphism	ref_cov=8/74	total_cov=32/74
RA	41	.	1	322057	0	A	T	bias_e_value=45.5212	bias_p_value=2.14703e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=159.6	fisher_strand_p_value=1.48921e-06	frequency=2.436e-01	ks_quality_p_value=1	major_base=A	major_cov=24/35	major_frequency=7.564e-01	minor_base=T	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.436e-01	polymorphism_score=14.2	prediction=polymorphism	ref_cov=24/35	total_cov=43/35
RA	42	.	1	322060	0	G	T	bias_e_value=7.56221	bias_p_value=3.56675e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=186.0	fisher_strand_p_value=2.18319e-07	frequency=2.692e-01	ks_quality_p_value=1	major_base=G	major_cov=22/35	major_frequency=7.308e-01	minor_base=T	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.692e-01	polymorphism_score=14.8	prediction=polymorphism	ref_cov=22/35	total_cov=43/35
RA	43	.	1	322068	0	G	T	bias_e_value=15.4213	bias_p_value=7.27355e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=185.6	fisher_strand_p_value=4.66939e-07	frequency=2.597e-01	ks_quality_p_value=1	major_base=G	major_cov=22/35	major_frequency=7.403e-01	minor_base=T	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.597e-01	polymorphism_score=12.5	prediction=polymorphism	ref_cov=22/35	total_cov=43/35
RA	44	.	1	328397	0	C	T	bias_e_value=7.14931e-06	bias_p_value=3.372e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=247.5	fisher_strand_p_value=1.09323e-13	frequency=2.000e-01	ks_quality_p_value=1	major_base=C	major_cov=68/4	major_frequency=8.000e-01	minor_base=T	minor_cov=1/17	new_cov=1/17	polymorphism_frequency=2.000e-01	polymorphism_score=12.4	prediction=polymorphism	ref_cov=68/4	total_cov=69/23
RA	45	.	1	379798	0	A	C	bias_e_value=1.31088e-09	bias_p_value=6.18283e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=390.0	fisher_strand_p_value=1.55735e-17	frequency=2.632e-01	ks_quality_p_value=1	major_base=A	major_cov=81/31	major_frequency=7.368e-01	minor_base=C	minor_cov=0/40	new_cov=0/40	polymorphism_frequency=2.632e-01	polymorphism_score=15.7	prediction=polymorphism	ref_cov=81/31	total_cov=81/71
RA	46	.	1	390022	0	C	A	bias_e_value=7.12478e-12	bias_p_value=3.36044e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=435.8	fisher_strand_p_value=7.46067e-20	frequency=2.190e-01	ks_quality_p_value=1	major_base=C	major_cov=93/14	major_frequency=7.810e-01	minor_base=A	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=2.190e-01	polymorphism_score=23.8	prediction=polymorphism	ref_cov=93/14	total_cov=93/44
RA	47	.	1	405788	0	A	C	bias_e_value=4.95186e-07	bias_p_value=2.33557e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=356.6	fisher_strand_p_value=6.95112e-15	frequency=2.941e-01	ks_quality_p_value=1	major_base=A	major_cov=64/32	major_frequency=7.059e-01	minor_base=C	minor_cov=0/40	new_cov=0/40	polymorphism_frequency=2.941e-01	polymorphism_score=12.5	prediction=polymorphism	ref_cov=64/32	total_cov=64/74
RA	48	.	1	405827	0	A	C	bias_e_value=7.26635e-12	bias_p_value=3.42721e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=313.7	fisher_strand_p_value=7.61231e-20	frequency=3.188e-01	ks_quality_p_value=1	major_base=A	major_cov=72/22	major_frequency=6.812e-01	minor_base=C	minor_cov=0/44	new_cov=0/44	polymorphism_frequency=3.188e-01	polymorphism_score=35.6	prediction=polymorphism	ref_cov=72/22	total_cov=72/68
RA	49	.	1	407078	0	A	C	bias_e_value=1.5131e-07	bias_p_value=7.13661e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=306.5	fisher_strand_p_value=2.0495e-15	frequency=2.857e-01	ks_quality_p_value=1	major_base=A	major_cov=65/25	major_frequency=7.143e-01	minor_base=C	minor_cov=0/36	new_cov=0/36	polymorphism_frequency=2.857e-01	polymorphism_score=20.0	prediction=polymorphism	ref_cov=65/25	total_cov=65/62
RA	50	.	1	411661	0	C	A	bias_e_value=2.82393e-12	bias_p_value=1.33192e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=468.9	fisher_strand_p_value=2.89621e-20	frequency=2.426e-01	ks_quality_p_value=1	major_base=C	major_cov=30/98	major_frequency=7.574e-01	minor_base=A	minor_cov=41/0	new_cov=41/0	polymorphism_frequency=2.426e-01	polymorphism_score=27.7	prediction=polymorphism	ref_cov=30/98	total_cov=71/98
RA	51	.	1	411697	0	G	A	bias_e_value=5.02822e-19	bias_p_value=2.37158e-25	consensus_reject=FREQUENCY_CUTOFF	consensus_score=358.7	fisher_strand_p_value=3.83594e-27	frequency=3.018e-01	ks_quality_p_value=1	major_base=G	major_cov=20/98	major_frequency=6.982e-01	minor_base=A	minor_cov=51/0	new_cov=51/0	polymorphism_frequency=3.018e-01	polymorphism_score=57.6	prediction=polymorphism	ref_cov=20/98	total_cov=71/98
RA	52	.	1	411719	0	T	A	bias_e_value=9.1003e-11	bias_p_value=4.2922e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=490.5	fisher_strand_p_value=1.01147e-18	frequency=2.202e-01	ks_quality_p_value=1	major_base=T	major_cov=31/100	major_frequency=7.798e-01	minor_base=A	minor_cov=37/0	new_cov=37/0	polymorphism_frequency=2.202e-01	polymorphism_score=19.8	prediction=polymorphism	ref_cov=31/100	total_cov=71/101
RA	53	.	1	411748	0	G	A	bias_e_value=7.79162e-09	bias_p_value=3.67495e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=453.2	fisher_strand_p_value=9.70376e-17	frequency=2.000e-01	ks_quality_p_value=1	major_base=G	major_cov=30/98	major_frequency=8.000e-01	minor_base=A	minor_cov=32/0	new_cov=32/0	polymorphism_frequency=2.000e-01	polymorphism_score=24.0	prediction=polymorphism	ref_cov=30/98	total_cov=63/98
RA	54	.	1	419794	0	G	A	bias_e_value=4.67734e-11	bias_p_value=2.20609e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=323.5	fisher_strand_p_value=5.11656e-19	frequency=2.685e-01	ks_quality_p_value=1	major_base=G	major_cov=83/26	major_frequency=7.315e-01	minor_base=A	minor_cov=0/40	new_cov=0/40	polymorphism_frequency=2.685e-01	polymorphism_score=40.2	prediction=polymorphism	ref_cov=83/26	total_cov=83/67
RA	55	.	1	419822	0	A	C	bias_e_value=3.33e-09	bias_p_value=1.57061e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=423.2	fisher_strand_p_value=4.05378e-17	frequency=2.450e-01	ks_quality_p_value=1	major_base=A	major_cov=84/30	major_frequency=7.550e-01	minor_base=C	minor_cov=0/37	new_cov=0/37	polymorphism_frequency=2.450e-01	polymorphism_score=18.1	prediction=polymorphism	ref_cov=84/30	total_cov=84/68
RA	56	.	1	419837	0	A	T	bias_e_value=1.26346e-05	bias_p_value=5.95918e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=387.2	fisher_strand_p_value=1.9696e-13	frequency=2.083e-01	ks_quality_p_value=1	major_base=A	major_cov=80/34	major_frequency=7.917e-01	minor_base=T	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=2.083e-01	polymorphism_score=12.8	prediction=polymorphism	ref_cov=80/34	total_cov=80/64
RA	57	.	1	419845	0	T	C	bias_e_value=6.62299e-19	bias_p_value=3.12377e-25	consensus_reject=FREQUENCY_CUTOFF	consensus_score=265.7	fisher_strand_p_value=5.07555e-27	frequency=3.643e-01	ks_quality_p_value=1	major_base=T	major_cov=77/12	major_frequency=6.357e-01	minor_base=C	minor_cov=0/51	new_cov=0/51	polymorphism_frequency=3.643e-01	polymorphism_score=47.6	prediction=polymorphism	ref_cov=77/12	total_cov=77/63
RA	58	.	1	419852	0	A	C	bias_e_value=9.46651e-08	bias_p_value=4.46493e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=356.4	fisher_strand_p_value=1.26471e-15	frequency=2.500e-01	ks_quality_p_value=1	major_base=A	major_cov=74/25	major_frequency=7.500e-01	minor_base=C	minor_cov=0/33	new_cov=0/33	polymorphism_frequency=2.500e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=74/25	total_cov=74/61
RA	59	.	1	426670	0	C	T	bias_e_value=1.04226e-05	bias_p_value=4.91588e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=308.1	fisher_strand_p_value=1.62112e-13	frequency=2.239e-01	ks_quality_p_value=0.995704	major_base=C	major_cov=30/74	major_frequency=7.761e-01	minor_base=T	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=2.239e-01	polymorphism_score=21.0	prediction=polymorphism	ref_cov=30/74	total_cov=60/74
RA	60	.	1	447922	0	A	G	bias_e_value=7.51826e-11	bias_p_value=3.54602e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=376.3	fisher_strand_p_value=8.318e-19	frequency=2.468e-01	ks_quality_p_value=1	major_base=A	major_cov=27/89	major_frequency=7.532e-01	minor_base=G	minor_cov=38/0	new_cov=38/0	polymorphism_frequency=2.468e-01	polymorphism_score=17.5	prediction=polymorphism	ref_cov=27/89	total_cov=65/89
RA	61	.	1	447933	0	T	G	bias_e_value=4.5514e-12	bias_p_value=2.14669e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=409.3	fisher_strand_p_value=4.71797e-20	frequency=2.697e-01	ks_quality_p_value=1	major_base=T	major_cov=25/86	major_frequency=7.303e-01	minor_base=G	minor_cov=41/0	new_cov=41/0	polymorphism_frequency=2.697e-01	polymorphism_score=18.7	prediction=polymorphism	ref_cov=25/86	total_cov=71/86
RA	62	.	1	457683	0	G	A	bias_e_value=1.3697e-09	bias_p_value=6.46025e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=290.0	fisher_strand_p_value=1.63808e-17	frequency=2.342e-01	ks_quality_p_value=0.994504	major_base=G	major_cov=10/75	major_frequency=7.658e-01	minor_base=A	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.342e-01	polymorphism_score=19.0	prediction=polymorphism	ref_cov=10/75	total_cov=37/75
RA	63	.	1	457701	0	G	A	bias_e_value=1.82144e-06	bias_p_value=8.5909e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=322.5	fisher_strand_p_value=2.6633e-14	frequency=2.035e-01	ks_quality_p_value=1	major_base=G	major_cov=15/75	major_frequency=7.965e-01	minor_base=A	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.035e-01	polymorphism_score=16.4	prediction=polymorphism	ref_cov=15/75	total_cov=38/75
RA	64	.	1	457706	0	G	A	bias_e_value=1.06659e-08	bias_p_value=5.03064e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=290.6	fisher_strand_p_value=1.33976e-16	frequency=2.321e-01	ks_quality_p_value=1	major_base=G	major_cov=12/74	major_frequency=7.679e-01	minor_base=A	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.321e-01	polymorphism_score=24.2	prediction=polymorphism	ref_cov=12/74	total_cov=38/74
RA	65	.	1	457753	0	G	A	bias_e_value=0.00319153	bias_p_value=1.5053e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=342.1	fisher_strand_p_value=6.1407e-11	frequency=2.034e-01	ks_quality_p_value=1	major_base=G	major_cov=28/66	major_frequency=7.966e-01	minor_base=A	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.034e-01	polymorphism_score=18.7	prediction=polymorphism	ref_cov=28/66	total_cov=52/66
RA	66	.	1	462607	0	C	T	bias_e_value=5.76294e-09	bias_p_value=2.71812e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=366.2	fisher_strand_p_value=7.11899e-17	frequency=2.335e-01	ks_quality_p_value=1	major_base=C	major_cov=38/90	major_frequency=7.665e-01	minor_base=T	minor_cov=39/0	new_cov=39/0	polymorphism_frequency=2.335e-01	polymorphism_score=26.7	prediction=polymorphism	ref_cov=38/90	total_cov=78/90
RA	67	.	1	474834	0	A	C	bias_e_value=1.82358	bias_p_value=8.601e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=223.5	fisher_strand_p_value=4.819e-08	frequency=2.824e-01	ks_quality_p_value=1	major_base=A	major_cov=37/24	major_frequency=7.176e-01	minor_base=C	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.824e-01	polymorphism_score=15.8	prediction=polymorphism	ref_cov=37/24	total_cov=37/49
RA	68	.	1	474866	0	T	A	bias_e_value=265.347	bias_p_value=0.000125152	consensus_reject=FREQUENCY_CUTOFF	consensus_score=171.6	fisher_strand_p_value=1.0002e-05	frequency=2.329e-01	ks_quality_p_value=1	major_base=T	major_cov=32/24	major_frequency=7.671e-01	minor_base=A	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=2.329e-01	polymorphism_score=16.1	prediction=polymorphism	ref_cov=32/24	total_cov=32/41
RA	69	.	1	479014	0	C	T	bias_e_value=6.80335e-05	bias_p_value=3.20883e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=132.4	fisher_strand_p_value=1.1254e-12	frequency=2.698e-01	ks_quality_p_value=1	major_base=C	major_cov=3/43	major_frequency=7.302e-01	minor_base=T	minor_cov=17/0	new_cov=17/0	polymorphism_frequency=2.698e-01	polymorphism_score=15.9	prediction=polymorphism	ref_cov=3/43	total_cov=21/43
RA	70	.	1	480386	0	G	A	bias_e_value=2.50504e-15	bias_p_value=1.18152e-21	consensus_reject=FREQUENCY_CUTOFF	consensus_score=325.4	fisher_strand_p_value=2.22253e-23	frequency=2.578e-01	ks_quality_p_value=1	major_base=G	major_cov=87/8	major_frequency=7.422e-01	minor_base=A	minor_cov=0/33	new_cov=0/33	polymorphism_frequency=2.578e-01	polymorphism_score=25.9	prediction=polymorphism	ref_cov=87/8	total_cov=87/41
RA	71	.	1	480392	0	A	C	bias_e_value=4.43846e-12	bias_p_value=2.09342e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=372.0	fisher_strand_p_value=4.59829e-20	frequency=2.400e-01	ks_quality_p_value=1	major_base=A	major_cov=84/11	major_frequency=7.600e-01	minor_base=C	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=2.400e-01	polymorphism_score=13.7	prediction=polymorphism	ref_cov=84/11	total_cov=84/41
RA	72	.	1	500334	0	G	A	bias_e_value=1.17037e-07	bias_p_value=5.52012e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=279.7	fisher_strand_p_value=1.57333e-15	frequency=2.583e-01	ks_quality_p_value=1	major_base=G	major_cov=69/20	major_frequency=7.417e-01	minor_base=A	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=2.583e-01	polymorphism_score=23.2	prediction=polymorphism	ref_cov=69/20	total_cov=69/51
RA	73	.	1	500366	0	T	C	bias_e_value=2.07341e-18	bias_p_value=9.77934e-25	consensus_reject=FREQUENCY_CUTOFF	consensus_score=231.7	fisher_strand_p_value=1.6195e-26	frequency=3.770e-01	ks_quality_p_value=1	major_base=T	major_cov=69/7	major_frequency=6.230e-01	minor_base=C	minor_cov=0/46	new_cov=0/46	polymorphism_frequency=3.770e-01	polymorphism_score=35.1	prediction=polymorphism	ref_cov=69/7	total_cov=69/53
RA	74	.	1	500374	0	C	A	bias_e_value=0.000184318	bias_p_value=8.69346e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=369.0	fisher_strand_p_value=3.16364e-12	frequency=2.143e-01	ks_quality_p_value=1	major_base=C	major_cov=70/29	major_frequency=7.857e-01	minor_base=A	minor_cov=0/27	new_cov=0/27	polymorphism_frequency=2.143e-01	polymorphism_score=14.8	prediction=polymorphism	ref_cov=70/29	total_cov=70/56
RA	75	.	1	509090	0	T	C	bias_e_value=0.00534683	bias_p_value=2.52186e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=388.9	fisher_strand_p_value=1.05186e-10	frequency=2.081e-01	ks_quality_p_value=1	major_base=T	major_cov=73/64	major_frequency=7.919e-01	minor_base=C	minor_cov=0/36	new_cov=0/36	polymorphism_frequency=2.081e-01	polymorphism_score=29.9	prediction=polymorphism	ref_cov=73/64	total_cov=73/103
RA	76	.	1	509326	0	G	T	bias_e_value=5.89422e-14	bias_p_value=2.78003e-20	consensus_reject=FREQUENCY_CUTOFF	consensus_score=290.8	fisher_strand_p_value=5.56674e-22	frequency=3.333e-01	ks_quality_p_value=1	major_base=G	major_cov=8/66	major_frequency=6.667e-01	minor_base=T	minor_cov=37/0	new_cov=37/0	polymorphism_frequency=3.333e-01	polymorphism_score=34.1	prediction=polymorphism	ref_cov=8/66	total_cov=45/66
RA	77	.	1	511261	0	A	G	bias_e_value=7.83319e-13	bias_p_value=3.69456e-19	consensus_reject=FREQUENCY_CUTOFF	consensus_score=512.8	fisher_strand_p_value=7.81112e-21	frequency=2.255e-01	ks_quality_p_value=1	major_base=A	major_cov=44/114	major_frequency=7.745e-01	minor_base=G	minor_cov=46/0	new_cov=46/0	polymorphism_frequency=2.255e-01	polymorphism_score=21.0	prediction=polymorphism	ref_cov=44/114	total_cov=93/114
RA	78	.	1	511858	0	A	C	bias_e_value=1.64496e-17	bias_p_value=7.75852e-24	consensus_reject=FREQUENCY_CUTOFF	consensus_score=487.1	fisher_strand_p_value=1.33128e-25	frequency=2.802e-01	ks_quality_p_value=1	major_base=A	major_cov=104/27	major_frequency=7.198e-01	minor_base=C	minor_cov=0/51	new_cov=0/51	polymorphism_frequency=2.802e-01	polymorphism_score=26.4	prediction=polymorphism	ref_cov=104/27	total_cov=104/79
RA	79	.	1	540011	0	T	G	bias_e_value=3.5608e-09	bias_p_value=1.67947e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=413.2	fisher_strand_p_value=4.34246e-17	frequency=2.349e-01	ks_quality_p_value=1	major_base=T	major_cov=28/86	major_frequency=7.651e-01	minor_base=G	minor_cov=35/0	new_cov=35/0	polymorphism_frequency=2.349e-01	polymorphism_score=11.4	prediction=polymorphism	ref_cov=28/86	total_cov=64/86
RA	80	.	1	560582	0	G	A	bias_e_value=2.51314e-05	bias_p_value=1.18534e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=145.0	fisher_strand_p_value=4.01206e-13	frequency=2.222e-01	ks_quality_p_value=1	major_base=G	major_cov=1/48	major_frequency=7.778e-01	minor_base=A	minor_cov=14/0	new_cov=14/0	polymorphism_frequency=2.222e-01	polymorphism_score=27.9	prediction=polymorphism	ref_cov=1/48	total_cov=15/48
RA	81	.	1	560585	0	C	A	bias_e_value=0.000699197	bias_p_value=3.2978e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=193.6	fisher_strand_p_value=1.2638e-11	frequency=2.097e-01	ks_quality_p_value=1	major_base=C	major_cov=2/47	major_frequency=7.903e-01	minor_base=A	minor_cov=13/0	new_cov=13/0	polymorphism_frequency=2.097e-01	polymorphism_score=16.6	prediction=polymorphism	ref_cov=2/47	total_cov=15/47
RA	82	.	1	568240	0	A	C	bias_e_value=1.44323e-14	bias_p_value=6.80706e-21	consensus_reject=FREQUENCY_CUTOFF	consensus_score=478.8	fisher_strand_p_value=1.32496e-22	frequency=2.784e-01	ks_quality_p_value=1	major_base=A	major_cov=96/31	major_frequency=7.216e-01	minor_base=C	minor_cov=0/49	new_cov=0/49	polymorphism_frequency=2.784e-01	polymorphism_score=21.3	prediction=polymorphism	ref_cov=96/31	total_cov=96/81
RA	83	.	1	568256	0	A	C	bias_e_value=5.2153e-22	bias_p_value=2.45982e-28	consensus_reject=FREQUENCY_CUTOFF	consensus_score=407.6	fisher_strand_p_value=3.57514e-30	frequency=3.515e-01	ks_quality_p_value=1	major_base=A	major_cov=91/16	major_frequency=6.485e-01	minor_base=C	minor_cov=0/58	new_cov=0/58	polymorphism_frequency=3.515e-01	polymorphism_score=18.2	prediction=polymorphism	ref_cov=91/16	total_cov=91/76
RA	84	.	1	581418	0	T	G	bias_e_value=3.99594e-24	bias_p_value=1.8847e-30	consensus_reject=FREQUENCY_CUTOFF	consensus_score=331.5	fisher_strand_p_value=2.55573e-32	frequency=3.856e-01	ks_quality_p_value=1	major_base=T	major_cov=10/84	major_frequency=6.144e-01	minor_base=G	minor_cov=59/0	new_cov=59/0	polymorphism_frequency=3.856e-01	polymorphism_score=37.2	prediction=polymorphism	ref_cov=10/84	total_cov=71/84
RA	85	.	1	581431	0	C	T	bias_e_value=2.87336e-19	bias_p_value=1.35523e-25	consensus_reject=FREQUENCY_CUTOFF	consensus_score=291.5	fisher_strand_p_value=2.17205e-27	frequency=3.526e-01	ks_quality_p_value=1	major_base=C	major_cov=17/84	major_frequency=6.474e-01	minor_base=T	minor_cov=55/0	new_cov=55/0	polymorphism_frequency=3.526e-01	polymorphism_score=59.6	prediction=polymorphism	ref_cov=17/84	total_cov=72/84
RA	86	.	1	581467	0	G	T	bias_e_value=7.16417e-15	bias_p_value=3.37902e-21	consensus_reject=FREQUENCY_CUTOFF	consensus_score=422.0	fisher_strand_p_value=6.48692e-23	frequency=2.937e-01	ks_quality_p_value=1	major_base=G	major_cov=24/89	major_frequency=7.063e-01	minor_base=T	minor_cov=47/0	new_cov=47/0	polymorphism_frequency=2.937e-01	polymorphism_score=52.7	prediction=polymorphism	ref_cov=24/89	total_cov=72/89
RA	87	.	1	613436	0	C	A	bias_e_value=1.21356e-07	bias_p_value=5.72381e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=408.6	fisher_strand_p_value=1.63312e-15	frequency=2.519e-01	ks_quality_p_value=1	major_base=C	major_cov=74/27	major_frequency=7.481e-01	minor_base=A	minor_cov=0/34	new_cov=0/34	polymorphism_frequency=2.519e-01	polymorphism_score=26.6	prediction=polymorphism	ref_cov=74/27	total_cov=74/61
RA	88	.	1	613440	0	T	C	bias_e_value=8.40797e-05	bias_p_value=3.96566e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=376.6	fisher_strand_p_value=1.40162e-12	frequency=2.101e-01	ks_quality_p_value=1	major_base=T	major_cov=75/34	major_frequency=7.899e-01	minor_base=C	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=2.101e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=75/34	total_cov=75/64
RA	89	.	1	613448	0	G	A	bias_e_value=1.43573e-10	bias_p_value=6.77167e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=343.2	fisher_strand_p_value=1.61353e-18	frequency=2.847e-01	ks_quality_p_value=1	major_base=G	major_cov=77/26	major_frequency=7.153e-01	minor_base=A	minor_cov=0/41	new_cov=0/41	polymorphism_frequency=2.847e-01	polymorphism_score=30.1	prediction=polymorphism	ref_cov=77/26	total_cov=77/67
RA	90	.	1	613466	0	C	A	bias_e_value=1.97161e-14	bias_p_value=9.29921e-21	consensus_reject=FREQUENCY_CUTOFF	consensus_score=374.5	fisher_strand_p_value=1.82133e-22	frequency=3.333e-01	ks_quality_p_value=1	major_base=C	major_cov=76/20	major_frequency=6.667e-01	minor_base=A	minor_cov=0/48	new_cov=0/48	polymorphism_frequency=3.333e-01	polymorphism_score=60.8	prediction=polymorphism	ref_cov=76/20	total_cov=76/68
RA	91	.	1	613486	0	G	A	bias_e_value=1.13616e-14	bias_p_value=5.35876e-21	consensus_reject=FREQUENCY_CUTOFF	consensus_score=277.6	fisher_strand_p_value=1.03813e-22	frequency=3.487e-01	ks_quality_p_value=1	major_base=G	major_cov=76/23	major_frequency=6.513e-01	minor_base=A	minor_cov=0/53	new_cov=0/53	polymorphism_frequency=3.487e-01	polymorphism_score=52.6	prediction=polymorphism	ref_cov=76/23	total_cov=76/76
RA	92	.	1	613490	0	G	A	bias_e_value=9.22228e-12	bias_p_value=4.34973e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=313.1	fisher_strand_p_value=9.71396e-20	frequency=3.158e-01	ks_quality_p_value=1	major_base=G	major_cov=76/28	major_frequency=6.842e-01	minor_base=A	minor_cov=0/48	new_cov=0/48	polymorphism_frequency=3.158e-01	polymorphism_score=47.5	prediction=polymorphism	ref_cov=76/28	total_cov=76/76
RA	93	.	1	613512	0	T	C	bias_e_value=3.29208e-06	bias_p_value=1.55272e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=342.4	fisher_strand_p_value=4.9066e-14	frequency=2.517e-01	ks_quality_p_value=1	major_base=T	major_cov=72/38	major_frequency=7.483e-01	minor_base=C	minor_cov=0/37	new_cov=0/37	polymorphism_frequency=2.517e-01	polymorphism_score=19.6	prediction=polymorphism	ref_cov=72/38	total_cov=72/78
RA	94	.	1	613516	0	A	C	bias_e_value=1.11423e-07	bias_p_value=5.25533e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=339.7	fisher_strand_p_value=1.4957e-15	frequency=2.824e-01	ks_quality_p_value=1	major_base=A	major_cov=67/27	major_frequency=7.176e-01	minor_base=C	minor_cov=0/37	new_cov=0/37	polymorphism_frequency=2.824e-01	polymorphism_score=13.0	prediction=polymorphism	ref_cov=67/27	total_cov=67/74
RA	95	.	1	613520	0	G	A	bias_e_value=0.00062015	bias_p_value=2.92497e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=310.5	fisher_strand_p_value=1.13373e-11	frequency=2.238e-01	ks_quality_p_value=0.984001	major_base=G	major_cov=69/42	major_frequency=7.762e-01	minor_base=A	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=2.238e-01	polymorphism_score=20.1	prediction=polymorphism	ref_cov=69/42	total_cov=69/74
RA	96	.	1	618695	0	A	C	bias_e_value=5.01958e-13	bias_p_value=2.36751e-19	consensus_reject=FREQUENCY_CUTOFF	consensus_score=416.4	fisher_strand_p_value=4.95778e-21	frequency=3.145e-01	ks_quality_p_value=1	major_base=A	major_cov=80/29	major_frequency=6.855e-01	minor_base=C	minor_cov=0/50	new_cov=0/50	polymorphism_frequency=3.145e-01	polymorphism_score=16.6	prediction=polymorphism	ref_cov=80/29	total_cov=80/79
RA	97	.	1	618698	0	C	T	bias_e_value=2.37268e-05	bias_p_value=1.11908e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=377.9	fisher_strand_p_value=4.20359e-13	frequency=2.171e-01	ks_quality_p_value=0.89928	major_base=C	major_cov=78/41	major_frequency=7.829e-01	minor_base=T	minor_cov=0/33	new_cov=0/33	polymorphism_frequency=2.171e-01	polymorphism_score=25.7	prediction=polymorphism	ref_cov=78/41	total_cov=78/74
RA	98	.	1	618712	0	T	C	bias_e_value=1.0128e-16	bias_p_value=4.77693e-23	consensus_reject=FREQUENCY_CUTOFF	consensus_score=337.9	fisher_strand_p_value=8.46544e-25	frequency=3.243e-01	ks_quality_p_value=1	major_base=T	major_cov=83/17	major_frequency=6.757e-01	minor_base=C	minor_cov=0/48	new_cov=0/48	polymorphism_frequency=3.243e-01	polymorphism_score=18.2	prediction=polymorphism	ref_cov=83/17	total_cov=83/65
RA	99	.	1	624883	0	G	A	bias_e_value=5.35546e-09	bias_p_value=2.52593e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=275.5	fisher_strand_p_value=6.60261e-17	frequency=2.314e-01	ks_quality_p_value=1	major_base=G	major_cov=78/15	major_frequency=7.686e-01	minor_base=A	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.314e-01	polymorphism_score=29.8	prediction=polymorphism	ref_cov=78/15	total_cov=78/43
RA	100	.	1	624887	0	A	C	bias_e_value=1.04016e-07	bias_p_value=4.90595e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=350.1	fisher_strand_p_value=1.39346e-15	frequency=2.185e-01	ks_quality_p_value=1	major_base=A	major_cov=77/16	major_frequency=7.815e-01	minor_base=C	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=2.185e-01	polymorphism_score=14.5	prediction=polymorphism	ref_cov=77/16	total_cov=77/42
RA	101	.	1	645328	0	T	C	bias_e_value=8.67972e-05	bias_p_value=4.09383e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=263.8	fisher_strand_p_value=1.44861e-12	frequency=2.376e-01	ks_quality_p_value=1	major_base=T	major_cov=60/17	major_frequency=7.624e-01	minor_base=C	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.376e-01	polymorphism_score=15.4	prediction=polymorphism	ref_cov=60/17	total_cov=60/41
RA	102	.	1	646232	0	G	T	bias_e_value=3.424e-12	bias_p_value=1.61495e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=317.8	fisher_strand_p_value=3.52675e-20	frequency=3.287e-01	ks_quality_p_value=1	major_base=G	major_cov=24/72	major_frequency=6.713e-01	minor_base=T	minor_cov=47/0	new_cov=47/0	polymorphism_frequency=3.287e-01	polymorphism_score=43.9	prediction=polymorphism	ref_cov=24/72	total_cov=71/72
RA	103	.	1	665023	0	T	G	bias_e_value=1.98238e-08	bias_p_value=9.34999e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=375.6	fisher_strand_p_value=2.53305e-16	frequency=2.517e-01	ks_quality_p_value=1	major_base=T	major_cov=33/80	major_frequency=7.483e-01	minor_base=G	minor_cov=38/0	new_cov=38/0	polymorphism_frequency=2.517e-01	polymorphism_score=26.3	prediction=polymorphism	ref_cov=33/80	total_cov=71/80
RA	104	.	1	683897	0	T	G	bias_e_value=2.21164e-13	bias_p_value=1.04313e-19	consensus_reject=FREQUENCY_CUTOFF	consensus_score=274.7	fisher_strand_p_value=2.14679e-21	frequency=3.723e-01	ks_quality_p_value=1	major_base=T	major_cov=20/66	major_frequency=6.277e-01	minor_base=G	minor_cov=51/0	new_cov=51/0	polymorphism_frequency=3.723e-01	polymorphism_score=28.9	prediction=polymorphism	ref_cov=20/66	total_cov=71/66
RA	105	.	1	683924	0	T	G	bias_e_value=0.0007122	bias_p_value=3.35913e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=427.0	fisher_strand_p_value=1.28825e-11	frequency=2.308e-01	ks_quality_p_value=1	major_base=T	major_cov=51/69	major_frequency=7.692e-01	minor_base=G	minor_cov=36/0	new_cov=36/0	polymorphism_frequency=2.308e-01	polymorphism_score=27.1	prediction=polymorphism	ref_cov=51/69	total_cov=87/69
RA	106	.	1	683945	0	A	G	bias_e_value=0.000257234	bias_p_value=1.21326e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=387.9	fisher_strand_p_value=4.47147e-12	frequency=2.500e-01	ks_quality_p_value=1	major_base=A	major_cov=48/66	major_frequency=7.500e-01	minor_base=G	minor_cov=38/0	new_cov=38/0	polymorphism_frequency=2.500e-01	polymorphism_score=16.4	prediction=polymorphism	ref_cov=48/66	total_cov=86/66
RA	107	.	1	688858	0	G	A	bias_e_value=3.62417e-06	bias_p_value=1.70936e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=427.6	fisher_strand_p_value=5.41856e-14	frequency=2.045e-01	ks_quality_p_value=1	major_base=G	major_cov=50/90	major_frequency=7.955e-01	minor_base=A	minor_cov=36/0	new_cov=36/0	polymorphism_frequency=2.045e-01	polymorphism_score=29.7	prediction=polymorphism	ref_cov=50/90	total_cov=87/90
RA	108	.	1	695033	0	A	G	bias_e_value=7.04337e-12	bias_p_value=3.32204e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=405.0	fisher_strand_p_value=7.37349e-20	frequency=2.604e-01	ks_quality_p_value=1	major_base=A	major_cov=33/92	major_frequency=7.396e-01	minor_base=G	minor_cov=44/0	new_cov=44/0	polymorphism_frequency=2.604e-01	polymorphism_score=13.2	prediction=polymorphism	ref_cov=33/92	total_cov=79/93
RA	109	.	1	720079	0	T	G	bias_e_value=4.74307e-14	bias_p_value=2.23709e-20	consensus_reject=FREQUENCY_CUTOFF	consensus_score=226.1	fisher_strand_p_value=4.45975e-22	frequency=3.548e-01	ks_quality_p_value=1	major_base=T	major_cov=3/57	major_frequency=6.452e-01	minor_base=G	minor_cov=33/0	new_cov=33/0	polymorphism_frequency=3.548e-01	polymorphism_score=19.1	prediction=polymorphism	ref_cov=3/57	total_cov=36/57
RA	110	.	1	720096	0	G	T	bias_e_value=3.10448e-14	bias_p_value=1.46424e-20	consensus_reject=FREQUENCY_CUTOFF	consensus_score=228.0	fisher_strand_p_value=2.89409e-22	frequency=3.511e-01	ks_quality_p_value=1	major_base=G	major_cov=3/58	major_frequency=6.489e-01	minor_base=T	minor_cov=33/0	new_cov=33/0	polymorphism_frequency=3.511e-01	polymorphism_score=42.7	prediction=polymorphism	ref_cov=3/58	total_cov=36/58
RA	111	.	1	720111	0	C	T	bias_e_value=4.06997e-05	bias_p_value=1.91962e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=224.0	fisher_strand_p_value=6.60909e-13	frequency=2.553e-01	ks_quality_p_value=1	major_base=C	major_cov=14/56	major_frequency=7.447e-01	minor_base=T	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.553e-01	polymorphism_score=16.3	prediction=polymorphism	ref_cov=14/56	total_cov=38/56
RA	112	.	1	720116	0	C	T	bias_e_value=3.78422e-08	bias_p_value=1.78485e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=167.2	fisher_strand_p_value=4.92409e-16	frequency=3.222e-01	ks_quality_p_value=1	major_base=C	major_cov=9/52	major_frequency=6.778e-01	minor_base=T	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=3.222e-01	polymorphism_score=29.4	prediction=polymorphism	ref_cov=9/52	total_cov=38/52
RA	113	.	1	745540	0	T	C	bias_e_value=2.65428e-05	bias_p_value=1.2519e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=334.3	fisher_strand_p_value=4.2455e-13	frequency=2.195e-01	ks_quality_p_value=1	major_base=T	major_cov=71/25	major_frequency=7.805e-01	minor_base=C	minor_cov=0/27	new_cov=0/27	polymorphism_frequency=2.195e-01	polymorphism_score=20.6	prediction=polymorphism	ref_cov=71/25	total_cov=71/52
RA	114	.	1	745564	0	G	A	bias_e_value=7.91304e-06	bias_p_value=3.73222e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=309.1	fisher_strand_p_value=1.21414e-13	frequency=2.119e-01	ks_quality_p_value=1	major_base=G	major_cov=73/20	major_frequency=7.881e-01	minor_base=A	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.119e-01	polymorphism_score=17.2	prediction=polymorphism	ref_cov=73/20	total_cov=73/45
RA	115	.	1	757221	0	T	C	bias_e_value=0.110902	bias_p_value=5.23075e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=299.3	fisher_strand_p_value=2.51465e-09	frequency=2.248e-01	ks_quality_p_value=1	major_base=T	major_cov=57/43	major_frequency=7.752e-01	minor_base=C	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=2.248e-01	polymorphism_score=13.7	prediction=polymorphism	ref_cov=57/43	total_cov=57/73
RA	116	.	1	784164	0	A	T	bias_e_value=9.42836e-13	bias_p_value=4.44693e-19	consensus_reject=FREQUENCY_CUTOFF	consensus_score=211.3	fisher_strand_p_value=9.43959e-21	frequency=3.833e-01	ks_quality_p_value=1	major_base=A	major_cov=14/60	major_frequency=6.167e-01	minor_base=T	minor_cov=46/0	new_cov=46/0	polymorphism_frequency=3.833e-01	polymorphism_score=55.4	prediction=polymorphism	ref_cov=14/60	total_cov=60/60
RA	117	.	1	784183	0	C	T	bias_e_value=1.72313e-10	bias_p_value=8.12725e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=197.2	fisher_strand_p_value=1.94519e-18	frequency=3.540e-01	ks_quality_p_value=1	major_base=C	major_cov=15/58	major_frequency=6.460e-01	minor_base=T	minor_cov=40/0	new_cov=40/0	polymorphism_frequency=3.540e-01	polymorphism_score=37.0	prediction=polymorphism	ref_cov=15/58	total_cov=55/58
RA	118	.	1	784211	0	G	T	bias_e_value=0.638465	bias_p_value=3.01135e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=237.6	fisher_strand_p_value=1.58844e-08	frequency=2.907e-01	ks_quality_p_value=1	major_base=G	major_cov=23/38	major_frequency=7.093e-01	minor_base=T	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.907e-01	polymorphism_score=16.0	prediction=polymorphism	ref_cov=23/38	total_cov=48/38
RA	119	.	1	805541	0	A	C	bias_e_value=3.30501e-14	bias_p_value=1.55883e-20	consensus_reject=FREQUENCY_CUTOFF	consensus_score=337.8	fisher_strand_p_value=3.08493e-22	frequency=2.917e-01	ks_quality_p_value=1	major_base=A	major_cov=76/9	major_frequency=7.083e-01	minor_base=C	minor_cov=0/35	new_cov=0/35	polymorphism_frequency=2.917e-01	polymorphism_score=14.6	prediction=polymorphism	ref_cov=76/9	total_cov=76/45
RA	120	.	1	809123	0	T	G	bias_e_value=1.16409e-11	bias_p_value=5.4905e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=279.7	fisher_strand_p_value=1.23271e-19	frequency=2.913e-01	ks_quality_p_value=1	major_base=T	major_cov=7/66	major_frequency=7.087e-01	minor_base=G	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=2.913e-01	polymorphism_score=13.0	prediction=polymorphism	ref_cov=7/66	total_cov=37/66
RA	121	.	1	809125	0	C	G	bias_e_value=1.07685e-06	bias_p_value=5.079e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=267.1	fisher_strand_p_value=1.54853e-14	frequency=2.381e-01	ks_quality_p_value=1	major_base=C	major_cov=14/66	major_frequency=7.619e-01	minor_base=G	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.381e-01	polymorphism_score=18.2	prediction=polymorphism	ref_cov=14/66	total_cov=39/66
RA	122	.	1	809163	0	G	A	bias_e_value=0.000708368	bias_p_value=3.34105e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=271.0	fisher_strand_p_value=1.28104e-11	frequency=2.523e-01	ks_quality_p_value=1	major_base=G	major_cov=26/57	major_frequency=7.477e-01	minor_base=A	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=2.523e-01	polymorphism_score=22.1	prediction=polymorphism	ref_cov=26/57	total_cov=54/57
RA	123	.	1	809178	0	G	A	bias_e_value=1.50465e-05	bias_p_value=7.09677e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=256.1	fisher_strand_p_value=2.35968e-13	frequency=2.703e-01	ks_quality_p_value=1	major_base=G	major_cov=22/59	major_frequency=7.297e-01	minor_base=A	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=2.703e-01	polymorphism_score=34.5	prediction=polymorphism	ref_cov=22/59	total_cov=52/59
RA	124	.	1	812973	0	T	G	bias_e_value=3.11154e-11	bias_p_value=1.46757e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=240.1	fisher_strand_p_value=3.3711e-19	frequency=3.146e-01	ks_quality_p_value=1	major_base=T	major_cov=4/57	major_frequency=6.854e-01	minor_base=G	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=3.146e-01	polymorphism_score=11.5	prediction=polymorphism	ref_cov=4/57	total_cov=32/57
RA	125	.	1	812980	0	T	C	bias_e_value=4.74415e-07	bias_p_value=2.2376e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=232.0	fisher_strand_p_value=6.69831e-15	frequency=2.526e-01	ks_quality_p_value=0.992909	major_base=T	major_cov=10/61	major_frequency=7.474e-01	minor_base=C	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.526e-01	polymorphism_score=19.1	prediction=polymorphism	ref_cov=10/61	total_cov=34/61
RA	126	.	1	812996	0	G	A	bias_e_value=3.1905e-07	bias_p_value=1.50482e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=243.5	fisher_strand_p_value=4.41906e-15	frequency=2.551e-01	ks_quality_p_value=1	major_base=G	major_cov=11/62	major_frequency=7.449e-01	minor_base=A	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.551e-01	polymorphism_score=20.5	prediction=polymorphism	ref_cov=11/62	total_cov=36/62
RA	127	.	1	816115	0	G	A	bias_e_value=3.16683e-05	bias_p_value=1.49365e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=322.2	fisher_strand_p_value=5.09692e-13	frequency=2.090e-01	ks_quality_p_value=1	major_base=G	major_cov=76/30	major_frequency=7.910e-01	minor_base=A	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.090e-01	polymorphism_score=18.9	prediction=polymorphism	ref_cov=76/30	total_cov=76/60
RA	128	.	1	816119	0	G	A	bias_e_value=1.51952e-07	bias_p_value=7.16688e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=305.1	fisher_strand_p_value=2.06817e-15	frequency=2.426e-01	ks_quality_p_value=0.995299	major_base=G	major_cov=76/27	major_frequency=7.574e-01	minor_base=A	minor_cov=0/33	new_cov=0/33	polymorphism_frequency=2.426e-01	polymorphism_score=28.0	prediction=polymorphism	ref_cov=76/27	total_cov=76/60
RA	129	.	1	816139	0	T	C	bias_e_value=2.28012e-06	bias_p_value=1.07543e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=337.8	fisher_strand_p_value=3.35812e-14	frequency=2.324e-01	ks_quality_p_value=1	major_base=T	major_cov=76/33	major_frequency=7.676e-01	minor_base=C	minor_cov=0/33	new_cov=0/33	polymorphism_frequency=2.324e-01	polymorphism_score=24.1	prediction=polymorphism	ref_cov=76/33	total_cov=76/68
RA	130	.	1	820350	0	T	A	bias_e_value=0.00143366	bias_p_value=6.76191e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=212.6	fisher_strand_p_value=2.66771e-11	frequency=2.727e-01	ks_quality_p_value=1	major_base=T	major_cov=16/48	major_frequency=7.273e-01	minor_base=A	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.727e-01	polymorphism_score=13.0	prediction=polymorphism	ref_cov=16/48	total_cov=40/48
RA	131	.	1	820354	0	G	A	bias_e_value=1.25896e-10	bias_p_value=5.93796e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=144.1	fisher_strand_p_value=1.41035e-18	frequency=3.864e-01	ks_quality_p_value=1	major_base=G	major_cov=6/48	major_frequency=6.136e-01	minor_base=A	minor_cov=34/0	new_cov=34/0	polymorphism_frequency=3.864e-01	polymorphism_score=43.4	prediction=polymorphism	ref_cov=6/48	total_cov=40/48
RA	132	.	1	820358	0	T	A	bias_e_value=0.0023523	bias_p_value=1.10947e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=212.7	fisher_strand_p_value=4.46801e-11	frequency=2.706e-01	ks_quality_p_value=1	major_base=T	major_cov=15/47	major_frequency=7.294e-01	minor_base=A	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.706e-01	polymorphism_score=11.9	prediction=polymorphism	ref_cov=15/47	total_cov=38/47
RA	133	.	1	820371	0	G	T	bias_e_value=0.10117	bias_p_value=4.77173e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=258.9	fisher_strand_p_value=2.28339e-09	frequency=2.442e-01	ks_quality_p_value=1	major_base=G	major_cov=19/46	major_frequency=7.558e-01	minor_base=T	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.442e-01	polymorphism_score=12.0	prediction=polymorphism	ref_cov=19/46	total_cov=40/46
RA	134	.	1	825780	0	G	T	bias_e_value=1.76789e-05	bias_p_value=8.33835e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=288.7	fisher_strand_p_value=2.78797e-13	frequency=2.474e-01	ks_quality_p_value=1	major_base=G	major_cov=59/14	major_frequency=7.526e-01	minor_base=T	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.474e-01	polymorphism_score=23.7	prediction=polymorphism	ref_cov=59/14	total_cov=59/39
RA	135	.	1	825785	0	A	T	bias_e_value=0.0125858	bias_p_value=5.93613e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=297.3	fisher_strand_p_value=2.57184e-10	frequency=2.000e-01	ks_quality_p_value=1	major_base=A	major_cov=60/20	major_frequency=8.000e-01	minor_base=T	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.000e-01	polymorphism_score=11.5	prediction=polymorphism	ref_cov=60/20	total_cov=60/40
RA	136	.	1	826434	0	C	T	bias_e_value=2.5524e-09	bias_p_value=1.20385e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=164.8	fisher_strand_p_value=3.12035e-17	frequency=3.714e-01	ks_quality_p_value=0.988808	major_base=C	major_cov=14/52	major_frequency=6.286e-01	minor_base=T	minor_cov=39/0	new_cov=39/0	polymorphism_frequency=3.714e-01	polymorphism_score=46.8	prediction=polymorphism	ref_cov=14/52	total_cov=55/52
RA	137	.	1	826446	0	T	G	bias_e_value=1.46721e-07	bias_p_value=6.92016e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=255.6	fisher_strand_p_value=1.98553e-15	frequency=3.604e-01	ks_quality_p_value=1	major_base=T	major_cov=20/51	major_frequency=6.396e-01	minor_base=G	minor_cov=40/0	new_cov=40/0	polymorphism_frequency=3.604e-01	polymorphism_score=19.8	prediction=polymorphism	ref_cov=20/51	total_cov=61/51
RA	138	.	1	826462	0	A	C	bias_e_value=6.75753e-05	bias_p_value=3.18722e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=276.7	fisher_strand_p_value=1.11754e-12	frequency=2.920e-01	ks_quality_p_value=1	major_base=A	major_cov=26/54	major_frequency=7.080e-01	minor_base=C	minor_cov=33/0	new_cov=33/0	polymorphism_frequency=2.920e-01	polymorphism_score=26.0	prediction=polymorphism	ref_cov=26/54	total_cov=61/54
RA	139	.	1	826472	0	C	T	bias_e_value=0.0686725	bias_p_value=3.23897e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=303.4	fisher_strand_p_value=1.52033e-09	frequency=2.167e-01	ks_quality_p_value=1	major_base=C	major_cov=36/58	major_frequency=7.833e-01	minor_base=T	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.167e-01	polymorphism_score=18.1	prediction=polymorphism	ref_cov=36/58	total_cov=62/58
RA	140	.	1	826483	0	T	C	bias_e_value=3.83787	bias_p_value=1.81015e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=316.0	fisher_strand_p_value=1.06112e-07	frequency=2.101e-01	ks_quality_p_value=1	major_base=T	major_cov=36/58	major_frequency=7.899e-01	minor_base=C	minor_cov=24/1	new_cov=24/1	polymorphism_frequency=2.101e-01	polymorphism_score=14.2	prediction=polymorphism	ref_cov=36/58	total_cov=62/59
RA	141	.	1	826496	0	A	G	bias_e_value=0.000134592	bias_p_value=6.34808e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=314.8	fisher_strand_p_value=2.28303e-12	frequency=2.521e-01	ks_quality_p_value=1	major_base=A	major_cov=28/61	major_frequency=7.479e-01	minor_base=G	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=2.521e-01	polymorphism_score=14.2	prediction=polymorphism	ref_cov=28/61	total_cov=58/61
RA	142	.	1	826515	0	C	T	bias_e_value=7.42784e-05	bias_p_value=3.50337e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=275.4	fisher_strand_p_value=1.23263e-12	frequency=2.522e-01	ks_quality_p_value=1	major_base=C	major_cov=25/61	major_frequency=7.478e-01	minor_base=T	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=2.522e-01	polymorphism_score=33.5	prediction=polymorphism	ref_cov=25/61	total_cov=54/61
RA	143	.	1	853015	0	A	C	bias_e_value=1.95004e-05	bias_p_value=9.19747e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=255.8	fisher_strand_p_value=3.08569e-13	frequency=3.265e-01	ks_quality_p_value=1	major_base=A	major_cov=48/18	major_frequency=6.735e-01	minor_base=C	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=3.265e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=48/18	total_cov=48/50
RA	144	.	1	866834	0	A	G	bias_e_value=5.50412	bias_p_value=2.59605e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=267.0	fisher_strand_p_value=1.55681e-07	frequency=2.016e-01	ks_quality_p_value=1	major_base=A	major_cov=47/52	major_frequency=7.984e-01	minor_base=G	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.016e-01	polymorphism_score=23.7	prediction=polymorphism	ref_cov=47/52	total_cov=72/52
RA	145	.	1	866868	0	T	G	bias_e_value=0.00205281	bias_p_value=9.68219e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=322.0	fisher_strand_p_value=3.87701e-11	frequency=2.786e-01	ks_quality_p_value=1	major_base=T	major_cov=45/56	major_frequency=7.214e-01	minor_base=G	minor_cov=39/0	new_cov=39/0	polymorphism_frequency=2.786e-01	polymorphism_score=21.2	prediction=polymorphism	ref_cov=45/56	total_cov=84/56
RA	146	.	1	881645	0	T	G	bias_e_value=0.00689067	bias_p_value=3.25002e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=195.1	fisher_strand_p_value=1.37071e-10	frequency=2.892e-01	ks_quality_p_value=1	major_base=T	major_cov=16/43	major_frequency=7.108e-01	minor_base=G	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.892e-01	polymorphism_score=12.4	prediction=polymorphism	ref_cov=16/43	total_cov=40/43
RA	147	.	1	894165	0	C	A	consensus_score=103.0	frequency=1	major_base=A	major_cov=9/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/17
RA	148	.	1	903068	0	C	T	bias_e_value=4.20988e-06	bias_p_value=1.98561e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=205.6	fisher_strand_p_value=6.32528e-14	frequency=2.353e-01	ks_quality_p_value=1	major_base=C	major_cov=58/7	major_frequency=7.647e-01	minor_base=T	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.353e-01	polymorphism_score=15.5	prediction=polymorphism	ref_cov=58/7	total_cov=58/27
RA	149	.	1	923636	0	G	A	bias_e_value=1.19635e-12	bias_p_value=5.64264e-19	consensus_reject=FREQUENCY_CUTOFF	consensus_score=233.8	fisher_strand_p_value=1.20399e-20	frequency=3.217e-01	ks_quality_p_value=1	major_base=G	major_cov=11/67	major_frequency=6.783e-01	minor_base=A	minor_cov=37/0	new_cov=37/0	polymorphism_frequency=3.217e-01	polymorphism_score=40.1	prediction=polymorphism	ref_cov=11/67	total_cov=48/67
RA	150	.	1	923639	0	C	A	bias_e_value=1.67609e-05	bias_p_value=7.90535e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=318.0	fisher_strand_p_value=2.63833e-13	frequency=2.389e-01	ks_quality_p_value=1	major_base=C	major_cov=21/65	major_frequency=7.611e-01	minor_base=A	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=2.389e-01	polymorphism_score=15.3	prediction=polymorphism	ref_cov=21/65	total_cov=48/65
RA	151	.	1	923641	0	G	A	bias_e_value=0.00231062	bias_p_value=1.08982e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=276.8	fisher_strand_p_value=4.38555e-11	frequency=2.072e-01	ks_quality_p_value=1	major_base=G	major_cov=24/64	major_frequency=7.928e-01	minor_base=A	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.072e-01	polymorphism_score=18.1	prediction=polymorphism	ref_cov=24/64	total_cov=48/64
RA	152	.	1	923650	0	A	T	bias_e_value=1.59253e-08	bias_p_value=7.51123e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=286.0	fisher_strand_p_value=2.02257e-16	frequency=2.821e-01	ks_quality_p_value=1	major_base=A	major_cov=18/66	major_frequency=7.179e-01	minor_base=T	minor_cov=33/0	new_cov=33/0	polymorphism_frequency=2.821e-01	polymorphism_score=35.2	prediction=polymorphism	ref_cov=18/66	total_cov=51/66
RA	153	.	1	932547	0	T	G	bias_e_value=26.9266	bias_p_value=1.27001e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=315.2	fisher_strand_p_value=8.47765e-07	frequency=2.193e-01	ks_quality_p_value=1	major_base=T	major_cov=45/44	major_frequency=7.807e-01	minor_base=G	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.193e-01	polymorphism_score=11.1	prediction=polymorphism	ref_cov=45/44	total_cov=71/44
RA	154	.	1	942477	0	C	T	bias_e_value=2.19571e-13	bias_p_value=1.03562e-19	consensus_reject=FREQUENCY_CUTOFF	consensus_score=239.2	fisher_strand_p_value=2.131e-21	frequency=3.115e-01	ks_quality_p_value=1	major_base=C	major_cov=12/72	major_frequency=6.885e-01	minor_base=T	minor_cov=38/0	new_cov=38/0	polymorphism_frequency=3.115e-01	polymorphism_score=37.3	prediction=polymorphism	ref_cov=12/72	total_cov=50/72
RA	155	.	1	942480	0	A	G	bias_e_value=3.32172e-08	bias_p_value=1.56671e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=279.3	fisher_strand_p_value=4.30635e-16	frequency=2.500e-01	ks_quality_p_value=1	major_base=A	major_cov=18/72	major_frequency=7.500e-01	minor_base=G	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=2.500e-01	polymorphism_score=26.0	prediction=polymorphism	ref_cov=18/72	total_cov=50/72
RA	156	.	1	942509	0	T	G	bias_e_value=1.25192e-07	bias_p_value=5.90472e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=375.3	fisher_strand_p_value=1.68628e-15	frequency=2.519e-01	ks_quality_p_value=1	major_base=T	major_cov=25/73	major_frequency=7.481e-01	minor_base=G	minor_cov=33/0	new_cov=33/0	polymorphism_frequency=2.519e-01	polymorphism_score=21.3	prediction=polymorphism	ref_cov=25/73	total_cov=59/73
RA	157	.	1	947166	0	A	G	bias_e_value=0.00945874	bias_p_value=4.46126e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=331.7	fisher_strand_p_value=1.90818e-10	frequency=2.208e-01	ks_quality_p_value=1	major_base=A	major_cov=53/67	major_frequency=7.792e-01	minor_base=G	minor_cov=34/0	new_cov=34/0	polymorphism_frequency=2.208e-01	polymorphism_score=18.5	prediction=polymorphism	ref_cov=53/67	total_cov=87/67
RA	158	.	1	949594	0	C	T	bias_e_value=1.19911e-06	bias_p_value=5.65566e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=341.5	fisher_strand_p_value=1.7302e-14	frequency=2.500e-01	ks_quality_p_value=1	major_base=C	major_cov=39/75	major_frequency=7.500e-01	minor_base=T	minor_cov=38/0	new_cov=38/0	polymorphism_frequency=2.500e-01	polymorphism_score=26.4	prediction=polymorphism	ref_cov=39/75	total_cov=77/75
RA	159	.	1	994245	0	T	G	bias_e_value=8.81719e-08	bias_p_value=4.15867e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=297.3	fisher_strand_p_value=1.17553e-15	frequency=2.407e-01	ks_quality_p_value=1	major_base=T	major_cov=69/13	major_frequency=7.593e-01	minor_base=G	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=2.407e-01	polymorphism_score=12.9	prediction=polymorphism	ref_cov=69/13	total_cov=69/39
RA	160	.	1	994262	0	C	T	bias_e_value=6.09842e-12	bias_p_value=2.87635e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=187.1	fisher_strand_p_value=6.41687e-20	frequency=3.010e-01	ks_quality_p_value=0.991675	major_base=C	major_cov=65/7	major_frequency=6.990e-01	minor_base=T	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=3.010e-01	polymorphism_score=31.1	prediction=polymorphism	ref_cov=65/7	total_cov=65/38
RA	161	.	1	1049996	0	T	G	bias_e_value=0.0677088	bias_p_value=3.19352e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=221.0	fisher_strand_p_value=1.49796e-09	frequency=2.828e-01	ks_quality_p_value=1	major_base=T	major_cov=27/44	major_frequency=7.172e-01	minor_base=G	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=2.828e-01	polymorphism_score=14.0	prediction=polymorphism	ref_cov=27/44	total_cov=55/44
RA	162	.	1	1056846	0	T	G	bias_e_value=0.00325009	bias_p_value=1.53292e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=323.1	fisher_strand_p_value=9.99633e-11	frequency=2.097e-01	ks_quality_p_value=0.62605	major_base=T	major_cov=65/33	major_frequency=7.903e-01	minor_base=G	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=2.097e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=65/33	total_cov=65/60
RA	163	.	1	1056848	0	C	G	bias_e_value=0.00519491	bias_p_value=2.4502e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=333.3	fisher_strand_p_value=2.435e-10	frequency=2.080e-01	ks_quality_p_value=0.419174	major_base=C	major_cov=64/35	major_frequency=7.920e-01	minor_base=G	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=2.080e-01	polymorphism_score=24.7	prediction=polymorphism	ref_cov=64/35	total_cov=64/61
RA	164	.	1	1056851	0	G	A	bias_e_value=1.89873e-09	bias_p_value=8.95545e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=221.3	fisher_strand_p_value=2.27753e-17	frequency=3.197e-01	ks_quality_p_value=1	major_base=G	major_cov=63/20	major_frequency=6.803e-01	minor_base=A	minor_cov=0/39	new_cov=0/39	polymorphism_frequency=3.197e-01	polymorphism_score=31.4	prediction=polymorphism	ref_cov=63/20	total_cov=63/59
RA	165	.	1	1064127	0	A	T	bias_e_value=0.104584	bias_p_value=4.93276e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=180.4	fisher_strand_p_value=2.36439e-09	frequency=2.308e-01	ks_quality_p_value=1	major_base=A	major_cov=8/42	major_frequency=7.692e-01	minor_base=T	minor_cov=15/0	new_cov=15/0	polymorphism_frequency=2.308e-01	polymorphism_score=11.9	prediction=polymorphism	ref_cov=8/42	total_cov=24/42
RA	166	.	1	1097218	0	G	A	bias_e_value=0.151155	bias_p_value=7.1293e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=321.7	fisher_strand_p_value=3.48184e-09	frequency=2.000e-01	ks_quality_p_value=1	major_base=G	major_cov=59/33	major_frequency=8.000e-01	minor_base=A	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.000e-01	polymorphism_score=15.0	prediction=polymorphism	ref_cov=59/33	total_cov=59/56
RA	167	.	1	1108147	0	G	A	bias_e_value=2.4517	bias_p_value=1.15635e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=238.0	fisher_strand_p_value=6.59478e-08	frequency=2.020e-01	ks_quality_p_value=1	major_base=G	major_cov=29/50	major_frequency=7.980e-01	minor_base=A	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.020e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=29/50	total_cov=49/50
RA	168	.	1	1108153	0	G	A	bias_e_value=0.000158299	bias_p_value=7.46627e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=197.9	fisher_strand_p_value=2.70153e-12	frequency=2.857e-01	ks_quality_p_value=1	major_base=G	major_cov=19/51	major_frequency=7.143e-01	minor_base=A	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=2.857e-01	polymorphism_score=23.9	prediction=polymorphism	ref_cov=19/51	total_cov=47/51
RA	169	.	1	1140982	0	A	C	bias_e_value=1.22826e-05	bias_p_value=5.79317e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=234.7	fisher_strand_p_value=1.91288e-13	frequency=3.061e-01	ks_quality_p_value=1	major_base=A	major_cov=51/17	major_frequency=6.939e-01	minor_base=C	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=3.061e-01	polymorphism_score=11.5	prediction=polymorphism	ref_cov=51/17	total_cov=51/48
RA	170	.	1	1142178	0	G	A	bias_e_value=3.54194e-08	bias_p_value=1.67057e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=200.0	fisher_strand_p_value=4.6002e-16	frequency=3.125e-01	ks_quality_p_value=1	major_base=G	major_cov=11/55	major_frequency=6.875e-01	minor_base=A	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=3.125e-01	polymorphism_score=27.3	prediction=polymorphism	ref_cov=11/55	total_cov=41/55
RA	171	.	1	1151614	0	C	T	bias_e_value=2.95606e-05	bias_p_value=1.39424e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=355.0	fisher_strand_p_value=4.74615e-13	frequency=2.071e-01	ks_quality_p_value=1	major_base=C	major_cov=33/78	major_frequency=7.929e-01	minor_base=T	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=2.071e-01	polymorphism_score=16.6	prediction=polymorphism	ref_cov=33/78	total_cov=62/78
RA	172	.	1	1199771	0	C	T	bias_e_value=6.53277e-09	bias_p_value=3.08121e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=239.6	fisher_strand_p_value=8.09728e-17	frequency=2.115e-01	ks_quality_p_value=1	major_base=C	major_cov=7/75	major_frequency=7.885e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.115e-01	polymorphism_score=11.2	prediction=polymorphism	ref_cov=7/75	total_cov=29/76
RA	173	.	1	1223631	0	C	T	bias_e_value=1.58978e-05	bias_p_value=7.49827e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=264.7	fisher_strand_p_value=2.49791e-13	frequency=2.136e-01	ks_quality_p_value=1	major_base=C	major_cov=14/67	major_frequency=7.864e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.136e-01	polymorphism_score=13.1	prediction=polymorphism	ref_cov=14/67	total_cov=36/67
RA	174	.	1	1228335	0	A	C	bias_e_value=5.26079e-08	bias_p_value=2.48128e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=337.3	fisher_strand_p_value=6.91002e-16	frequency=2.581e-01	ks_quality_p_value=1	major_base=A	major_cov=71/21	major_frequency=7.419e-01	minor_base=C	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=2.581e-01	polymorphism_score=15.1	prediction=polymorphism	ref_cov=71/21	total_cov=71/54
RA	175	.	1	1269153	0	A	G	bias_e_value=2.17473e-06	bias_p_value=1.02572e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=253.6	fisher_strand_p_value=3.19802e-14	frequency=2.845e-01	ks_quality_p_value=1	major_base=A	major_cov=23/60	major_frequency=7.155e-01	minor_base=G	minor_cov=33/0	new_cov=33/0	polymorphism_frequency=2.845e-01	polymorphism_score=10.4	prediction=polymorphism	ref_cov=23/60	total_cov=56/60
RA	176	.	1	1279097	0	C	T	bias_e_value=1.80611e-09	bias_p_value=8.51862e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=239.0	fisher_strand_p_value=2.16361e-17	frequency=2.895e-01	ks_quality_p_value=1	major_base=C	major_cov=66/15	major_frequency=7.105e-01	minor_base=T	minor_cov=0/33	new_cov=0/33	polymorphism_frequency=2.895e-01	polymorphism_score=34.3	prediction=polymorphism	ref_cov=66/15	total_cov=66/48
RA	177	.	1	1279109	0	G	A	bias_e_value=1.25118e-05	bias_p_value=5.90123e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=250.3	fisher_strand_p_value=1.9498e-13	frequency=2.435e-01	ks_quality_p_value=1	major_base=G	major_cov=65/22	major_frequency=7.565e-01	minor_base=A	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.435e-01	polymorphism_score=20.9	prediction=polymorphism	ref_cov=65/22	total_cov=65/50
RA	178	.	1	1279113	0	A	T	bias_e_value=0.0014836	bias_p_value=6.99749e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=308.5	fisher_strand_p_value=2.76454e-11	frequency=2.069e-01	ks_quality_p_value=1	major_base=A	major_cov=66/26	major_frequency=7.931e-01	minor_base=T	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.069e-01	polymorphism_score=16.3	prediction=polymorphism	ref_cov=66/26	total_cov=66/50
RA	179	.	1	1297160	0	T	C	bias_e_value=1.74822	bias_p_value=8.24555e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=136.2	fisher_strand_p_value=4.6083e-08	frequency=3.333e-01	ks_quality_p_value=1	major_base=T	major_cov=29/13	major_frequency=6.667e-01	minor_base=C	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=3.333e-01	polymorphism_score=11.1	prediction=polymorphism	ref_cov=29/13	total_cov=29/34
RA	180	.	1	1310424	0	G	A	bias_e_value=0.000271709	bias_p_value=1.28153e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=312.4	fisher_strand_p_value=4.73301e-12	frequency=2.126e-01	ks_quality_p_value=1	major_base=G	major_cov=70/30	major_frequency=7.874e-01	minor_base=A	minor_cov=0/27	new_cov=0/27	polymorphism_frequency=2.126e-01	polymorphism_score=17.6	prediction=polymorphism	ref_cov=70/30	total_cov=70/57
RA	181	.	1	1321302	0	C	T	bias_e_value=0.0318579	bias_p_value=1.50259e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=254.8	fisher_strand_p_value=6.79614e-10	frequency=2.500e-01	ks_quality_p_value=1	major_base=C	major_cov=32/52	major_frequency=7.500e-01	minor_base=T	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=2.500e-01	polymorphism_score=17.2	prediction=polymorphism	ref_cov=32/52	total_cov=60/52
RA	182	.	1	1322222	0	T	G	bias_e_value=6.69416e-16	bias_p_value=3.15733e-22	consensus_reject=FREQUENCY_CUTOFF	consensus_score=218.1	fisher_strand_p_value=5.79269e-24	frequency=4.370e-01	ks_quality_p_value=1	major_base=T	major_cov=10/57	major_frequency=5.630e-01	minor_base=G	minor_cov=52/0	new_cov=52/0	polymorphism_frequency=4.370e-01	polymorphism_score=18.1	prediction=polymorphism	ref_cov=10/57	total_cov=62/57
RA	183	.	1	1343550	0	C	A	bias_e_value=4.0161	bias_p_value=1.89421e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=227.0	fisher_strand_p_value=2.06289e-07	frequency=2.200e-01	ks_quality_p_value=0.539803	major_base=C	major_cov=45/33	major_frequency=7.800e-01	minor_base=A	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.200e-01	polymorphism_score=14.6	prediction=polymorphism	ref_cov=45/33	total_cov=45/58
RA	184	.	1	1347062	0	T	G	bias_e_value=5.7851e-09	bias_p_value=2.72857e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=333.5	fisher_strand_p_value=7.14711e-17	frequency=2.623e-01	ks_quality_p_value=1	major_base=T	major_cov=18/72	major_frequency=7.377e-01	minor_base=G	minor_cov=32/0	new_cov=32/0	polymorphism_frequency=2.623e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=18/72	total_cov=50/72
RA	185	.	1	1347655	0	T	G	bias_e_value=0.0165713	bias_p_value=7.81595e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=315.7	fisher_strand_p_value=3.44529e-10	frequency=2.155e-01	ks_quality_p_value=0.995275	major_base=T	major_cov=60/31	major_frequency=7.845e-01	minor_base=G	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.155e-01	polymorphism_score=17.0	prediction=polymorphism	ref_cov=60/31	total_cov=60/56
RA	186	.	1	1347658	0	C	A	bias_e_value=1.00989e-06	bias_p_value=4.76321e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=320.4	fisher_strand_p_value=1.44932e-14	frequency=2.920e-01	ks_quality_p_value=1	major_base=C	major_cov=59/21	major_frequency=7.080e-01	minor_base=A	minor_cov=0/33	new_cov=0/33	polymorphism_frequency=2.920e-01	polymorphism_score=27.3	prediction=polymorphism	ref_cov=59/21	total_cov=59/54
RA	187	.	1	1347663	0	C	T	bias_e_value=2.72327e-05	bias_p_value=1.28444e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=245.9	fisher_strand_p_value=4.35978e-13	frequency=2.743e-01	ks_quality_p_value=1	major_base=C	major_cov=58/24	major_frequency=7.257e-01	minor_base=T	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=2.743e-01	polymorphism_score=34.7	prediction=polymorphism	ref_cov=58/24	total_cov=58/55
RA	188	.	1	1347683	0	A	T	bias_e_value=0.0135913	bias_p_value=6.41041e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=289.9	fisher_strand_p_value=2.78703e-10	frequency=2.232e-01	ks_quality_p_value=1	major_base=A	major_cov=58/29	major_frequency=7.768e-01	minor_base=T	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.232e-01	polymorphism_score=14.8	prediction=polymorphism	ref_cov=58/29	total_cov=59/54
RA	189	.	1	1348869	0	G	T	bias_e_value=0.00534536	bias_p_value=2.52116e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=386.7	fisher_strand_p_value=1.06737e-10	frequency=2.071e-01	ks_quality_p_value=0.985182	major_base=G	major_cov=69/42	major_frequency=7.929e-01	minor_base=T	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=2.071e-01	polymorphism_score=13.4	prediction=polymorphism	ref_cov=69/42	total_cov=69/72
RA	190	.	1	1354113	0	C	T	bias_e_value=2.34665e-10	bias_p_value=1.10681e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=258.3	fisher_strand_p_value=2.6872e-18	frequency=2.743e-01	ks_quality_p_value=0.993331	major_base=C	major_cov=70/12	major_frequency=7.257e-01	minor_base=T	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=2.743e-01	polymorphism_score=25.5	prediction=polymorphism	ref_cov=70/12	total_cov=70/43
RA	191	.	1	1355638	0	G	T	bias_e_value=4.71664e-05	bias_p_value=2.22463e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=251.9	fisher_strand_p_value=8.21858e-13	frequency=2.500e-01	ks_quality_p_value=0.936864	major_base=G	major_cov=56/13	major_frequency=7.500e-01	minor_base=T	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.500e-01	polymorphism_score=17.9	prediction=polymorphism	ref_cov=56/13	total_cov=56/36
RA	192	.	1	1355665	0	C	A	bias_e_value=3.75543e-08	bias_p_value=1.77127e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=234.2	fisher_strand_p_value=4.88557e-16	frequency=3.034e-01	ks_quality_p_value=1	major_base=C	major_cov=54/8	major_frequency=6.966e-01	minor_base=A	minor_cov=0/27	new_cov=0/27	polymorphism_frequency=3.034e-01	polymorphism_score=25.5	prediction=polymorphism	ref_cov=54/8	total_cov=54/35
RA	193	.	1	1355689	0	T	A	bias_e_value=0.00370625	bias_p_value=1.74807e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=232.1	fisher_strand_p_value=7.17669e-11	frequency=2.340e-01	ks_quality_p_value=1	major_base=T	major_cov=54/18	major_frequency=7.660e-01	minor_base=A	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.340e-01	polymorphism_score=15.3	prediction=polymorphism	ref_cov=54/18	total_cov=54/40
RA	194	.	1	1370953	0	G	T	bias_e_value=34.7314	bias_p_value=1.63812e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=123.5	fisher_strand_p_value=1.13953e-06	frequency=3.571e-01	ks_quality_p_value=0.977402	major_base=G	major_cov=21/24	major_frequency=6.429e-01	minor_base=T	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=3.571e-01	polymorphism_score=21.6	prediction=polymorphism	ref_cov=21/24	total_cov=46/24
RA	195	.	1	1370973	0	T	G	bias_e_value=280.672	bias_p_value=0.00013238	consensus_reject=FREQUENCY_CUTOFF	consensus_score=96.5	fisher_strand_p_value=1.06315e-05	frequency=3.750e-01	ks_quality_p_value=1	major_base=T	major_cov=20/20	major_frequency=6.250e-01	minor_base=G	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=3.750e-01	polymorphism_score=13.4	prediction=polymorphism	ref_cov=20/20	total_cov=47/20
RA	196	.	1	1376855	0	C	A	bias_e_value=4.10869e-07	bias_p_value=1.93788e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=228.5	fisher_strand_p_value=5.73469e-15	frequency=2.892e-01	ks_quality_p_value=1	major_base=C	major_cov=52/7	major_frequency=7.108e-01	minor_base=A	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.892e-01	polymorphism_score=15.1	prediction=polymorphism	ref_cov=52/7	total_cov=52/31
RA	197	.	1	1394839	0	C	T	bias_e_value=0.0492663	bias_p_value=2.32367e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=285.2	fisher_strand_p_value=1.07316e-09	frequency=2.035e-01	ks_quality_p_value=1	major_base=C	major_cov=60/30	major_frequency=7.965e-01	minor_base=T	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.035e-01	polymorphism_score=15.0	prediction=polymorphism	ref_cov=60/30	total_cov=60/54
RA	198	.	1	1428662	0	T	G	bias_e_value=0.000421481	bias_p_value=1.98793e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=321.8	fisher_strand_p_value=7.4677e-12	frequency=2.182e-01	ks_quality_p_value=1	major_base=T	major_cov=22/64	major_frequency=7.818e-01	minor_base=G	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.182e-01	polymorphism_score=10.3	prediction=polymorphism	ref_cov=22/64	total_cov=46/64
RA	199	.	1	1430083	0	C	A	bias_e_value=0.000200519	bias_p_value=9.45758e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=124.0	fisher_strand_p_value=3.4527e-12	frequency=3.200e-01	ks_quality_p_value=1	major_base=C	major_cov=33/1	major_frequency=6.800e-01	minor_base=A	minor_cov=0/16	new_cov=0/16	polymorphism_frequency=3.200e-01	polymorphism_score=24.9	prediction=polymorphism	ref_cov=33/1	total_cov=33/17
RA	200	.	1	1455208	0	A	C	bias_e_value=0.000465517	bias_p_value=2.19563e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=166.0	fisher_strand_p_value=8.28004e-12	frequency=3.704e-01	ks_quality_p_value=1	major_base=A	major_cov=37/14	major_frequency=6.296e-01	minor_base=C	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=3.704e-01	polymorphism_score=28.2	prediction=polymorphism	ref_cov=37/14	total_cov=37/44
RA	201	.	1	1455229	0	G	A	bias_e_value=1.67515	bias_p_value=7.90094e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=161.3	fisher_strand_p_value=4.40457e-08	frequency=2.593e-01	ks_quality_p_value=1	major_base=G	major_cov=39/21	major_frequency=7.407e-01	minor_base=A	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.593e-01	polymorphism_score=19.0	prediction=polymorphism	ref_cov=39/21	total_cov=39/42
RA	202	.	1	1467147	0	A	C	bias_e_value=0.0123334	bias_p_value=5.81708e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=186.5	fisher_strand_p_value=2.51796e-10	frequency=2.716e-01	ks_quality_p_value=1	major_base=A	major_cov=15/44	major_frequency=7.284e-01	minor_base=C	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.716e-01	polymorphism_score=19.4	prediction=polymorphism	ref_cov=15/44	total_cov=37/44
RA	203	.	1	1467152	0	G	T	bias_e_value=0.0189451	bias_p_value=8.93555e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=226.8	fisher_strand_p_value=4.08317e-10	frequency=2.593e-01	ks_quality_p_value=0.966023	major_base=G	major_cov=15/45	major_frequency=7.407e-01	minor_base=T	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.593e-01	polymorphism_score=15.3	prediction=polymorphism	ref_cov=15/45	total_cov=37/45
RA	204	.	1	1467175	0	T	A	bias_e_value=2.90582e-05	bias_p_value=1.37055e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=223.6	fisher_strand_p_value=4.66267e-13	frequency=2.778e-01	ks_quality_p_value=1	major_base=T	major_cov=13/52	major_frequency=7.222e-01	minor_base=A	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.778e-01	polymorphism_score=18.9	prediction=polymorphism	ref_cov=13/52	total_cov=38/52
RA	205	.	1	1467192	0	T	A	bias_e_value=0.0294742	bias_p_value=1.39016e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=245.3	fisher_strand_p_value=6.26455e-10	frequency=2.386e-01	ks_quality_p_value=1	major_base=T	major_cov=18/49	major_frequency=7.614e-01	minor_base=A	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.386e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=18/49	total_cov=39/49
RA	206	.	1	1468506	0	T	G	bias_e_value=3.35032e-07	bias_p_value=1.58019e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=238.3	fisher_strand_p_value=4.64729e-15	frequency=3.592e-01	ks_quality_p_value=1	major_base=T	major_cov=17/49	major_frequency=6.408e-01	minor_base=G	minor_cov=37/0	new_cov=37/0	polymorphism_frequency=3.592e-01	polymorphism_score=15.6	prediction=polymorphism	ref_cov=17/49	total_cov=54/49
RA	207	.	1	1488026	0	G	A	bias_e_value=0.0529137	bias_p_value=2.4957e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=246.7	fisher_strand_p_value=1.1625e-09	frequency=2.059e-01	ks_quality_p_value=0.994929	major_base=G	major_cov=24/57	major_frequency=7.941e-01	minor_base=A	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.059e-01	polymorphism_score=13.1	prediction=polymorphism	ref_cov=24/57	total_cov=46/57
RA	208	.	1	1488045	0	G	A	bias_e_value=0.00462305	bias_p_value=2.18048e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=238.9	fisher_strand_p_value=9.0375e-11	frequency=2.330e-01	ks_quality_p_value=1	major_base=G	major_cov=23/56	major_frequency=7.670e-01	minor_base=A	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.330e-01	polymorphism_score=19.6	prediction=polymorphism	ref_cov=23/56	total_cov=49/56
RA	209	.	1	1493250	0	G	T	bias_e_value=2.44436e-06	bias_p_value=1.15289e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=335.5	fisher_strand_p_value=3.60809e-14	frequency=2.136e-01	ks_quality_p_value=1	major_base=G	major_cov=12/69	major_frequency=7.864e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.136e-01	polymorphism_score=15.0	prediction=polymorphism	ref_cov=12/69	total_cov=34/69
RA	210	.	1	1496271	0	A	C	bias_e_value=1.28562e-16	bias_p_value=6.06367e-23	consensus_reject=FREQUENCY_CUTOFF	consensus_score=292.6	fisher_strand_p_value=1.07922e-24	frequency=4.155e-01	ks_quality_p_value=1	major_base=A	major_cov=66/17	major_frequency=5.845e-01	minor_base=C	minor_cov=0/59	new_cov=0/59	polymorphism_frequency=4.155e-01	polymorphism_score=19.9	prediction=polymorphism	ref_cov=66/17	total_cov=66/76
RA	211	.	1	1498648	0	A	T	bias_e_value=0.24711	bias_p_value=1.16551e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=251.3	fisher_strand_p_value=5.83962e-09	frequency=2.136e-01	ks_quality_p_value=1	major_base=A	major_cov=28/53	major_frequency=7.864e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.136e-01	polymorphism_score=15.5	prediction=polymorphism	ref_cov=28/53	total_cov=50/53
RA	212	.	1	1498652	0	G	A	bias_e_value=7.4905e-06	bias_p_value=3.53293e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=218.1	fisher_strand_p_value=1.14719e-13	frequency=2.857e-01	ks_quality_p_value=1	major_base=G	major_cov=19/56	major_frequency=7.143e-01	minor_base=A	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=2.857e-01	polymorphism_score=27.9	prediction=polymorphism	ref_cov=19/56	total_cov=51/56
RA	213	.	1	1498656	0	C	A	bias_e_value=0.000156698	bias_p_value=7.39074e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=277.7	fisher_strand_p_value=2.67318e-12	frequency=2.642e-01	ks_quality_p_value=1	major_base=C	major_cov=22/56	major_frequency=7.358e-01	minor_base=A	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=2.642e-01	polymorphism_score=16.0	prediction=polymorphism	ref_cov=22/56	total_cov=50/56
RA	214	.	1	1498668	0	G	C	bias_e_value=0.00232083	bias_p_value=1.09463e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=306.4	fisher_strand_p_value=7.43325e-11	frequency=2.328e-01	ks_quality_p_value=0.592708	major_base=G	major_cov=30/59	major_frequency=7.672e-01	minor_base=C	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=2.328e-01	polymorphism_score=18.6	prediction=polymorphism	ref_cov=30/59	total_cov=59/59
RA	215	.	1	1498724	0	G	T	bias_e_value=2.53374	bias_p_value=1.19505e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=409.9	fisher_strand_p_value=6.82905e-08	frequency=2.015e-01	ks_quality_p_value=1	major_base=G	major_cov=51/56	major_frequency=7.985e-01	minor_base=T	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=2.015e-01	polymorphism_score=16.3	prediction=polymorphism	ref_cov=51/56	total_cov=78/56
RA	216	.	1	1498742	0	G	T	bias_e_value=0.0377758	bias_p_value=1.78171e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=450.4	fisher_strand_p_value=8.12417e-10	frequency=2.270e-01	ks_quality_p_value=1	major_base=G	major_cov=48/61	major_frequency=7.730e-01	minor_base=T	minor_cov=32/0	new_cov=32/0	polymorphism_frequency=2.270e-01	polymorphism_score=22.7	prediction=polymorphism	ref_cov=48/61	total_cov=80/61
RA	217	.	1	1499866	0	G	T	bias_e_value=0.00953225	bias_p_value=4.49593e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=278.7	fisher_strand_p_value=1.92683e-10	frequency=2.252e-01	ks_quality_p_value=0.998359	major_base=G	major_cov=28/58	major_frequency=7.748e-01	minor_base=T	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.252e-01	polymorphism_score=19.1	prediction=polymorphism	ref_cov=28/58	total_cov=54/58
RA	218	.	1	1499902	0	G	C	bias_e_value=2.36649e-05	bias_p_value=1.11617e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=316.1	fisher_strand_p_value=3.77e-13	frequency=2.720e-01	ks_quality_p_value=1	major_base=G	major_cov=30/61	major_frequency=7.280e-01	minor_base=C	minor_cov=34/0	new_cov=34/0	polymorphism_frequency=2.720e-01	polymorphism_score=43.9	prediction=polymorphism	ref_cov=30/61	total_cov=64/61
RA	219	.	1	1503150	0	T	G	bias_e_value=359.968	bias_p_value=0.000169781	consensus_reject=FREQUENCY_CUTOFF	consensus_score=173.3	fisher_strand_p_value=1.39383e-05	frequency=3.619e-01	ks_quality_p_value=1	major_base=T	major_cov=25/42	major_frequency=6.381e-01	minor_base=G	minor_cov=31/7	new_cov=31/7	polymorphism_frequency=3.619e-01	polymorphism_score=25.3	prediction=polymorphism	ref_cov=25/42	total_cov=56/49
RA	220	.	1	1516424	0	A	C	bias_e_value=8.2075e-06	bias_p_value=3.87111e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=369.7	fisher_strand_p_value=1.26087e-13	frequency=2.222e-01	ks_quality_p_value=1	major_base=A	major_cov=75/30	major_frequency=7.778e-01	minor_base=C	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=2.222e-01	polymorphism_score=16.5	prediction=polymorphism	ref_cov=75/30	total_cov=75/60
RA	221	.	1	1528427	0	G	A	bias_e_value=2.50905e-16	bias_p_value=1.1834e-22	consensus_reject=FREQUENCY_CUTOFF	consensus_score=298.2	fisher_strand_p_value=2.13207e-24	frequency=2.707e-01	ks_quality_p_value=1	major_base=G	major_cov=88/9	major_frequency=7.293e-01	minor_base=A	minor_cov=0/36	new_cov=0/36	polymorphism_frequency=2.707e-01	polymorphism_score=32.6	prediction=polymorphism	ref_cov=88/9	total_cov=88/45
RA	222	.	1	1528431	0	T	A	bias_e_value=1.34641e-10	bias_p_value=6.35042e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=385.6	fisher_strand_p_value=1.51078e-18	frequency=2.117e-01	ks_quality_p_value=1	major_base=T	major_cov=92/16	major_frequency=7.883e-01	minor_base=A	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=2.117e-01	polymorphism_score=26.6	prediction=polymorphism	ref_cov=92/16	total_cov=92/45
RA	223	.	1	1539040	0	A	T	bias_e_value=2.10113e-07	bias_p_value=9.91007e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=271.1	fisher_strand_p_value=2.87389e-15	frequency=2.574e-01	ks_quality_p_value=1	major_base=A	major_cov=63/12	major_frequency=7.426e-01	minor_base=T	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=2.574e-01	polymorphism_score=16.3	prediction=polymorphism	ref_cov=63/12	total_cov=63/38
RA	224	.	1	1539049	0	C	T	bias_e_value=3.21979e-06	bias_p_value=1.51863e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=237.2	fisher_strand_p_value=4.79538e-14	frequency=2.500e-01	ks_quality_p_value=1	major_base=C	major_cov=60/12	major_frequency=7.500e-01	minor_base=T	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.500e-01	polymorphism_score=20.2	prediction=polymorphism	ref_cov=60/12	total_cov=61/37
RA	225	.	1	1539051	0	A	T	bias_e_value=1.1105e-06	bias_p_value=5.2377e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=261.3	fisher_strand_p_value=1.59846e-14	frequency=2.500e-01	ks_quality_p_value=1	major_base=A	major_cov=61/11	major_frequency=7.500e-01	minor_base=T	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.500e-01	polymorphism_score=15.6	prediction=polymorphism	ref_cov=61/11	total_cov=61/37
RA	226	.	1	1539057	0	C	A	bias_e_value=1.34748e-05	bias_p_value=6.35544e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=293.9	fisher_strand_p_value=2.1052e-13	frequency=2.449e-01	ks_quality_p_value=1	major_base=C	major_cov=60/14	major_frequency=7.551e-01	minor_base=A	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.449e-01	polymorphism_score=14.1	prediction=polymorphism	ref_cov=60/14	total_cov=60/38
RA	227	.	1	1540608	0	G	C	bias_e_value=0.000456284	bias_p_value=2.15209e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=202.5	fisher_strand_p_value=8.10946e-12	frequency=2.692e-01	ks_quality_p_value=1	major_base=G	major_cov=10/47	major_frequency=7.308e-01	minor_base=C	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.692e-01	polymorphism_score=19.4	prediction=polymorphism	ref_cov=10/47	total_cov=31/47
RA	228	.	1	1541304	0	A	C	bias_e_value=0.000332801	bias_p_value=1.56967e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=207.1	fisher_strand_p_value=5.84263e-12	frequency=3.429e-01	ks_quality_p_value=1	major_base=A	major_cov=44/25	major_frequency=6.571e-01	minor_base=C	minor_cov=0/36	new_cov=0/36	polymorphism_frequency=3.429e-01	polymorphism_score=23.9	prediction=polymorphism	ref_cov=44/25	total_cov=44/61
RA	229	.	1	1546915	0	G	A	bias_e_value=0.0306302	bias_p_value=1.44469e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=248.5	fisher_strand_p_value=6.52209e-10	frequency=2.121e-01	ks_quality_p_value=1	major_base=G	major_cov=22/56	major_frequency=7.879e-01	minor_base=A	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.121e-01	polymorphism_score=13.8	prediction=polymorphism	ref_cov=22/56	total_cov=43/56
RA	230	.	1	1546930	0	G	C	bias_e_value=0.126362	bias_p_value=5.95994e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=303.0	fisher_strand_p_value=2.88421e-09	frequency=2.075e-01	ks_quality_p_value=1	major_base=G	major_cov=28/56	major_frequency=7.925e-01	minor_base=C	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.075e-01	polymorphism_score=22.0	prediction=polymorphism	ref_cov=28/56	total_cov=50/56
RA	231	.	1	1573014	0	C	T	bias_e_value=5.53242	bias_p_value=2.60939e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=255.3	fisher_strand_p_value=1.56532e-07	frequency=2.143e-01	ks_quality_p_value=1	major_base=C	major_cov=46/31	major_frequency=7.857e-01	minor_base=T	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.143e-01	polymorphism_score=14.2	prediction=polymorphism	ref_cov=46/31	total_cov=46/52
RA	232	.	1	1573058	0	A	C	bias_e_value=9.55739e-14	bias_p_value=4.50779e-20	consensus_reject=FREQUENCY_CUTOFF	consensus_score=179.5	fisher_strand_p_value=9.11645e-22	frequency=3.837e-01	ks_quality_p_value=1	major_base=A	major_cov=51/2	major_frequency=6.163e-01	minor_base=C	minor_cov=0/33	new_cov=0/33	polymorphism_frequency=3.837e-01	polymorphism_score=30.8	prediction=polymorphism	ref_cov=51/2	total_cov=51/35
RA	233	.	1	1573063	0	C	T	bias_e_value=1.05089e-08	bias_p_value=4.95657e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=154.0	fisher_strand_p_value=1.3195e-16	frequency=3.373e-01	ks_quality_p_value=1	major_base=C	major_cov=49/6	major_frequency=6.627e-01	minor_base=T	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=3.373e-01	polymorphism_score=25.2	prediction=polymorphism	ref_cov=49/6	total_cov=49/35
RA	234	.	1	1573069	0	G	A	bias_e_value=1.07112e-13	bias_p_value=5.05199e-20	consensus_reject=FREQUENCY_CUTOFF	consensus_score=136.3	fisher_strand_p_value=1.02411e-21	frequency=4.000e-01	ks_quality_p_value=1	major_base=G	major_cov=49/2	major_frequency=6.000e-01	minor_base=A	minor_cov=0/34	new_cov=0/34	polymorphism_frequency=4.000e-01	polymorphism_score=40.6	prediction=polymorphism	ref_cov=49/2	total_cov=49/36
RA	235	.	1	1590068	0	C	A	bias_e_value=0.0435641	bias_p_value=2.05472e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=311.0	fisher_strand_p_value=9.43329e-10	frequency=2.202e-01	ks_quality_p_value=1	major_base=C	major_cov=56/29	major_frequency=7.798e-01	minor_base=A	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.202e-01	polymorphism_score=12.8	prediction=polymorphism	ref_cov=56/29	total_cov=56/53
RA	236	.	1	1599717	0	C	A	bias_e_value=3.23597e-05	bias_p_value=1.52626e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=204.7	fisher_strand_p_value=5.21217e-13	frequency=3.256e-01	ks_quality_p_value=1	major_base=C	major_cov=45/13	major_frequency=6.744e-01	minor_base=A	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=3.256e-01	polymorphism_score=20.5	prediction=polymorphism	ref_cov=45/13	total_cov=45/43
RA	237	.	1	1599722	0	C	T	bias_e_value=0.170332	bias_p_value=8.03381e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=195.5	fisher_strand_p_value=3.9478e-09	frequency=2.444e-01	ks_quality_p_value=1	major_base=C	major_cov=46/22	major_frequency=7.556e-01	minor_base=T	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.444e-01	polymorphism_score=20.0	prediction=polymorphism	ref_cov=46/22	total_cov=46/44
RA	238	.	1	1599733	0	T	C	bias_e_value=1.35069e-07	bias_p_value=6.3706e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=151.1	fisher_strand_p_value=1.8234e-15	frequency=3.793e-01	ks_quality_p_value=1	major_base=T	major_cov=44/10	major_frequency=6.207e-01	minor_base=C	minor_cov=0/33	new_cov=0/33	polymorphism_frequency=3.793e-01	polymorphism_score=27.3	prediction=polymorphism	ref_cov=44/10	total_cov=44/44
RA	239	.	1	1612545	0	T	C	bias_e_value=46.8566	bias_p_value=2.21001e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=224.0	fisher_strand_p_value=1.5362e-06	frequency=2.165e-01	ks_quality_p_value=1	major_base=T	major_cov=42/34	major_frequency=7.835e-01	minor_base=C	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.165e-01	polymorphism_score=10.1	prediction=polymorphism	ref_cov=42/34	total_cov=42/55
RA	240	.	1	1625339	0	A	C	bias_e_value=2.79002e-09	bias_p_value=1.31592e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=321.5	fisher_strand_p_value=3.38059e-17	frequency=2.845e-01	ks_quality_p_value=1	major_base=A	major_cov=67/16	major_frequency=7.155e-01	minor_base=C	minor_cov=0/33	new_cov=0/33	polymorphism_frequency=2.845e-01	polymorphism_score=16.4	prediction=polymorphism	ref_cov=67/16	total_cov=67/49
RA	241	.	1	1625398	0	C	T	bias_e_value=3.64046e-12	bias_p_value=1.71704e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=247.8	fisher_strand_p_value=3.7811e-20	frequency=3.101e-01	ks_quality_p_value=0.993056	major_base=C	major_cov=72/17	major_frequency=6.899e-01	minor_base=T	minor_cov=0/40	new_cov=0/40	polymorphism_frequency=3.101e-01	polymorphism_score=38.6	prediction=polymorphism	ref_cov=72/17	total_cov=72/58
RA	242	.	1	1644158	0	G	T	bias_e_value=0.0246948	bias_p_value=1.16474e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=237.7	fisher_strand_p_value=5.20527e-10	frequency=2.353e-01	ks_quality_p_value=1	major_base=G	major_cov=49/16	major_frequency=7.647e-01	minor_base=T	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.353e-01	polymorphism_score=14.1	prediction=polymorphism	ref_cov=49/16	total_cov=49/37
RA	243	.	1	1671669	0	G	T	bias_e_value=5.9015e-08	bias_p_value=2.78347e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=252.6	fisher_strand_p_value=7.84336e-16	frequency=3.516e-01	ks_quality_p_value=0.991564	major_base=G	major_cov=27/56	major_frequency=6.484e-01	minor_base=T	minor_cov=45/0	new_cov=45/0	polymorphism_frequency=3.516e-01	polymorphism_score=42.3	prediction=polymorphism	ref_cov=27/56	total_cov=72/56
RA	244	.	1	1671682	0	C	T	bias_e_value=1.36258e-08	bias_p_value=6.42666e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=237.6	fisher_strand_p_value=1.72309e-16	frequency=3.404e-01	ks_quality_p_value=1	major_base=C	major_cov=32/61	major_frequency=6.596e-01	minor_base=T	minor_cov=48/0	new_cov=48/0	polymorphism_frequency=3.404e-01	polymorphism_score=48.2	prediction=polymorphism	ref_cov=32/61	total_cov=80/61
RA	245	.	1	1671741	0	A	T	bias_e_value=0.237708	bias_p_value=1.12116e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=368.3	fisher_strand_p_value=5.60596e-09	frequency=2.015e-01	ks_quality_p_value=1	major_base=A	major_cov=46/61	major_frequency=7.985e-01	minor_base=T	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=2.015e-01	polymorphism_score=17.9	prediction=polymorphism	ref_cov=46/61	total_cov=73/61
RA	246	.	1	1671760	0	A	T	bias_e_value=1.40221	bias_p_value=6.61357e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=404.4	fisher_strand_p_value=3.6486e-08	frequency=2.138e-01	ks_quality_p_value=1	major_base=A	major_cov=46/68	major_frequency=7.862e-01	minor_base=T	minor_cov=29/2	new_cov=29/2	polymorphism_frequency=2.138e-01	polymorphism_score=25.3	prediction=polymorphism	ref_cov=46/68	total_cov=75/70
RA	247	.	1	1688371	0	T	A	bias_e_value=0.009228	bias_p_value=4.35243e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=329.7	fisher_strand_p_value=1.85958e-10	frequency=2.362e-01	ks_quality_p_value=1	major_base=T	major_cov=59/38	major_frequency=7.638e-01	minor_base=A	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=2.362e-01	polymorphism_score=23.8	prediction=polymorphism	ref_cov=59/38	total_cov=59/68
RA	248	.	1	1688397	0	C	T	bias_e_value=0.244696	bias_p_value=1.15412e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=265.5	fisher_strand_p_value=6.22882e-09	frequency=2.105e-01	ks_quality_p_value=0.927879	major_base=C	major_cov=56/34	major_frequency=7.895e-01	minor_base=T	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.105e-01	polymorphism_score=15.4	prediction=polymorphism	ref_cov=56/34	total_cov=56/61
RA	249	.	1	1688400	0	T	A	bias_e_value=0.00989058	bias_p_value=4.66494e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=289.0	fisher_strand_p_value=1.99928e-10	frequency=2.373e-01	ks_quality_p_value=1	major_base=T	major_cov=57/33	major_frequency=7.627e-01	minor_base=A	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.373e-01	polymorphism_score=20.1	prediction=polymorphism	ref_cov=57/33	total_cov=57/61
RA	250	.	1	1688406	0	G	A	bias_e_value=0.328357	bias_p_value=1.54871e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=284.5	fisher_strand_p_value=7.87779e-09	frequency=2.051e-01	ks_quality_p_value=1	major_base=G	major_cov=57/36	major_frequency=7.949e-01	minor_base=A	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.051e-01	polymorphism_score=11.6	prediction=polymorphism	ref_cov=57/36	total_cov=57/60
RA	251	.	1	1688417	0	C	T	bias_e_value=0.000129133	bias_p_value=6.09064e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=198.9	fisher_strand_p_value=2.18706e-12	frequency=2.857e-01	ks_quality_p_value=1	major_base=C	major_cov=54/26	major_frequency=7.143e-01	minor_base=T	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=2.857e-01	polymorphism_score=35.5	prediction=polymorphism	ref_cov=54/26	total_cov=54/59
RA	252	.	1	1688448	0	G	A	bias_e_value=0.0270738	bias_p_value=1.27695e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=184.2	fisher_strand_p_value=5.7314e-10	frequency=2.843e-01	ks_quality_p_value=1	major_base=G	major_cov=46/27	major_frequency=7.157e-01	minor_base=A	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=2.843e-01	polymorphism_score=20.0	prediction=polymorphism	ref_cov=46/27	total_cov=46/56
RA	253	.	1	1688451	0	T	A	bias_e_value=1.36414	bias_p_value=6.43404e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=249.5	fisher_strand_p_value=3.56048e-08	frequency=2.105e-01	ks_quality_p_value=0.995333	major_base=T	major_cov=53/37	major_frequency=7.895e-01	minor_base=A	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.105e-01	polymorphism_score=14.8	prediction=polymorphism	ref_cov=53/37	total_cov=53/61
RA	254	.	1	1688454	0	A	C	bias_e_value=5.5332e-16	bias_p_value=2.60976e-22	consensus_reject=FREQUENCY_CUTOFF	consensus_score=177.1	fisher_strand_p_value=4.77109e-24	frequency=4.602e-01	ks_quality_p_value=1	major_base=A	major_cov=53/8	major_frequency=5.398e-01	minor_base=C	minor_cov=0/52	new_cov=0/52	polymorphism_frequency=4.602e-01	polymorphism_score=43.9	prediction=polymorphism	ref_cov=53/8	total_cov=53/60
RA	255	.	1	1701517	0	C	A	bias_e_value=0.0123937	bias_p_value=5.84553e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=328.8	fisher_strand_p_value=2.53083e-10	frequency=2.110e-01	ks_quality_p_value=1	major_base=C	major_cov=60/26	major_frequency=7.890e-01	minor_base=A	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.110e-01	polymorphism_score=21.8	prediction=polymorphism	ref_cov=60/26	total_cov=60/49
RA	256	.	1	1701551	0	A	T	bias_e_value=1.06044e-05	bias_p_value=5.0016e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=210.6	fisher_strand_p_value=1.64327e-13	frequency=3.333e-01	ks_quality_p_value=1	major_base=A	major_cov=49/21	major_frequency=6.667e-01	minor_base=T	minor_cov=0/35	new_cov=0/35	polymorphism_frequency=3.333e-01	polymorphism_score=22.7	prediction=polymorphism	ref_cov=49/21	total_cov=49/56
RA	257	.	1	1701564	0	T	C	bias_e_value=6.91813e-07	bias_p_value=3.26297e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=195.2	fisher_strand_p_value=9.81192e-15	frequency=3.491e-01	ks_quality_p_value=1	major_base=T	major_cov=50/19	major_frequency=6.509e-01	minor_base=C	minor_cov=0/37	new_cov=0/37	polymorphism_frequency=3.491e-01	polymorphism_score=26.4	prediction=polymorphism	ref_cov=50/19	total_cov=50/57
RA	258	.	1	1702208	0	G	A	bias_e_value=0.0225374	bias_p_value=1.06299e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=245.7	fisher_strand_p_value=4.73031e-10	frequency=2.245e-01	ks_quality_p_value=1	major_base=G	major_cov=54/22	major_frequency=7.755e-01	minor_base=A	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.245e-01	polymorphism_score=11.3	prediction=polymorphism	ref_cov=54/22	total_cov=54/45
RA	259	.	1	1702254	0	C	T	bias_e_value=1.10449e-06	bias_p_value=5.20937e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=219.3	fisher_strand_p_value=1.58954e-14	frequency=2.745e-01	ks_quality_p_value=1	major_base=C	major_cov=59/15	major_frequency=7.255e-01	minor_base=T	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.745e-01	polymorphism_score=26.7	prediction=polymorphism	ref_cov=59/15	total_cov=59/43
RA	260	.	1	1713863	0	A	T	bias_e_value=0.00285035	bias_p_value=1.34438e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=267.9	fisher_strand_p_value=5.458e-11	frequency=2.115e-01	ks_quality_p_value=1	major_base=A	major_cov=21/61	major_frequency=7.885e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.115e-01	polymorphism_score=18.3	prediction=polymorphism	ref_cov=21/61	total_cov=44/61
RA	261	.	1	1713868	0	G	T	bias_e_value=6.90111e-06	bias_p_value=3.25494e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=303.7	fisher_strand_p_value=1.06051e-13	frequency=2.453e-01	ks_quality_p_value=0.993887	major_base=G	major_cov=17/63	major_frequency=7.547e-01	minor_base=T	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.453e-01	polymorphism_score=20.4	prediction=polymorphism	ref_cov=17/63	total_cov=43/63
RA	262	.	1	1713872	0	T	G	bias_e_value=3.15742e-13	bias_p_value=1.48921e-19	consensus_reject=FREQUENCY_CUTOFF	consensus_score=260.6	fisher_strand_p_value=3.08793e-21	frequency=3.333e-01	ks_quality_p_value=1	major_base=T	major_cov=7/63	major_frequency=6.667e-01	minor_base=G	minor_cov=35/0	new_cov=35/0	polymorphism_frequency=3.333e-01	polymorphism_score=15.5	prediction=polymorphism	ref_cov=7/63	total_cov=44/63
RA	263	.	1	1713887	0	T	G	bias_e_value=6.10972e-11	bias_p_value=2.88168e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=267.8	fisher_strand_p_value=6.72612e-19	frequency=2.900e-01	ks_quality_p_value=1	major_base=T	major_cov=7/64	major_frequency=7.100e-01	minor_base=G	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=2.900e-01	polymorphism_score=13.8	prediction=polymorphism	ref_cov=7/64	total_cov=45/64
RA	264	.	1	1713912	0	T	A	bias_e_value=8.6397e-05	bias_p_value=4.07496e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=263.1	fisher_strand_p_value=1.44169e-12	frequency=2.524e-01	ks_quality_p_value=1	major_base=T	major_cov=19/58	major_frequency=7.476e-01	minor_base=A	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.524e-01	polymorphism_score=17.4	prediction=polymorphism	ref_cov=19/58	total_cov=45/58
RA	265	.	1	1713917	0	C	T	bias_e_value=0.0132259	bias_p_value=6.23806e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=244.4	fisher_strand_p_value=2.70874e-10	frequency=2.136e-01	ks_quality_p_value=1	major_base=C	major_cov=23/58	major_frequency=7.864e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.136e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=23/58	total_cov=45/58
RA	266	.	1	1713923	0	G	C	bias_e_value=0.000264608	bias_p_value=1.24804e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=286.9	fisher_strand_p_value=7.53179e-12	frequency=2.243e-01	ks_quality_p_value=0.611359	major_base=G	major_cov=21/62	major_frequency=7.757e-01	minor_base=C	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.243e-01	polymorphism_score=14.4	prediction=polymorphism	ref_cov=21/62	total_cov=46/62
RA	267	.	1	1723036	0	C	T	bias_e_value=0.0208916	bias_p_value=9.85364e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=232.8	fisher_strand_p_value=4.39819e-10	frequency=2.524e-01	ks_quality_p_value=0.993465	major_base=C	major_cov=51/26	major_frequency=7.476e-01	minor_base=T	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=2.524e-01	polymorphism_score=18.3	prediction=polymorphism	ref_cov=51/26	total_cov=51/56
RA	268	.	1	1723047	0	T	C	bias_e_value=0.000230177	bias_p_value=1.08564e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=218.4	fisher_strand_p_value=3.98419e-12	frequency=2.981e-01	ks_quality_p_value=1	major_base=T	major_cov=50/23	major_frequency=7.019e-01	minor_base=C	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=2.981e-01	polymorphism_score=10.5	prediction=polymorphism	ref_cov=50/23	total_cov=50/54
RA	269	.	1	1723052	0	A	C	bias_e_value=2.50711e-11	bias_p_value=1.18249e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=187.1	fisher_strand_p_value=2.70253e-19	frequency=4.314e-01	ks_quality_p_value=1	major_base=A	major_cov=48/10	major_frequency=5.686e-01	minor_base=C	minor_cov=0/44	new_cov=0/44	polymorphism_frequency=4.314e-01	polymorphism_score=23.2	prediction=polymorphism	ref_cov=48/10	total_cov=48/54
RA	270	.	1	1723066	0	A	C	bias_e_value=3.55992e-20	bias_p_value=1.67906e-26	consensus_reject=FREQUENCY_CUTOFF	consensus_score=147.8	fisher_strand_p_value=2.60254e-28	frequency=4.902e-01	ks_quality_p_value=1	major_base=A	major_cov=51/1	major_frequency=5.098e-01	minor_base=C	minor_cov=0/50	new_cov=0/50	polymorphism_frequency=4.902e-01	polymorphism_score=49.8	prediction=polymorphism	ref_cov=51/1	total_cov=51/51
RA	271	.	1	1727712	0	T	A	bias_e_value=6.23698e-10	bias_p_value=2.9417e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=251.6	fisher_strand_p_value=7.27014e-18	frequency=2.577e-01	ks_quality_p_value=1	major_base=T	major_cov=6/66	major_frequency=7.423e-01	minor_base=A	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.577e-01	polymorphism_score=21.9	prediction=polymorphism	ref_cov=6/66	total_cov=32/66
RA	272	.	1	1727743	0	G	A	bias_e_value=5.57603e-10	bias_p_value=2.62996e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=215.7	fisher_strand_p_value=6.48131e-18	frequency=2.717e-01	ks_quality_p_value=1	major_base=G	major_cov=5/62	major_frequency=7.283e-01	minor_base=A	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.717e-01	polymorphism_score=20.9	prediction=polymorphism	ref_cov=5/62	total_cov=31/62
RA	273	.	1	1758091	0	A	C	bias_e_value=1.14681e-07	bias_p_value=5.40898e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=347.7	fisher_strand_p_value=1.54073e-15	frequency=2.119e-01	ks_quality_p_value=1	major_base=A	major_cov=15/78	major_frequency=7.881e-01	minor_base=C	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.119e-01	polymorphism_score=10.1	prediction=polymorphism	ref_cov=15/78	total_cov=40/78
RA	274	.	1	1758476	0	A	C	bias_e_value=9.81295e-13	bias_p_value=4.62833e-19	consensus_reject=FREQUENCY_CUTOFF	consensus_score=389.3	fisher_strand_p_value=9.83317e-21	frequency=2.519e-01	ks_quality_p_value=1	major_base=A	major_cov=85/13	major_frequency=7.481e-01	minor_base=C	minor_cov=0/33	new_cov=0/33	polymorphism_frequency=2.519e-01	polymorphism_score=14.4	prediction=polymorphism	ref_cov=85/13	total_cov=85/49
RA	275	.	1	1758742	0	T	A	bias_e_value=0.00124064	bias_p_value=5.85154e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=276.2	fisher_strand_p_value=2.29493e-11	frequency=2.537e-01	ks_quality_p_value=1	major_base=T	major_cov=60/40	major_frequency=7.463e-01	minor_base=A	minor_cov=0/34	new_cov=0/34	polymorphism_frequency=2.537e-01	polymorphism_score=27.8	prediction=polymorphism	ref_cov=60/40	total_cov=60/74
RA	276	.	1	1830946	0	G	T	bias_e_value=2.73353e-11	bias_p_value=1.28928e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=427.5	fisher_strand_p_value=2.95257e-19	frequency=2.148e-01	ks_quality_p_value=1	major_base=G	major_cov=14/92	major_frequency=7.852e-01	minor_base=T	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=2.148e-01	polymorphism_score=15.8	prediction=polymorphism	ref_cov=14/92	total_cov=43/92
RA	277	.	1	1831236	0	G	A	bias_e_value=2.4655e-10	bias_p_value=1.16287e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=340.1	fisher_strand_p_value=2.8079e-18	frequency=2.279e-01	ks_quality_p_value=1	major_base=G	major_cov=87/18	major_frequency=7.721e-01	minor_base=A	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=2.279e-01	polymorphism_score=20.0	prediction=polymorphism	ref_cov=87/18	total_cov=87/50
RA	278	.	1	1836238	0	G	A	bias_e_value=1.50287	bias_p_value=7.08834e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=208.8	fisher_strand_p_value=3.92642e-08	frequency=2.674e-01	ks_quality_p_value=1	major_base=G	major_cov=39/24	major_frequency=7.326e-01	minor_base=A	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.674e-01	polymorphism_score=18.4	prediction=polymorphism	ref_cov=39/24	total_cov=39/47
RA	279	.	1	1836305	0	A	C	bias_e_value=0.0151676	bias_p_value=7.15389e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=157.2	fisher_strand_p_value=3.12586e-10	frequency=3.750e-01	ks_quality_p_value=1	major_base=A	major_cov=32/13	major_frequency=6.250e-01	minor_base=C	minor_cov=0/27	new_cov=0/27	polymorphism_frequency=3.750e-01	polymorphism_score=12.9	prediction=polymorphism	ref_cov=32/13	total_cov=32/41
RA	280	.	1	1837765	0	C	T	bias_e_value=1.27067e-11	bias_p_value=5.99316e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=197.6	fisher_strand_p_value=1.34828e-19	frequency=3.366e-01	ks_quality_p_value=1	major_base=C	major_cov=8/59	major_frequency=6.634e-01	minor_base=T	minor_cov=34/0	new_cov=34/0	polymorphism_frequency=3.366e-01	polymorphism_score=30.9	prediction=polymorphism	ref_cov=8/59	total_cov=42/59
RA	281	.	1	1837770	0	C	T	bias_e_value=2.06874e-08	bias_p_value=9.75732e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=214.6	fisher_strand_p_value=2.64655e-16	frequency=2.970e-01	ks_quality_p_value=1	major_base=C	major_cov=12/59	major_frequency=7.030e-01	minor_base=T	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=2.970e-01	polymorphism_score=24.4	prediction=polymorphism	ref_cov=12/59	total_cov=42/59
RA	282	.	1	1837777	0	C	A	bias_e_value=0.000612343	bias_p_value=2.88814e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=300.6	fisher_strand_p_value=1.10652e-11	frequency=2.130e-01	ks_quality_p_value=0.995002	major_base=C	major_cov=21/64	major_frequency=7.870e-01	minor_base=A	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.130e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=21/64	total_cov=44/64
RA	283	.	1	1837803	0	T	A	bias_e_value=1.59744e-06	bias_p_value=7.53438e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=259.1	fisher_strand_p_value=2.326e-14	frequency=2.692e-01	ks_quality_p_value=1	major_base=T	major_cov=16/60	major_frequency=7.308e-01	minor_base=A	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=2.692e-01	polymorphism_score=18.6	prediction=polymorphism	ref_cov=16/60	total_cov=44/60
RA	284	.	1	1837816	0	G	A	bias_e_value=0.00349705	bias_p_value=1.6494e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=294.8	fisher_strand_p_value=6.75481e-11	frequency=2.018e-01	ks_quality_p_value=1	major_base=G	major_cov=23/64	major_frequency=7.982e-01	minor_base=A	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.018e-01	polymorphism_score=12.8	prediction=polymorphism	ref_cov=23/64	total_cov=45/64
RA	285	.	1	1837851	0	G	A	bias_e_value=3.10802	bias_p_value=1.46591e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=265.6	fisher_strand_p_value=8.48194e-08	frequency=2.043e-01	ks_quality_p_value=1	major_base=G	major_cov=26/48	major_frequency=7.957e-01	minor_base=A	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.043e-01	polymorphism_score=13.6	prediction=polymorphism	ref_cov=26/48	total_cov=45/48
RA	286	.	1	1866656	0	A	C	bias_e_value=3.3508	bias_p_value=1.58042e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=188.7	fisher_strand_p_value=9.18695e-08	frequency=3.364e-01	ks_quality_p_value=1	major_base=A	major_cov=32/39	major_frequency=6.636e-01	minor_base=C	minor_cov=0/36	new_cov=0/36	polymorphism_frequency=3.364e-01	polymorphism_score=12.1	prediction=polymorphism	ref_cov=32/39	total_cov=32/75
RA	287	.	1	1866659	0	A	C	bias_e_value=34.2863	bias_p_value=1.61713e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=201.0	fisher_strand_p_value=1.09848e-06	frequency=3.048e-01	ks_quality_p_value=1	major_base=A	major_cov=32/41	major_frequency=6.952e-01	minor_base=C	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=3.048e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=32/41	total_cov=32/75
RA	288	.	1	1871276	0	C	T	bias_e_value=1.30821	bias_p_value=6.17025e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=124.6	fisher_strand_p_value=3.39029e-08	frequency=2.985e-01	ks_quality_p_value=1	major_base=C	major_cov=33/14	major_frequency=7.015e-01	minor_base=T	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.985e-01	polymorphism_score=18.4	prediction=polymorphism	ref_cov=33/14	total_cov=33/35
RA	289	.	1	1898294	0	A	C	bias_e_value=3.06852e-08	bias_p_value=1.44728e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=319.6	fisher_strand_p_value=3.9692e-16	frequency=2.429e-01	ks_quality_p_value=1	major_base=A	major_cov=27/79	major_frequency=7.571e-01	minor_base=C	minor_cov=34/0	new_cov=34/0	polymorphism_frequency=2.429e-01	polymorphism_score=18.7	prediction=polymorphism	ref_cov=27/79	total_cov=61/80
RA	290	.	1	1900648	0	T	G	bias_e_value=0.00168365	bias_p_value=7.94103e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=440.6	fisher_strand_p_value=3.15372e-11	frequency=2.027e-01	ks_quality_p_value=1	major_base=T	major_cov=38/80	major_frequency=7.973e-01	minor_base=G	minor_cov=29/1	new_cov=29/1	polymorphism_frequency=2.027e-01	polymorphism_score=11.5	prediction=polymorphism	ref_cov=38/80	total_cov=67/81
RA	291	.	1	1925171	0	A	G	bias_e_value=159.219	bias_p_value=7.50963e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=124.0	fisher_strand_p_value=5.7471e-06	frequency=2.976e-01	ks_quality_p_value=1	major_base=A	major_cov=31/28	major_frequency=7.024e-01	minor_base=G	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.976e-01	polymorphism_score=25.3	prediction=polymorphism	ref_cov=31/28	total_cov=57/28
RA	292	.	1	1925174	0	T	G	bias_e_value=151.03	bias_p_value=7.1234e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=153.0	fisher_strand_p_value=5.42777e-06	frequency=3.049e-01	ks_quality_p_value=1	major_base=T	major_cov=30/27	major_frequency=6.951e-01	minor_base=G	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=3.049e-01	polymorphism_score=10.6	prediction=polymorphism	ref_cov=30/27	total_cov=57/27
RA	293	.	1	1925181	0	C	T	bias_e_value=0.434376	bias_p_value=2.04876e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=92.4	fisher_strand_p_value=1.05801e-08	frequency=4.118e-01	ks_quality_p_value=1	major_base=C	major_cov=23/27	major_frequency=5.882e-01	minor_base=T	minor_cov=35/0	new_cov=35/0	polymorphism_frequency=4.118e-01	polymorphism_score=34.1	prediction=polymorphism	ref_cov=23/27	total_cov=58/27
RA	294	.	1	1925203	0	T	G	bias_e_value=52.1741	bias_p_value=2.46082e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=174.3	fisher_strand_p_value=1.72439e-06	frequency=3.187e-01	ks_quality_p_value=1	major_base=T	major_cov=34/28	major_frequency=6.813e-01	minor_base=G	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=3.187e-01	polymorphism_score=15.7	prediction=polymorphism	ref_cov=34/28	total_cov=63/28
RA	295	.	1	1925214	0	C	G	bias_e_value=1283.26	bias_p_value=0.000605256	consensus_reject=FREQUENCY_CUTOFF	consensus_score=204.9	fisher_strand_p_value=5.61029e-05	frequency=2.500e-01	ks_quality_p_value=1	major_base=C	major_cov=43/29	major_frequency=7.500e-01	minor_base=G	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.500e-01	polymorphism_score=11.9	prediction=polymorphism	ref_cov=43/29	total_cov=67/29
RA	296	.	1	1929350	0	T	A	bias_e_value=0.000619777	bias_p_value=2.92321e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=191.8	fisher_strand_p_value=1.11489e-11	frequency=2.154e-01	ks_quality_p_value=1	major_base=T	major_cov=48/3	major_frequency=7.846e-01	minor_base=A	minor_cov=0/14	new_cov=0/14	polymorphism_frequency=2.154e-01	polymorphism_score=13.4	prediction=polymorphism	ref_cov=48/3	total_cov=48/17
RA	297	.	1	1929354	0	G	C	bias_e_value=0.00420396	bias_p_value=1.98282e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=180.4	fisher_strand_p_value=8.1846e-11	frequency=2.222e-01	ks_quality_p_value=1	major_base=G	major_cov=45/4	major_frequency=7.778e-01	minor_base=C	minor_cov=0/14	new_cov=0/14	polymorphism_frequency=2.222e-01	polymorphism_score=16.5	prediction=polymorphism	ref_cov=45/4	total_cov=45/18
RA	298	.	1	1948712	0	G	A	bias_e_value=3.61565e-05	bias_p_value=1.70534e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=203.3	fisher_strand_p_value=5.84667e-13	frequency=2.991e-01	ks_quality_p_value=1	major_base=G	major_cov=53/22	major_frequency=7.009e-01	minor_base=A	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=2.991e-01	polymorphism_score=21.7	prediction=polymorphism	ref_cov=53/22	total_cov=53/54
RA	299	.	1	1952867	0	T	A	bias_e_value=7.58346e-07	bias_p_value=3.57678e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=258.1	fisher_strand_p_value=1.07863e-14	frequency=2.396e-01	ks_quality_p_value=1	major_base=T	major_cov=10/63	major_frequency=7.604e-01	minor_base=A	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.396e-01	polymorphism_score=15.1	prediction=polymorphism	ref_cov=10/63	total_cov=33/63
RA	300	.	1	1953627	0	T	G	bias_e_value=2.251e-14	bias_p_value=1.0617e-20	consensus_reject=FREQUENCY_CUTOFF	consensus_score=245.2	fisher_strand_p_value=2.08494e-22	frequency=4.074e-01	ks_quality_p_value=1	major_base=T	major_cov=18/62	major_frequency=5.926e-01	minor_base=G	minor_cov=55/0	new_cov=55/0	polymorphism_frequency=4.074e-01	polymorphism_score=52.8	prediction=polymorphism	ref_cov=18/62	total_cov=74/62
RA	301	.	1	1953636	0	A	G	bias_e_value=5.95771e-05	bias_p_value=2.80998e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=293.8	fisher_strand_p_value=9.80781e-13	frequency=2.681e-01	ks_quality_p_value=1	major_base=A	major_cov=38/63	major_frequency=7.319e-01	minor_base=G	minor_cov=37/0	new_cov=37/0	polymorphism_frequency=2.681e-01	polymorphism_score=19.8	prediction=polymorphism	ref_cov=38/63	total_cov=75/63
RA	302	.	1	1953642	0	T	G	bias_e_value=9.33529e-11	bias_p_value=4.40304e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=329.2	fisher_strand_p_value=1.03823e-18	frequency=3.586e-01	ks_quality_p_value=1	major_base=T	major_cov=29/64	major_frequency=6.414e-01	minor_base=G	minor_cov=52/0	new_cov=52/0	polymorphism_frequency=3.586e-01	polymorphism_score=17.0	prediction=polymorphism	ref_cov=29/64	total_cov=81/64
RA	303	.	1	1953664	0	A	T	bias_e_value=0.00665024	bias_p_value=3.13662e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=392.6	fisher_strand_p_value=1.32082e-10	frequency=2.067e-01	ks_quality_p_value=1	major_base=A	major_cov=48/71	major_frequency=7.933e-01	minor_base=T	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=2.067e-01	polymorphism_score=23.2	prediction=polymorphism	ref_cov=48/71	total_cov=81/72
RA	304	.	1	2038371	0	C	A	bias_e_value=2.41441e-05	bias_p_value=1.13877e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=339.7	fisher_strand_p_value=3.84904e-13	frequency=2.110e-01	ks_quality_p_value=1	major_base=C	major_cov=17/69	major_frequency=7.890e-01	minor_base=A	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.110e-01	polymorphism_score=11.9	prediction=polymorphism	ref_cov=17/69	total_cov=40/69
RA	305	.	1	2043309	0	C	T	bias_e_value=2.83486e-05	bias_p_value=1.33707e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=261.3	fisher_strand_p_value=4.54484e-13	frequency=2.100e-01	ks_quality_p_value=1	major_base=C	major_cov=13/66	major_frequency=7.900e-01	minor_base=T	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.100e-01	polymorphism_score=12.8	prediction=polymorphism	ref_cov=13/66	total_cov=35/66
RA	306	.	1	2043313	0	A	T	bias_e_value=2.53102e-08	bias_p_value=1.19377e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=289.9	fisher_strand_p_value=3.25625e-16	frequency=2.427e-01	ks_quality_p_value=1	major_base=A	major_cov=10/68	major_frequency=7.573e-01	minor_base=T	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.427e-01	polymorphism_score=19.4	prediction=polymorphism	ref_cov=10/68	total_cov=36/68
RA	307	.	1	2043322	0	C	G	bias_e_value=0.000620632	bias_p_value=2.92724e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=293.7	fisher_strand_p_value=1.11649e-11	frequency=2.079e-01	ks_quality_p_value=1	major_base=C	major_cov=17/63	major_frequency=7.921e-01	minor_base=G	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.079e-01	polymorphism_score=10.1	prediction=polymorphism	ref_cov=17/63	total_cov=38/63
RA	308	.	1	2043349	0	A	T	bias_e_value=0.000882388	bias_p_value=4.16182e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=302.3	fisher_strand_p_value=1.60985e-11	frequency=2.136e-01	ks_quality_p_value=1	major_base=A	major_cov=19/62	major_frequency=7.864e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.136e-01	polymorphism_score=16.2	prediction=polymorphism	ref_cov=19/62	total_cov=41/62
RA	309	.	1	2043385	0	C	T	bias_e_value=0.000259182	bias_p_value=1.22244e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=291.9	fisher_strand_p_value=4.50662e-12	frequency=2.000e-01	ks_quality_p_value=1	major_base=C	major_cov=17/67	major_frequency=8.000e-01	minor_base=T	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.000e-01	polymorphism_score=14.3	prediction=polymorphism	ref_cov=17/67	total_cov=38/67
RA	310	.	1	2072647	0	G	T	bias_e_value=1.26543e-10	bias_p_value=5.96844e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=393.7	fisher_strand_p_value=1.41777e-18	frequency=2.857e-01	ks_quality_p_value=1	major_base=G	major_cov=24/76	major_frequency=7.143e-01	minor_base=T	minor_cov=40/0	new_cov=40/0	polymorphism_frequency=2.857e-01	polymorphism_score=30.6	prediction=polymorphism	ref_cov=24/76	total_cov=64/76
RA	311	.	1	2072662	0	T	A	bias_e_value=6.31589e-09	bias_p_value=2.97892e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=334.3	fisher_strand_p_value=7.82134e-17	frequency=2.652e-01	ks_quality_p_value=1	major_base=T	major_cov=23/74	major_frequency=7.348e-01	minor_base=A	minor_cov=35/0	new_cov=35/0	polymorphism_frequency=2.652e-01	polymorphism_score=23.4	prediction=polymorphism	ref_cov=23/74	total_cov=58/74
RA	312	.	1	2085088	0	C	A	bias_e_value=2.65707e-08	bias_p_value=1.25322e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=331.6	fisher_strand_p_value=3.42309e-16	frequency=2.541e-01	ks_quality_p_value=1	major_base=C	major_cov=72/19	major_frequency=7.459e-01	minor_base=A	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=2.541e-01	polymorphism_score=26.4	prediction=polymorphism	ref_cov=72/19	total_cov=72/50
RA	313	.	1	2085104	0	C	A	bias_e_value=9.15199e-10	bias_p_value=4.31658e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=216.2	fisher_strand_p_value=1.08936e-17	frequency=3.627e-01	ks_quality_p_value=0.988901	major_base=C	major_cov=53/12	major_frequency=6.373e-01	minor_base=A	minor_cov=0/37	new_cov=0/37	polymorphism_frequency=3.627e-01	polymorphism_score=38.9	prediction=polymorphism	ref_cov=53/12	total_cov=53/50
RA	314	.	1	2087611	0	G	A	bias_e_value=0.367187	bias_p_value=1.73185e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=294.6	fisher_strand_p_value=8.86247e-09	frequency=2.063e-01	ks_quality_p_value=1	major_base=G	major_cov=42/58	major_frequency=7.937e-01	minor_base=A	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.063e-01	polymorphism_score=16.3	prediction=polymorphism	ref_cov=42/58	total_cov=69/58
RA	315	.	1	2103554	0	T	A	bias_e_value=2.55874e-06	bias_p_value=1.20684e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=250.5	fisher_strand_p_value=3.78252e-14	frequency=2.444e-01	ks_quality_p_value=1	major_base=T	major_cov=59/9	major_frequency=7.556e-01	minor_base=A	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.444e-01	polymorphism_score=17.7	prediction=polymorphism	ref_cov=59/9	total_cov=59/31
RA	316	.	1	2106259	0	G	A	bias_e_value=8.24863e-09	bias_p_value=3.89051e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=308.9	fisher_strand_p_value=1.02888e-16	frequency=2.555e-01	ks_quality_p_value=1	major_base=G	major_cov=77/25	major_frequency=7.445e-01	minor_base=A	minor_cov=0/35	new_cov=0/35	polymorphism_frequency=2.555e-01	polymorphism_score=30.5	prediction=polymorphism	ref_cov=77/25	total_cov=77/60
RA	317	.	1	2106264	0	A	C	bias_e_value=6.17708e-10	bias_p_value=2.91345e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=350.0	fisher_strand_p_value=7.19856e-18	frequency=2.879e-01	ks_quality_p_value=1	major_base=A	major_cov=72/22	major_frequency=7.121e-01	minor_base=C	minor_cov=0/38	new_cov=0/38	polymorphism_frequency=2.879e-01	polymorphism_score=12.1	prediction=polymorphism	ref_cov=72/22	total_cov=72/60
RA	318	.	1	2106269	0	A	T	bias_e_value=0.000260349	bias_p_value=1.22795e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=315.9	fisher_strand_p_value=4.5277e-12	frequency=2.240e-01	ks_quality_p_value=1	major_base=A	major_cov=67/30	major_frequency=7.760e-01	minor_base=T	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.240e-01	polymorphism_score=13.5	prediction=polymorphism	ref_cov=67/30	total_cov=67/59
RA	319	.	1	2106284	0	A	C	bias_e_value=1.99609e-20	bias_p_value=9.41468e-27	consensus_reject=FREQUENCY_CUTOFF	consensus_score=278.8	fisher_strand_p_value=1.44611e-28	frequency=3.876e-01	ks_quality_p_value=1	major_base=A	major_cov=72/7	major_frequency=6.124e-01	minor_base=C	minor_cov=0/50	new_cov=0/50	polymorphism_frequency=3.876e-01	polymorphism_score=24.4	prediction=polymorphism	ref_cov=72/7	total_cov=72/57
RA	320	.	1	2114559	0	C	T	bias_e_value=5.46632e-10	bias_p_value=2.57821e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=267.6	fisher_strand_p_value=6.48998e-18	frequency=2.578e-01	ks_quality_p_value=0.978523	major_base=C	major_cov=18/77	major_frequency=7.422e-01	minor_base=T	minor_cov=33/0	new_cov=33/0	polymorphism_frequency=2.578e-01	polymorphism_score=30.7	prediction=polymorphism	ref_cov=18/77	total_cov=51/77
RA	321	.	1	2114582	0	A	G	bias_e_value=8.24079e-08	bias_p_value=3.88681e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=368.1	fisher_strand_p_value=1.09652e-15	frequency=2.121e-01	ks_quality_p_value=1	major_base=A	major_cov=21/83	major_frequency=7.879e-01	minor_base=G	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=2.121e-01	polymorphism_score=11.2	prediction=polymorphism	ref_cov=21/83	total_cov=50/83
MC	322	.	1	1849209	1852569	0	0	left_inside_cov=41	left_outside_cov=42	right_inside_cov=41	right_outside_cov=42
JC	323	.	1	1	1	1	2120195	-1	0	alignment_overlap=0	circular_chromosome=1	coverage_minus=44	coverage_plus=55	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=222	key=1__1__1__1__2120195__-1__0____251__251__0__0	max_left=243	max_left_minus=217	max_left_plus=243	max_min_left=125	max_min_left_minus=125	max_min_left_plus=122	max_min_right=124	max_min_right_minus=124	max_min_right_plus=120	max_pos_hash_score=444	max_right=250	max_right_minus=250	max_right_plus=249	neg_log10_pos_hash_p_value=0.9	new_junction_coverage=0.80	new_junction_read_count=100	polymorphism_frequency=1.000e+00	pos_hash_score=57	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=222	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=222	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=99
JC	324	.	1	5615	-1	1	5825	-1	0	alignment_overlap=9	coverage_minus=0	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=213	key=1__5615__-1__1__5834__-1__9____251__251__1__1	max_left=68	max_left_minus=0	max_left_plus=68	max_min_left=68	max_min_left_minus=0	max_min_left_plus=68	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=426	max_right=191	max_right_minus=0	max_right_plus=191	neg_log10_pos_hash_p_value=9.7	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=NA	pos_hash_score=3	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=9	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	325	.	1	16273	1	1	16690	1	0	alignment_overlap=7	coverage_minus=4	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=1.030e-01	junction_possible_overlap_registers=215	key=1__16273__1__1__16683__1__7____251__251__0__0	max_left=116	max_left_minus=116	max_left_plus=116	max_min_left=116	max_min_left_minus=116	max_min_left_plus=63	max_min_right=100	max_min_right_minus=100	max_min_right_plus=100	max_pos_hash_score=430	max_right=207	max_right_minus=128	max_right_plus=207	neg_log10_pos_hash_p_value=9.2	new_junction_coverage=0.06	new_junction_read_count=7	polymorphism_frequency=1.030e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.54	side_1_overlap=7	side_1_possible_overlap_registers=222	side_1_read_count=67	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.47	side_2_overlap=0	side_2_possible_overlap_registers=215	side_2_read_count=57	side_2_redundant=0	total_non_overlap_reads=7
JC	326	.	1	16394	1	1	16523	1	0	alignment_overlap=11	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=4.363e-02	junction_possible_overlap_registers=211	key=1__16394__1__1__16512__1__11____251__251__0__0	max_left=83	max_left_minus=83	max_left_plus=83	max_min_left=46	max_min_left_minus=0	max_min_left_plus=46	max_min_right=77	max_min_right_minus=63	max_min_right_plus=77	max_pos_hash_score=422	max_right=79	max_right_minus=63	max_right_plus=79	neg_log10_pos_hash_p_value=9.7	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=4.363e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.56	side_1_overlap=11	side_1_possible_overlap_registers=222	side_1_read_count=70	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.55	side_2_overlap=0	side_2_possible_overlap_registers=211	side_2_read_count=65	side_2_redundant=0	total_non_overlap_reads=3
JC	327	.	1	92437	1	1	92432	-1	0	alignment_overlap=123	coverage_minus=5	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=1.798e-01	junction_possible_overlap_registers=99	key=1__92437__1__1__92555__-1__123____251__251__0__0	max_left=105	max_left_minus=105	max_left_plus=83	max_min_left=43	max_min_left_minus=14	max_min_left_plus=43	max_min_right=48	max_min_right_minus=48	max_min_right_plus=48	max_pos_hash_score=198	max_right=113	max_right_minus=113	max_right_plus=107	neg_log10_pos_hash_p_value=3.4	new_junction_coverage=0.16	new_junction_read_count=9	polymorphism_frequency=1.798e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.72	side_1_overlap=123	side_1_possible_overlap_registers=222	side_1_read_count=90	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.76	side_2_overlap=0	side_2_possible_overlap_registers=99	side_2_read_count=42	side_2_redundant=0	total_non_overlap_reads=9
JC	328	.	1	108076	1	1	108131	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=3.409e-02	junction_possible_overlap_registers=212	key=1__108076__1__1__108121__1__10____251__251__0__0	max_left=237	max_left_minus=237	max_left_plus=236	max_min_left=38	max_min_left_minus=38	max_min_left_plus=0	max_min_right=67	max_min_right_minus=4	max_min_right_plus=67	max_pos_hash_score=424	max_right=104	max_right_minus=104	max_right_plus=67	neg_log10_pos_hash_p_value=8.6	new_junction_coverage=0.04	new_junction_read_count=5	polymorphism_frequency=3.409e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.18	side_1_overlap=10	side_1_possible_overlap_registers=222	side_1_read_count=147	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.20	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=143	side_2_redundant=0	total_non_overlap_reads=5
JC	329	.	1	174972	-1	1	175446	-1	0	alignment_overlap=12	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=2.139e-02	junction_possible_overlap_registers=210	key=1__174972__-1__1__175458__-1__12____251__251__0__0	max_left=114	max_left_minus=114	max_left_plus=69	max_min_left=114	max_min_left_minus=114	max_min_left_plus=69	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=420	max_right=171	max_right_minus=125	max_right_plus=171	neg_log10_pos_hash_p_value=9.7	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.139e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.25	side_1_overlap=12	side_1_possible_overlap_registers=222	side_1_read_count=156	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.08	side_2_overlap=0	side_2_possible_overlap_registers=210	side_2_read_count=127	side_2_redundant=0	total_non_overlap_reads=3
JC	330	.	1	250645	1	1	250669	1	0	alignment_overlap=7	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=5.239e-02	junction_possible_overlap_registers=215	key=1__250645__1__1__250662__1__7____251__251__0__0	max_left=216	max_left_minus=130	max_left_plus=216	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=48	max_min_right_minus=48	max_min_right_plus=32	max_pos_hash_score=430	max_right=48	max_right_minus=48	max_right_plus=32	neg_log10_pos_hash_p_value=9.2	new_junction_coverage=0.03	new_junction_read_count=4	polymorphism_frequency=5.239e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.59	side_1_overlap=7	side_1_possible_overlap_registers=222	side_1_read_count=73	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.61	side_2_overlap=0	side_2_possible_overlap_registers=215	side_2_read_count=74	side_2_redundant=0	total_non_overlap_reads=4
JC	331	.	1	255129	1	1	255507	1	0	alignment_overlap=4	coverage_minus=0	coverage_plus=5	flanking_left=251	flanking_right=251	frequency=3.530e-02	junction_possible_overlap_registers=218	key=1__255129__1__1__255503__1__4____251__251__0__0	max_left=181	max_left_minus=0	max_left_plus=181	max_min_left=98	max_min_left_minus=0	max_min_left_plus=98	max_min_right=61	max_min_right_minus=0	max_min_right_plus=61	max_pos_hash_score=436	max_right=149	max_right_minus=0	max_right_plus=149	neg_log10_pos_hash_p_value=8.7	new_junction_coverage=0.04	new_junction_read_count=5	polymorphism_frequency=3.530e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.21	side_1_overlap=4	side_1_possible_overlap_registers=222	side_1_read_count=150	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.03	side_2_overlap=0	side_2_possible_overlap_registers=218	side_2_read_count=126	side_2_redundant=0	total_non_overlap_reads=5
JC	332	.	1	288651	-1	1	288660	-1	0	alignment_overlap=8	coverage_minus=4	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=3.841e-02	junction_possible_overlap_registers=214	key=1__288651__-1__1__288668__-1__8____251__251__0__0	max_left=242	max_left_minus=242	max_left_plus=31	max_min_left=68	max_min_left_minus=68	max_min_left_plus=31	max_min_right=1	max_min_right_minus=1	max_min_right_plus=0	max_pos_hash_score=428	max_right=183	max_right_minus=183	max_right_plus=159	neg_log10_pos_hash_p_value=8.6	new_junction_coverage=0.04	new_junction_read_count=5	polymorphism_frequency=3.841e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.04	side_1_overlap=8	side_1_possible_overlap_registers=222	side_1_read_count=129	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.05	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=126	side_2_redundant=0	total_non_overlap_reads=5
JC	333	.	1	292479	-1	1	292584	-1	0	alignment_overlap=17	coverage_minus=3	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=205	key=1__292479__-1__1__292601__-1__17____251__251__1__1	max_left=108	max_left_minus=107	max_left_plus=108	max_min_left=108	max_min_left_minus=107	max_min_left_plus=108	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=410	max_right=177	max_right_minus=177	max_right_plus=111	neg_log10_pos_hash_p_value=8.4	new_junction_coverage=0.05	new_junction_read_count=6	polymorphism_frequency=NA	pos_hash_score=5	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=17	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=6
JC	334	.	1	294461	-1	1	294550	-1	0	alignment_overlap=5	coverage_minus=1	coverage_plus=6	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=217	key=1__294461__-1__1__294555__-1__5____251__251__1__1	max_left=196	max_left_minus=167	max_left_plus=196	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=72	max_min_right_minus=49	max_min_right_plus=72	max_pos_hash_score=434	max_right=72	max_right_minus=49	max_right_plus=72	neg_log10_pos_hash_p_value=9.8	new_junction_coverage=0.06	new_junction_read_count=7	polymorphism_frequency=NA	pos_hash_score=3	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=5	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=7
JC	335	.	1	395817	1	1	396044	1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=1.904e-02	junction_possible_overlap_registers=212	key=1__395817__1__1__396034__1__10____251__251__0__0	max_left=103	max_left_minus=72	max_left_plus=103	max_min_left=103	max_min_left_minus=72	max_min_left_plus=103	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=424	max_right=168	max_right_minus=168	max_right_plus=165	neg_log10_pos_hash_p_value=9.7	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=1.904e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.23	side_1_overlap=10	side_1_possible_overlap_registers=222	side_1_read_count=153	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.37	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=163	side_2_redundant=0	total_non_overlap_reads=3
JC	336	.	1	548931	1	1	549025	1	0	alignment_overlap=13	coverage_minus=1	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=3.743e-02	junction_possible_overlap_registers=209	key=1__548931__1__1__549012__1__13____251__251__0__0	max_left=198	max_left_minus=69	max_left_plus=198	max_min_left=70	max_min_left_minus=69	max_min_left_plus=70	max_min_right=67	max_min_right_minus=0	max_min_right_plus=67	max_pos_hash_score=418	max_right=167	max_right_minus=167	max_right_plus=108	neg_log10_pos_hash_p_value=8.5	new_junction_coverage=0.04	new_junction_read_count=5	polymorphism_frequency=3.743e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=13	side_1_possible_overlap_registers=222	side_1_read_count=117	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.26	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=147	side_2_redundant=0	total_non_overlap_reads=5
JC	337	.	1	657494	1	1	657526	1	0	alignment_overlap=11	coverage_minus=3	coverage_plus=0	flanking_left=251	flanking_right=251	frequency=2.158e-02	junction_possible_overlap_registers=211	key=1__657494__1__1__657515__1__11____251__251__0__0	max_left=189	max_left_minus=189	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=55	max_min_right_minus=55	max_min_right_plus=0	max_pos_hash_score=422	max_right=55	max_right_minus=55	max_right_plus=0	neg_log10_pos_hash_p_value=9.7	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.158e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.13	side_1_overlap=11	side_1_possible_overlap_registers=222	side_1_read_count=140	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.18	side_2_overlap=0	side_2_possible_overlap_registers=211	side_2_read_count=139	side_2_redundant=0	total_non_overlap_reads=3
JC	338	.	1	684105	-1	1	684127	-1	0	alignment_overlap=9	coverage_minus=3	coverage_plus=0	flanking_left=251	flanking_right=251	frequency=1.816e-02	junction_possible_overlap_registers=213	key=1__684105__-1__1__684136__-1__9____251__251__0__0	max_left=241	max_left_minus=241	max_left_plus=0	max_min_left=93	max_min_left_minus=93	max_min_left_plus=0	max_min_right=1	max_min_right_minus=1	max_min_right_plus=0	max_pos_hash_score=426	max_right=154	max_right_minus=154	max_right_plus=0	neg_log10_pos_hash_p_value=9.7	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=1.816e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.31	side_1_overlap=9	side_1_possible_overlap_registers=222	side_1_read_count=163	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.41	side_2_overlap=0	side_2_possible_overlap_registers=213	side_2_read_count=168	side_2_redundant=0	total_non_overlap_reads=3
JC	339	.	1	960213	1	1	960384	1	0	alignment_overlap=15	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=2.582e-02	junction_possible_overlap_registers=207	key=1__960213__1__1__960369__1__15____251__251__0__0	max_left=145	max_left_minus=122	max_left_plus=145	max_min_left=111	max_min_left_minus=0	max_min_left_plus=111	max_min_right=113	max_min_right_minus=113	max_min_right_plus=68	max_pos_hash_score=414	max_right=125	max_right_minus=113	max_right_plus=125	neg_log10_pos_hash_p_value=9.6	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.582e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.14	side_1_overlap=15	side_1_possible_overlap_registers=222	side_1_read_count=142	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=207	side_2_read_count=94	side_2_redundant=0	total_non_overlap_reads=3
JC	340	.	1	1038887	1	1	1039051	1	0	alignment_overlap=4	coverage_minus=3	coverage_plus=0	flanking_left=251	flanking_right=251	frequency=2.857e-02	junction_possible_overlap_registers=218	key=1__1038887__1__1__1039047__1__4____251__251__0__0	max_left=129	max_left_minus=129	max_left_plus=0	max_min_left=79	max_min_left_minus=79	max_min_left_plus=0	max_min_right=117	max_min_right_minus=117	max_min_right_plus=0	max_pos_hash_score=436	max_right=190	max_right_minus=190	max_right_plus=0	neg_log10_pos_hash_p_value=9.8	new_junction_coverage=0.02	new_junction_read_count=3	polymorphism_frequency=2.857e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.88	side_1_overlap=4	side_1_possible_overlap_registers=222	side_1_read_count=110	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.79	side_2_overlap=0	side_2_possible_overlap_registers=218	side_2_read_count=96	side_2_redundant=0	total_non_overlap_reads=3
JC	341	.	1	1115115	1	1	1115329	1	0	alignment_overlap=8	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=1.987e-02	junction_possible_overlap_registers=214	key=1__1115115__1__1__1115321__1__8____251__251__0__0	max_left=106	max_left_minus=106	max_left_plus=84	max_min_left=106	max_min_left_minus=106	max_min_left_plus=84	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=428	max_right=178	max_right_minus=136	max_right_plus=178	neg_log10_pos_hash_p_value=9.7	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=1.987e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.13	side_1_overlap=8	side_1_possible_overlap_registers=222	side_1_read_count=140	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.34	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=161	side_2_redundant=0	total_non_overlap_reads=3
JC	342	.	1	1144530	-1	1	1144534	-1	0	alignment_overlap=13	coverage_minus=3	coverage_plus=0	flanking_left=251	flanking_right=251	frequency=3.208e-02	junction_possible_overlap_registers=209	key=1__1144530__-1__1__1144547__-1__13____251__251__0__0	max_left=77	max_left_minus=77	max_left_plus=0	max_min_left=77	max_min_left_minus=77	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=418	max_right=235	max_right_minus=235	max_right_plus=0	neg_log10_pos_hash_p_value=9.6	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=3.208e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.82	side_1_overlap=13	side_1_possible_overlap_registers=222	side_1_read_count=102	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.73	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=85	side_2_redundant=0	total_non_overlap_reads=3
JC	343	.	1	1277995	-1	1	1278112	-1	0	alignment_overlap=5	coverage_minus=2	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=4.020e-02	junction_possible_overlap_registers=217	key=1__1277995__-1__1__1278117__-1__5____251__251__0__0	max_left=190	max_left_minus=190	max_left_plus=164	max_min_left=58	max_min_left_minus=0	max_min_left_plus=58	max_min_right=119	max_min_right_minus=80	max_min_right_plus=119	max_pos_hash_score=434	max_right=119	max_right_minus=80	max_right_plus=119	neg_log10_pos_hash_p_value=8.7	new_junction_coverage=0.05	new_junction_read_count=6	polymorphism_frequency=4.020e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.25	side_1_overlap=5	side_1_possible_overlap_registers=222	side_1_read_count=156	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.10	side_2_overlap=0	side_2_possible_overlap_registers=217	side_2_read_count=134	side_2_redundant=0	total_non_overlap_reads=6
JC	344	.	1	1373439	1	1	1373665	1	0	alignment_overlap=4	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.236e-02	junction_possible_overlap_registers=218	key=1__1373439__1__1__1373661__1__4____251__251__0__0	max_left=166	max_left_minus=166	max_left_plus=102	max_min_left=102	max_min_left_minus=0	max_min_left_plus=102	max_min_right=81	max_min_right_minus=81	max_min_right_plus=0	max_pos_hash_score=436	max_right=145	max_right_minus=81	max_right_plus=145	neg_log10_pos_hash_p_value=9.8	new_junction_coverage=0.02	new_junction_read_count=3	polymorphism_frequency=3.236e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.72	side_1_overlap=4	side_1_possible_overlap_registers=222	side_1_read_count=89	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.75	side_2_overlap=0	side_2_possible_overlap_registers=218	side_2_read_count=92	side_2_redundant=0	total_non_overlap_reads=3
JC	345	.	1	1382921	-1	1	1383115	-1	0	alignment_overlap=4	coverage_minus=1	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=5.318e-02	junction_possible_overlap_registers=218	key=1__1382921__-1__1__1383119__-1__4____251__251__0__0	max_left=241	max_left_minus=241	max_left_plus=122	max_min_left=122	max_min_left_minus=0	max_min_left_plus=122	max_min_right=6	max_min_right_minus=6	max_min_right_plus=0	max_pos_hash_score=436	max_right=132	max_right_minus=6	max_right_plus=132	neg_log10_pos_hash_p_value=9.8	new_junction_coverage=0.04	new_junction_read_count=5	polymorphism_frequency=5.318e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.88	side_1_overlap=4	side_1_possible_overlap_registers=222	side_1_read_count=109	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.58	side_2_overlap=0	side_2_possible_overlap_registers=218	side_2_read_count=71	side_2_redundant=0	total_non_overlap_reads=5
JC	346	.	1	1780891	1	1	1781133	1	0	alignment_overlap=8	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=2.585e-02	junction_possible_overlap_registers=214	key=1__1780891__1__1__1781125__1__8____251__251__0__0	max_left=193	max_left_minus=193	max_left_plus=132	max_min_left=88	max_min_left_minus=0	max_min_left_plus=88	max_min_right=109	max_min_right_minus=47	max_min_right_plus=109	max_pos_hash_score=428	max_right=155	max_right_minus=47	max_right_plus=155	neg_log10_pos_hash_p_value=9.7	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.585e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.88	side_1_overlap=8	side_1_possible_overlap_registers=222	side_1_read_count=109	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.01	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=121	side_2_redundant=0	total_non_overlap_reads=3
JC	347	.	1	1854493	1	1	1854932	1	0	alignment_overlap=12	coverage_minus=1	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=1.480e-01	junction_possible_overlap_registers=210	key=1__1854493__1__1__1854920__1__12____251__251__0__0	max_left=124	max_left_minus=39	max_left_plus=124	max_min_left=61	max_min_left_minus=39	max_min_left_plus=61	max_min_right=110	max_min_right_minus=0	max_min_right_plus=110	max_pos_hash_score=420	max_right=178	max_right_minus=114	max_right_plus=178	neg_log10_pos_hash_p_value=9.1	new_junction_coverage=0.03	new_junction_read_count=4	polymorphism_frequency=1.480e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.29	side_1_overlap=12	side_1_possible_overlap_registers=222	side_1_read_count=36	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.10	side_2_overlap=0	side_2_possible_overlap_registers=210	side_2_read_count=12	side_2_redundant=0	total_non_overlap_reads=4
JC	348	.	1	1858411	-1	1	1858579	-1	0	alignment_overlap=7	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=3.563e-02	junction_possible_overlap_registers=215	key=1__1858411__-1__1__1858586__-1__7____251__251__0__0	max_left=183	max_left_minus=183	max_left_plus=154	max_min_left=47	max_min_left_minus=47	max_min_left_plus=0	max_min_right=69	max_min_right_minus=61	max_min_right_plus=69	max_pos_hash_score=430	max_right=69	max_right_minus=69	max_right_plus=69	neg_log10_pos_hash_p_value=9.8	new_junction_coverage=0.02	new_junction_read_count=3	polymorphism_frequency=3.563e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.67	side_1_overlap=7	side_1_possible_overlap_registers=222	side_1_read_count=83	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.68	side_2_overlap=0	side_2_possible_overlap_registers=215	side_2_read_count=82	side_2_redundant=0	total_non_overlap_reads=3
JC	349	.	1	1953936	1	1	1954035	1	0	alignment_overlap=11	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=2.073e-02	junction_possible_overlap_registers=211	key=1__1953936__1__1__1954024__1__11____251__251__0__0	max_left=230	max_left_minus=80	max_left_plus=230	max_min_left=84	max_min_left_minus=80	max_min_left_plus=84	max_min_right=9	max_min_right_minus=0	max_min_right_plus=9	max_pos_hash_score=422	max_right=160	max_right_minus=160	max_right_plus=156	neg_log10_pos_hash_p_value=9.7	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.073e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.24	side_1_overlap=11	side_1_possible_overlap_registers=222	side_1_read_count=154	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.16	side_2_overlap=0	side_2_possible_overlap_registers=211	side_2_read_count=137	side_2_redundant=0	total_non_overlap_reads=3
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UN	351	.	1	5390	6098
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