Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0077909310G.31.2% 232.2 / 144.3 125coding (652/717 nt)SAUSA300_RS14705replication protein
Reads supporting (aligned to +/- strand):  ref base G (65/21);  new base . (38/1);  total (103/22)
Fisher's exact test for biased strand distribution p-value = 1.99e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 129 total aligned reads displayed.

GGATTGCTTAAACAAAAACATAAAATTTTAAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAG  >  NC_007790/832‑996
                                                                                                   |                                                                 
ggATTGCTTAAACAAAAACATAAAATTTTAAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGAGATGAAGATAAAACAACAGACgaagaag                                                                   >  1:5396997/1‑100 (MQ=255)
   ctGCTTAAACAAAAACATAAAATTTTAAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGaaa                                                                >  1:3919006/2‑100 (MQ=255)
     gCTTAAACAAAAACATAAAATTTTAAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGaaaaa                                                              >  1:4273027/1‑100 (MQ=255)
     gCTTAAACAAAAACATAAAATTTTAAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGaaaaa                                                              >  1:4848937/1‑100 (MQ=255)
       ttAAACAAAAACATAAAATTTTAAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACgagaaagatcggaa                                                            >  1:2820782/1‑94 (MQ=255)
        tAAACAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAAATTGATTAATACAAGCGATGAAGATAAAACGACAGACGAAGAA‑AAAAAGcac                                                          >  1:5804575/1‑100 (MQ=255)
        tAAACAAAAACATAAAATTTTAAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACGGACGAAGAAGAAAAAGca                                                           >  1:4846332/1‑100 (MQ=255)
        tAAACAAAAACATAAAATTTTAAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACgaagaagatcggaag                                                           >  1:1025174/1‑93 (MQ=255)
        tAAACAAAAACATAAAATTTTAAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGca                                                           >  1:2080827/1‑100 (MQ=255)
        tAAACAAAAACATAAAATTTTAAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGca                                                           >  1:4773554/1‑100 (MQ=255)
        tAAACAAAAACATAAAATTTTAAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGca                                                           >  1:5517693/1‑100 (MQ=255)
         aaaCAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAA‑AAAAAGcaca                                                         >  1:4145605/1‑100 (MQ=255)
         aaaCAAAAACATAAAATTTTAAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGcac                                                          >  1:656648/1‑100 (MQ=255)
             aaaaaCATAAAATTTTAAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTc                                                      >  1:1583306/1‑100 (MQ=255)
                cgcATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAA‑AAAAAGCACATTCAAtt                                                  >  1:5627250/3‑100 (MQ=255)
                aaCATAAAATTTTAAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAAt                                                   >  1:245274/1‑100 (MQ=255)
                  cATAAAATTTTAAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAAttg                                                 <  1:2283956/100‑2 (MQ=255)
                  cATAAAATTTTAAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTa                                                 >  1:727595/1‑100 (MQ=255)
                  cATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAA‑AAAAAGCACATTCAATTAc                                                >  1:2876277/1‑100 (MQ=255)
                     aaaaTTTTAAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCg                                              <  1:4184288/100‑1 (MQ=255)
                     aaaaTTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAA‑AAAAAGCACATTCAATTACCGc                                             <  1:2110983/100‑1 (MQ=255)
                      aaaTTTTAAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGc                                             <  1:5057948/100‑1 (MQ=255)
                       aaTTTTAAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGcg                                            <  1:5274036/100‑2 (MQ=255)
                       aaTTTTAAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCa                                            <  1:3042894/100‑1 (MQ=255)
                         ttttAAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAAt                                          <  1:5861721/100‑1 (MQ=255)
                         ttttAAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAAt                                          <  1:458637/100‑1 (MQ=255)
                         ttttAAACTTAGACGATGTCAAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCagg                                          <  1:3443875/100‑3 (MQ=255)
                           ttAAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAAtgt                                        >  1:1119849/1‑98 (MQ=255)
                            tAAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTg                                       >  1:3612794/1‑100 (MQ=255)
                            tAAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTg                                       >  1:1965255/1‑100 (MQ=255)
                             aatcTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGGTAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTgg                                      <  1:830445/97‑1 (MQ=255)
                             aaaCTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTgg                                      >  1:1360363/1‑100 (MQ=255)
                             aaaCTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTCgg                                      >  1:5000397/1‑100 (MQ=255)
                             aaaCTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATATgg                                      >  1:5326922/1‑100 (MQ=255)
                              aaCTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGa                                     <  1:2203084/100‑1 (MQ=255)
                              aaCTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGa                                     <  1:1680864/100‑1 (MQ=255)
                                attAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACcacagatcggaag                                   >  1:5984050/2‑91 (MQ=255)
                                 ttAGACGATGCCGAAGATGGTGATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAA‑AAAAAGCACATTCAATTACCGCAACTTGGaagat                                 >  1:331296/1‑97 (MQ=255)
                                 ctAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAACTTGGaaga                                  >  1:1062276/2‑98 (MQ=255)
                                 ccaGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGaaga                                  >  1:3999407/3‑98 (MQ=255)
                                  tAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGagatc                                 >  1:4175456/1‑96 (MQ=255)
                                  tAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGaagat                                 >  1:3405768/1‑97 (MQ=255)
                                  tAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGaagat                                 >  1:1151619/1‑97 (MQ=255)
                                  tAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAAttt                                 <  1:2853654/100‑1 (MQ=255)
                                  tAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATATGGaagat                                 >  1:2241671/1‑97 (MQ=255)
                                  tAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAA‑AAAAAGCACATTCAATTACCGCAATGTGGaagatc                                >  1:3551820/1‑96 (MQ=255)
                                  tAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAA‑AAAAAGCACATTCAATTACCGCAATCTGGaagatc                                >  1:5686522/1‑96 (MQ=255)
                                  tAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAA‑AAAAAGCACATTCAATTACCGCAATCTGGaagatc                                >  1:4091503/1‑96 (MQ=255)
                                   aGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGCAGAAGAAAAAGCACATTCAATTACCGCAATTTGGaagatc                                >  1:1997255/1‑96 (MQ=255)
                                   aGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGagatcg                                >  1:1261154/1‑95 (MQ=255)
                                   aGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGaagatc                                >  1:1646264/1‑96 (MQ=255)
                                   aGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAAGTTGGaagatc                                >  1:5567608/1‑96 (MQ=255)
                                   aGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAA‑AAAAAGCACATTCAATTACCGCAATCTGGaaagatc                               >  1:1338259/1‑95 (MQ=255)
                                   aGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAA‑AAAAAGCACATTCAATTACCGCAATATGGaagatcg                               >  1:146823/1‑95 (MQ=255)
                                   aGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAA‑AAAAAGCACATTCAATTACCGCAACTTGGaagatca                               >  1:2675538/1‑95 (MQ=255)
                                    tgcGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTAGGaagatcg                               >  1:5280192/3‑95 (MQ=255)
                                     ccGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGaagatcgg                              >  1:1696415/2‑94 (MQ=255)
                                     ccGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAAGTTGGaagatcgg                              >  1:3382445/2‑94 (MQ=255)
                                     cagATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTAGGaagatcgg                              >  1:678912/3‑94 (MQ=255)
                                     aagATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGaagatcgg                              >  1:588241/3‑94 (MQ=255)
                                     aCGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGCAGAAGAAAAAGCACATTCAATTACCGCAATTTGGaaagatcg                              >  1:5617135/1‑94 (MQ=255)
                                     aCGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGaagatcgg                              >  1:3881596/1‑94 (MQ=255)
                                     aCGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAAtagatc                              >  1:4323842/1‑95 (MQ=255)
                                     aCGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAAGTTGGaagatcgg                              >  1:411254/1‑94 (MQ=255)
                                     aCGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAAGTTGGaagatcgg                              >  1:5119443/1‑94 (MQ=255)
                                     aCGATGTCGAAGATGGTAATTTGATTAATGCAAGTGACGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAACTTGGaagatcgg                              >  1:1759579/1‑94 (MQ=255)
                                     aCGATGTCGAAGATGGAAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATATGGaagatcgg                              >  1:3784138/1‑94 (MQ=255)
                                     aCGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAA‑AAAAAGCACATTCAATTACCGCAACTTGGaagatcgga                             >  1:4190946/1‑93 (MQ=255)
                                      tcaTGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAA‑AAAAAGCACATTCAATTACCGCAATTTGGaagatcggaa                            >  1:4395918/3‑92 (MQ=255)
                                      cGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGaagatcgga                             >  1:4653651/1‑93 (MQ=255)
                                      agATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAA‑AAAAAGCACATTCAATTACCGCAATTTGGAAtagatcgg                            >  1:4440299/2‑93 (MQ=255)
                                      acaTGTCGAAGATGGTAATTTGATTAATGCAGGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTAGaagatcgga                             >  1:4292728/3‑93 (MQ=255)
                                      acaTGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGaagatcgga                             >  1:2389405/3‑93 (MQ=255)
                                       taTGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAA‑AAAAAGCACATTCAATTACCGCAATCTGGaaagatcggaa                           >  1:1209300/2‑91 (MQ=255)
                                       gATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATCTGGaagatcggaa                            >  1:3229966/1‑92 (MQ=255)
                                       gATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATACAACGACAGACGAAGAA‑AAAAAGCACATTCAATTACCGCAATTTGGaagatcggaag                           >  1:5497504/1‑91 (MQ=255)
                                       gATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAA‑AAAAAGCACATTGAATTACCGCAATTTGGaagatcggaag                           >  1:3203790/1‑91 (MQ=255)
                                       gATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAA‑AAAAAGCACATTCAATTACCGCAATTTGGaagatcggaag                           >  1:4669924/1‑91 (MQ=255)
                                       gATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAA‑AAAAAGCACATTCAATTACCGCAATTTGGaagatcggaag                           >  1:1192081/1‑91 (MQ=255)
                                       gATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAA‑AAAAAGCACATTCAATTACCGCAATTTGGaagatcggaag                           >  1:6080090/1‑91 (MQ=255)
                                       gATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAA‑AAAAAGCACATTCAATTACCGCAATTTGGaacgagatcgg                           >  1:2637571/1‑91 (MQ=255)
                                       gATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAA‑AAAAAGCACATTCAATTACCGCAATTTGGaaagatcggaa                           >  1:3435796/1‑91 (MQ=255)
                                       gATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAA‑AAAAAGCACATTCAATTACCGCAACTTGGaagatcggaag                           >  1:15390/1‑91 (MQ=255)
                                       gATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGAAGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaaa                            >  1:2593290/1‑100 (MQ=255)
                                       aaTGCCGAAGATGGAAATTTGATTAATAAAAGTGATGAAGATAAAAAGACAGACGAAGAA‑AAAAAGTACATTTAATTACCGCAAGTTGGaagatcggaag                           >  1:2174167/2‑91 (MQ=255)
                                        aTGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAA‑AAAAAGCACATTCAATTACCGCAATTTGGaagatcggaaga                          >  1:2230578/1‑90 (MQ=255)
                                        aTGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAA‑AAAAAGCACATTCAATTACCGCAATTTGGaagatcggaaga                          >  1:242359/1‑90 (MQ=255)
                                        aTGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAA‑AAAAAGCACATTCAATTACCGCAATTTGGaagatcggaaga                          >  1:401428/1‑90 (MQ=255)
                                        aTGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAA‑AAAAAGCACATTCAATTACCGCAATTAGGaagatcggaaga                          >  1:39574/1‑90 (MQ=255)
                                         tgccGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAA‑AAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGc                         >  1:3683568/4‑100 (MQ=255)
                                           tCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCa                        <  1:3987760/100‑1 (MQ=255)
                                            cGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCaa                       >  1:1079051/1‑100 (MQ=255)
                                             gAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCaaa                      <  1:1394753/100‑1 (MQ=255)
                                                   ggTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAattatt                >  1:4169198/1‑100 (MQ=255)
                                                        tttGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTa           <  1:5031980/100‑1 (MQ=255)
                                                        tttGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTa           <  1:4215957/100‑1 (MQ=255)
                                                               actGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACAtt    >  1:1848322/3‑100 (MQ=255)
                                                               aaTGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACAtt    <  1:3547791/100‑1 (MQ=255)
                                                                 tGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACagatc  >  1:820300/1‑96 (MQ=255)
                                                                 aacAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAAAAAttta  >  1:4903658/3‑98 (MQ=255)
                                                                                                   |                                                                 
GGATTGCTTAAACAAAAACATAAAATTTTAAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAG  >  NC_007790/832‑996

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑