Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0077902,4561.A33.7% 832.7 / inf 902coding (219/582 nt)SAUSA300_RS14715hypothetical protein
Reads supporting (aligned to +/- strand):  ref base . (36/562);  new base A (0/304);  total (36/866)
Fisher's exact test for biased strand distribution p-value = 5.40e-07
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.85e-03

Only 100 of 918 total aligned reads displayed.

CTTTTTATTCTCTATGTCGTTTTTTAGTTTTTGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCAATGTTAT  >  NC_007790/2357‑2553
                                                                                                    |                                                                                                 
    ttATTCTCTATGTCGTTTTTTAGTTTTTGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATC‑TTAGCTGTTCCG‑TCttt                                                                                              <  1:94757/100‑1 (MQ=255)
     tccgatctATGTCGTTTTTTAGTTTTTGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCgggtgt                                                                                               <  1:1928052/95‑6 (MQ=255)
     tATTCTCTGTGTCGTTTTTTAGTTTTTGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCttt                                                                                              <  1:4702049/100‑1 (MQ=255)
      ccgatctATGTCGTTTTTTAGTTTTTGGAATCCTTCAGGAACATATCCATATCGATATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTa                                                                                             <  1:4798458/96‑1 (MQ=255)
      ccgatctATGTCGTTTTTTAGTTTTTGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTa                                                                                             <  1:3409138/96‑1 (MQ=255)
      ccgatctATGTCATTTTTTAGTTTTTGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCggcgtcg                                                                                              <  1:2400604/96‑7 (MQ=255)
      ccgatctATGTCATTTTTTAGTTTTTGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTa                                                                                             <  1:539196/96‑1 (MQ=255)
         ctctATGTCGTTTTTTAGTTTTTGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCt                                                                                          <  1:4304566/100‑1 (MQ=255)
          tcttcgccGTTTTTTAGTTTTTGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTa                                                                                         <  1:653815/93‑1 (MQ=255)
          tctATGTCGTTTTTTAGTTTTTGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCtcctgcgt                                                                                         <  1:447734/100‑8 (MQ=255)
          tctATGTCGTTTTTTAGTTTTTGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTa                                                                                         <  1:527204/100‑1 (MQ=255)
          tctATGTCGTTTTTTAGTTTTTGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTa                                                                                         <  1:3446225/100‑1 (MQ=255)
          tctATGTCGTTTTTTAGTTTTTGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTa                                                                                         <  1:3889121/100‑1 (MQ=255)
          tccgatctgTTTTATAGTTTTTGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTa                                                                                         <  1:3306614/92‑1 (MQ=255)
            tATGTCGTTTTTTAGTTTTTGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTaag                                                                                       <  1:3920289/100‑2 (MQ=255)
                  gTTTTTTAGTTTTTGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTAAaataata                                                                                 <  1:3788980/100‑1 (MQ=255)
                          gTTTTTGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGcc                                                                         <  1:354224/100‑1 (MQ=255)
                           tttttGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCa                                                                        <  1:4223410/100‑1 (MQ=255)
                           tttttGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCa                                                                        <  1:5549208/100‑1 (MQ=255)
                            ttttGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCat                                                                       <  1:4078084/100‑1 (MQ=255)
                            ttttGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCat                                                                       <  1:1975770/100‑1 (MQ=255)
                            ttttGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCat                                                                       <  1:3665669/100‑1 (MQ=255)
                            ttttGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCag                                                                       <  1:2597985/100‑2 (MQ=255)
                             tttGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCata                                                                      <  1:1738206/100‑1 (MQ=255)
                              ttGGAATCCTTCAGGAACATATCCATATCGATATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCatat                                                                     <  1:5013377/100‑1 (MQ=255)
                              ttGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCatgc                                                                     <  1:5753318/100‑3 (MQ=255)
                              ttGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCatat                                                                     <  1:3757482/100‑1 (MQ=255)
                              ttGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCatat                                                                     <  1:5194079/100‑1 (MQ=255)
                                  aaTCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGt                                                                 <  1:4642479/100‑1 (MQ=255)
                                  aaTCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGt                                                                 <  1:559928/100‑1 (MQ=255)
                                    tCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTAt                                                               <  1:902518/100‑1 (MQ=255)
                                     ccTTCAGGGACATATCCATATCGAGATTTGGCATTTTCTAGATTAATATCTTTAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTAtt                                                              <  1:3261775/100‑1 (MQ=255)
                                     ccTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTAtt                                                              <  1:5901012/100‑1 (MQ=255)
                                       ttCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTAtttt                                                            >  1:5225053/1‑100 (MQ=255)
                                                ccatccatatcGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCtttt                                                   >  1:2675636/3‑100 (MQ=255)
                                                   tccatatcGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCa                                                <  1:2212836/100‑1 (MQ=255)
                                                     catatcGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAAt                                              <  1:2873612/100‑1 (MQ=255)
                                                                  ggCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGttg                                 <  1:1307291/100‑2 (MQ=255)
                                                                   gCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTa                                <  1:3037746/100‑1 (MQ=255)
                                                                   gCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTa                                <  1:5433732/100‑1 (MQ=255)
                                                                   gCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTa                                <  1:2546196/100‑1 (MQ=255)
                                                                           tAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCa                        <  1:6023478/100‑1 (MQ=255)
                                                                             gATTAACATCTTTAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCaat                      <  1:2298456/100‑2 (MQ=255)
                                                                                 tcagacgtgtgCTCTTCCGATCTTTATTCAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGtt                   <  1:491718/90‑1 (MQ=255)
                                                                                   agacgtgtgCTCTTCCGATCTTTA‑CTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGttttt                <  1:1524585/92‑1 (MQ=255)
                                                                                    gacgtgtgCTCTTCCGATCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGttttt                <  1:5128085/93‑1 (MQ=255)
                                                                                         tAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGc          <  1:77721/100‑1 (MQ=255)
                                                                                         tAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGc          <  1:3845926/100‑1 (MQ=255)
                                                                                         tAGCTGTTCCG‑TCTTTACCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTgg          <  1:1874888/100‑2 (MQ=255)
                                                                                          tgCTCTTCCGATCTTTATTTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGc          <  1:2239085/99‑1 (MQ=255)
                                                                                          tgCTCTTCCGATCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGc          <  1:361176/99‑1 (MQ=255)
                                                                                          tgCTCTTCCGATCTTTATCTAAAATAATAATTTTGACATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAATTTCAACGTTTTTATCTGc          <  1:1492570/99‑1 (MQ=255)
                                                                                          tgCTCTTCCGATCTTTAACTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTgg          <  1:2742522/99‑2 (MQ=255)
                                                                                          tgCTCTTCCGATCTTTA‑CTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa         <  1:4877287/99‑1 (MQ=255)
                                                                                          tgCTCTTCCGATCTTTA‑CTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa         <  1:1004648/99‑1 (MQ=255)
                                                                                          tgCTCTTCCGATCTTTA‑CTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa         <  1:4436988/99‑1 (MQ=255)
                                                                                          tgCTCTTCCGATCTTTA‑CTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa         <  1:3115766/99‑1 (MQ=255)
                                                                                          tgCTCTTCCGATCTTGGTCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGc          <  1:3085126/99‑1 (MQ=255)
                                                                                          tgCTCTTCCGATCTGTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGc          <  1:5860292/99‑1 (MQ=255)
                                                                                          aGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa         <  1:838868/100‑1 (MQ=255)
                                                                                          aGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa         <  1:4280388/100‑1 (MQ=255)
                                                                                          aGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa         <  1:2029947/100‑1 (MQ=255)
                                                                                          aGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa         <  1:4002279/100‑1 (MQ=255)
                                                                                          aGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa         <  1:2080103/100‑1 (MQ=255)
                                                                                          aGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa         <  1:5496057/100‑1 (MQ=255)
                                                                                          aGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa         <  1:1103028/100‑1 (MQ=255)
                                                                                          aGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTACTGTTTCGGTTAAAATTTCAACGTTTTTATCTGCa         <  1:243904/100‑1 (MQ=255)
                                                                                           gCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCaa        <  1:4137970/100‑1 (MQ=255)
                                                                                           gCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCaa        <  1:1178289/100‑1 (MQ=255)
                                                                                           gCTCTTCCGATCTTTTTCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa         <  1:3243607/100‑1 (MQ=255)
                                                                                           gCTCTTCCGATCTTTGTCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa         <  1:1355094/100‑1 (MQ=255)
                                                                                           gCTCTTCCGATCTTTGTCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa         <  1:1062238/100‑1 (MQ=255)
                                                                                           gCTCTTCCGATCTTTGACTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa         <  1:3149029/100‑1 (MQ=255)
                                                                                           gCTCTTCCGATCTTTATGTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa         <  1:3488691/100‑1 (MQ=255)
                                                                                           gCTCTTCCGATCTTTATGTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa         <  1:2138669/100‑1 (MQ=255)
                                                                                           gCTCTTCCGATCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa         <  1:2997697/100‑1 (MQ=255)
                                                                                           gCTCTTCCGATCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa         <  1:4039068/100‑1 (MQ=255)
                                                                                           gCTCTTCCGATCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa         <  1:4183741/100‑1 (MQ=255)
                                                                                           gCTCTTCCGATCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa         <  1:1787246/100‑1 (MQ=255)
                                                                                           gCTCTTCCGATCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa         <  1:5333882/100‑1 (MQ=255)
                                                                                           gCTCTTCCGATCTTTATATAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa         <  1:5055432/100‑1 (MQ=255)
                                                                                           gCTCTTCCGATCTTTATACAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa         <  1:320930/100‑1 (MQ=255)
                                                                                           gCTCTTCCGATCTTTACCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGcg         <  1:715258/100‑2 (MQ=255)
                                                                                           gCTCTTCCGATCTTTACCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa         <  1:4535481/100‑1 (MQ=255)
                                                                                           gCTCTTCCGATCTTTACCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa         <  1:158831/100‑1 (MQ=255)
                                                                                           gCTCTTCCGATCTTT‑TCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCaa        <  1:2921545/100‑1 (MQ=255)
                                                                                           gCTCTTCCGATCTTCTTCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa         <  1:477070/100‑1 (MQ=255)
                                                                                           gCTCTTCCGATCTTCATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa         <  1:3354550/100‑1 (MQ=255)
                                                                                           gCTCTTCCGATCTTCACCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa         <  1:1266889/100‑1 (MQ=255)
                                                                                           gCTCTTCCGATCTGTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa         <  1:1430609/100‑1 (MQ=255)
                                                                                           gCTCTTCCGATCTGTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa         <  1:5937120/100‑1 (MQ=255)
                                                                                           gCTCTTCCGATCTATATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCa         <  1:4560336/100‑1 (MQ=255)
                                                                                            cTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCaag       <  1:1651043/100‑2 (MQ=255)
                                                                                            cTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCAAt       <  1:2179253/100‑1 (MQ=255)
                                                                                              gTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCAATGt     >  1:2812517/1‑100 (MQ=255)
                                                                                               ttCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCAATGtt    <  1:5966997/100‑1 (MQ=255)
                                                                                               ttCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCAATGtt    <  1:2357397/100‑1 (MQ=255)
                                                                                               ttCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCAATGtt    <  1:5659770/100‑1 (MQ=255)
                                                                                               ttCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCAATGtt    <  1:3814089/100‑1 (MQ=255)
                                                                                               ttCCG‑ACCTTTTCTAAAATAATAATTTTGCCATATATGTATTATAGATCTTTTTCAACTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTACAATGtt    <  1:4372907/100‑1 (MQ=255)
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CTTTTTATTCTCTATGTCGTTTTTTAGTTTTTGGAATCCTTCAGGAACATATCCATATCGAGATTTGGCATTTTCTAGATTAACATCTTTAGCTGTTCCG‑TCTTTATCTAAAATAATAATTTTGCCATATATGTATTTTAGTTCTTTTTCAATTTCTTTTTCGTTTAAAGTTTCAACGTTTTTATCTGCAATGTTAT  >  NC_007790/2357‑2553

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑