mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 164 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,480,272 | 0 | T | C | 72.5% | 70.5 / 33.4 | 51 | intergenic (+147750/+121528) | unknown/unknown | tRNA‑Met‑CAT/tRNA‑Val‑GAC |
| * | 1 | 1,476,241 | 0 | A | C | 57.4% | 28.4 / 66.9 | 54 | intergenic (+143719/+125559) | unknown/unknown | tRNA‑Met‑CAT/tRNA‑Val‑GAC |
| * | 1 | 1,528,021 | 0 | G | T | 53.3% | ‑3.6 / 21.3 | 15 | intergenic (+195499/+73779) | unknown/unknown | tRNA‑Met‑CAT/tRNA‑Val‑GAC |
| * | 1 | 1,763,573 | 0 | A | C | 48.5% | 73.3 / 26.7 | 66 | intergenic (‑39238/‑10704) | unknown/unknown | tRNA‑Arg‑CCG/tRNA‑Asn‑GTT |
| * | 1 | 1,942,428 | 0 | C | G | 44.8% | 21.9 / 12.7 | 30 | intergenic (+93052/‑57564) | unknown/unknown | tRNA‑Leu‑CAA/tRNA‑Asp‑GTC |
| * | 1 | 789,295 | 0 | G | A | 43.8% | 43.0 / 22.4 | 48 | intergenic (+54422/+32538) | unknown/unknown | tRNA‑Asn‑GTT/tRNA‑Thr‑GGT |
| * | 1 | 1,684,799 | 0 | A | C | 43.3% | 92.9 / 14.9 | 68 | intergenic (‑58674/‑14745) | unknown/unknown | SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/tRNA‑Ser‑GGA |
| * | 1 | 1,072,154 | 0 | A | C | 42.7% | 121.4 / 11.9 | 75 | intergenic (‑18952/‑10641) | unknown/unknown | tRNA‑Gly‑GCC/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA |
| * | 1 | 1,344,407 | 0 | T | G | 41.5% | 105.2 / 10.7 | 65 | intergenic (+11885/+257393) | unknown/unknown | tRNA‑Met‑CAT/tRNA‑Val‑GAC |
| * | 1 | 2,003,409 | 0 | T | A | 41.0% | 121.0 / 37.0 | 78 | intergenic (+3242/+53347) | unknown/unknown | tRNA‑Asp‑GTC/tRNA‑Lys‑CTT |
| * | 1 | 649,041 | 0 | T | G | 40.2% | 158.3 / 18.6 | 92 | intergenic (+158126/‑47667) | unknown/unknown | tRNA‑SeC(p)‑TCA/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA |
| * | 1 | 1,973,297 | 0 | C | T | 39.3% | 53.9 / 16.9 | 57 | intergenic (+123921/‑26695) | unknown/unknown | tRNA‑Leu‑CAA/tRNA‑Asp‑GTC |
| * | 1 | 1,451,124 | 0 | C | A | 38.9% | 44.6 / 25.6 | 36 | intergenic (+118602/+150676) | unknown/unknown | tRNA‑Met‑CAT/tRNA‑Val‑GAC |
| * | 1 | 1,240,348 | 0 | C | T | 38.8% | 100.2 / 27.2 | 81 | intergenic (‑129994/‑66121) | unknown/unknown | tRNA‑Gly‑GCC/tRNA‑Met‑CAT |
| * | 1 | 1,016,660 | 0 | C | G | 38.7% | 49.1 / 11.9 | 32 | intergenic (‑13587/+36253) | unknown/unknown | tRNA‑Lys‑TTT/tRNA‑Lys‑TTT |
| * | 1 | 959,680 | 0 | C | T | 38.3% | 84.9 / 31.8 | 81 | intergenic (+9473/+43318) | unknown/unknown | tRNA‑Leu‑CAG/tRNA‑Lys‑TTT |
| * | 1 | 2,138,106 | 0 | C | A | 37.7% | 105.9 / 27.3 | 69 | intergenic (‑18161/–) | unknown/– | tRNA‑Met‑CAT/– |
| * | 1 | 157,015 | 0 | G | T | 37.5% | 162.4 / 34.8 | 96 | intergenic (+20893/+106134) | unknown/unknown | tRNA‑Val‑TAC/LSU rRNA ## 23S rRNA, large subunit ribosomal RNA |
| * | 1 | 2,159,286 | 0 | A | C | 37.4% | 188.8 / 16.2 | 99 | intergenic (‑39341/–) | unknown/– | tRNA‑Met‑CAT/– |
| * | 1 | 2,021,854 | 0 | T | A | 36.7% | 47.2 / 11.8 | 30 | intergenic (+21687/+34902) | unknown/unknown | tRNA‑Asp‑GTC/tRNA‑Lys‑CTT |
| Marginal new junction evidence (lowest skew 10 of 64 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | 1 | = 264885 | NA (NA) | 12 (0.150) | 9/396 | 4.6 | NA | noncoding (1287/3023 nt) | unknown | LSU rRNA ## 23S rRNA, large subunit ribosomal RNA |
| ? | 1 | = 264990 | NA (NA) | noncoding (1182/3023 nt) | unknown | LSU rRNA ## 23S rRNA, large subunit ribosomal RNA | |||||
| * | ? | 1 | = 865705 | 89 (1.020) | 10 (0.120) | 9/406 | 4.7 | 10.9% | intergenic (‑14507/‑58012) | unknown/unknown | tRNA‑Met‑CAT/tRNA‑Leu‑GAG |
| ? | 1 | = 865951 | 80 (0.970) | intergenic (‑14753/‑57766) | unknown/unknown | tRNA‑Met‑CAT/tRNA‑Leu‑GAG | |||||
| * | ? | 1 | 732073 = | 79 (0.900) | 6 (0.070) | 5/410 | 6.1 | 6.1% | intergenic (+19055/‑2645) | unknown/unknown | tRNA‑Arg‑TCT/tRNA‑Phe‑GAA |
| ? | 1 | 732416 = | 111 (1.330) | intergenic (+19398/‑2302) | unknown/unknown | tRNA‑Arg‑TCT/tRNA‑Phe‑GAA | |||||
| * | ? | 1 | = 1480268 | 55 (0.630) | 6 (0.070) | 5/420 | 6.2 | 10.1% | intergenic (+147746/+121532) | unknown/unknown | tRNA‑Met‑CAT/tRNA‑Val‑GAC |
| ? | 1 | = 1654597 | NA (NA) | intergenic (‑28472/‑44947) | unknown/unknown | SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/tRNA‑Ser‑GGA | |||||
| * | ? | 1 | 1248961 = | 101 (1.150) | 6 (0.070) | 5/412 | 6.2 | 5.7% | intergenic (‑138607/‑57508) | unknown/unknown | tRNA‑Gly‑GCC/tRNA‑Met‑CAT |
| ? | 1 | 1249348 = | 100 (1.190) | intergenic (‑138994/‑57121) | unknown/unknown | tRNA‑Gly‑GCC/tRNA‑Met‑CAT | |||||
| * | ? | 1 | = 877165 | 115 (1.310) | 5 (0.060) | 5/418 | 6.2 | 4.4% | intergenic (‑25967/‑46552) | unknown/unknown | tRNA‑Met‑CAT/tRNA‑Leu‑GAG |
| ? | 1 | = 877299 | 106 (1.240) | intergenic (‑26101/‑46418) | unknown/unknown | tRNA‑Met‑CAT/tRNA‑Leu‑GAG | |||||
| * | ? | 1 | = 5604 | NA (NA) | 6 (0.070) | 5/420 | 6.2 | 100% | intergenic (–/+128340) | –/unknown | –/tRNA‑Ala‑GGC |
| ? | 1 | = 5824 | 0 (0.000) | intergenic (–/+128120) | –/unknown | –/tRNA‑Ala‑GGC | |||||
| * | ? | 1 | = 1246299 | 89 (1.020) | 5 (0.060) | 5/422 | 6.3 | 5.3% | intergenic (‑135945/‑60170) | unknown/unknown | tRNA‑Gly‑GCC/tRNA‑Met‑CAT |
| ? | 1 | = 1246551 | 92 (1.070) | intergenic (‑136197/‑59918) | unknown/unknown | tRNA‑Gly‑GCC/tRNA‑Met‑CAT | |||||
| * | ? | 1 | = 1356744 | 76 (0.870) | 4 (0.050) | 4/386 | 6.4 | 5.3% | intergenic (+24222/+245056) | unknown/unknown | tRNA‑Met‑CAT/tRNA‑Val‑GAC |
| ? | 1 | = 1356794 | 74 (0.940) | intergenic (+24272/+245006) | unknown/unknown | tRNA‑Met‑CAT/tRNA‑Val‑GAC | |||||
| * | ? | 1 | 1986707 = | 62 (0.710) | 7 (0.090) | 4/404 | 6.5 | 9.4% | intergenic (+137331/‑13285) | unknown/unknown | tRNA‑Leu‑CAA/tRNA‑Asp‑GTC |
| ? | 1 | 1986861 = | 76 (0.920) | intergenic (+137485/‑13131) | unknown/unknown | tRNA‑Leu‑CAA/tRNA‑Asp‑GTC | |||||