mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.29.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007790 | 1,303 | 0 | T | G | 39.8% | 85.4 / 142.0 | 123 | intergenic (+307/‑276) | SAUSA300_RS14705/SAUSA300_RS14710 | replication protein/membrane protein |
| * | NC_007790 | 2,451 | 0 | G | C | 33.9% | 1251.7 / inf | 892 | T75R (ACA→AGA) | SAUSA300_RS14715 | hypothetical protein |
| * | NC_007790 | 2,456 | 1 | . | A | 33.7% | 832.7 / inf | 902 | coding (219/582 nt) | SAUSA300_RS14715 | hypothetical protein |
| * | NC_007790 | 918 | 0 | A | G | 32.0% | 250.6 / 139.1 | 227 | T213T (ACA→ACG) | SAUSA300_RS14705 | replication protein |
| * | NC_007790 | 931 | 0 | G | . | 31.2% | 232.2 / 144.3 | 125 | coding (652/717 nt) | SAUSA300_RS14705 | replication protein |
| * | NC_007790 | 849 | 0 | A | G | 28.8% | 1433.6 / inf | 1183 | K190K (AAA→AAG) | SAUSA300_RS14705 | replication protein |
| * | NC_007790 | 898 | 0 | G | A | 26.6% | 763.7 / 270.6 | 523 | A207T (GCA→ACA) | SAUSA300_RS14705 | replication protein |
| * | NC_007790 | 875 | 0 | T | C | 26.1% | 1418.6 / inf | 862 | V199A (GTC→GCC) | SAUSA300_RS14705 | replication protein |
| * | NC_007790 | 1,272 | 0 | A | G | 25.5% | 166.9 / 47.5 | 106 | intergenic (+276/‑307) | SAUSA300_RS14705/SAUSA300_RS14710 | replication protein/membrane protein |
| * | NC_007790 | 1,317 | 0 | G | T | 25.2% | 153.8 / 65.8 | 129 | intergenic (+321/‑262) | SAUSA300_RS14705/SAUSA300_RS14710 | replication protein/membrane protein |
| * | NC_007790 | 1,276 | 0 | C | A | 24.8% | 176.3 / 69.2 | 109 | intergenic (+280/‑303) | SAUSA300_RS14705/SAUSA300_RS14710 | replication protein/membrane protein |
| * | NC_007790 | 1,259 | 0 | C | A | 21.8% | 100.7 / 24.9 | 55 | intergenic (+263/‑320) | SAUSA300_RS14705/SAUSA300_RS14710 | replication protein/membrane protein |
| * | NC_007790 | 1,243 | 0 | A | T | 21.1% | 107.0 / 24.0 | 58 | intergenic (+247/‑336) | SAUSA300_RS14705/SAUSA300_RS14710 | replication protein/membrane protein |
| * | NC_007790 | 1,244 | 0 | A | T | 21.1% | 107.2 / 24.9 | 58 | intergenic (+248/‑335) | SAUSA300_RS14705/SAUSA300_RS14710 | replication protein/membrane protein |
| * | NC_007790 | 1,254 | 0 | A | T | 20.7% | 104.3 / 25.1 | 58 | intergenic (+258/‑325) | SAUSA300_RS14705/SAUSA300_RS14710 | replication protein/membrane protein |