Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0077902,4510GC33.9% 1251.7 / inf 892T75R (ACA→AGA) SAUSA300_RS14715hypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (34/556);  new base C (0/302);  total (34/858)
Fisher's exact test for biased strand distribution p-value = 8.36e-07
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.41e-01

Only 100 of 944 total aligned reads displayed.

GTTTTCTTTTTATTCTCTATGTCGTTTTTTAGTTTTTGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCAATGT  >  NC_007790/2352‑2550
                                                                                                   |                                                                                                    
gTTTTCTTTTTATTCTCTATGTCGTTTTTTAGTTTTTGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTg                                                                                                      <  1:3848002/100‑1 (MQ=255)
gTTTTCTTTTTATTCTCTATGTCGTTTTTTAGTTTTTGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTg                                                                                                      <  1:42740/100‑1 (MQ=255)
gTTTTCTTTTTATTCTCTATGTCGTTTTTTAGTTTTTGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTg                                                                                                      <  1:5005716/100‑1 (MQ=255)
 ttttCTTTTTATTCTCTATGTCGTTTTTTAGTTTTTGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGt                                                                                                     <  1:4360905/100‑1 (MQ=255)
 ttttCTTTTTATTCTCTATGTCGTTTTTTAGTTTTTGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGt                                                                                                     <  1:2089225/100‑1 (MQ=255)
  tttCTTTTTATTCTCTATGTCGTTTTTTAGTTTTTGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTgaa                                                                                                    <  1:1155936/100‑3 (MQ=255)
  tttCTTTTTATTCTCTATGTCGTTTTTTAGTTTTTGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGta                                                                                                    <  1:2266941/100‑2 (MQ=255)
  tttCTTTTTAGTCTCTATGTCGTTTTTTAGTTTTTGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTgat                                                                                                    <  1:5638689/100‑3 (MQ=255)
      tttttATTCTCTATGTCGTTTTTTAGTTTTTGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑t                                                                                               <  1:4706718/100‑1 (MQ=255)
        tttATTCTCTATGTCGTTTTTTAGTTTTTGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑Tcg                                                                                             <  1:2154204/100‑2 (MQ=255)
         ttATTCTCTATGTCGTTTTTTAGTTTTTGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATC‑TTAGCTGTTCCG‑TCttt                                                                                           <  1:94757/100‑1 (MQ=255)
          tccgatctATGTCGTTTTTTAGTTTTTGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCttt                                                                                           <  1:2709645/95‑1 (MQ=255)
          tccgatctATGTCGTTTTTTAGTTTTTGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCttt                                                                                           <  1:3264523/95‑1 (MQ=255)
          tATTCTCTATGTCGTTTTTTAGTTTTTGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCttt                                                                                           <  1:3471251/100‑1 (MQ=255)
          tATTCTCTATGTCGTTTTTTAGTTTTTGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCttt                                                                                           <  1:3322299/100‑1 (MQ=255)
          tATTCTCTATGTCGTTTTTTAGTTTTTGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCttt                                                                                           <  1:5581864/100‑1 (MQ=255)
          tATTCTCTATGTCGTTTTTTAGTTTTTGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCttt                                                                                           <  1:3172770/100‑1 (MQ=255)
          tATTCTCTATGTCGTTTTTTAGTTTTTGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCttt                                                                                           <  1:3095636/100‑1 (MQ=255)
          cgatctcTATGCCGTTTTTTAGTTTTTGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCtgg                                                                                           <  1:666259/97‑3 (MQ=255)
           aTTCTCTATGTCGTTTTTTAGTTTTTGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTa                                                                                          <  1:6047787/100‑1 (MQ=255)
              ctctATGTCGTTTTTTAGTTTTTGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCt                                                                                       <  1:2954073/100‑1 (MQ=255)
              atctATGTCGTTTTTTAGTTTTTGGAATCCTTCAGGAACATATCCGTATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCt                                                                                       <  1:2318782/99‑1 (MQ=255)
               tctATGTCGTTTTTTAGTTTTTGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTa                                                                                      <  1:2859164/100‑1 (MQ=255)
               tctATGTCGTTTTTTAGTTTTTGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTa                                                                                      <  1:3889121/100‑1 (MQ=255)
                 tATGTCGTTTTTTAGTTTTTGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTaag                                                                                    <  1:3920289/100‑2 (MQ=255)
                               gTTTTTGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGcc                                                                      <  1:4775647/100‑1 (MQ=255)
                               gTTTTTGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGcc                                                                      <  1:911655/100‑1 (MQ=255)
                                 ttttGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCat                                                                    <  1:4020216/100‑1 (MQ=255)
                                 ttttGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCag                                                                    <  1:4864409/100‑2 (MQ=255)
                                  tttGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCata                                                                   <  1:4814851/100‑1 (MQ=255)
                                  tttGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCata                                                                   <  1:3212935/100‑1 (MQ=255)
                                   ttGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCatta                                                                  <  1:586208/100‑3 (MQ=255)
                                   ttGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCatat                                                                  <  1:4485406/100‑1 (MQ=255)
                                   ttGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCatat                                                                  <  1:4066059/100‑1 (MQ=255)
                                   ttGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCatat                                                                  <  1:1406035/100‑1 (MQ=255)
                                   ttGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCatat                                                                  <  1:5194079/100‑1 (MQ=255)
                                   ttGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCatat                                                                  <  1:5942109/100‑1 (MQ=255)
                                       aaTCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGt                                                              <  1:1584512/100‑1 (MQ=255)
                                        aTCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTa                                                             <  1:5975798/100‑1 (MQ=255)
                                          ccTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTaca                                                           <  1:4536944/100‑3 (MQ=255)
                                                       atccatatcGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTc                                              <  1:2424297/100‑1 (MQ=255)
                                                        tccatatcGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCa                                             <  1:2907442/100‑1 (MQ=255)
                                                                     ttGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGt                                <  1:1249821/100‑1 (MQ=255)
                                                                     ttGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGt                                >  1:1347744/1‑100 (MQ=255)
                                                                     ttGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGt                                >  1:1757165/1‑100 (MQ=255)
                                                                        gCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTa                             <  1:2005240/100‑1 (MQ=255)
                                                                         cATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTaa                            <  1:3751312/100‑1 (MQ=255)
                                                                                tAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCa                     <  1:1904417/100‑1 (MQ=255)
                                                                                         gacgtgtgCTCTTCCGATCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGttttt             <  1:5128085/93‑1 (MQ=255)
                                                                                             ttAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTg        >  1:1955012/1‑100 (MQ=255)
                                                                                             ttAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTg        >  1:4645860/1‑100 (MQ=255)
                                                                                             ttAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTg        >  1:1093988/1‑100 (MQ=255)
                                                                                             ttAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTg        >  1:4222930/1‑100 (MQ=255)
                                                                                              tAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTgg       <  1:3582805/100‑2 (MQ=255)
                                                                                              tAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGc       <  1:4000635/100‑1 (MQ=255)
                                                                                              tAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGc       <  1:3046525/100‑1 (MQ=255)
                                                                                              tAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGc       <  1:5488449/100‑1 (MQ=255)
                                                                                              gtgCTCTTCCGATCTTTGCCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCtt        <  1:5295672/98‑2 (MQ=255)
                                                                                               tgCTCTTCCGATCTTTGTCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGc       <  1:2584594/99‑1 (MQ=255)
                                                                                               tgCTCTTCCGATCTTTGTCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGc       <  1:2623008/99‑1 (MQ=255)
                                                                                               tgCTCTTCCGATCTTTGTCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTGCGTTTAAAGTTTCAACGTTTTTATCTGc       <  1:5415573/99‑1 (MQ=255)
                                                                                               tgCTCTTCCGATCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGc       <  1:1813935/99‑1 (MQ=255)
                                                                                               tgCTCTTCCGATCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGc       <  1:3379209/99‑1 (MQ=255)
                                                                                               tgCTCTTCCGATCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGc       <  1:1674897/99‑1 (MQ=255)
                                                                                               tgCTCTTCCGATCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGc       <  1:3247181/99‑1 (MQ=255)
                                                                                               tgCTCTTCCGATCTTTA‑CTTAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa      <  1:2382376/99‑1 (MQ=255)
                                                                                               tgCTCTTCCGATCTTTA‑CTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa      <  1:1004648/99‑1 (MQ=255)
                                                                                               tgCTCTTCCGATCTTT‑TCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa      <  1:1628927/99‑1 (MQ=255)
                                                                                               tgCTCTTCCGATCTTCATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGc       <  1:151908/99‑1 (MQ=255)
                                                                                               aGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTTGTTTAAAGTTTCAACGTTTTTATCTGCa      <  1:5679475/100‑1 (MQ=255)
                                                                                               aGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGcg      <  1:5902817/100‑2 (MQ=255)
                                                                                               aGCTGTTCCG‑TCTTTATCTAAAATAATAATTTCGCCATGTATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa      <  1:2791758/100‑1 (MQ=255)
                                                                                                gCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTTGTTTAAAGTTTCAACGTTTTTATCTGCaa     <  1:2055569/100‑1 (MQ=255)
                                                                                                gCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCat     <  1:3647503/100‑2 (MQ=255)
                                                                                                gCTCTTCCGATCTTTTCCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa      <  1:1294779/100‑1 (MQ=255)
                                                                                                gCTCTTCCGATCTTTGTTTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa      <  1:2190450/100‑1 (MQ=255)
                                                                                                gCTCTTCCGATCTTTGTCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa      <  1:1062238/100‑1 (MQ=255)
                                                                                                gCTCTTCCGATCTTTGTCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa      <  1:3130967/100‑1 (MQ=255)
                                                                                                gCTCTTCCGATCTTTGCCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa      <  1:3807286/100‑1 (MQ=255)
                                                                                                gCTCTTCCGATCTTTCCCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa      <  1:3769844/100‑1 (MQ=255)
                                                                                                gCTCTTCCGATCTTTATTTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa      <  1:5357382/100‑1 (MQ=255)
                                                                                                gCTCTTCCGATCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa      <  1:1490973/100‑1 (MQ=255)
                                                                                                gCTCTTCCGATCTTTATATAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa      <  1:5234396/100‑1 (MQ=255)
                                                                                                gCTCTTCCGATCTTTATATAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa      <  1:5055432/100‑1 (MQ=255)
                                                                                                gCTCTTCCGATCTTTATATAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa      <  1:343268/100‑1 (MQ=255)
                                                                                                gCTCTTCCGATCTTTAGCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa      <  1:2999998/100‑1 (MQ=255)
                                                                                                gCTCTTCCGATCTTTACCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGcg      <  1:715258/100‑2 (MQ=255)
                                                                                                gCTCTTCCGATCTTTACCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa      <  1:4586670/100‑1 (MQ=255)
                                                                                                gCTCTTCCGATCTTTAACTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa      <  1:782175/100‑1 (MQ=255)
                                                                                                gCTCTTCCGATCTTAATTTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTGTCAATTTCGTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa      <  1:4118098/100‑1 (MQ=255)
                                                                                                gCTCTTCCGATCTGTGTCTAAAATGATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa      <  1:5525871/100‑1 (MQ=255)
                                                                                                gCTCTTCCGATCTGTGTCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa      <  1:4303554/100‑1 (MQ=255)
                                                                                                gCTCTTCCGATCTGTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa      <  1:4436404/100‑1 (MQ=255)
                                                                                                gCTCTTCCGATCTATATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa      <  1:842687/100‑1 (MQ=255)
                                                                                                gCTCTTCCGATCTATATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa      <  1:5778406/100‑1 (MQ=255)
                                                                                                gCTCTTCCGATCTATATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa      <  1:4905982/100‑1 (MQ=255)
                                                                                                 cTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTggcaa    <  1:2216182/100‑5 (MQ=255)
                                                                                                 cTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCaaa    <  1:4181587/100‑2 (MQ=255)
                                                                                                  tGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCaaca   <  1:3536944/100‑3 (MQ=255)
                                                                                                   gTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCAATGt  <  1:2506057/100‑1 (MQ=255)
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GTTTTCTTTTTATTCTCTATGTCGTTTTTTAGTTTTTGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCAATGT  >  NC_007790/2352‑2550

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑