#=GENOME_DIFF	1.0
#=CREATED	12:27:06 20 Jan 2022
#=PROGRAM	breseq 0.35.4 
#=COMMAND	breseq -j 6 -r /data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/genomes/Aa23S.gbk /data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/fastq/ATCC_S10_L001_R1_001.fastq.gz -o /data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/breseq_results/ATCC_vs_gbk23S
#=REFSEQ	/data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/genomes/Aa23S.gbk
#=READSEQ	/data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/fastq/ATCC_S10_L001_R1_001.fastq.gz
#=CONVERTED-BASES	194754060
#=CONVERTED-READS	902159
#=INPUT-BASES	194778000
#=INPUT-READS	902843
#=MAPPED-BASES	190248762
#=MAPPED-READS	883426
SNP	1	718	1	4364	T
SNP	2	719	1	8516	C
SNP	3	720	1	8758	A
SNP	4	721	1	9813	C
SNP	5	722	1	11294	C
SNP	6	723	1	12908	T
SNP	7	724	1	17305	C
SNP	8	725	1	20737	A
SNP	9	734	1	50063	C
SNP	10	735	1	57608	G
SNP	11	736	1	58044	C
SNP	12	743	1	70840	T
SNP	13	744	1	77008	C
SNP	14	745	1	78956	T
DEL	15	1663,1681	1	79054	21	repeat_length=7	repeat_new_copies=2	repeat_ref_copies=5	repeat_seq=GAAGCCA
SNP	16	746	1	79481	C
SNP	17	747	1	85741	T
INS	18	748	1	87021	T	repeat_length=1	repeat_new_copies=9	repeat_ref_copies=8	repeat_seq=T
SNP	19	749	1	89988	A
SNP	20	750	1	96038	C
SNP	21	751	1	96296	C
SNP	22	752	1	111886	C
SNP	23	753	1	115059	A
SNP	24	754	1	124317	T
SNP	25	755	1	129390	T
DEL	26	756	1	135876	1	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=7	repeat_seq=G
SNP	27	757	1	135973	C
SNP	28	760	1	140427	T
SNP	29	761	1	147344	C
SNP	30	762	1	152675	T
SNP	31	766	1	157489	T
SNP	32	767	1	157752	A
SNP	33	770	1	165844	A
SNP	34	771	1	167796	G
SNP	35	772	1	182281	T
SNP	36	773	1	196666	T
SNP	37	774	1	200155	A
SNP	38	775	1	200373	T
INS	39	776	1	216880	A	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=A
SNP	40	778	1	218868	A
SNP	41	779	1	230736	A
SNP	42	780	1	230757	A
SNP	43	781	1	235239	C
SNP	44	782	1	239682	G
SNP	45	783	1	247216	A
SNP	46	790	1	260198	C
SNP	47	792	1	271028	T
SNP	48	793	1	273601	G
SNP	49	794	1	277256	T
INS	50	1688	1	278029	AAT
SNP	51	795	1	281215	T
SNP	52	798	1	284514	C
SNP	53	801	1	296225	G
SNP	54	802	1	298387	T
SNP	55	803	1	299927	C
SNP	56	807	1	303269	A
SNP	57	808	1	313272	C
SNP	58	809	1	325396	C
SNP	59	810	1	331304	T
SNP	60	811	1	336183	G
SNP	61	812	1	351587	T
SNP	62	813	1	354607	G
SNP	63	814	1	354711	G
SNP	64	815	1	359730	G
SNP	65	817	1	368019	T
SNP	66	824	1	389250	G
SNP	67	827	1	401694	A
SNP	68	828	1	405393	G
SNP	69	829	1	406867	C
SNP	70	830	1	410231	G
SNP	71	831	1	411710	T
SNP	72	832	1	415649	C
SNP	73	839	1	428456	A
SNP	74	840	1	429053	C
SNP	75	841	1	435656	T
SNP	76	842	1	438200	A
SNP	77	843	1	438425	A
SNP	78	844	1	440006	G
SNP	79	846	1	453641	T
SNP	80	847	1	455998	T
SNP	81	848	1	459724	T
SNP	82	850	1	468967	C
INS	83	851	1	471997	G
SNP	84	853	1	477303	T
SNP	85	860	1	484203	G
SNP	86	861	1	488294	G
SNP	87	862	1	490790	A
SNP	88	865	1	493704	C
SNP	89	866	1	494591	T
SNP	90	867	1	496502	A
SNP	91	868	1	501342	G
SNP	92	869	1	506117	C
SNP	93	871	1	508530	A
SNP	94	872	1	510039	T
SNP	95	873	1	510667	G
INS	96	1694	1	538967	TTATT	repeat_length=5	repeat_new_copies=2	repeat_ref_copies=1	repeat_seq=TTATT
SNP	97	877	1	544418	T
SNP	98	881	1	549790	G
SNP	99	882	1	562377	T
SNP	100	883	1	564646	C
SNP	101	884	1	567551	G
SNP	102	885	1	577273	T
SNP	103	890	1	580218	C
SNP	104	892	1	584015	G
SNP	105	893	1	587904	G
SNP	106	896	1	601066	G
SNP	107	897	1	613468	T
SNP	108	898	1	618437	A
SNP	109	900	1	630948	C
SNP	110	901	1	634761	C
SNP	111	902	1	640919	T
SNP	112	903	1	641782	T
SNP	113	904	1	643124	C
SNP	114	908	1	660785	C
SNP	115	909	1	661686	C
INS	116	1700	1	662227	CAAA
SNP	117	910	1	666029	C
SNP	118	911	1	684206	T
SNP	119	914	1	687069	C
SNP	120	915	1	688989	G
SUB	121	916,917	1	689431	2	GT
SNP	122	918	1	689437	T
SNP	123	919	1	689498	A
SNP	124	920	1	691498	T
DEL	125	1666,1702	1	702780	5	repeat_length=5	repeat_new_copies=1	repeat_ref_copies=2	repeat_seq=ATATA
SNP	126	921	1	704031	C
SNP	127	922	1	704184	G
SNP	128	923	1	709897	A
SNP	129	924	1	716452	G
SNP	130	925	1	716971	C
SNP	131	926	1	718331	C
SNP	132	927	1	721213	A
SNP	133	928	1	725907	C
SNP	134	929	1	726416	A
SNP	135	930	1	731551	C
SNP	136	932	1	738002	G
SNP	137	933	1	748567	A
SNP	138	935	1	755937	C
SNP	139	936	1	762071	A
SNP	140	937	1	765866	T
SNP	141	938	1	768021	C
SNP	142	939	1	769065	C
SNP	143	940	1	769914	T
SNP	144	941	1	771267	A
SNP	145	942	1	772110	C
SNP	146	943	1	775838	A
SNP	147	944	1	775868	G
SNP	148	945	1	775871	G
SNP	149	946	1	775877	T
SNP	150	947	1	775886	C
SNP	151	948	1	775916	C
SNP	152	949	1	775940	C
SNP	153	950	1	775952	T
SNP	154	951	1	775955	T
SNP	155	952	1	775967	G
SNP	156	953	1	775970	T
SNP	157	954	1	775982	G
SNP	158	955	1	775988	T
SNP	159	956	1	775992	C
SNP	160	957	1	775997	A
SNP	161	958	1	776003	A
SNP	162	959	1	776006	G
SNP	163	960	1	776016	T
SNP	164	961	1	776018	A
SNP	165	962	1	776021	G
SNP	166	963	1	776051	C
SNP	167	964	1	776191	G
SNP	168	965	1	776222	T
SNP	169	966	1	776225	T
SNP	170	967	1	776243	T
SNP	171	968	1	776247	C
SNP	172	969	1	776258	C
SNP	173	970	1	776288	T
SNP	174	971	1	776297	T
SNP	175	972	1	776300	G
SNP	176	973	1	776309	A
SNP	177	974	1	776311	G
SUB	178	975,976	1	776316	2	TG
SNP	179	977	1	776360	C
SNP	180	978	1	776650	C
SNP	181	979	1	776662	G
SNP	182	980	1	776665	C
SNP	183	981	1	776668	T
SNP	184	982	1	776680	G
SNP	185	983	1	776686	T
SUB	186	984,985	1	776692	2	AC
SNP	187	986	1	776698	A
SNP	188	987	1	776701	G
SNP	189	988	1	776707	A
SNP	190	989	1	776710	G
SNP	191	990	1	776713	A
SNP	192	991	1	776716	T
SNP	193	992	1	776720	A
SUB	194	993,994	1	776722	2	CG
SNP	195	995	1	776734	T
SNP	196	996	1	776737	T
SNP	197	997	1	776740	A
SUB	198	998,999	1	776746	2	GC
SNP	199	1000	1	776749	G
SUB	200	1001,1002	1	776751	2	CA
SNP	201	1003	1	776756	G
SNP	202	1004	1	776764	T
SNP	203	1005	1	776767	G
SNP	204	1006	1	776776	G
SUB	205	1007,1008	1	776779	2	CA
SNP	206	1009	1	776794	C
SNP	207	1010	1	776800	T
SNP	208	1011	1	776803	C
SNP	209	1012	1	776815	T
SNP	210	1013	1	776818	A
SNP	211	1014	1	776830	A
SNP	212	1015	1	776839	G
SNP	213	1016	1	776842	A
SNP	214	1017	1	776857	G
SNP	215	1018	1	776869	T
SNP	216	1019	1	776878	G
SUB	217	1020,1021	1	776887	2	GC
SNP	218	1022	1	776914	G
SNP	219	1023	1	776917	G
SNP	220	1024	1	776947	T
SNP	221	1025	1	777007	G
SNP	222	1026	1	777019	A
SNP	223	1027	1	777064	C
SNP	224	1028	1	777072	T
SNP	225	1029	1	777079	C
SNP	226	1030	1	777082	T
SNP	227	1031	1	777092	T
SNP	228	1032	1	777097	C
SNP	229	1033	1	777103	T
SNP	230	1034	1	777106	C
SNP	231	1035	1	777115	T
SNP	232	1036	1	777121	T
SNP	233	1037	1	777133	T
SNP	234	1038	1	777136	G
SNP	235	1039	1	777157	A
SNP	236	1040	1	777163	T
SNP	237	1041	1	777169	C
SNP	238	1042	1	777199	G
SNP	239	1043	1	777205	T
SNP	240	1044	1	777238	T
SNP	241	1045	1	777259	C
SNP	242	1046	1	777274	C
SNP	243	1047	1	777279	T
SNP	244	1048	1	777317	T
SNP	245	1049	1	777352	T
SNP	246	1050	1	777355	A
SUB	247	1051,1052	1	777359	2	AA
SNP	248	1053	1	777391	G
SUB	249	1054,1055	1	777484	2	AA
SNP	250	1056	1	777511	A
SNP	251	1057	1	777520	G
SNP	252	1058	1	777529	C
SNP	253	1059	1	777535	T
SNP	254	1060	1	777559	G
SNP	255	1061	1	777565	G
SNP	256	1062	1	777571	C
SNP	257	1063	1	777601	T
SNP	258	1064	1	777703	A
SNP	259	1065	1	777712	C
SNP	260	1066	1	777724	A
SNP	261	1067	1	777739	A
SNP	262	1068	1	777775	T
SNP	263	1069	1	777805	T
SNP	264	1070	1	777823	A
SNP	265	1071	1	777826	A
SNP	266	1072	1	777889	C
SNP	267	1073	1	777892	A
SNP	268	1074	1	777895	G
SUB	269	1075,1076	1	777898	2	TA
SNP	270	1077	1	777901	A
SNP	271	1078	1	777910	G
SNP	272	1079	1	777913	A
SNP	273	1080	1	777916	G
SNP	274	1081	1	777919	T
SNP	275	1082	1	777922	C
SNP	276	1083	1	777928	T
SNP	277	1084	1	777940	A
SNP	278	1085	1	777947	C
SNP	279	1086	1	777949	C
SNP	280	1087	1	777958	A
SNP	281	1088	1	777961	T
SNP	282	1089	1	777970	G
SNP	283	1090	1	777973	A
SNP	284	1091	1	777977	T
SNP	285	1092	1	777982	T
SNP	286	1093	1	777985	A
SNP	287	1094	1	777997	A
SUB	288	1095,1096	1	778002	2	AA
SNP	289	1097	1	778007	T
SNP	290	1098	1	778018	T
SNP	291	1099	1	778030	C
SNP	292	1100	1	778036	G
SNP	293	1101	1	778039	A
SNP	294	1102	1	778041	T
SNP	295	1103	1	778048	A
DEL	296	1104,1105,1106,1107,1108,1109,1110,1111,1112,1113,1114,1115	1	778055	12
SNP	297	1116	1	778109	A
SNP	298	1117	1	778125	T
SUB	299	1118,1119	1	778132	2	AC
SNP	300	1120	1	778137	T
SNP	301	1121	1	778141	C
SNP	302	1122	1	778158	G
SNP	303	1123	1	778168	A
SNP	304	1124	1	778171	A
SNP	305	1125	1	778180	G
SNP	306	1126	1	778187	G
SNP	307	1127	1	778190	A
SNP	308	1128	1	778198	C
SNP	309	1129	1	778201	A
SNP	310	1130	1	778203	T
SNP	311	1131	1	778208	C
SNP	312	1132	1	778224	T
SNP	313	1133	1	778447	C
SNP	314	1134	1	778453	C
SNP	315	1135	1	778459	C
SNP	316	1136	1	778463	C
SNP	317	1137	1	778465	C
SUB	318	1138,1139	1	778467	2	CA
SNP	319	1140	1	778475	T
SNP	320	1141	1	778477	G
SNP	321	1142	1	778492	T
SNP	322	1143	1	778498	T
SNP	323	1144	1	778507	A
SNP	324	1145	1	778509	G
SNP	325	1146	1	778541	C
SNP	326	1147	1	778543	C
SNP	327	1148	1	778547	G
SNP	328	1149	1	778550	A
SNP	329	1150	1	778552	G
SNP	330	1151	1	778559	C
SUB	331	1152,1153	1	778577	2	GG
SNP	332	1154	1	778583	T
SNP	333	1155	1	778589	T
SNP	334	1156	1	778592	A
SNP	335	1157	1	778613	G
SNP	336	1158	1	778622	T
SNP	337	1159	1	778751	T
SNP	338	1160	1	778761	T
SNP	339	1161	1	778763	G
SNP	340	1162	1	778766	T
SUB	341	1163,1164	1	778769	2	AA
SNP	342	1165	1	778773	T
SUB	343	1166,1167	1	778777	2	AC
SNP	344	1168	1	778781	G
SNP	345	1169	1	778784	C
SUB	346	1170,1171	1	778787	2	TA
SNP	347	1172	1	778790	T
SNP	348	1173	1	778793	T
SNP	349	1174	1	778796	A
SNP	350	1175	1	778799	A
SNP	351	1176	1	778805	G
SUB	352	1177,1178	1	778807	2	GC
SNP	353	1179	1	778829	T
SNP	354	1180	1	778837	G
SNP	355	1181	1	778844	G
SNP	356	1182	1	778863	T
SNP	357	1183	1	778865	T
SUB	358	1184,1185	1	778867	2	CT
SNP	359	1186	1	778872	G
SUB	360	1187,1188,1189	1	778888	3	ATT
SNP	361	1190	1	778898	A
INS	362	1191	1	778912	T	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=5	repeat_seq=T
SNP	363	1192	1	778925	C
SNP	364	1193	1	778929	C
SNP	365	1194	1	778948	C
SNP	366	1195	1	778960	T
SNP	367	1196	1	778985	T
SNP	368	1197	1	779020	C
SNP	369	1198	1	779110	A
SNP	370	1199	1	779121	T
SNP	371	1200	1	779126	T
SNP	372	1201	1	779152	G
SNP	373	1202	1	779173	C
SNP	374	1203	1	779176	C
SNP	375	1204	1	779189	G
SNP	376	1205	1	779197	C
SNP	377	1206	1	779211	G
SNP	378	1207	1	779224	T
SNP	379	1208	1	779235	C
SNP	380	1209	1	779250	C
SNP	381	1210	1	779262	A
SNP	382	1211	1	779268	A
SNP	383	1212	1	779291	A
SNP	384	1213	1	779295	A
SNP	385	1214	1	779304	C
SUB	386	1215,1216	1	779307	2	TA
SNP	387	1217	1	779322	T
SNP	388	1218	1	779331	C
SNP	389	1219	1	779334	C
SNP	390	1220	1	779340	A
SNP	391	1221	1	779346	G
SNP	392	1222	1	779352	G
SNP	393	1223	1	779355	G
SUB	394	1224,1225	1	779359	2	G
INS	395	1226	1	779365	T
SUB	396	1227,1228	1	779367	2	CA
SNP	397	1229	1	779375	G
SNP	398	1230	1	779472	G
SNP	399	1231	1	779475	T
SNP	400	1232	1	779483	C
SNP	401	1233	1	779499	C
SNP	402	1234	1	779539	C
SUB	403	1235,1236	1	779605	2	TG
SNP	404	1237	1	779608	C
SNP	405	1238	1	779617	T
SNP	406	1267	1	779828	C
SNP	407	1268	1	779831	T
SNP	408	1269	1	779840	C
SNP	409	1270	1	779846	T
SNP	410	1271	1	779849	T
SNP	411	1272	1	779852	C
SNP	412	1273	1	779858	T
SNP	413	1274	1	779861	C
SNP	414	1275	1	779864	C
SUB	415	1276,1277	1	779867	2	CC
SNP	416	1278	1	779873	A
SNP	417	1279	1	779876	T
SUB	418	1280,1281	1	779881	2	GC
SNP	419	1282	1	779888	T
SNP	420	1283	1	779891	C
SNP	421	1284	1	779903	T
SNP	422	1285	1	779912	A
SNP	423	1286	1	779930	G
SNP	424	1287	1	779942	C
SNP	425	1288	1	779954	C
SNP	426	1289	1	779987	T
SNP	427	1290	1	780003	A
SNP	428	1291	1	780005	G
SNP	429	1292	1	780007	T
SNP	430	1293	1	780020	G
SNP	431	1294	1	780035	T
SNP	432	1295	1	780044	A
SNP	433	1296	1	780047	T
SNP	434	1297	1	780050	C
SNP	435	1298	1	780053	C
SNP	436	1299	1	780104	C
SNP	437	1300	1	780149	G
SNP	438	1301	1	780152	A
SNP	439	1302	1	780197	G
SNP	440	1303	1	780200	T
SNP	441	1304	1	780218	A
SUB	442	1305,1306	1	780224	2	AC
SNP	443	1307	1	780227	A
SNP	444	1308	1	780230	C
SNP	445	1309	1	780239	A
SNP	446	1310	1	780245	T
SUB	447	1311,1312	1	780252	2	GA
SNP	448	1313	1	780260	T
SNP	449	1314	1	780263	A
SNP	450	1315	1	780266	T
SNP	451	1316	1	780278	T
SNP	452	1317	1	780288	G
SNP	453	1318	1	780290	A
SNP	454	1319	1	780293	C
SUB	455	1320,1321	1	780299	2	AA
SNP	456	1322	1	780305	T
SNP	457	1323	1	780320	C
SNP	458	1324	1	780326	A
SNP	459	1325	1	780332	C
SNP	460	1326	1	780338	C
SNP	461	1327	1	780412	T
SNP	462	1328	1	780447	C
SNP	463	1329	1	780492	A
INS	464	1330	1	784498	A	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=A
SNP	465	1333	1	794825	A
SNP	466	1335	1	798656	C
SNP	467	1336	1	805432	C
SNP	468	1337	1	815191	C
SNP	469	1339	1	827757	G
SNP	470	1340	1	831599	G
DEL	471	1341	1	833517	1	repeat_length=1	repeat_new_copies=9	repeat_ref_copies=10	repeat_seq=A
SNP	472	1342	1	840690	G
SNP	473	1343	1	843106	C
SNP	474	1344	1	846201	C
SUB	475	1346,1347	1	863092	2	A
SNP	476	1348	1	866340	T
SNP	477	1349	1	867145	T
SNP	478	1350	1	870317	T
SNP	479	1351	1	873069	C
SNP	480	1352	1	885664	A
SNP	481	1353	1	886379	T
SNP	482	1354	1	886858	C
SNP	483	1357	1	896119	G
SNP	484	1358	1	896202	G
SNP	485	1359	1	904840	C
SNP	486	1360	1	906191	G
SNP	487	1363	1	911825	G
SNP	488	1364	1	915845	C
SNP	489	1365	1	920875	G
SNP	490	1366	1	933211	T
SNP	491	1367	1	936810	A
SNP	492	1368	1	937623	A
SNP	493	1369	1	944444	A
SNP	494	1370	1	944580	T
SNP	495	1371	1	947202	C
SNP	496	1372	1	959254	C
SNP	497	1374	1	968385	T
INS	498	1712	1	970405	GTACTTCGT
SNP	499	1375	1	975299	T
SNP	500	1376	1	983524	G
SNP	501	1377	1	997376	A
SNP	502	1378	1	1000237	A
SNP	503	1379	1	1000300	T
SNP	504	1380	1	1012170	C
SNP	505	1381	1	1016450	C
SNP	506	1383	1	1017941	C
SNP	507	1384	1	1024683	T
SNP	508	1385	1	1026971	C
SNP	509	1386	1	1030583	A
SNP	510	1387	1	1031104	A
SNP	511	1388	1	1038335	A
SNP	512	1389	1	1038504	T
SNP	513	1390	1	1039204	C
SNP	514	1391	1	1040377	C
DEL	515	1668,1714	1	1046829	36
DEL	516	1392	1	1051709	1
SNP	517	1393	1	1056036	A
SNP	518	1394	1	1061570	A
SNP	519	1395	1	1061948	G
SNP	520	1396	1	1069137	C
SNP	521	1397	1	1071434	C
SNP	522	1399	1	1080778	C
SNP	523	1400	1	1098586	G
SNP	524	1401	1	1099684	A
SNP	525	1402	1	1099980	T
SNP	526	1403	1	1114803	C
SNP	527	1405	1	1115682	C
SNP	528	1406	1	1119322	G
SNP	529	1407	1	1123184	G
SNP	530	1408	1	1132698	T
SNP	531	1409	1	1133930	C
SNP	532	1410	1	1134432	T
SNP	533	1411	1	1141129	C
SNP	534	1412	1	1147721	C
SNP	535	1413	1	1152112	A
SNP	536	1414	1	1152479	T
SNP	537	1415	1	1154838	C
SNP	538	1416	1	1155844	T
SNP	539	1419	1	1171632	C
SNP	540	1420	1	1176334	A
SNP	541	1421	1	1190766	T
SNP	542	1422	1	1197176	G
SNP	543	1423	1	1197718	G
SNP	544	1424	1	1200012	C
SNP	545	1425	1	1200593	C
SNP	546	1426	1	1203405	C
SNP	547	1427	1	1209156	A
SNP	548	1428	1	1215820	A
SNP	549	1429	1	1216282	T
SNP	550	1430	1	1218077	T
SNP	551	1434	1	1243812	C
SNP	552	1435	1	1243994	G
SNP	553	1436	1	1253880	A
SNP	554	1437	1	1273690	T
SNP	555	1438	1	1278262	G
SNP	556	1439	1	1280799	G
SNP	557	1440	1	1282973	G
DEL	558	1670,1722	1	1289254	68
SNP	559	1442	1	1291150	A
SNP	560	1443	1	1292036	C
SNP	561	1444	1	1302158	T
SNP	562	1445	1	1303227	C
SNP	563	1446	1	1317340	C
SNP	564	1447	1	1326118	C
SNP	565	1448	1	1326440	C
SNP	566	1449	1	1326734	C
SNP	567	1450	1	1329525	T
DEL	568	1726	1	1337311	15	repeat_length=5	repeat_new_copies=5	repeat_ref_copies=8	repeat_seq=CACCT
SNP	569	1451	1	1340408	C
SNP	570	1452	1	1342768	A
SNP	571	1454	1	1345815	T
SNP	572	1456	1	1356174	C
SNP	573	1457	1	1357196	T
SNP	574	1458	1	1365243	A
SNP	575	1459	1	1367647	G
SNP	576	1460	1	1367650	A
SNP	577	1462	1	1380617	C
SNP	578	1463	1	1387623	C
SNP	579	1464	1	1391706	A
INS	580	1465,1466	1	1395308	CC	repeat_length=1	repeat_new_copies=9	repeat_ref_copies=7	repeat_seq=C
SNP	581	1467	1	1399167	C
SNP	582	1468	1	1402469	C
SNP	583	1469	1	1404438	C
SNP	584	1470	1	1418722	C
SNP	585	1471	1	1422086	G
SNP	586	1474	1	1456521	T
SNP	587	1475	1	1457147	A
SNP	588	1476	1	1462127	C
SNP	589	1477	1	1467185	C
SNP	590	1480	1	1478211	T
SNP	591	1482	1	1480969	A
SNP	592	1486	1	1496693	A
SNP	593	1487	1	1501068	G
SNP	594	1488	1	1502076	T
SNP	595	1490	1	1504443	A
SNP	596	1491	1	1506303	C
SNP	597	1492	1	1515264	G
SNP	598	1493	1	1515702	C
SNP	599	1494	1	1519868	G
SNP	600	1496	1	1532950	C
SNP	601	1502	1	1536383	G
SNP	602	1503	1	1538359	T
SNP	603	1504	1	1540261	A
SNP	604	1505	1	1541312	A
INS	605	1506	1	1544171	C	repeat_length=1	repeat_new_copies=9	repeat_ref_copies=8	repeat_seq=C
SNP	606	1507	1	1545859	T
SNP	607	1508	1	1546498	C
SNP	608	1509	1	1547502	A
SNP	609	1511	1	1558877	T
SNP	610	1512	1	1566749	G
SNP	611	1513	1	1570933	C
SNP	612	1514	1	1575194	T
SNP	613	1515	1	1577630	C
SNP	614	1518	1	1582123	C
SNP	615	1519	1	1583272	C
DEL	616	1520,1521	1	1585795	2	repeat_length=2	repeat_new_copies=4	repeat_ref_copies=5	repeat_seq=TA
SNP	617	1523	1	1587719	A
SNP	618	1524	1	1593826	T
SNP	619	1525	1	1597663	G
SNP	620	1526	1	1597756	G
SNP	621	1528	1	1609883	T
SNP	622	1529	1	1614088	G
SNP	623	1530	1	1626302	C
SNP	624	1531	1	1633397	G
SNP	625	1532	1	1637012	G
SNP	626	1533	1	1643279	G
SNP	627	1534	1	1644350	G
SNP	628	1536	1	1652525	A
SNP	629	1537	1	1659070	T
SNP	630	1538	1	1663713	T
SNP	631	1540	1	1668467	T
SNP	632	1543	1	1685329	C
SNP	633	1544	1	1693043	A
SNP	634	1545	1	1697724	T
SNP	635	1546	1	1704979	T
SNP	636	1547	1	1705447	C
SNP	637	1548	1	1708642	C
SNP	638	1550	1	1712279	G
SNP	639	1551	1	1729053	C
SNP	640	1554	1	1749134	C
SNP	641	1557	1	1759086	T
SNP	642	1558	1	1759872	T
SNP	643	1559	1	1762700	T
SNP	644	1562	1	1763645	C
SNP	645	1563	1	1764488	G
SNP	646	1564	1	1766217	G
SNP	647	1565	1	1766520	G
SNP	648	1566	1	1767078	G
SNP	649	1568	1	1768588	T
SNP	650	1569	1	1774723	A
SNP	651	1570	1	1779808	T
SNP	652	1571	1	1815215	A
DEL	653	1572,1573	1	1815392	2	repeat_length=1	repeat_new_copies=5	repeat_ref_copies=7	repeat_seq=T
SNP	654	1574	1	1827628	C
SNP	655	1575	1	1830564	C
SNP	656	1576	1	1842463	G
SNP	657	1577	1	1849791	A
SNP	658	1578	1	1850622	A
SNP	659	1579	1	1851912	C
SNP	660	1580	1	1853043	C
SNP	661	1581	1	1857273	T
SNP	662	1582	1	1868617	A
SNP	663	1589	1	1877438	G
SNP	664	1590	1	1909419	A
SNP	665	1591	1	1909605	T
SNP	666	1592	1	1911434	C
SNP	667	1593	1	1912984	C
DEL	668	1676,1748	1	1918116	64	repeat_length=4	repeat_new_copies=12	repeat_ref_copies=28	repeat_seq=TTTG
SNP	669	1594	1	1926573	C
SNP	670	1595	1	1930537	A
SNP	671	1596	1	1940044	G
SNP	672	1598	1	1944981	T
SNP	673	1599	1	1955767	C
SNP	674	1600	1	1958744	T
SNP	675	1601	1	1963318	G
SNP	676	1602	1	1966890	G
SNP	677	1603	1	1967333	G
SNP	678	1604	1	1972062	T
SNP	679	1611	1	1986148	G
SNP	680	1612	1	1992825	C
SNP	681	1613	1	1993670	A
DEL	682	1615	1	1999946	1	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=9	repeat_seq=A
SNP	683	1620	1	2009509	A
SNP	684	1621	1	2017066	A
SNP	685	1623	1	2028272	G
SNP	686	1624	1	2030365	T
SNP	687	1625	1	2031329	T
SNP	688	1626	1	2037376	G
SNP	689	1627	1	2038522	A
SNP	690	1628	1	2043493	T
SNP	691	1629	1	2047863	A
SNP	692	1631	1	2053948	G
SNP	693	1632	1	2060274	A
SNP	694	1633	1	2062767	G
SNP	695	1634	1	2066704	T
SNP	696	1635	1	2069240	C
INS	697	1753	1	2081550	AGTCC
INS	698	1754	1	2096893	CGCCC	repeat_length=5	repeat_new_copies=3	repeat_ref_copies=2	repeat_seq=CGCCC
SNP	699	1638	1	2098397	C
SNP	700	1639	1	2099495	C
SNP	701	1641	1	2101350	G
SNP	702	1642	1	2103174	A
SNP	703	1643	1	2104655	A
SNP	704	1644	1	2110170	A
SNP	705	1645	1	2110839	G
SNP	706	1646	1	2115149	G
SNP	707	1647	1	2118441	T
SNP	708	1648	1	2119381	A
SNP	709	1649	1	2124700	G
SNP	710	1652	1	2141158	T
SNP	711	1653	1	2142945	C
SNP	712	1654	1	2143884	G
SNP	713	1655	1	2149183	C
INS	714	1756	1	2162035	ACC
SNP	715	1660	1	2162660	G
SNP	716	1661	1	2162705	A
SNP	717	1662	1	2168043	C
RA	718	.	1	4364	0	C	T	consensus_score=161.6	frequency=1	major_base=T	major_cov=26/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/23
RA	719	.	1	8516	0	A	C	bias_e_value=1688850	bias_p_value=0.777125	consensus_score=343.7	fisher_strand_p_value=0.411765	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=41/60	major_frequency=9.902e-01	minor_base=G	minor_cov=1/0	new_cov=41/60	polymorphism_frequency=9.902e-01	polymorphism_score=-6.5	prediction=consensus	ref_cov=0/0	total_cov=42/60
RA	720	.	1	8758	0	T	A	consensus_score=293.1	frequency=1	major_base=A	major_cov=30/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/55
RA	721	.	1	9813	0	T	C	consensus_score=357.0	frequency=1	major_base=C	major_cov=43/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/59
RA	722	.	1	11294	0	T	C	consensus_score=243.7	frequency=1	major_base=C	major_cov=35/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/38
RA	723	.	1	12908	0	C	T	bias_e_value=2173200	bias_p_value=1	consensus_score=290.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=44/40	major_frequency=9.882e-01	minor_base=C	minor_cov=1/0	new_cov=44/40	polymorphism_frequency=9.882e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=45/40
RA	724	.	1	17305	0	G	C	consensus_score=376.6	frequency=1	major_base=C	major_cov=57/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/53
RA	725	.	1	20737	0	G	A	consensus_score=258.1	frequency=1	major_base=A	major_cov=36/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/39
RA	726	.	1	23122	0	T	G	bias_e_value=1.58139e-05	bias_p_value=7.27679e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=157.7	fisher_strand_p_value=2.42163e-13	frequency=3.605e-01	ks_quality_p_value=1	major_base=T	major_cov=13/42	major_frequency=6.395e-01	minor_base=G	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=3.605e-01	polymorphism_score=12.6	prediction=polymorphism	ref_cov=13/42	total_cov=45/42
RA	727	.	1	48158	0	T	G	bias_e_value=4.23819e-10	bias_p_value=1.9502e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=206.0	fisher_strand_p_value=4.77007e-18	frequency=3.458e-01	ks_quality_p_value=1	major_base=T	major_cov=13/57	major_frequency=6.542e-01	minor_base=G	minor_cov=37/0	new_cov=37/0	polymorphism_frequency=3.458e-01	polymorphism_score=23.7	prediction=polymorphism	ref_cov=13/57	total_cov=53/57
RA	728	.	1	48382	0	A	C	bias_e_value=28.8403	bias_p_value=1.32709e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=174.2	fisher_strand_p_value=8.88662e-07	frequency=2.286e-01	ks_quality_p_value=1	major_base=A	major_cov=36/18	major_frequency=7.714e-01	minor_base=C	minor_cov=0/16	new_cov=0/16	polymorphism_frequency=2.286e-01	polymorphism_score=12.1	prediction=polymorphism	ref_cov=36/18	total_cov=36/34
RA	729	.	1	48411	0	T	C	bias_e_value=0.00575345	bias_p_value=2.64745e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=96.7	fisher_strand_p_value=1.10658e-10	frequency=3.333e-01	ks_quality_p_value=1	major_base=T	major_cov=35/9	major_frequency=6.667e-01	minor_base=C	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=3.333e-01	polymorphism_score=24.1	prediction=polymorphism	ref_cov=35/9	total_cov=35/31
RA	730	.	1	48417	0	A	C	bias_e_value=0.0677589	bias_p_value=3.11793e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=142.2	fisher_strand_p_value=1.46078e-09	frequency=2.985e-01	ks_quality_p_value=1	major_base=A	major_cov=36/11	major_frequency=7.015e-01	minor_base=C	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.985e-01	polymorphism_score=11.6	prediction=polymorphism	ref_cov=36/11	total_cov=36/32
RA	731	.	1	48421	0	G	T	bias_e_value=1.85115	bias_p_value=8.51809e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=133.7	fisher_strand_p_value=4.7698e-08	frequency=2.581e-01	ks_quality_p_value=1	major_base=G	major_cov=35/11	major_frequency=7.419e-01	minor_base=T	minor_cov=0/16	new_cov=0/16	polymorphism_frequency=2.581e-01	polymorphism_score=12.8	prediction=polymorphism	ref_cov=35/11	total_cov=35/27
RA	732	.	1	48431	0	C	A	bias_e_value=0.0159797	bias_p_value=7.35309e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=126.1	fisher_strand_p_value=3.21694e-10	frequency=3.167e-01	ks_quality_p_value=1	major_base=C	major_cov=34/7	major_frequency=6.833e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=3.167e-01	polymorphism_score=13.3	prediction=polymorphism	ref_cov=34/7	total_cov=34/26
RA	733	.	1	48453	0	G	C	bias_e_value=0.102768	bias_p_value=4.72887e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=129.4	fisher_strand_p_value=2.26185e-09	frequency=2.836e-01	ks_quality_p_value=1	major_base=G	major_cov=37/11	major_frequency=7.164e-01	minor_base=C	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.836e-01	polymorphism_score=10.4	prediction=polymorphism	ref_cov=37/11	total_cov=37/30
RA	734	.	1	50063	0	T	C	consensus_score=348.0	frequency=1	major_base=C	major_cov=47/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/55
RA	735	.	1	57608	0	A	G	consensus_score=399.7	frequency=1	major_base=G	major_cov=59/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/58
RA	736	.	1	58044	0	T	C	consensus_score=273.2	frequency=1	major_base=C	major_cov=47/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/35
RA	737	.	1	58579	0	C	A	bias_e_value=8.73035e-08	bias_p_value=4.01728e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=221.8	fisher_strand_p_value=1.13442e-15	frequency=3.131e-01	ks_quality_p_value=1	major_base=C	major_cov=55/13	major_frequency=6.869e-01	minor_base=A	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=3.131e-01	polymorphism_score=31.2	prediction=polymorphism	ref_cov=55/13	total_cov=55/44
RA	738	.	1	58590	0	T	C	bias_e_value=4.31869e-05	bias_p_value=1.98725e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=213.7	fisher_strand_p_value=6.85039e-13	frequency=2.667e-01	ks_quality_p_value=1	major_base=T	major_cov=57/20	major_frequency=7.333e-01	minor_base=C	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.667e-01	polymorphism_score=12.9	prediction=polymorphism	ref_cov=57/20	total_cov=57/48
RA	739	.	1	58620	0	G	A	bias_e_value=1.24881e-10	bias_p_value=5.74641e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=202.7	fisher_strand_p_value=1.36377e-18	frequency=3.091e-01	ks_quality_p_value=1	major_base=G	major_cov=64/12	major_frequency=6.909e-01	minor_base=A	minor_cov=0/34	new_cov=0/34	polymorphism_frequency=3.091e-01	polymorphism_score=25.9	prediction=polymorphism	ref_cov=64/12	total_cov=64/46
RA	740	.	1	58631	0	G	T	bias_e_value=3.51888e-06	bias_p_value=1.61921e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=272.4	fisher_strand_p_value=5.12372e-14	frequency=2.586e-01	ks_quality_p_value=1	major_base=G	major_cov=64/22	major_frequency=7.414e-01	minor_base=T	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=2.586e-01	polymorphism_score=23.6	prediction=polymorphism	ref_cov=64/22	total_cov=64/52
RA	741	.	1	58641	0	G	A	bias_e_value=1.09233e-06	bias_p_value=5.02638e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=208.7	fisher_strand_p_value=1.53198e-14	frequency=2.435e-01	ks_quality_p_value=1	major_base=G	major_cov=68/19	major_frequency=7.565e-01	minor_base=A	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.435e-01	polymorphism_score=18.9	prediction=polymorphism	ref_cov=68/19	total_cov=68/52
RA	742	.	1	58644	0	A	C	bias_e_value=3.89647e-07	bias_p_value=1.79296e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=260.9	fisher_strand_p_value=5.29329e-15	frequency=2.672e-01	ks_quality_p_value=1	major_base=A	major_cov=65/20	major_frequency=7.328e-01	minor_base=C	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=2.672e-01	polymorphism_score=17.7	prediction=polymorphism	ref_cov=65/20	total_cov=65/52
RA	743	.	1	70840	0	G	T	consensus_score=404.3	frequency=1	major_base=T	major_cov=50/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/68
RA	744	.	1	77008	0	T	C	consensus_score=373.7	frequency=1	major_base=C	major_cov=59/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/50
RA	745	.	1	78956	0	C	T	consensus_score=158.8	frequency=1	major_base=T	major_cov=24/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/23
RA	746	.	1	79481	0	T	C	consensus_score=380.4	frequency=1	major_base=C	major_cov=67/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/43
RA	747	.	1	85741	0	C	T	consensus_score=339.1	frequency=1	major_base=T	major_cov=56/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/44
RA	748	.	1	87013	1	.	T	bias_e_value=1637500	bias_p_value=0.753497	consensus_score=414.6	fisher_strand_p_value=0.386555	frequency=1	ks_quality_p_value=0.998719	major_base=T	major_cov=73/45	major_frequency=9.916e-01	minor_base=.	minor_cov=0/1	new_cov=73/45	polymorphism_frequency=9.916e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=0/1	total_cov=73/46
RA	749	.	1	89988	0	G	A	consensus_score=190.9	frequency=1	major_base=A	major_cov=26/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/32
RA	750	.	1	96038	0	T	C	consensus_score=402.3	frequency=1	major_base=C	major_cov=66/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/49
RA	751	.	1	96296	0	T	C	consensus_score=348.2	frequency=1	major_base=C	major_cov=45/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/61
RA	752	.	1	111886	0	T	C	consensus_score=348.4	frequency=1	major_base=C	major_cov=53/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/50
RA	753	.	1	115059	0	G	A	consensus_score=160.5	frequency=1	major_base=A	major_cov=28/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/20
RA	754	.	1	124317	0	C	T	consensus_score=422.9	frequency=1	major_base=T	major_cov=60/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/63
RA	755	.	1	129390	0	C	T	consensus_score=446.9	frequency=1	major_base=T	major_cov=61/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/67
RA	756	.	1	135870	0	G	.	consensus_score=465.9	frequency=1	major_base=.	major_cov=51/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/55
RA	757	.	1	135973	0	T	C	consensus_score=366.7	frequency=1	major_base=C	major_cov=51/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/58
RA	758	.	1	139530	0	T	G	bias_e_value=0.000841892	bias_p_value=3.87397e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=229.7	fisher_strand_p_value=1.50241e-11	frequency=2.083e-01	ks_quality_p_value=0.994533	major_base=T	major_cov=15/61	major_frequency=7.917e-01	minor_base=G	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.083e-01	polymorphism_score=10.1	prediction=polymorphism	ref_cov=15/61	total_cov=35/61
RA	759	.	1	139564	0	G	A	bias_e_value=0.00101661	bias_p_value=4.67794e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=201.3	fisher_strand_p_value=1.81804e-11	frequency=2.000e-01	ks_quality_p_value=1	major_base=G	major_cov=14/62	major_frequency=8.000e-01	minor_base=A	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.000e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=14/62	total_cov=33/62
RA	760	.	1	140427	0	C	T	consensus_score=159.6	frequency=1	major_base=T	major_cov=28/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/18
RA	761	.	1	147344	0	T	C	consensus_score=431.2	frequency=1	major_base=C	major_cov=67/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/59
RA	762	.	1	152675	0	G	T	consensus_score=354.7	frequency=1	major_base=T	major_cov=58/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/43
RA	763	.	1	156941	0	G	A	bias_e_value=2.12022e-05	bias_p_value=9.75623e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=239.4	fisher_strand_p_value=3.27987e-13	frequency=2.414e-01	ks_quality_p_value=1	major_base=G	major_cov=65/23	major_frequency=7.586e-01	minor_base=A	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.414e-01	polymorphism_score=22.8	prediction=polymorphism	ref_cov=65/23	total_cov=65/52
RA	764	.	1	157015	0	G	T	bias_e_value=3.70258e-07	bias_p_value=1.70374e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=162.4	fisher_strand_p_value=5.02209e-15	frequency=3.750e-01	ks_quality_p_value=1	major_base=G	major_cov=14/46	major_frequency=6.250e-01	minor_base=T	minor_cov=36/0	new_cov=36/0	polymorphism_frequency=3.750e-01	polymorphism_score=34.8	prediction=polymorphism	ref_cov=14/46	total_cov=50/46
RA	765	.	1	157053	0	G	A	bias_e_value=0.89872	bias_p_value=4.13547e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=176.2	fisher_strand_p_value=2.22064e-08	frequency=2.472e-01	ks_quality_p_value=1	major_base=G	major_cov=24/43	major_frequency=7.528e-01	minor_base=A	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.472e-01	polymorphism_score=13.1	prediction=polymorphism	ref_cov=24/43	total_cov=46/43
RA	766	.	1	157489	0	C	T	consensus_score=305.4	frequency=1	major_base=T	major_cov=40/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/49
RA	767	.	1	157752	0	G	A	consensus_score=387.9	frequency=1	major_base=A	major_cov=53/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/58
RA	768	.	1	162554	0	T	A	bias_e_value=0.495497	bias_p_value=2.28003e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=198.8	fisher_strand_p_value=1.18434e-08	frequency=2.333e-01	ks_quality_p_value=1	major_base=T	major_cov=23/46	major_frequency=7.667e-01	minor_base=A	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.333e-01	polymorphism_score=11.9	prediction=polymorphism	ref_cov=23/46	total_cov=45/46
RA	769	.	1	162574	0	G	A	bias_e_value=0.497556	bias_p_value=2.28951e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=200.6	fisher_strand_p_value=1.18953e-08	frequency=2.323e-01	ks_quality_p_value=1	major_base=G	major_cov=28/48	major_frequency=7.677e-01	minor_base=A	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.323e-01	polymorphism_score=12.0	prediction=polymorphism	ref_cov=28/48	total_cov=51/48
RA	770	.	1	165844	0	G	A	consensus_score=463.4	frequency=1	major_base=A	major_cov=59/73	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/73	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/73
RA	771	.	1	167796	0	A	G	consensus_score=460.3	frequency=1	major_base=G	major_cov=70/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=70/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=70/67
RA	772	.	1	182281	0	C	T	consensus_score=356.4	frequency=1	major_base=T	major_cov=56/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/49
RA	773	.	1	196666	0	G	T	consensus_score=480.7	frequency=1	major_base=T	major_cov=65/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/70
RA	774	.	1	200155	0	G	A	consensus_score=328.5	frequency=1	major_base=A	major_cov=41/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/56
RA	775	.	1	200373	0	C	T	consensus_score=416.6	frequency=1	major_base=T	major_cov=61/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/57
RA	776	.	1	216874	1	.	A	bias_e_value=1418.95	bias_p_value=0.000652931	consensus_score=273.2	fisher_strand_p_value=6.09947e-05	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=23/54	major_frequency=8.953e-01	minor_base=.	minor_cov=9/0	new_cov=23/54	polymorphism_frequency=8.953e-01	polymorphism_score=17.5	prediction=consensus	ref_cov=9/0	total_cov=32/54
RA	777	.	1	217647	0	G	T	bias_e_value=1.03161e-05	bias_p_value=4.74698e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=255.5	fisher_strand_p_value=1.55685e-13	frequency=2.095e-01	ks_quality_p_value=1	major_base=G	major_cov=69/14	major_frequency=7.905e-01	minor_base=T	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.095e-01	polymorphism_score=16.7	prediction=polymorphism	ref_cov=69/14	total_cov=69/36
RA	778	.	1	218868	0	G	A	consensus_score=399.4	frequency=1	major_base=A	major_cov=48/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/65
RA	779	.	1	230736	0	G	A	consensus_score=374.8	frequency=1	major_base=A	major_cov=51/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/64
RA	780	.	1	230757	0	G	A	consensus_score=427.0	frequency=1	major_base=A	major_cov=69/76	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/76	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/76
RA	781	.	1	235239	0	T	C	consensus_score=432.4	frequency=1	major_base=C	major_cov=63/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/63
RA	782	.	1	239682	0	A	G	bias_e_value=1506890	bias_p_value=0.693394	consensus_score=354.7	fisher_strand_p_value=0.477064	frequency=1	ks_quality_p_value=0.687085	major_base=G	major_cov=57/51	major_frequency=9.908e-01	minor_base=.	minor_cov=0/1	new_cov=57/51	polymorphism_frequency=9.908e-01	polymorphism_score=-3.0	prediction=consensus	ref_cov=0/0	total_cov=57/52
RA	783	.	1	247216	0	C	A	consensus_score=378.9	frequency=1	major_base=A	major_cov=54/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/53
RA	784	.	1	247551	0	A	C	bias_e_value=4.07838e-05	bias_p_value=1.87667e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=164.3	fisher_strand_p_value=6.456e-13	frequency=2.809e-01	ks_quality_p_value=1	major_base=A	major_cov=13/51	major_frequency=7.191e-01	minor_base=C	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.809e-01	polymorphism_score=10.6	prediction=polymorphism	ref_cov=13/51	total_cov=38/52
RA	785	.	1	247569	0	T	A	bias_e_value=0.000324623	bias_p_value=1.49376e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=154.8	fisher_strand_p_value=5.54942e-12	frequency=2.857e-01	ks_quality_p_value=1	major_base=T	major_cov=13/47	major_frequency=7.143e-01	minor_base=A	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.857e-01	polymorphism_score=17.0	prediction=polymorphism	ref_cov=13/47	total_cov=37/53
RA	786	.	1	247577	0	G	A	bias_e_value=3.10984	bias_p_value=1.431e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=146.7	fisher_strand_p_value=8.26768e-08	frequency=2.135e-01	ks_quality_p_value=1	major_base=G	major_cov=19/51	major_frequency=7.865e-01	minor_base=A	minor_cov=18/1	new_cov=18/1	polymorphism_frequency=2.135e-01	polymorphism_score=12.9	prediction=polymorphism	ref_cov=19/51	total_cov=38/52
RA	787	.	1	247614	0	A	C	bias_e_value=1.68163	bias_p_value=7.73803e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=162.6	fisher_strand_p_value=4.30845e-08	frequency=2.644e-01	ks_quality_p_value=1	major_base=A	major_cov=44/20	major_frequency=7.356e-01	minor_base=C	minor_cov=1/22	new_cov=1/22	polymorphism_frequency=2.644e-01	polymorphism_score=12.3	prediction=polymorphism	ref_cov=44/20	total_cov=45/42
RA	788	.	1	247688	0	A	C	bias_e_value=2.81696e-07	bias_p_value=1.29623e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=155.7	fisher_strand_p_value=3.78941e-15	frequency=3.370e-01	ks_quality_p_value=1	major_base=A	major_cov=52/9	major_frequency=6.630e-01	minor_base=C	minor_cov=1/30	new_cov=1/30	polymorphism_frequency=3.370e-01	polymorphism_score=19.7	prediction=polymorphism	ref_cov=52/9	total_cov=54/39
RA	789	.	1	248481	0	T	A	bias_e_value=0.0936278	bias_p_value=4.30829e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=273.8	fisher_strand_p_value=2.05109e-09	frequency=2.000e-01	ks_quality_p_value=1	major_base=T	major_cov=66/26	major_frequency=8.000e-01	minor_base=A	minor_cov=1/22	new_cov=1/22	polymorphism_frequency=2.000e-01	polymorphism_score=17.5	prediction=polymorphism	ref_cov=66/26	total_cov=68/49
RA	790	.	1	260198	0	T	C	consensus_score=370.7	frequency=1	major_base=C	major_cov=57/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/48
RA	791	.	1	261981	0	A	G	bias_e_value=0.183062	bias_p_value=8.42359e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=152.4	fisher_strand_p_value=4.1495e-09	frequency=2.778e-01	ks_quality_p_value=1	major_base=A	major_cov=23/42	major_frequency=7.222e-01	minor_base=G	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.778e-01	polymorphism_score=15.9	prediction=polymorphism	ref_cov=23/42	total_cov=48/42
RA	792	.	1	271028	0	C	T	consensus_score=352.7	frequency=1	major_base=T	major_cov=64/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/40
RA	793	.	1	273601	0	A	G	consensus_score=343.7	frequency=1	major_base=G	major_cov=59/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/42
RA	794	.	1	277256	0	C	T	consensus_score=372.3	frequency=1	major_base=T	major_cov=50/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/59
RA	795	.	1	281215	0	C	T	consensus_score=283.8	frequency=1	major_base=T	major_cov=28/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/55
RA	796	.	1	284392	0	C	A	bias_e_value=2.03312e-06	bias_p_value=9.35543e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=256.8	fisher_strand_p_value=2.90824e-14	frequency=2.602e-01	ks_quality_p_value=1	major_base=C	major_cov=25/66	major_frequency=7.398e-01	minor_base=A	minor_cov=32/0	new_cov=32/0	polymorphism_frequency=2.602e-01	polymorphism_score=25.6	prediction=polymorphism	ref_cov=25/66	total_cov=57/66
RA	797	.	1	284416	0	T	A	bias_e_value=0.000595498	bias_p_value=2.74019e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=275.2	fisher_strand_p_value=1.04242e-11	frequency=2.203e-01	ks_quality_p_value=1	major_base=T	major_cov=27/65	major_frequency=7.797e-01	minor_base=A	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.203e-01	polymorphism_score=14.8	prediction=polymorphism	ref_cov=27/65	total_cov=53/65
RA	798	.	1	284514	0	A	C	bias_e_value=1650510	bias_p_value=0.759485	consensus_score=250.0	fisher_strand_p_value=0.392405	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=30/48	major_frequency=9.873e-01	minor_base=A	minor_cov=1/0	new_cov=30/48	polymorphism_frequency=9.873e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=31/48
RA	799	.	1	284699	0	A	G	bias_e_value=1.80132	bias_p_value=8.28881e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=121.5	fisher_strand_p_value=4.63391e-08	frequency=2.459e-01	ks_quality_p_value=1	major_base=A	major_cov=10/36	major_frequency=7.541e-01	minor_base=G	minor_cov=15/0	new_cov=15/0	polymorphism_frequency=2.459e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=10/36	total_cov=26/36
RA	800	.	1	284714	0	C	G	bias_e_value=0.0831357	bias_p_value=3.82549e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=133.1	fisher_strand_p_value=1.81048e-09	frequency=2.857e-01	ks_quality_p_value=1	major_base=C	major_cov=9/36	major_frequency=7.143e-01	minor_base=G	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.857e-01	polymorphism_score=12.1	prediction=polymorphism	ref_cov=9/36	total_cov=27/36
RA	801	.	1	296225	0	A	G	consensus_score=285.1	frequency=1	major_base=G	major_cov=48/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/36
RA	802	.	1	298387	0	C	T	consensus_score=343.1	frequency=1	major_base=T	major_cov=48/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/53
RA	803	.	1	299927	0	T	C	consensus_score=264.2	frequency=1	major_base=C	major_cov=48/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/29
RA	804	.	1	300866	0	T	A	bias_e_value=6.8965e-05	bias_p_value=3.17343e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=182.6	fisher_strand_p_value=1.11253e-12	frequency=2.603e-01	ks_quality_p_value=1	major_base=T	major_cov=48/6	major_frequency=7.397e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.603e-01	polymorphism_score=17.8	prediction=polymorphism	ref_cov=48/6	total_cov=48/25
RA	805	.	1	300882	0	T	C	bias_e_value=1.55667e-07	bias_p_value=7.16303e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=146.8	fisher_strand_p_value=2.05731e-15	frequency=2.895e-01	ks_quality_p_value=1	major_base=T	major_cov=50/4	major_frequency=7.105e-01	minor_base=C	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.895e-01	polymorphism_score=10.4	prediction=polymorphism	ref_cov=50/4	total_cov=50/29
RA	806	.	1	300912	0	A	T	bias_e_value=1.92164e-05	bias_p_value=8.84243e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=183.5	fisher_strand_p_value=2.96253e-13	frequency=2.727e-01	ks_quality_p_value=1	major_base=A	major_cov=49/7	major_frequency=7.273e-01	minor_base=T	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.727e-01	polymorphism_score=11.2	prediction=polymorphism	ref_cov=49/7	total_cov=49/28
RA	807	.	1	303269	0	G	A	consensus_score=319.7	frequency=1	major_base=A	major_cov=44/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/48
RA	808	.	1	313272	0	T	C	consensus_score=398.8	frequency=1	major_base=C	major_cov=42/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/70
RA	809	.	1	325396	0	T	C	consensus_score=390.4	frequency=1	major_base=C	major_cov=52/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/58
RA	810	.	1	331304	0	C	T	consensus_score=466.9	frequency=1	major_base=T	major_cov=63/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/68
RA	811	.	1	336183	0	A	G	consensus_score=216.2	frequency=1	major_base=G	major_cov=31/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/30
RA	812	.	1	351587	0	G	T	consensus_score=425.0	frequency=1	major_base=T	major_cov=51/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/69
RA	813	.	1	354607	0	A	G	consensus_score=303.9	frequency=1	major_base=G	major_cov=48/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/42
RA	814	.	1	354711	0	A	G	consensus_score=290.8	frequency=1	major_base=G	major_cov=37/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/46
RA	815	.	1	359730	0	A	G	consensus_score=306.8	frequency=1	major_base=G	major_cov=46/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/45
RA	816	.	1	361109	0	T	C	bias_e_value=1.04858e-10	bias_p_value=4.82505e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=219.5	fisher_strand_p_value=1.14026e-18	frequency=2.816e-01	ks_quality_p_value=1	major_base=T	major_cov=8/66	major_frequency=7.184e-01	minor_base=C	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=2.816e-01	polymorphism_score=15.0	prediction=polymorphism	ref_cov=8/66	total_cov=37/66
RA	817	.	1	368019	0	C	T	consensus_score=309.6	frequency=1	major_base=T	major_cov=40/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/50
RA	818	.	1	378263	0	A	C	bias_e_value=5.8597e-07	bias_p_value=2.69634e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=273.3	fisher_strand_p_value=8.06038e-15	frequency=3.252e-01	ks_quality_p_value=1	major_base=A	major_cov=57/26	major_frequency=6.748e-01	minor_base=C	minor_cov=0/40	new_cov=0/40	polymorphism_frequency=3.252e-01	polymorphism_score=11.9	prediction=polymorphism	ref_cov=57/26	total_cov=57/66
RA	819	.	1	378326	0	A	C	bias_e_value=6.2974e-06	bias_p_value=2.89775e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=253.4	fisher_strand_p_value=9.34725e-14	frequency=2.683e-01	ks_quality_p_value=1	major_base=A	major_cov=63/27	major_frequency=7.317e-01	minor_base=C	minor_cov=0/33	new_cov=0/33	polymorphism_frequency=2.683e-01	polymorphism_score=18.0	prediction=polymorphism	ref_cov=63/27	total_cov=63/60
RA	820	.	1	384169	0	C	A	bias_e_value=0.0761439	bias_p_value=3.50377e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=212.5	fisher_strand_p_value=1.65102e-09	frequency=2.174e-01	ks_quality_p_value=1	major_base=C	major_cov=20/52	major_frequency=7.826e-01	minor_base=A	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.174e-01	polymorphism_score=13.5	prediction=polymorphism	ref_cov=20/52	total_cov=40/52
RA	821	.	1	384194	0	T	A	bias_e_value=0.000753937	bias_p_value=3.46924e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=221.3	fisher_strand_p_value=1.33219e-11	frequency=2.418e-01	ks_quality_p_value=1	major_base=T	major_cov=15/54	major_frequency=7.582e-01	minor_base=A	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.418e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=15/54	total_cov=37/54
RA	822	.	1	384205	0	G	A	bias_e_value=6.02708e-12	bias_p_value=2.77337e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=131.3	fisher_strand_p_value=6.13055e-20	frequency=3.483e-01	ks_quality_p_value=1	major_base=G	major_cov=4/54	major_frequency=6.517e-01	minor_base=A	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=3.483e-01	polymorphism_score=32.1	prediction=polymorphism	ref_cov=4/54	total_cov=36/54
RA	823	.	1	384227	0	T	A	bias_e_value=8.4626e-05	bias_p_value=3.89407e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=244.4	fisher_strand_p_value=1.3754e-12	frequency=2.371e-01	ks_quality_p_value=1	major_base=T	major_cov=15/59	major_frequency=7.629e-01	minor_base=A	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.371e-01	polymorphism_score=10.8	prediction=polymorphism	ref_cov=15/59	total_cov=38/59
RA	824	.	1	389250	0	A	G	consensus_score=351.3	frequency=1	major_base=G	major_cov=53/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/50
RA	825	.	1	391908	0	G	A	bias_e_value=0.012239	bias_p_value=5.6318e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=184.2	fisher_strand_p_value=2.43419e-10	frequency=2.198e-01	ks_quality_p_value=1	major_base=G	major_cov=54/17	major_frequency=7.802e-01	minor_base=A	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.198e-01	polymorphism_score=11.3	prediction=polymorphism	ref_cov=54/17	total_cov=54/37
RA	826	.	1	391959	0	T	C	bias_e_value=1.3825e-08	bias_p_value=6.36156e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=159.6	fisher_strand_p_value=1.70516e-16	frequency=2.874e-01	ks_quality_p_value=1	major_base=T	major_cov=56/6	major_frequency=7.126e-01	minor_base=C	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.874e-01	polymorphism_score=20.8	prediction=polymorphism	ref_cov=56/6	total_cov=56/31
RA	827	.	1	401694	0	C	A	consensus_score=409.8	frequency=1	major_base=A	major_cov=54/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/62
RA	828	.	1	405393	0	A	G	consensus_score=495.9	frequency=1	major_base=G	major_cov=77/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=77/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=77/67
RA	829	.	1	406867	0	A	C	consensus_score=392.7	frequency=1	major_base=C	major_cov=66/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/52
RA	830	.	1	410231	0	A	G	consensus_score=524.2	frequency=1	major_base=G	major_cov=78/78	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=78/78	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=78/78
RA	831	.	1	411710	0	G	T	consensus_score=430.2	frequency=1	major_base=T	major_cov=63/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/63
RA	832	.	1	415649	0	T	C	consensus_score=290.4	frequency=1	major_base=C	major_cov=47/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/38
RA	833	.	1	425295	0	C	T	bias_e_value=0.285354	bias_p_value=1.31306e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=198.5	fisher_strand_p_value=6.62054e-09	frequency=2.162e-01	ks_quality_p_value=1	major_base=C	major_cov=33/54	major_frequency=7.838e-01	minor_base=T	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.162e-01	polymorphism_score=17.6	prediction=polymorphism	ref_cov=33/54	total_cov=57/54
RA	834	.	1	425302	0	C	T	bias_e_value=0.499356	bias_p_value=2.29779e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=210.6	fisher_strand_p_value=1.19407e-08	frequency=2.130e-01	ks_quality_p_value=1	major_base=C	major_cov=31/54	major_frequency=7.870e-01	minor_base=T	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.130e-01	polymorphism_score=13.3	prediction=polymorphism	ref_cov=31/54	total_cov=56/54
RA	835	.	1	425311	0	A	T	bias_e_value=1.09323e-09	bias_p_value=5.03051e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=200.4	fisher_strand_p_value=1.26038e-17	frequency=3.455e-01	ks_quality_p_value=1	major_base=A	major_cov=15/57	major_frequency=6.545e-01	minor_base=T	minor_cov=38/0	new_cov=38/0	polymorphism_frequency=3.455e-01	polymorphism_score=44.4	prediction=polymorphism	ref_cov=15/57	total_cov=53/57
RA	836	.	1	425323	0	T	G	bias_e_value=2.71699e-10	bias_p_value=1.25022e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=210.0	fisher_strand_p_value=3.02425e-18	frequency=3.303e-01	ks_quality_p_value=1	major_base=T	major_cov=13/60	major_frequency=6.697e-01	minor_base=G	minor_cov=36/0	new_cov=36/0	polymorphism_frequency=3.303e-01	polymorphism_score=28.6	prediction=polymorphism	ref_cov=13/60	total_cov=49/60
RA	837	.	1	425325	0	A	G	bias_e_value=0.0103209	bias_p_value=4.74915e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=226.3	fisher_strand_p_value=2.03701e-10	frequency=2.056e-01	ks_quality_p_value=1	major_base=A	major_cov=24/61	major_frequency=7.944e-01	minor_base=G	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.056e-01	polymorphism_score=10.4	prediction=polymorphism	ref_cov=24/61	total_cov=50/61
RA	838	.	1	425340	0	C	T	bias_e_value=1.08857e-09	bias_p_value=5.00908e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=206.6	fisher_strand_p_value=1.25488e-17	frequency=2.975e-01	ks_quality_p_value=1	major_base=C	major_cov=18/67	major_frequency=7.025e-01	minor_base=T	minor_cov=36/0	new_cov=36/0	polymorphism_frequency=2.975e-01	polymorphism_score=22.9	prediction=polymorphism	ref_cov=18/67	total_cov=54/67
RA	839	.	1	428456	0	G	A	consensus_score=387.1	frequency=1	major_base=A	major_cov=53/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/62
RA	840	.	1	429053	0	T	C	consensus_score=430.4	frequency=1	major_base=C	major_cov=66/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/61
RA	841	.	1	435656	0	C	T	consensus_score=401.4	frequency=1	major_base=T	major_cov=37/77	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/77	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/77
RA	842	.	1	438200	0	G	A	consensus_score=390.7	frequency=1	major_base=A	major_cov=51/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/62
RA	843	.	1	438425	0	G	A	consensus_score=319.3	frequency=1	major_base=A	major_cov=60/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/34
RA	844	.	1	440006	0	A	G	consensus_score=453.3	frequency=1	major_base=G	major_cov=66/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/64
RA	845	.	1	447021	0	A	T	bias_e_value=0.044576	bias_p_value=2.05117e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=218.2	fisher_strand_p_value=9.41619e-10	frequency=2.317e-01	ks_quality_p_value=1	major_base=A	major_cov=15/48	major_frequency=7.683e-01	minor_base=T	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.317e-01	polymorphism_score=15.3	prediction=polymorphism	ref_cov=15/48	total_cov=34/48
RA	846	.	1	453641	0	C	T	consensus_score=287.7	frequency=1	major_base=T	major_cov=46/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/39
RA	847	.	1	455998	0	C	T	consensus_score=300.4	frequency=1	major_base=T	major_cov=46/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/47
RA	848	.	1	459724	0	C	T	consensus_score=235.9	frequency=1	major_base=T	major_cov=27/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/43
RA	849	.	1	468332	0	T	C	bias_e_value=6.95487e-08	bias_p_value=3.20029e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=170.9	fisher_strand_p_value=8.97781e-16	frequency=2.796e-01	ks_quality_p_value=1	major_base=T	major_cov=58/9	major_frequency=7.204e-01	minor_base=C	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=2.796e-01	polymorphism_score=17.8	prediction=polymorphism	ref_cov=58/9	total_cov=58/36
RA	850	.	1	468967	0	T	C	consensus_score=357.5	frequency=1	major_base=C	major_cov=47/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/56
RA	851	.	1	471993	1	.	G	consensus_score=395.8	frequency=1	major_base=G	major_cov=72/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=72/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=72/47
RA	852	.	1	477267	0	G	T	bias_e_value=7.2439e-09	bias_p_value=3.33329e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=221.7	fisher_strand_p_value=8.77835e-17	frequency=2.809e-01	ks_quality_p_value=1	major_base=G	major_cov=6/58	major_frequency=7.191e-01	minor_base=T	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.809e-01	polymorphism_score=13.6	prediction=polymorphism	ref_cov=6/58	total_cov=31/58
RA	853	.	1	477303	0	C	T	bias_e_value=973686	bias_p_value=0.448042	consensus_score=289.3	fisher_strand_p_value=0.159102	frequency=1	ks_quality_p_value=0.987995	major_base=T	major_cov=35/55	major_frequency=9.783e-01	minor_base=C	minor_cov=2/0	new_cov=35/55	polymorphism_frequency=9.783e-01	polymorphism_score=-5.7	prediction=consensus	ref_cov=2/0	total_cov=37/55
RA	854	.	1	479202	0	A	G	bias_e_value=0.0100091	bias_p_value=4.6057e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=249.3	fisher_strand_p_value=1.97277e-10	frequency=2.326e-01	ks_quality_p_value=1	major_base=A	major_cov=39/60	major_frequency=7.674e-01	minor_base=G	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=2.326e-01	polymorphism_score=12.7	prediction=polymorphism	ref_cov=39/60	total_cov=71/60
RA	855	.	1	479799	0	A	C	bias_e_value=6.1201e-08	bias_p_value=2.81617e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=271.8	fisher_strand_p_value=7.8712e-16	frequency=3.077e-01	ks_quality_p_value=1	major_base=A	major_cov=63/27	major_frequency=6.923e-01	minor_base=C	minor_cov=0/40	new_cov=0/40	polymorphism_frequency=3.077e-01	polymorphism_score=17.8	prediction=polymorphism	ref_cov=63/27	total_cov=63/68
RA	856	.	1	480381	0	G	T	bias_e_value=6.39521e-05	bias_p_value=2.94276e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=214.2	fisher_strand_p_value=1.02884e-12	frequency=2.444e-01	ks_quality_p_value=1	major_base=G	major_cov=12/56	major_frequency=7.556e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.444e-01	polymorphism_score=21.1	prediction=polymorphism	ref_cov=12/56	total_cov=34/56
RA	857	.	1	480395	0	C	A	bias_e_value=0.7155	bias_p_value=3.29238e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=212.5	fisher_strand_p_value=1.74535e-08	frequency=2.069e-01	ks_quality_p_value=1	major_base=C	major_cov=20/49	major_frequency=7.931e-01	minor_base=A	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.069e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=20/49	total_cov=39/49
RA	858	.	1	483049	0	A	G	bias_e_value=0.0475505	bias_p_value=2.18804e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=143.6	fisher_strand_p_value=1.00758e-09	frequency=2.192e-01	ks_quality_p_value=1	major_base=A	major_cov=10/47	major_frequency=7.808e-01	minor_base=G	minor_cov=16/0	new_cov=16/0	polymorphism_frequency=2.192e-01	polymorphism_score=13.4	prediction=polymorphism	ref_cov=10/47	total_cov=27/47
RA	859	.	1	483105	0	C	T	bias_e_value=0.131732	bias_p_value=6.06167e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=156.8	fisher_strand_p_value=2.93597e-09	frequency=2.329e-01	ks_quality_p_value=1	major_base=C	major_cov=12/44	major_frequency=7.671e-01	minor_base=T	minor_cov=17/0	new_cov=17/0	polymorphism_frequency=2.329e-01	polymorphism_score=13.8	prediction=polymorphism	ref_cov=12/44	total_cov=29/44
RA	860	.	1	484203	0	A	G	bias_e_value=2173140	bias_p_value=0.999972	consensus_score=258.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.9925	major_base=G	major_cov=61/20	major_frequency=9.878e-01	minor_base=A	minor_cov=1/0	new_cov=61/20	polymorphism_frequency=9.878e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=62/20
RA	861	.	1	488294	0	A	G	consensus_score=356.7	frequency=1	major_base=G	major_cov=46/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/59
RA	862	.	1	490790	0	G	A	consensus_score=269.1	frequency=1	major_base=A	major_cov=44/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/32
RA	863	.	1	492787	0	C	T	bias_e_value=0.00553165	bias_p_value=2.54539e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=220.8	fisher_strand_p_value=1.0621e-10	frequency=2.091e-01	ks_quality_p_value=1	major_base=C	major_cov=62/25	major_frequency=7.909e-01	minor_base=T	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.091e-01	polymorphism_score=16.2	prediction=polymorphism	ref_cov=62/25	total_cov=62/48
RA	864	.	1	492795	0	C	A	bias_e_value=0.00298409	bias_p_value=1.37313e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=287.1	fisher_strand_p_value=5.57972e-11	frequency=2.124e-01	ks_quality_p_value=1	major_base=C	major_cov=63/26	major_frequency=7.876e-01	minor_base=A	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.124e-01	polymorphism_score=11.2	prediction=polymorphism	ref_cov=63/26	total_cov=63/50
RA	865	.	1	493704	0	T	C	consensus_score=233.1	frequency=1	major_base=C	major_cov=30/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/39
RA	866	.	1	494591	0	C	T	consensus_score=370.5	frequency=1	major_base=T	major_cov=52/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/56
RA	867	.	1	496502	0	G	A	bias_e_value=1732490	bias_p_value=0.797204	consensus_score=443.7	fisher_strand_p_value=0.438462	frequency=1	ks_quality_p_value=0.992396	major_base=A	major_cov=56/73	major_frequency=9.923e-01	minor_base=G	minor_cov=1/0	new_cov=56/73	polymorphism_frequency=9.923e-01	polymorphism_score=-4.8	prediction=consensus	ref_cov=1/0	total_cov=57/73
RA	868	.	1	501342	0	A	G	consensus_score=413.3	frequency=1	major_base=G	major_cov=59/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/61
RA	869	.	1	506117	0	A	C	consensus_score=292.6	frequency=1	major_base=C	major_cov=53/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/33
RA	870	.	1	506868	0	T	G	bias_e_value=3.39987e-10	bias_p_value=1.56445e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=311.9	fisher_strand_p_value=3.80552e-18	frequency=2.778e-01	ks_quality_p_value=1	major_base=T	major_cov=18/73	major_frequency=7.222e-01	minor_base=G	minor_cov=35/0	new_cov=35/0	polymorphism_frequency=2.778e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=18/73	total_cov=54/73
RA	871	.	1	508530	0	C	A	bias_e_value=1261220	bias_p_value=0.580349	consensus_score=363.9	fisher_strand_p_value=0.238491	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=51/55	major_frequency=9.815e-01	minor_base=G	minor_cov=2/0	new_cov=51/55	polymorphism_frequency=9.815e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/55
RA	872	.	1	510039	0	C	T	consensus_score=452.4	frequency=1	major_base=T	major_cov=73/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/60
RA	873	.	1	510667	0	A	G	consensus_score=458.5	frequency=1	major_base=G	major_cov=61/73	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/73	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/73
RA	874	.	1	515639	0	A	T	bias_e_value=266.007	bias_p_value=0.000122403	consensus_reject=FREQUENCY_CUTOFF	consensus_score=186.3	fisher_strand_p_value=9.76348e-06	frequency=2.632e-01	ks_quality_p_value=1	major_base=A	major_cov=29/27	major_frequency=7.368e-01	minor_base=T	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.632e-01	polymorphism_score=11.7	prediction=polymorphism	ref_cov=29/27	total_cov=29/48
RA	875	.	1	515668	0	C	T	bias_e_value=58.4146	bias_p_value=2.68795e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=154.8	fisher_strand_p_value=2.13312e-06	frequency=2.208e-01	ks_quality_p_value=0.888919	major_base=C	major_cov=37/23	major_frequency=7.792e-01	minor_base=T	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=2.208e-01	polymorphism_score=13.7	prediction=polymorphism	ref_cov=37/23	total_cov=37/40
RA	876	.	1	535036	0	A	C	bias_e_value=1.39047e-09	bias_p_value=6.39825e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=303.2	fisher_strand_p_value=1.61304e-17	frequency=2.891e-01	ks_quality_p_value=1	major_base=A	major_cov=70/21	major_frequency=7.109e-01	minor_base=C	minor_cov=0/37	new_cov=0/37	polymorphism_frequency=2.891e-01	polymorphism_score=13.3	prediction=polymorphism	ref_cov=70/21	total_cov=70/58
RA	877	.	1	544418	0	G	T	consensus_score=479.3	frequency=1	major_base=T	major_cov=74/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=74/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=74/66
RA	878	.	1	548198	0	T	G	bias_e_value=7.93059e-09	bias_p_value=3.64926e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=198.5	fisher_strand_p_value=9.6341e-17	frequency=3.226e-01	ks_quality_p_value=1	major_base=T	major_cov=9/54	major_frequency=6.774e-01	minor_base=G	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=3.226e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=9/54	total_cov=39/54
RA	879	.	1	548211	0	C	T	bias_e_value=0.00384042	bias_p_value=1.76717e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=173.3	fisher_strand_p_value=7.25849e-11	frequency=2.418e-01	ks_quality_p_value=1	major_base=C	major_cov=17/52	major_frequency=7.582e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.418e-01	polymorphism_score=15.3	prediction=polymorphism	ref_cov=17/52	total_cov=39/52
RA	880	.	1	548247	0	G	T	bias_e_value=0.000199784	bias_p_value=9.19309e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=235.0	fisher_strand_p_value=3.35254e-12	frequency=2.371e-01	ks_quality_p_value=1	major_base=G	major_cov=16/58	major_frequency=7.629e-01	minor_base=T	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.371e-01	polymorphism_score=18.1	prediction=polymorphism	ref_cov=16/58	total_cov=39/58
RA	881	.	1	549790	0	A	G	consensus_score=423.1	frequency=1	major_base=G	major_cov=61/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/63
RA	882	.	1	562377	0	C	T	consensus_score=326.5	frequency=1	major_base=T	major_cov=48/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/47
RA	883	.	1	564646	0	A	C	consensus_score=137.7	frequency=1	major_base=C	major_cov=14/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/26
RA	884	.	1	567551	0	A	G	consensus_score=286.5	frequency=1	major_base=G	major_cov=42/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/43
RA	885	.	1	577273	0	G	T	consensus_score=320.7	frequency=1	major_base=T	major_cov=40/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/49
RA	886	.	1	578332	0	C	A	bias_e_value=3.19642e-05	bias_p_value=1.47084e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=218.7	fisher_strand_p_value=5.01634e-13	frequency=2.688e-01	ks_quality_p_value=1	major_base=C	major_cov=54/14	major_frequency=7.312e-01	minor_base=A	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.688e-01	polymorphism_score=29.1	prediction=polymorphism	ref_cov=54/14	total_cov=54/39
RA	887	.	1	578352	0	G	A	bias_e_value=0.121803	bias_p_value=5.60479e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=181.3	fisher_strand_p_value=2.70389e-09	frequency=2.222e-01	ks_quality_p_value=1	major_base=G	major_cov=50/20	major_frequency=7.778e-01	minor_base=A	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.222e-01	polymorphism_score=10.6	prediction=polymorphism	ref_cov=50/20	total_cov=50/40
RA	888	.	1	578356	0	G	A	bias_e_value=0.000109608	bias_p_value=5.04361e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=176.2	fisher_strand_p_value=1.79846e-12	frequency=2.809e-01	ks_quality_p_value=1	major_base=G	major_cov=50/14	major_frequency=7.191e-01	minor_base=A	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.809e-01	polymorphism_score=15.7	prediction=polymorphism	ref_cov=50/14	total_cov=50/40
RA	889	.	1	578382	0	A	C	bias_e_value=0.00566182	bias_p_value=2.60529e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=186.4	fisher_strand_p_value=1.08908e-10	frequency=2.706e-01	ks_quality_p_value=0.999192	major_base=A	major_cov=46/16	major_frequency=7.294e-01	minor_base=C	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.706e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=46/16	total_cov=46/40
RA	890	.	1	580218	0	T	C	consensus_score=375.2	frequency=1	major_base=C	major_cov=51/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/59
RA	891	.	1	583564	0	C	T	bias_e_value=4.71797e-06	bias_p_value=2.17098e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=139.8	fisher_strand_p_value=6.93615e-14	frequency=3.049e-01	ks_quality_p_value=1	major_base=C	major_cov=48/9	major_frequency=6.951e-01	minor_base=T	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=3.049e-01	polymorphism_score=20.6	prediction=polymorphism	ref_cov=48/9	total_cov=48/34
RA	892	.	1	584015	0	A	G	consensus_score=329.0	frequency=1	major_base=G	major_cov=53/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/40
RA	893	.	1	587904	0	A	G	consensus_score=84.7	frequency=1	major_base=G	major_cov=16/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/13
RA	894	.	1	589755	0	G	A	bias_e_value=0.0139173	bias_p_value=6.40407e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=122.8	fisher_strand_p_value=2.81128e-10	frequency=2.667e-01	ks_quality_p_value=0.99035	major_base=G	major_cov=43/12	major_frequency=7.333e-01	minor_base=A	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.667e-01	polymorphism_score=22.8	prediction=polymorphism	ref_cov=43/12	total_cov=43/32
RA	895	.	1	591727	0	G	A	bias_e_value=0.506145	bias_p_value=2.32903e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=182.2	fisher_strand_p_value=1.2112e-08	frequency=2.381e-01	ks_quality_p_value=1	major_base=G	major_cov=32/48	major_frequency=7.619e-01	minor_base=A	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.381e-01	polymorphism_score=22.5	prediction=polymorphism	ref_cov=32/48	total_cov=57/48
RA	896	.	1	601066	0	A	G	consensus_score=341.2	frequency=1	major_base=G	major_cov=51/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/47
RA	897	.	1	613468	0	C	T	consensus_score=280.7	frequency=1	major_base=T	major_cov=45/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/37
RA	898	.	1	618437	0	C	A	consensus_score=124.1	frequency=1	major_base=A	major_cov=22/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/14
RA	899	.	1	630181	0	T	G	bias_e_value=4.20291e-05	bias_p_value=1.93397e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=192.1	fisher_strand_p_value=6.66027e-13	frequency=3.455e-01	ks_quality_p_value=1	major_base=T	major_cov=25/47	major_frequency=6.545e-01	minor_base=G	minor_cov=38/0	new_cov=38/0	polymorphism_frequency=3.455e-01	polymorphism_score=32.0	prediction=polymorphism	ref_cov=25/47	total_cov=63/47
RA	900	.	1	630948	0	T	C	consensus_score=421.1	frequency=1	major_base=C	major_cov=67/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/56
RA	901	.	1	634761	0	T	C	consensus_score=336.1	frequency=1	major_base=C	major_cov=47/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/53
RA	902	.	1	640919	0	C	T	consensus_score=344.8	frequency=1	major_base=T	major_cov=40/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/62
RA	903	.	1	641782	0	C	T	bias_e_value=971857	bias_p_value=0.4472	consensus_score=404.9	fisher_strand_p_value=0.156737	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=47/74	major_frequency=9.837e-01	minor_base=A	minor_cov=2/0	new_cov=47/74	polymorphism_frequency=9.837e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/74
RA	904	.	1	643124	0	T	C	consensus_score=413.4	frequency=1	major_base=C	major_cov=63/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/59
RA	905	.	1	649041	0	T	G	bias_e_value=5.03868e-11	bias_p_value=2.31855e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=158.3	fisher_strand_p_value=5.38375e-19	frequency=4.022e-01	ks_quality_p_value=1	major_base=T	major_cov=7/48	major_frequency=5.978e-01	minor_base=G	minor_cov=37/0	new_cov=37/0	polymorphism_frequency=4.022e-01	polymorphism_score=18.6	prediction=polymorphism	ref_cov=7/48	total_cov=44/48
RA	906	.	1	649068	0	T	G	bias_e_value=3.80096	bias_p_value=1.74901e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=232.9	fisher_strand_p_value=1.0231e-07	frequency=2.549e-01	ks_quality_p_value=1	major_base=T	major_cov=35/41	major_frequency=7.451e-01	minor_base=G	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.549e-01	polymorphism_score=18.9	prediction=polymorphism	ref_cov=35/41	total_cov=63/41
RA	907	.	1	649089	0	A	G	bias_e_value=23.8075	bias_p_value=1.0955e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=227.1	fisher_strand_p_value=7.23631e-07	frequency=2.308e-01	ks_quality_p_value=1	major_base=A	major_cov=39/41	major_frequency=7.692e-01	minor_base=G	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.308e-01	polymorphism_score=10.4	prediction=polymorphism	ref_cov=39/41	total_cov=63/41
RA	908	.	1	660785	0	T	C	bias_e_value=2173170	bias_p_value=0.999986	consensus_score=459.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.994754	major_base=C	major_cov=79/57	major_frequency=9.927e-01	minor_base=G	minor_cov=1/0	new_cov=79/57	polymorphism_frequency=9.927e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/0	total_cov=80/57
RA	909	.	1	661686	0	A	C	consensus_score=403.6	frequency=1	major_base=C	major_cov=61/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/54
RA	910	.	1	666029	0	T	C	consensus_score=283.8	frequency=1	major_base=C	major_cov=50/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/33
RA	911	.	1	684206	0	C	T	consensus_score=202.1	frequency=1	major_base=T	major_cov=25/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/35
RA	912	.	1	685236	0	G	T	bias_e_value=0.0751346	bias_p_value=3.45732e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=148.8	fisher_strand_p_value=1.62806e-09	frequency=2.676e-01	ks_quality_p_value=1	major_base=G	major_cov=12/40	major_frequency=7.324e-01	minor_base=T	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.676e-01	polymorphism_score=16.6	prediction=polymorphism	ref_cov=12/40	total_cov=31/40
RA	913	.	1	685256	0	C	T	bias_e_value=0.075214	bias_p_value=3.46098e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=115.4	fisher_strand_p_value=1.62986e-09	frequency=2.794e-01	ks_quality_p_value=1	major_base=C	major_cov=11/38	major_frequency=7.206e-01	minor_base=T	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.794e-01	polymorphism_score=12.6	prediction=polymorphism	ref_cov=11/38	total_cov=30/38
RA	914	.	1	687069	0	T	C	consensus_score=256.4	frequency=1	major_base=C	major_cov=31/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/42
RA	915	.	1	688989	0	A	G	consensus_score=152.5	frequency=1	major_base=G	major_cov=18/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/27
RA	916	.	1	689431	0	A	G	consensus_score=11.0	frequency=1	major_base=G	major_cov=3/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/2
RA	917	.	1	689432	0	C	T	consensus_score=10.3	frequency=1	major_base=T	major_cov=3/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/2
RA	918	.	1	689437	0	G	T	consensus_score=15.3	frequency=1	major_base=T	major_cov=4/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/2
RA	919	.	1	689498	0	G	A	consensus_score=97.1	frequency=1	major_base=A	major_cov=14/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/18
RA	920	.	1	691498	0	C	T	consensus_score=270.2	frequency=1	major_base=T	major_cov=46/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/33
RA	921	.	1	704031	0	T	C	consensus_score=369.6	frequency=1	major_base=C	major_cov=58/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/50
RA	922	.	1	704184	0	A	G	bias_e_value=2173200	bias_p_value=0.999997	consensus_score=52.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997519	major_base=G	major_cov=12/11	major_frequency=8.214e-01	minor_base=A	minor_cov=3/2	new_cov=12/11	polymorphism_frequency=8.214e-01	polymorphism_score=7.0	prediction=consensus	ref_cov=3/2	total_cov=15/13
RA	923	.	1	709897	0	G	A	consensus_score=332.2	frequency=1	major_base=A	major_cov=51/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/46
RA	924	.	1	716452	0	T	G	consensus_score=377.2	frequency=1	major_base=G	major_cov=63/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/45
RA	925	.	1	716971	0	T	C	consensus_score=367.3	frequency=1	major_base=C	major_cov=55/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/52
RA	926	.	1	718331	0	T	C	consensus_score=265.7	frequency=1	major_base=C	major_cov=33/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/45
RA	927	.	1	721213	0	G	A	bias_e_value=921.354	bias_p_value=0.000423962	consensus_score=240.9	fisher_strand_p_value=3.79214e-05	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=53/29	major_frequency=8.817e-01	minor_base=C	minor_cov=0/11	new_cov=53/29	polymorphism_frequency=8.817e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=0/0	total_cov=53/40
RA	928	.	1	725907	0	T	C	consensus_score=361.5	frequency=1	major_base=C	major_cov=45/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/59
RA	929	.	1	726416	0	G	A	consensus_score=372.7	frequency=1	major_base=A	major_cov=41/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/67
RA	930	.	1	731551	0	A	C	consensus_score=356.1	frequency=1	major_base=C	major_cov=55/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/50
RA	931	.	1	733037	0	T	A	bias_e_value=0.00954454	bias_p_value=4.39193e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=183.0	fisher_strand_p_value=1.87721e-10	frequency=2.674e-01	ks_quality_p_value=1	major_base=T	major_cov=17/46	major_frequency=7.326e-01	minor_base=A	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.674e-01	polymorphism_score=12.3	prediction=polymorphism	ref_cov=17/46	total_cov=40/46
RA	932	.	1	738002	0	A	G	consensus_score=361.9	frequency=1	major_base=G	major_cov=60/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/47
RA	933	.	1	748567	0	G	A	consensus_score=263.6	frequency=1	major_base=A	major_cov=35/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/42
RA	934	.	1	749306	0	A	T	bias_e_value=4.04412e-05	bias_p_value=1.8609e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=147.4	fisher_strand_p_value=6.39984e-13	frequency=3.188e-01	ks_quality_p_value=1	major_base=A	major_cov=6/41	major_frequency=6.812e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=3.188e-01	polymorphism_score=21.5	prediction=polymorphism	ref_cov=6/41	total_cov=28/41
RA	935	.	1	755937	0	T	C	consensus_score=243.6	frequency=1	major_base=C	major_cov=34/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/36
RA	936	.	1	762071	0	G	A	consensus_score=133.1	frequency=1	major_base=A	major_cov=19/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/20
RA	937	.	1	765866	0	G	T	consensus_score=291.8	frequency=1	major_base=T	major_cov=36/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/49
RA	938	.	1	768021	0	T	C	consensus_score=213.8	frequency=1	major_base=C	major_cov=24/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/39
RA	939	.	1	769065	0	T	C	consensus_score=214.9	frequency=1	major_base=C	major_cov=38/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/25
RA	940	.	1	769914	0	C	T	consensus_score=267.6	frequency=1	major_base=T	major_cov=37/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/43
RA	941	.	1	771267	0	G	A	consensus_score=289.7	frequency=1	major_base=A	major_cov=51/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/35
RA	942	.	1	772110	0	G	C	consensus_score=221.3	frequency=1	major_base=C	major_cov=32/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/34
RA	943	.	1	775838	0	G	A	consensus_score=243.0	frequency=1	major_base=A	major_cov=41/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/29
RA	944	.	1	775868	0	A	G	consensus_score=206.1	frequency=1	major_base=G	major_cov=41/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/18
RA	945	.	1	775871	0	C	G	consensus_score=190.9	frequency=1	major_base=G	major_cov=41/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/18
RA	946	.	1	775877	0	C	T	consensus_score=215.2	frequency=1	major_base=T	major_cov=45/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/18
RA	947	.	1	775886	0	T	C	consensus_score=223.4	frequency=1	major_base=C	major_cov=45/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/21
RA	948	.	1	775916	0	T	C	consensus_score=230.4	frequency=1	major_base=C	major_cov=44/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/22
RA	949	.	1	775940	0	T	C	consensus_score=270.2	frequency=1	major_base=C	major_cov=56/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/24
RA	950	.	1	775952	0	C	T	consensus_score=278.3	frequency=1	major_base=T	major_cov=57/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/24
RA	951	.	1	775955	0	C	T	consensus_score=268.5	frequency=1	major_base=T	major_cov=57/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/24
RA	952	.	1	775967	0	A	G	consensus_score=278.3	frequency=1	major_base=G	major_cov=56/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/27
RA	953	.	1	775970	0	A	T	consensus_score=293.9	frequency=1	major_base=T	major_cov=56/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/27
RA	954	.	1	775982	0	A	G	consensus_score=307.8	frequency=1	major_base=G	major_cov=56/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/31
RA	955	.	1	775988	0	C	T	consensus_score=298.6	frequency=1	major_base=T	major_cov=57/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/31
RA	956	.	1	775992	0	T	C	consensus_score=301.5	frequency=1	major_base=C	major_cov=57/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/31
RA	957	.	1	775997	0	G	A	consensus_score=314.6	frequency=1	major_base=A	major_cov=57/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/32
RA	958	.	1	776003	0	G	A	consensus_score=294.1	frequency=1	major_base=A	major_cov=53/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/35
RA	959	.	1	776006	0	T	G	consensus_score=289.6	frequency=1	major_base=G	major_cov=53/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/35
RA	960	.	1	776016	0	C	T	consensus_score=290.4	frequency=1	major_base=T	major_cov=53/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/33
RA	961	.	1	776018	0	G	A	consensus_score=287.0	frequency=1	major_base=A	major_cov=53/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/33
RA	962	.	1	776021	0	T	G	bias_e_value=2173200	bias_p_value=1	consensus_score=297.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999726	major_base=G	major_cov=52/33	major_frequency=9.884e-01	minor_base=T	minor_cov=1/0	new_cov=52/33	polymorphism_frequency=9.884e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=53/33
RA	963	.	1	776051	0	T	C	consensus_score=305.2	frequency=1	major_base=C	major_cov=51/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/38
RA	964	.	1	776191	0	A	G	consensus_score=214.1	frequency=1	major_base=G	major_cov=28/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/36
RA	965	.	1	776222	0	C	T	consensus_score=259.7	frequency=1	major_base=T	major_cov=35/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/41
RA	966	.	1	776225	0	G	T	consensus_score=256.2	frequency=1	major_base=T	major_cov=35/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/41
RA	967	.	1	776243	0	C	T	consensus_score=283.4	frequency=1	major_base=T	major_cov=40/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/44
RA	968	.	1	776247	0	T	C	consensus_score=251.1	frequency=1	major_base=C	major_cov=36/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/38
RA	969	.	1	776258	0	T	C	consensus_score=275.0	frequency=1	major_base=C	major_cov=39/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/39
RA	970	.	1	776288	0	C	T	consensus_score=295.0	frequency=1	major_base=T	major_cov=43/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/44
RA	971	.	1	776297	0	C	T	consensus_score=311.7	frequency=1	major_base=T	major_cov=43/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/45
RA	972	.	1	776300	0	T	G	consensus_score=300.2	frequency=1	major_base=G	major_cov=43/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/45
RA	973	.	1	776309	0	G	A	consensus_score=286.2	frequency=1	major_base=A	major_cov=42/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/41
RA	974	.	1	776311	0	A	G	consensus_score=280.1	frequency=1	major_base=G	major_cov=42/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/41
RA	975	.	1	776316	0	C	T	consensus_score=277.5	frequency=1	major_base=T	major_cov=42/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/41
RA	976	.	1	776317	0	T	G	consensus_score=295.6	frequency=1	major_base=G	major_cov=42/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/41
RA	977	.	1	776360	0	A	C	consensus_score=360.7	frequency=1	major_base=C	major_cov=53/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/53
RA	978	.	1	776650	0	T	C	consensus_score=161.5	frequency=1	major_base=C	major_cov=23/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/26
RA	979	.	1	776662	0	T	G	consensus_score=123.8	frequency=1	major_base=G	major_cov=20/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/18
RA	980	.	1	776665	0	T	C	consensus_score=123.5	frequency=1	major_base=C	major_cov=20/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/18
RA	981	.	1	776668	0	C	T	consensus_score=125.7	frequency=1	major_base=T	major_cov=20/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/18
RA	982	.	1	776680	0	A	G	consensus_score=113.4	frequency=1	major_base=G	major_cov=19/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/15
RA	983	.	1	776686	0	C	T	consensus_score=47.9	frequency=1	major_base=T	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	984	.	1	776692	0	G	A	consensus_score=48.0	frequency=1	major_base=A	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	985	.	1	776693	0	T	C	consensus_score=52.7	frequency=1	major_base=C	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	986	.	1	776698	0	C	A	consensus_score=51.4	frequency=1	major_base=A	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	987	.	1	776701	0	A	G	consensus_score=47.0	frequency=1	major_base=G	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	988	.	1	776707	0	C	A	consensus_score=52.0	frequency=1	major_base=A	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	989	.	1	776710	0	A	G	consensus_score=49.5	frequency=1	major_base=G	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	990	.	1	776713	0	T	A	consensus_score=50.6	frequency=1	major_base=A	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	991	.	1	776716	0	G	T	consensus_score=48.2	frequency=1	major_base=T	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	992	.	1	776720	0	G	A	consensus_score=51.9	frequency=1	major_base=A	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	993	.	1	776722	0	A	C	consensus_score=48.3	frequency=1	major_base=C	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	994	.	1	776723	0	A	G	consensus_score=50.4	frequency=1	major_base=G	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	995	.	1	776734	0	C	T	consensus_score=48.3	frequency=1	major_base=T	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	996	.	1	776737	0	A	T	consensus_score=47.8	frequency=1	major_base=T	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	997	.	1	776740	0	G	A	consensus_score=47.7	frequency=1	major_base=A	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	998	.	1	776746	0	A	G	consensus_score=50.2	frequency=1	major_base=G	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	999	.	1	776747	0	T	C	consensus_score=53.2	frequency=1	major_base=C	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	1000	.	1	776749	0	A	G	consensus_score=51.2	frequency=1	major_base=G	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	1001	.	1	776751	0	A	C	consensus_score=51.9	frequency=1	major_base=C	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	1002	.	1	776752	0	G	A	consensus_score=49.3	frequency=1	major_base=A	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	1003	.	1	776756	0	C	G	consensus_score=51.3	frequency=1	major_base=G	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	1004	.	1	776764	0	A	T	consensus_score=59.1	frequency=1	major_base=T	major_cov=4/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/15
RA	1005	.	1	776767	0	T	G	consensus_score=60.3	frequency=1	major_base=G	major_cov=4/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/15
RA	1006	.	1	776776	0	A	G	consensus_score=79.0	frequency=1	major_base=G	major_cov=8/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/16
RA	1007	.	1	776779	0	T	C	consensus_score=78.9	frequency=1	major_base=C	major_cov=8/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/16
RA	1008	.	1	776780	0	G	A	consensus_score=80.0	frequency=1	major_base=A	major_cov=8/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/16
RA	1009	.	1	776794	0	T	C	consensus_score=102.2	frequency=1	major_base=C	major_cov=12/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/19
RA	1010	.	1	776800	0	C	T	consensus_score=97.4	frequency=1	major_base=T	major_cov=13/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/16
RA	1011	.	1	776803	0	T	C	consensus_score=96.5	frequency=1	major_base=C	major_cov=13/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/16
RA	1012	.	1	776815	0	C	T	consensus_score=93.1	frequency=1	major_base=T	major_cov=15/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/13
RA	1013	.	1	776818	0	T	A	consensus_score=92.2	frequency=1	major_base=A	major_cov=15/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/13
RA	1014	.	1	776830	0	G	A	consensus_score=124.1	frequency=1	major_base=A	major_cov=17/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/20
RA	1015	.	1	776839	0	A	G	consensus_score=127.5	frequency=1	major_base=G	major_cov=16/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/21
RA	1016	.	1	776842	0	C	A	consensus_score=127.0	frequency=1	major_base=A	major_cov=16/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/21
RA	1017	.	1	776857	0	A	G	consensus_score=146.3	frequency=1	major_base=G	major_cov=19/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/25
RA	1018	.	1	776869	0	C	T	consensus_score=172.2	frequency=1	major_base=T	major_cov=23/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/26
RA	1019	.	1	776878	0	A	G	consensus_score=171.0	frequency=1	major_base=G	major_cov=24/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/27
RA	1020	.	1	776887	0	A	G	consensus_score=181.5	frequency=1	major_base=G	major_cov=25/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/29
RA	1021	.	1	776888	0	T	C	consensus_score=186.0	frequency=1	major_base=C	major_cov=25/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/29
RA	1022	.	1	776914	0	A	G	consensus_score=249.4	frequency=1	major_base=G	major_cov=37/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/37
RA	1023	.	1	776917	0	A	G	consensus_score=249.0	frequency=1	major_base=G	major_cov=37/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/37
RA	1024	.	1	776947	0	A	T	consensus_score=268.6	frequency=1	major_base=T	major_cov=40/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/39
RA	1025	.	1	777007	0	A	G	consensus_score=295.5	frequency=1	major_base=G	major_cov=44/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/40
RA	1026	.	1	777019	0	G	A	consensus_score=272.3	frequency=1	major_base=A	major_cov=40/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/40
RA	1027	.	1	777064	0	T	C	consensus_score=262.0	frequency=1	major_base=C	major_cov=39/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/38
RA	1028	.	1	777072	0	C	T	consensus_score=246.6	frequency=1	major_base=T	major_cov=38/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/34
RA	1029	.	1	777079	0	T	C	consensus_score=222.4	frequency=1	major_base=C	major_cov=36/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/28
RA	1030	.	1	777082	0	C	T	consensus_score=220.1	frequency=1	major_base=T	major_cov=36/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/28
RA	1031	.	1	777092	0	C	T	consensus_score=237.3	frequency=1	major_base=T	major_cov=39/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/29
RA	1032	.	1	777097	0	T	C	consensus_score=238.0	frequency=1	major_base=C	major_cov=40/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/29
RA	1033	.	1	777103	0	C	T	consensus_score=239.1	frequency=1	major_base=T	major_cov=40/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/29
RA	1034	.	1	777106	0	A	C	consensus_score=233.3	frequency=1	major_base=C	major_cov=40/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/29
RA	1035	.	1	777115	0	C	T	consensus_score=234.5	frequency=1	major_base=T	major_cov=40/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/30
RA	1036	.	1	777121	0	G	T	consensus_score=245.4	frequency=1	major_base=T	major_cov=42/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/30
RA	1037	.	1	777133	0	G	T	consensus_score=237.7	frequency=1	major_base=T	major_cov=41/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/28
RA	1038	.	1	777136	0	A	G	consensus_score=232.8	frequency=1	major_base=G	major_cov=41/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/28
RA	1039	.	1	777157	0	G	A	consensus_score=211.6	frequency=1	major_base=A	major_cov=37/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/27
RA	1040	.	1	777163	0	C	T	consensus_score=222.3	frequency=1	major_base=T	major_cov=36/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/28
RA	1041	.	1	777169	0	G	C	consensus_score=217.8	frequency=1	major_base=C	major_cov=36/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/28
RA	1042	.	1	777199	0	A	G	consensus_score=240.0	frequency=1	major_base=G	major_cov=40/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/29
RA	1043	.	1	777205	0	C	T	consensus_score=248.5	frequency=1	major_base=T	major_cov=40/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/31
RA	1044	.	1	777238	0	C	T	bias_e_value=2173200	bias_p_value=1	consensus_score=269.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=45/34	major_frequency=9.875e-01	minor_base=C	minor_cov=1/0	new_cov=45/34	polymorphism_frequency=9.875e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=46/34
RA	1045	.	1	777259	0	T	C	consensus_score=286.5	frequency=1	major_base=C	major_cov=48/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/35
RA	1046	.	1	777274	0	T	C	consensus_score=303.9	frequency=1	major_base=C	major_cov=48/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/39
RA	1047	.	1	777279	0	C	T	bias_e_value=2172740	bias_p_value=0.999789	consensus_score=295.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.979528	major_base=T	major_cov=49/39	major_frequency=9.888e-01	minor_base=C	minor_cov=1/0	new_cov=49/39	polymorphism_frequency=9.888e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=1/0	total_cov=50/39
RA	1048	.	1	777317	0	C	T	consensus_score=319.7	frequency=1	major_base=T	major_cov=46/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/45
RA	1049	.	1	777352	0	C	T	consensus_score=253.3	frequency=1	major_base=T	major_cov=34/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/40
RA	1050	.	1	777355	0	G	A	consensus_score=255.4	frequency=1	major_base=A	major_cov=34/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/40
RA	1051	.	1	777359	0	C	A	consensus_score=258.7	frequency=1	major_base=A	major_cov=34/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/40
RA	1052	.	1	777360	0	G	A	consensus_score=260.0	frequency=1	major_base=A	major_cov=34/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/40
RA	1053	.	1	777391	0	A	G	consensus_score=281.9	frequency=1	major_base=G	major_cov=35/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/45
RA	1054	.	1	777484	0	G	A	consensus_score=234.2	frequency=1	major_base=A	major_cov=26/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/42
RA	1055	.	1	777485	0	G	A	consensus_score=228.2	frequency=1	major_base=A	major_cov=26/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/42
RA	1056	.	1	777511	0	C	A	consensus_score=238.7	frequency=1	major_base=A	major_cov=30/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/40
RA	1057	.	1	777520	0	A	G	consensus_score=240.9	frequency=1	major_base=G	major_cov=27/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/42
RA	1058	.	1	777529	0	G	C	bias_e_value=2173200	bias_p_value=1	consensus_score=235.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=29/41	major_frequency=9.859e-01	minor_base=G	minor_cov=0/1	new_cov=29/41	polymorphism_frequency=9.859e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=29/42
RA	1059	.	1	777535	0	G	T	consensus_score=244.8	frequency=1	major_base=T	major_cov=29/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/42
RA	1060	.	1	777559	0	A	G	consensus_score=265.6	frequency=1	major_base=G	major_cov=38/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/41
RA	1061	.	1	777565	0	A	G	consensus_score=283.8	frequency=1	major_base=G	major_cov=41/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/43
RA	1062	.	1	777571	0	T	C	consensus_score=286.6	frequency=1	major_base=C	major_cov=42/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/43
RA	1063	.	1	777601	0	C	T	consensus_score=287.9	frequency=1	major_base=T	major_cov=40/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/45
RA	1064	.	1	777703	0	C	A	bias_e_value=2173200	bias_p_value=1	consensus_score=367.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=51/57	major_frequency=9.908e-01	minor_base=C	minor_cov=0/1	new_cov=51/57	polymorphism_frequency=9.908e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=51/58
RA	1065	.	1	777712	0	T	C	consensus_score=385.3	frequency=1	major_base=C	major_cov=51/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/58
RA	1066	.	1	777724	0	G	A	consensus_score=367.7	frequency=1	major_base=A	major_cov=49/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/55
RA	1067	.	1	777739	0	G	A	consensus_score=332.5	frequency=1	major_base=A	major_cov=46/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/52
RA	1068	.	1	777775	0	C	T	consensus_score=292.0	frequency=1	major_base=T	major_cov=43/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/40
RA	1069	.	1	777805	0	C	T	consensus_score=255.8	frequency=1	major_base=T	major_cov=36/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/39
RA	1070	.	1	777823	0	G	A	consensus_score=235.0	frequency=1	major_base=A	major_cov=32/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/35
RA	1071	.	1	777826	0	G	A	bias_e_value=1816450	bias_p_value=0.835839	consensus_score=218.9	fisher_strand_p_value=0.484848	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=31/34	major_frequency=9.848e-01	minor_base=C	minor_cov=1/0	new_cov=31/34	polymorphism_frequency=9.848e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/35
RA	1072	.	1	777889	0	T	C	consensus_score=81.1	frequency=1	major_base=C	major_cov=15/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/10
RA	1073	.	1	777892	0	G	A	consensus_score=81.0	frequency=1	major_base=A	major_cov=15/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/10
RA	1074	.	1	777895	0	A	G	consensus_score=79.5	frequency=1	major_base=G	major_cov=15/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/10
RA	1075	.	1	777898	0	A	T	consensus_score=81.6	frequency=1	major_base=T	major_cov=15/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/10
RA	1076	.	1	777899	0	C	A	consensus_score=83.0	frequency=1	major_base=A	major_cov=15/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/10
RA	1077	.	1	777901	0	G	A	consensus_score=79.9	frequency=1	major_base=A	major_cov=15/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/10
RA	1078	.	1	777910	0	A	G	consensus_score=99.1	frequency=1	major_base=G	major_cov=17/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/12
RA	1079	.	1	777913	0	G	A	consensus_score=94.6	frequency=1	major_base=A	major_cov=17/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/12
RA	1080	.	1	777916	0	T	G	consensus_score=97.8	frequency=1	major_base=G	major_cov=17/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/12
RA	1081	.	1	777919	0	C	T	consensus_score=92.5	frequency=1	major_base=T	major_cov=17/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/12
RA	1082	.	1	777922	0	T	C	consensus_score=97.7	frequency=1	major_base=C	major_cov=17/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/12
RA	1083	.	1	777928	0	C	T	consensus_score=135.2	frequency=1	major_base=T	major_cov=23/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/18
RA	1084	.	1	777940	0	T	A	consensus_score=122.5	frequency=1	major_base=A	major_cov=20/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/18
RA	1085	.	1	777947	0	T	C	consensus_score=127.7	frequency=1	major_base=C	major_cov=20/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/20
RA	1086	.	1	777949	0	G	C	consensus_score=132.6	frequency=1	major_base=C	major_cov=20/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/20
RA	1087	.	1	777958	0	T	A	consensus_score=135.3	frequency=1	major_base=A	major_cov=20/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/20
RA	1088	.	1	777961	0	C	T	consensus_score=136.5	frequency=1	major_base=T	major_cov=20/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/20
RA	1089	.	1	777970	0	A	G	consensus_score=133.1	frequency=1	major_base=G	major_cov=19/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/20
RA	1090	.	1	777973	0	C	A	consensus_score=133.1	frequency=1	major_base=A	major_cov=19/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/20
RA	1091	.	1	777977	0	C	T	consensus_score=129.0	frequency=1	major_base=T	major_cov=19/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/20
RA	1092	.	1	777982	0	C	T	consensus_score=120.9	frequency=1	major_base=T	major_cov=18/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/19
RA	1093	.	1	777985	0	G	A	consensus_score=121.7	frequency=1	major_base=A	major_cov=18/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/19
RA	1094	.	1	777997	0	T	A	consensus_score=112.6	frequency=1	major_base=A	major_cov=15/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/18
RA	1095	.	1	778002	0	C	A	consensus_score=103.7	frequency=1	major_base=A	major_cov=13/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/18
RA	1096	.	1	778003	0	G	A	consensus_score=100.6	frequency=1	major_base=A	major_cov=13/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/18
RA	1097	.	1	778007	0	C	T	consensus_score=100.1	frequency=1	major_base=T	major_cov=13/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/18
RA	1098	.	1	778018	0	C	T	consensus_score=101.8	frequency=1	major_base=T	major_cov=13/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/18
RA	1099	.	1	778030	0	T	C	consensus_score=83.3	frequency=1	major_base=C	major_cov=12/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/15
RA	1100	.	1	778036	0	C	G	consensus_score=87.5	frequency=1	major_base=G	major_cov=11/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/15
RA	1101	.	1	778039	0	C	A	consensus_score=83.7	frequency=1	major_base=A	major_cov=11/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/15
RA	1102	.	1	778041	0	C	T	consensus_score=82.4	frequency=1	major_base=T	major_cov=11/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/15
RA	1103	.	1	778048	0	C	A	consensus_score=83.6	frequency=1	major_base=A	major_cov=11/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/15
RA	1104	.	1	778054	0	A	.	consensus_score=93.4	frequency=1	major_base=.	major_cov=9/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/13
RA	1105	.	1	778055	0	G	.	consensus_score=93.4	frequency=1	major_base=.	major_cov=9/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/13
RA	1106	.	1	778056	0	T	.	consensus_score=93.4	frequency=1	major_base=.	major_cov=9/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/13
RA	1107	.	1	778057	0	C	.	consensus_score=93.4	frequency=1	major_base=.	major_cov=9/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/13
RA	1108	.	1	778058	0	A	.	consensus_score=93.4	frequency=1	major_base=.	major_cov=9/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/13
RA	1109	.	1	778059	0	G	.	consensus_score=93.4	frequency=1	major_base=.	major_cov=9/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/13
RA	1110	.	1	778060	0	T	.	consensus_score=93.4	frequency=1	major_base=.	major_cov=9/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/13
RA	1111	.	1	778061	0	T	.	consensus_score=93.4	frequency=1	major_base=.	major_cov=9/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/13
RA	1112	.	1	778062	0	C	.	consensus_score=93.4	frequency=1	major_base=.	major_cov=9/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/13
RA	1113	.	1	778063	0	T	.	consensus_score=93.4	frequency=1	major_base=.	major_cov=9/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/13
RA	1114	.	1	778064	0	A	.	consensus_score=93.4	frequency=1	major_base=.	major_cov=9/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/13
RA	1115	.	1	778065	0	T	.	consensus_score=93.4	frequency=1	major_base=.	major_cov=9/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/13
RA	1116	.	1	778109	0	T	A	consensus_score=89.3	frequency=1	major_base=A	major_cov=13/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/15
RA	1117	.	1	778125	0	C	T	consensus_score=100.7	frequency=1	major_base=T	major_cov=17/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/14
RA	1118	.	1	778132	0	C	A	bias_e_value=306066	bias_p_value=0.140836	consensus_score=65.8	fisher_strand_p_value=0.0316206	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=15/5	major_frequency=8.696e-01	minor_base=C	minor_cov=0/3	new_cov=15/5	polymorphism_frequency=8.696e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=0/3	total_cov=15/8
RA	1119	.	1	778133	0	T	C	consensus_score=72.7	frequency=1	major_base=C	major_cov=15/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/8
RA	1120	.	1	778137	0	C	T	consensus_score=76.0	frequency=1	major_base=T	major_cov=15/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/8
RA	1121	.	1	778141	0	T	C	bias_e_value=448228	bias_p_value=0.206252	consensus_score=60.0	fisher_strand_p_value=0.0521739	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=15/7	major_frequency=8.800e-01	minor_base=T	minor_cov=0/3	new_cov=15/7	polymorphism_frequency=8.800e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=0/3	total_cov=15/10
RA	1122	.	1	778158	0	A	G	consensus_score=104.1	frequency=1	major_base=G	major_cov=23/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/10
RA	1123	.	1	778168	0	G	A	consensus_score=76.3	frequency=1	major_base=A	major_cov=20/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/8
RA	1124	.	1	778171	0	G	A	consensus_score=82.9	frequency=1	major_base=A	major_cov=20/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/8
RA	1125	.	1	778180	0	A	G	consensus_score=93.9	frequency=1	major_base=G	major_cov=19/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/10
RA	1126	.	1	778187	0	A	G	consensus_score=95.1	frequency=1	major_base=G	major_cov=18/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/10
RA	1127	.	1	778190	0	G	A	consensus_score=91.2	frequency=1	major_base=A	major_cov=18/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/10
RA	1128	.	1	778198	0	G	C	consensus_score=103.8	frequency=1	major_base=C	major_cov=19/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/12
RA	1129	.	1	778201	0	G	A	consensus_score=106.9	frequency=1	major_base=A	major_cov=19/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/12
RA	1130	.	1	778203	0	C	T	consensus_score=99.6	frequency=1	major_base=T	major_cov=19/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/12
RA	1131	.	1	778208	0	T	C	consensus_score=130.9	frequency=1	major_base=C	major_cov=23/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/15
RA	1132	.	1	778224	0	C	T	consensus_score=129.4	frequency=1	major_base=T	major_cov=23/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/17
RA	1133	.	1	778447	0	T	C	consensus_score=196.9	frequency=1	major_base=C	major_cov=35/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/24
RA	1134	.	1	778453	0	T	C	consensus_score=203.7	frequency=1	major_base=C	major_cov=35/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/24
RA	1135	.	1	778459	0	T	C	consensus_score=149.3	frequency=1	major_base=C	major_cov=27/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/16
RA	1136	.	1	778463	0	T	C	consensus_score=144.6	frequency=1	major_base=C	major_cov=27/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/16
RA	1137	.	1	778465	0	T	C	consensus_score=141.6	frequency=1	major_base=C	major_cov=27/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/16
RA	1138	.	1	778467	0	A	C	consensus_score=147.3	frequency=1	major_base=C	major_cov=27/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/16
RA	1139	.	1	778468	0	G	A	consensus_score=149.9	frequency=1	major_base=A	major_cov=27/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/16
RA	1140	.	1	778475	0	C	T	consensus_score=159.6	frequency=1	major_base=T	major_cov=30/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/17
RA	1141	.	1	778477	0	A	G	consensus_score=161.5	frequency=1	major_base=G	major_cov=30/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/17
RA	1142	.	1	778492	0	C	T	consensus_score=163.4	frequency=1	major_base=T	major_cov=29/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/20
RA	1143	.	1	778498	0	A	T	bias_e_value=1720520	bias_p_value=0.791699	consensus_score=162.6	fisher_strand_p_value=0.428571	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=28/20	major_frequency=9.796e-01	minor_base=A	minor_cov=0/1	new_cov=28/20	polymorphism_frequency=9.796e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=28/21
RA	1144	.	1	778507	0	G	A	consensus_score=164.1	frequency=1	major_base=A	major_cov=29/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/20
RA	1145	.	1	778509	0	A	G	consensus_score=168.6	frequency=1	major_base=G	major_cov=29/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/20
RA	1146	.	1	778541	0	T	C	consensus_score=138.1	frequency=1	major_base=C	major_cov=22/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/20
RA	1147	.	1	778543	0	G	C	consensus_score=143.1	frequency=1	major_base=C	major_cov=22/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/20
RA	1148	.	1	778547	0	A	G	consensus_score=139.4	frequency=1	major_base=G	major_cov=22/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/20
RA	1149	.	1	778550	0	C	A	consensus_score=138.1	frequency=1	major_base=A	major_cov=22/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/20
RA	1150	.	1	778552	0	T	G	consensus_score=143.7	frequency=1	major_base=G	major_cov=22/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/20
RA	1151	.	1	778559	0	T	C	consensus_score=144.6	frequency=1	major_base=C	major_cov=23/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/21
RA	1152	.	1	778577	0	A	G	consensus_score=124.1	frequency=1	major_base=G	major_cov=22/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/15
RA	1153	.	1	778578	0	A	G	consensus_score=119.4	frequency=1	major_base=G	major_cov=22/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/15
RA	1154	.	1	778583	0	C	T	consensus_score=117.7	frequency=1	major_base=T	major_cov=22/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/16
RA	1155	.	1	778589	0	G	T	consensus_score=122.9	frequency=1	major_base=T	major_cov=21/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/16
RA	1156	.	1	778592	0	G	A	consensus_score=118.8	frequency=1	major_base=A	major_cov=21/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/16
RA	1157	.	1	778613	0	C	G	bias_e_value=1816450	bias_p_value=0.835839	consensus_score=89.0	fisher_strand_p_value=0.484848	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=17/15	major_frequency=9.412e-01	minor_base=A	minor_cov=0/2	new_cov=17/15	polymorphism_frequency=9.412e-01	polymorphism_score=-5.5	prediction=consensus	ref_cov=0/0	total_cov=17/17
RA	1158	.	1	778622	0	C	T	consensus_score=106.5	frequency=1	major_base=T	major_cov=16/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/17
RA	1159	.	1	778751	0	C	T	consensus_score=63.7	frequency=1	major_base=T	major_cov=10/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/9
RA	1160	.	1	778761	0	C	T	consensus_score=43.7	frequency=1	major_base=T	major_cov=10/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/4
RA	1161	.	1	778763	0	A	G	consensus_score=44.9	frequency=1	major_base=G	major_cov=10/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/4
RA	1162	.	1	778766	0	C	T	consensus_score=41.9	frequency=1	major_base=T	major_cov=10/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/4
RA	1163	.	1	778769	0	G	A	consensus_score=42.0	frequency=1	major_base=A	major_cov=10/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/4
RA	1164	.	1	778770	0	G	A	consensus_score=42.0	frequency=1	major_base=A	major_cov=10/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/4
RA	1165	.	1	778773	0	G	T	consensus_score=42.8	frequency=1	major_base=T	major_cov=10/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/4
RA	1166	.	1	778777	0	G	A	consensus_score=41.4	frequency=1	major_base=A	major_cov=10/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/4
RA	1167	.	1	778778	0	T	C	consensus_score=43.1	frequency=1	major_base=C	major_cov=10/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/4
RA	1168	.	1	778781	0	T	G	consensus_score=42.1	frequency=1	major_base=G	major_cov=10/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/4
RA	1169	.	1	778784	0	T	C	consensus_score=42.6	frequency=1	major_base=C	major_cov=10/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/4
RA	1170	.	1	778787	0	A	T	consensus_score=42.1	frequency=1	major_base=T	major_cov=10/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/4
RA	1171	.	1	778788	0	G	A	consensus_score=40.9	frequency=1	major_base=A	major_cov=10/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/4
RA	1172	.	1	778790	0	G	T	consensus_score=41.9	frequency=1	major_base=T	major_cov=10/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/4
RA	1173	.	1	778793	0	C	T	consensus_score=42.1	frequency=1	major_base=T	major_cov=10/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/4
RA	1174	.	1	778796	0	G	A	consensus_score=41.3	frequency=1	major_base=A	major_cov=10/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/4
RA	1175	.	1	778799	0	T	A	consensus_score=42.4	frequency=1	major_base=A	major_cov=10/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/4
RA	1176	.	1	778805	0	T	G	consensus_score=45.2	frequency=1	major_base=G	major_cov=10/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/4
RA	1177	.	1	778807	0	C	G	consensus_score=41.9	frequency=1	major_base=G	major_cov=10/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/4
RA	1178	.	1	778808	0	A	C	consensus_score=43.7	frequency=1	major_base=C	major_cov=10/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/4
RA	1179	.	1	778829	0	C	T	consensus_score=54.4	frequency=1	major_base=T	major_cov=11/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/6
RA	1180	.	1	778837	0	A	G	consensus_score=52.7	frequency=1	major_base=G	major_cov=11/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/6
RA	1181	.	1	778844	0	A	G	consensus_score=55.8	frequency=1	major_base=G	major_cov=11/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/6
RA	1182	.	1	778863	0	C	T	consensus_score=39.8	frequency=1	major_base=T	major_cov=6/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/7
RA	1183	.	1	778865	0	C	T	consensus_score=39.6	frequency=1	major_base=T	major_cov=6/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/7
RA	1184	.	1	778867	0	T	C	consensus_score=40.5	frequency=1	major_base=C	major_cov=6/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/7
RA	1185	.	1	778868	0	A	T	consensus_score=37.5	frequency=1	major_base=T	major_cov=6/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/7
RA	1186	.	1	778872	0	A	G	consensus_score=40.7	frequency=1	major_base=G	major_cov=6/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/7
RA	1187	.	1	778888	0	T	A	consensus_score=40.0	frequency=1	major_base=A	major_cov=6/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/7
RA	1188	.	1	778889	0	G	T	consensus_score=39.4	frequency=1	major_base=T	major_cov=6/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/7
RA	1189	.	1	778890	0	A	T	consensus_score=39.9	frequency=1	major_base=T	major_cov=6/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/7
RA	1190	.	1	778898	0	G	A	consensus_score=43.2	frequency=1	major_base=A	major_cov=6/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/8
RA	1191	.	1	778907	1	.	T	consensus_score=54.1	frequency=1	major_base=T	major_cov=7/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/10
RA	1192	.	1	778925	0	A	C	consensus_score=126.3	frequency=1	major_base=C	major_cov=20/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/18
RA	1193	.	1	778929	0	A	C	consensus_score=122.2	frequency=1	major_base=C	major_cov=20/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/17
RA	1194	.	1	778948	0	A	C	consensus_score=136.3	frequency=1	major_base=C	major_cov=19/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/23
RA	1195	.	1	778960	0	C	T	consensus_score=140.6	frequency=1	major_base=T	major_cov=18/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/25
RA	1196	.	1	778985	0	C	T	consensus_score=189.7	frequency=1	major_base=T	major_cov=26/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/30
RA	1197	.	1	779020	0	T	C	consensus_score=241.4	frequency=1	major_base=C	major_cov=30/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/39
RA	1198	.	1	779110	0	G	A	consensus_score=287.6	frequency=1	major_base=A	major_cov=42/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/43
RA	1199	.	1	779121	0	C	T	consensus_score=282.7	frequency=1	major_base=T	major_cov=41/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/42
RA	1200	.	1	779126	0	C	T	consensus_score=283.9	frequency=1	major_base=T	major_cov=41/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/42
RA	1201	.	1	779152	0	A	G	consensus_score=234.5	frequency=1	major_base=G	major_cov=35/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/32
RA	1202	.	1	779173	0	T	C	consensus_score=193.0	frequency=1	major_base=C	major_cov=25/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/30
RA	1203	.	1	779176	0	T	C	consensus_score=184.2	frequency=1	major_base=C	major_cov=25/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/30
RA	1204	.	1	779189	0	A	G	consensus_score=189.0	frequency=1	major_base=G	major_cov=26/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/30
RA	1205	.	1	779197	0	T	C	consensus_score=189.2	frequency=1	major_base=C	major_cov=25/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/30
RA	1206	.	1	779211	0	A	G	consensus_score=177.0	frequency=1	major_base=G	major_cov=25/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/27
RA	1207	.	1	779224	0	C	T	consensus_score=165.4	frequency=1	major_base=T	major_cov=20/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/29
RA	1208	.	1	779235	0	T	C	consensus_score=155.4	frequency=1	major_base=C	major_cov=18/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/27
RA	1209	.	1	779250	0	T	C	consensus_score=133.0	frequency=1	major_base=C	major_cov=17/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/22
RA	1210	.	1	779262	0	G	A	consensus_score=140.5	frequency=1	major_base=A	major_cov=20/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/22
RA	1211	.	1	779268	0	G	A	consensus_score=133.3	frequency=1	major_base=A	major_cov=19/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/21
RA	1212	.	1	779291	0	G	A	consensus_score=110.9	frequency=1	major_base=A	major_cov=17/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/17
RA	1213	.	1	779295	0	T	A	consensus_score=98.6	frequency=1	major_base=A	major_cov=15/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/14
RA	1214	.	1	779304	0	T	C	consensus_score=87.3	frequency=1	major_base=C	major_cov=13/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/13
RA	1215	.	1	779307	0	C	T	consensus_score=84.4	frequency=1	major_base=T	major_cov=13/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/13
RA	1216	.	1	779308	0	G	A	consensus_score=84.4	frequency=1	major_base=A	major_cov=13/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/13
RA	1217	.	1	779322	0	C	T	consensus_score=74.7	frequency=1	major_base=T	major_cov=11/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/13
RA	1218	.	1	779331	0	T	C	consensus_score=73.8	frequency=1	major_base=C	major_cov=11/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/12
RA	1219	.	1	779334	0	T	C	consensus_score=74.1	frequency=1	major_base=C	major_cov=11/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/12
RA	1220	.	1	779340	0	G	A	consensus_score=71.5	frequency=1	major_base=A	major_cov=11/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/12
RA	1221	.	1	779346	0	A	G	consensus_score=73.7	frequency=1	major_base=G	major_cov=11/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/12
RA	1222	.	1	779352	0	A	G	consensus_score=76.8	frequency=1	major_base=G	major_cov=11/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/12
RA	1223	.	1	779355	0	A	G	consensus_score=74.1	frequency=1	major_base=G	major_cov=11/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/12
RA	1224	.	1	779359	0	T	.	consensus_score=97.6	frequency=1	major_base=.	major_cov=11/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/12
RA	1225	.	1	779360	0	T	G	consensus_score=73.8	frequency=1	major_base=G	major_cov=11/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/12
RA	1226	.	1	779364	1	.	T	consensus_score=72.8	frequency=1	major_base=T	major_cov=11/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/12
RA	1227	.	1	779367	0	T	C	consensus_score=77.0	frequency=1	major_base=C	major_cov=11/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/12
RA	1228	.	1	779368	0	G	A	consensus_score=72.9	frequency=1	major_base=A	major_cov=11/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/12
RA	1229	.	1	779375	0	A	G	consensus_score=90.8	frequency=1	major_base=G	major_cov=13/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/14
RA	1230	.	1	779472	0	A	G	consensus_score=40.5	frequency=1	major_base=G	major_cov=4/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/9
RA	1231	.	1	779475	0	C	T	consensus_score=38.7	frequency=1	major_base=T	major_cov=4/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/9
RA	1232	.	1	779483	0	T	C	consensus_score=37.4	frequency=1	major_base=C	major_cov=4/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/8
RA	1233	.	1	779499	0	T	C	consensus_score=38.0	frequency=1	major_base=C	major_cov=3/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/10
RA	1234	.	1	779539	0	T	C	consensus_score=50.6	frequency=1	major_base=C	major_cov=5/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/11
RA	1235	.	1	779605	0	C	T	consensus_score=89.6	frequency=1	major_base=T	major_cov=11/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/17
RA	1236	.	1	779606	0	T	G	consensus_score=95.6	frequency=1	major_base=G	major_cov=11/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/17
RA	1237	.	1	779608	0	T	C	consensus_score=95.8	frequency=1	major_base=C	major_cov=11/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/17
RA	1238	.	1	779617	0	C	T	consensus_score=85.9	frequency=1	major_base=T	major_cov=10/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/17
RA	1239	.	1	779641	0	T	C	consensus_score=73.4	deleted=1	frequency=1	major_base=C	major_cov=8/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/14
RA	1240	.	1	779645	0	A	C	consensus_score=68.9	deleted=1	frequency=1	major_base=C	major_cov=8/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/13
RA	1241	.	1	779647	0	T	A	consensus_score=67.1	deleted=1	frequency=1	major_base=A	major_cov=8/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/13
RA	1242	.	1	779648	0	A	C	consensus_score=69.8	deleted=1	frequency=1	major_base=C	major_cov=8/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/13
RA	1243	.	1	779651	0	C	A	consensus_score=66.6	deleted=1	frequency=1	major_base=A	major_cov=8/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/13
RA	1244	.	1	779669	0	A	C	consensus_score=65.6	deleted=1	frequency=1	major_base=C	major_cov=7/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/13
RA	1245	.	1	779683	0	A	C	consensus_score=45.6	deleted=1	frequency=1	major_base=C	major_cov=6/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/9
RA	1246	.	1	779686	1	.	A	bias_e_value=2173200	bias_p_value=1	consensus_score=35.6	deleted=1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=5/7	major_frequency=8.000e-01	minor_base=.	minor_cov=1/2	new_cov=5/7	polymorphism_frequency=8.000e-01	polymorphism_score=5.2	prediction=consensus	ref_cov=1/2	total_cov=6/9
RA	1247	.	1	779686	2	.	C	bias_e_value=2173200	bias_p_value=1	consensus_score=36.4	deleted=1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=5/7	major_frequency=8.000e-01	minor_base=.	minor_cov=1/2	new_cov=5/7	polymorphism_frequency=8.000e-01	polymorphism_score=6.6	prediction=consensus	ref_cov=1/2	total_cov=6/9
RA	1248	.	1	779686	3	.	T	bias_e_value=2173200	bias_p_value=1	consensus_score=36.3	deleted=1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=5/7	major_frequency=8.000e-01	minor_base=.	minor_cov=1/2	new_cov=5/7	polymorphism_frequency=8.000e-01	polymorphism_score=5.1	prediction=consensus	ref_cov=1/2	total_cov=6/9
RA	1249	.	1	779686	4	.	G	bias_e_value=2173200	bias_p_value=1	consensus_score=36.0	deleted=1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=5/7	major_frequency=8.000e-01	minor_base=.	minor_cov=1/2	new_cov=5/7	polymorphism_frequency=8.000e-01	polymorphism_score=6.1	prediction=consensus	ref_cov=1/2	total_cov=6/9
RA	1250	.	1	779686	5	.	G	bias_e_value=2173200	bias_p_value=1	consensus_score=36.7	deleted=1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=5/7	major_frequency=8.000e-01	minor_base=.	minor_cov=1/2	new_cov=5/7	polymorphism_frequency=8.000e-01	polymorphism_score=6.1	prediction=consensus	ref_cov=1/2	total_cov=6/9
RA	1251	.	1	779686	6	.	C	bias_e_value=2173200	bias_p_value=1	consensus_score=36.5	deleted=1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=5/7	major_frequency=8.000e-01	minor_base=.	minor_cov=1/2	new_cov=5/7	polymorphism_frequency=8.000e-01	polymorphism_score=6.6	prediction=consensus	ref_cov=1/2	total_cov=6/9
RA	1252	.	1	779686	7	.	A	bias_e_value=1954850	bias_p_value=0.899524	consensus_score=38.9	deleted=1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.586646	major_base=A	major_cov=5/7	major_frequency=8.000e-01	minor_base=.	minor_cov=1/2	new_cov=5/7	polymorphism_frequency=8.000e-01	polymorphism_score=5.2	prediction=consensus	ref_cov=1/2	total_cov=6/9
RA	1253	.	1	779686	8	.	G	bias_e_value=1954850	bias_p_value=0.899524	consensus_score=34.5	deleted=1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.586646	major_base=G	major_cov=5/7	major_frequency=8.000e-01	minor_base=.	minor_cov=1/2	new_cov=5/7	polymorphism_frequency=8.000e-01	polymorphism_score=6.1	prediction=consensus	ref_cov=1/2	total_cov=6/9
RA	1254	.	1	779696	0	T	C	consensus_score=37.9	deleted=1	frequency=1	major_base=C	major_cov=5/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/7
RA	1255	.	1	779699	0	C	T	consensus_score=37.4	deleted=1	frequency=1	major_base=T	major_cov=5/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/7
RA	1256	.	1	779705	0	A	G	consensus_score=35.7	deleted=1	frequency=1	major_base=G	major_cov=5/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/7
RA	1257	.	1	779714	0	T	C	consensus_score=37.9	deleted=1	frequency=1	major_base=C	major_cov=5/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/7
RA	1258	.	1	779716	0	A	G	consensus_score=35.9	deleted=1	frequency=1	major_base=G	major_cov=5/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/7
RA	1259	.	1	779717	0	A	G	consensus_score=35.7	deleted=1	frequency=1	major_base=G	major_cov=5/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/7
RA	1260	.	1	779783	0	A	G	bias_e_value=2173070	bias_p_value=0.99994	consensus_score=34.4	deleted=1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.989071	major_base=G	major_cov=10/3	major_frequency=9.286e-01	minor_base=A	minor_cov=1/0	new_cov=10/3	polymorphism_frequency=9.286e-01	polymorphism_score=-3.2	prediction=consensus	ref_cov=1/0	total_cov=11/3
RA	1261	.	1	779792	0	T	C	bias_e_value=2165660	bias_p_value=0.99653	consensus_score=39.9	deleted=1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.917856	major_base=C	major_cov=11/3	major_frequency=9.333e-01	minor_base=T	minor_cov=1/0	new_cov=11/3	polymorphism_frequency=9.333e-01	polymorphism_score=-3.3	prediction=consensus	ref_cov=1/0	total_cov=12/3
RA	1262	.	1	779801	0	C	T	bias_e_value=2034550	bias_p_value=0.9362	consensus_score=43.2	deleted=1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.664757	major_base=T	major_cov=12/3	major_frequency=9.375e-01	minor_base=C	minor_cov=1/0	new_cov=12/3	polymorphism_frequency=9.375e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=1/0	total_cov=13/3
RA	1263	.	1	779807	0	C	T	bias_e_value=2121700	bias_p_value=0.9763	consensus_score=48.3	deleted=1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.790338	major_base=T	major_cov=13/4	major_frequency=9.444e-01	minor_base=C	minor_cov=1/0	new_cov=13/4	polymorphism_frequency=9.444e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=1/0	total_cov=14/4
RA	1264	.	1	779810	0	T	A	consensus_score=55.2	deleted=1	frequency=1	major_base=A	major_cov=14/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/4
RA	1265	.	1	779816	0	T	C	bias_e_value=1961300	bias_p_value=0.902491	consensus_score=63.5	deleted=1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.59226	major_base=C	major_cov=14/7	major_frequency=9.545e-01	minor_base=T	minor_cov=1/0	new_cov=14/7	polymorphism_frequency=9.545e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=1/0	total_cov=15/7
RA	1266	.	1	779819	0	A	G	consensus_score=74.1	deleted=1	frequency=1	major_base=G	major_cov=15/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/7
RA	1267	.	1	779828	0	T	C	bias_e_value=2106900	bias_p_value=0.969492	consensus_score=74.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.763379	major_base=C	major_cov=15/9	major_frequency=9.600e-01	minor_base=T	minor_cov=1/0	new_cov=15/9	polymorphism_frequency=9.600e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=1/0	total_cov=16/9
RA	1268	.	1	779831	0	C	T	bias_e_value=1796460	bias_p_value=0.826641	consensus_score=73.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.472367	major_base=T	major_cov=15/9	major_frequency=9.600e-01	minor_base=C	minor_cov=1/0	new_cov=15/9	polymorphism_frequency=9.600e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=1/0	total_cov=16/9
RA	1269	.	1	779840	0	T	C	consensus_score=79.7	frequency=1	major_base=C	major_cov=16/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/9
RA	1270	.	1	779846	0	C	T	consensus_score=85.3	frequency=1	major_base=T	major_cov=16/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/9
RA	1271	.	1	779849	0	A	T	consensus_score=81.7	frequency=1	major_base=T	major_cov=16/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/9
RA	1272	.	1	779852	0	T	C	consensus_score=81.9	frequency=1	major_base=C	major_cov=16/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/9
RA	1273	.	1	779858	0	C	T	consensus_score=80.7	frequency=1	major_base=T	major_cov=16/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/9
RA	1274	.	1	779861	0	T	C	consensus_score=81.8	frequency=1	major_base=C	major_cov=16/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/9
RA	1275	.	1	779864	0	T	C	consensus_score=78.9	frequency=1	major_base=C	major_cov=16/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/9
RA	1276	.	1	779867	0	T	C	consensus_score=82.9	frequency=1	major_base=C	major_cov=16/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/9
RA	1277	.	1	779868	0	T	C	consensus_score=82.4	frequency=1	major_base=C	major_cov=16/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/9
RA	1278	.	1	779873	0	G	A	consensus_score=79.0	frequency=1	major_base=A	major_cov=16/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/9
RA	1279	.	1	779876	0	C	T	consensus_score=80.8	frequency=1	major_base=T	major_cov=16/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/9
RA	1280	.	1	779881	0	A	G	consensus_score=84.5	frequency=1	major_base=G	major_cov=16/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/9
RA	1281	.	1	779882	0	T	C	bias_e_value=2130250	bias_p_value=0.980236	consensus_score=73.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.807887	major_base=C	major_cov=15/9	major_frequency=9.600e-01	minor_base=T	minor_cov=1/0	new_cov=15/9	polymorphism_frequency=9.600e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=1/0	total_cov=16/9
RA	1282	.	1	779888	0	A	T	consensus_score=104.2	frequency=1	major_base=T	major_cov=19/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/12
RA	1283	.	1	779891	0	G	C	consensus_score=103.3	frequency=1	major_base=C	major_cov=19/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/12
RA	1284	.	1	779903	0	C	T	consensus_score=134.0	frequency=1	major_base=T	major_cov=25/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/15
RA	1285	.	1	779912	0	G	A	bias_e_value=2124900	bias_p_value=0.977772	consensus_score=144.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.796703	major_base=A	major_cov=29/15	major_frequency=9.778e-01	minor_base=G	minor_cov=1/0	new_cov=29/15	polymorphism_frequency=9.778e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=1/0	total_cov=30/15
RA	1286	.	1	779930	0	A	G	bias_e_value=2155860	bias_p_value=0.99202	consensus_score=177.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.876353	major_base=G	major_cov=31/23	major_frequency=9.818e-01	minor_base=A	minor_cov=1/0	new_cov=31/23	polymorphism_frequency=9.818e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=1/0	total_cov=32/23
RA	1287	.	1	779942	0	T	C	bias_e_value=2144720	bias_p_value=0.986895	consensus_score=200.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.842537	major_base=C	major_cov=35/26	major_frequency=9.839e-01	minor_base=T	minor_cov=1/0	new_cov=35/26	polymorphism_frequency=9.839e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=1/0	total_cov=36/26
RA	1288	.	1	779954	0	T	C	bias_e_value=2149420	bias_p_value=0.989057	consensus_score=213.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.855757	major_base=C	major_cov=35/29	major_frequency=9.846e-01	minor_base=T	minor_cov=1/0	new_cov=35/29	polymorphism_frequency=9.846e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=1/0	total_cov=36/29
RA	1289	.	1	779987	0	C	T	bias_e_value=2173000	bias_p_value=0.999907	consensus_score=247.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.986395	major_base=T	major_cov=39/33	major_frequency=9.863e-01	minor_base=C	minor_cov=1/0	new_cov=39/33	polymorphism_frequency=9.863e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=1/0	total_cov=40/33
RA	1290	.	1	780003	0	C	A	bias_e_value=2173180	bias_p_value=0.999992	consensus_score=224.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.995938	major_base=A	major_cov=35/31	major_frequency=9.851e-01	minor_base=C	minor_cov=1/0	new_cov=35/31	polymorphism_frequency=9.851e-01	polymorphism_score=-3.3	prediction=consensus	ref_cov=1/0	total_cov=36/31
RA	1291	.	1	780005	0	T	G	bias_e_value=2173180	bias_p_value=0.999992	consensus_score=230.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.995938	major_base=G	major_cov=35/31	major_frequency=9.851e-01	minor_base=T	minor_cov=1/0	new_cov=35/31	polymorphism_frequency=9.851e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=1/0	total_cov=36/31
RA	1292	.	1	780007	0	C	T	bias_e_value=2172640	bias_p_value=0.999743	consensus_score=215.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.977415	major_base=T	major_cov=35/30	major_frequency=9.848e-01	minor_base=C	minor_cov=1/0	new_cov=35/30	polymorphism_frequency=9.848e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=1/0	total_cov=36/31
RA	1293	.	1	780020	0	A	G	bias_e_value=2172310	bias_p_value=0.999589	consensus_score=218.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.971469	major_base=G	major_cov=33/33	major_frequency=9.851e-01	minor_base=A	minor_cov=1/0	new_cov=33/33	polymorphism_frequency=9.851e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=1/0	total_cov=34/33
RA	1294	.	1	780035	0	C	T	consensus_score=212.4	frequency=1	major_base=T	major_cov=31/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/32
RA	1295	.	1	780044	0	T	A	consensus_score=191.4	frequency=1	major_base=A	major_cov=28/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/29
RA	1296	.	1	780047	0	G	T	consensus_score=197.4	frequency=1	major_base=T	major_cov=28/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/29
RA	1297	.	1	780050	0	A	C	consensus_score=186.5	frequency=1	major_base=C	major_cov=28/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/29
RA	1298	.	1	780053	0	T	C	consensus_score=196.5	frequency=1	major_base=C	major_cov=28/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/29
RA	1299	.	1	780104	0	T	C	consensus_score=248.2	frequency=1	major_base=C	major_cov=30/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/41
RA	1300	.	1	780149	0	A	G	consensus_score=212.6	frequency=1	major_base=G	major_cov=26/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/37
RA	1301	.	1	780152	0	T	A	consensus_score=214.5	frequency=1	major_base=A	major_cov=26/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/37
RA	1302	.	1	780197	0	C	G	consensus_score=183.9	frequency=1	major_base=G	major_cov=25/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/31
RA	1303	.	1	780200	0	G	T	consensus_score=189.7	frequency=1	major_base=T	major_cov=25/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/31
RA	1304	.	1	780218	0	G	A	consensus_score=182.5	frequency=1	major_base=A	major_cov=28/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/27
RA	1305	.	1	780224	0	G	A	consensus_score=165.7	frequency=1	major_base=A	major_cov=24/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/26
RA	1306	.	1	780225	0	A	C	consensus_score=166.8	frequency=1	major_base=C	major_cov=24/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/26
RA	1307	.	1	780227	0	G	A	consensus_score=167.3	frequency=1	major_base=A	major_cov=24/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/26
RA	1308	.	1	780230	0	A	C	consensus_score=171.3	frequency=1	major_base=C	major_cov=24/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/26
RA	1309	.	1	780239	0	T	A	consensus_score=175.4	frequency=1	major_base=A	major_cov=26/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/27
RA	1310	.	1	780245	0	A	T	consensus_score=176.2	frequency=1	major_base=T	major_cov=26/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/27
RA	1311	.	1	780252	0	T	G	consensus_score=157.6	frequency=1	major_base=G	major_cov=22/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/23
RA	1312	.	1	780253	0	C	A	consensus_score=143.5	frequency=1	major_base=A	major_cov=22/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/23
RA	1313	.	1	780260	0	C	T	consensus_score=164.9	frequency=1	major_base=T	major_cov=27/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/22
RA	1314	.	1	780263	0	C	A	consensus_score=163.9	frequency=1	major_base=A	major_cov=27/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/22
RA	1315	.	1	780266	0	A	T	consensus_score=163.7	frequency=1	major_base=T	major_cov=27/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/22
RA	1316	.	1	780278	0	A	T	bias_e_value=1801760	bias_p_value=0.829081	consensus_score=176.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.475634	major_base=T	major_cov=30/22	major_frequency=9.811e-01	minor_base=C	minor_cov=1/0	new_cov=30/22	polymorphism_frequency=9.811e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=0/0	total_cov=31/22
RA	1317	.	1	780288	0	A	G	consensus_score=156.3	frequency=1	major_base=G	major_cov=28/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/17
RA	1318	.	1	780290	0	G	A	consensus_score=146.2	frequency=1	major_base=A	major_cov=28/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/17
RA	1319	.	1	780293	0	T	C	consensus_score=155.3	frequency=1	major_base=C	major_cov=28/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/17
RA	1320	.	1	780299	0	G	A	consensus_score=149.3	frequency=1	major_base=A	major_cov=28/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/17
RA	1321	.	1	780300	0	G	A	consensus_score=147.1	frequency=1	major_base=A	major_cov=28/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/17
RA	1322	.	1	780305	0	A	T	consensus_score=188.8	frequency=1	major_base=T	major_cov=33/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/20
RA	1323	.	1	780320	0	A	C	consensus_score=172.5	frequency=1	major_base=C	major_cov=32/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/20
RA	1324	.	1	780326	0	C	A	consensus_score=184.6	frequency=1	major_base=A	major_cov=33/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/22
RA	1325	.	1	780332	0	T	C	consensus_score=200.4	frequency=1	major_base=C	major_cov=35/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/25
RA	1326	.	1	780338	0	T	C	consensus_score=205.5	frequency=1	major_base=C	major_cov=35/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/25
RA	1327	.	1	780412	0	C	T	consensus_score=209.4	frequency=1	major_base=T	major_cov=33/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/29
RA	1328	.	1	780447	0	T	C	bias_e_value=1682160	bias_p_value=0.774046	consensus_score=238.8	fisher_strand_p_value=0.492754	frequency=1	ks_quality_p_value=0.828632	major_base=C	major_cov=33/35	major_frequency=9.855e-01	minor_base=.	minor_cov=1/0	new_cov=33/35	polymorphism_frequency=9.855e-01	polymorphism_score=-2.6	prediction=consensus	ref_cov=0/0	total_cov=34/35
RA	1329	.	1	780492	0	G	A	consensus_score=237.4	frequency=1	major_base=A	major_cov=32/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/38
RA	1330	.	1	784492	1	.	A	consensus_score=282.5	frequency=1	major_base=A	major_cov=42/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/40
RA	1331	.	1	789295	0	G	A	bias_e_value=0.143747	bias_p_value=6.61451e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=43.0	fisher_strand_p_value=3.21803e-09	frequency=4.375e-01	ks_quality_p_value=1	major_base=G	major_cov=5/22	major_frequency=5.625e-01	minor_base=A	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=4.375e-01	polymorphism_score=22.4	prediction=polymorphism	ref_cov=5/22	total_cov=26/22
RA	1332	.	1	794721	0	G	T	bias_e_value=0.184639	bias_p_value=8.49619e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=172.0	fisher_strand_p_value=4.32129e-09	frequency=2.090e-01	ks_quality_p_value=0.968952	major_base=G	major_cov=48/5	major_frequency=7.910e-01	minor_base=T	minor_cov=1/13	new_cov=1/13	polymorphism_frequency=2.090e-01	polymorphism_score=15.1	prediction=polymorphism	ref_cov=48/5	total_cov=49/19
RA	1333	.	1	794825	0	G	A	consensus_score=248.6	frequency=1	major_base=A	major_cov=48/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/24
RA	1334	.	1	795375	0	C	T	bias_e_value=0.00840544	bias_p_value=3.86777e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=111.9	fisher_strand_p_value=1.64384e-10	frequency=3.043e-01	ks_quality_p_value=1	major_base=C	major_cov=10/38	major_frequency=6.957e-01	minor_base=T	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=3.043e-01	polymorphism_score=14.1	prediction=polymorphism	ref_cov=10/38	total_cov=31/38
RA	1335	.	1	798656	0	T	C	consensus_score=300.1	frequency=1	major_base=C	major_cov=28/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/58
RA	1336	.	1	805432	0	T	C	consensus_score=212.2	frequency=1	major_base=C	major_cov=27/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/34
RA	1337	.	1	815191	0	T	C	consensus_score=273.3	frequency=1	major_base=C	major_cov=40/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/41
RA	1338	.	1	821934	0	A	C	bias_e_value=0.00142731	bias_p_value=6.56779e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=152.1	fisher_strand_p_value=2.58803e-11	frequency=3.425e-01	ks_quality_p_value=1	major_base=A	major_cov=37/11	major_frequency=6.575e-01	minor_base=C	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=3.425e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=37/11	total_cov=37/36
RA	1339	.	1	827757	0	T	G	consensus_score=362.2	frequency=1	major_base=G	major_cov=41/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/63
RA	1340	.	1	831599	0	A	G	consensus_score=301.0	frequency=1	major_base=G	major_cov=45/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/43
RA	1341	.	1	833508	0	A	.	consensus_score=502.5	frequency=1	major_base=.	major_cov=61/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/52
RA	1342	.	1	840690	0	A	G	consensus_score=345.4	frequency=1	major_base=G	major_cov=44/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/58
RA	1343	.	1	843106	0	T	C	consensus_score=258.4	frequency=1	major_base=C	major_cov=43/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/32
RA	1344	.	1	846201	0	T	C	consensus_score=301.4	frequency=1	major_base=C	major_cov=34/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/51
RA	1345	.	1	850566	0	T	G	bias_e_value=0.00533094	bias_p_value=2.45303e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=143.4	fisher_strand_p_value=1.02192e-10	frequency=3.452e-01	ks_quality_p_value=1	major_base=T	major_cov=17/38	major_frequency=6.548e-01	minor_base=G	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=3.452e-01	polymorphism_score=21.2	prediction=polymorphism	ref_cov=17/38	total_cov=51/38
RA	1346	.	1	863092	0	G	.	consensus_score=65.6	frequency=1	major_base=.	major_cov=8/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/8
RA	1347	.	1	863093	0	T	A	consensus_score=52.0	frequency=1	major_base=A	major_cov=8/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/8
RA	1348	.	1	866340	0	C	T	bias_e_value=1801490	bias_p_value=0.828956	consensus_score=286.0	fisher_strand_p_value=0.47561	frequency=1	ks_quality_p_value=0.999699	major_base=T	major_cov=38/43	major_frequency=9.878e-01	minor_base=C	minor_cov=1/0	new_cov=38/43	polymorphism_frequency=9.878e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=1/0	total_cov=39/43
RA	1349	.	1	867145	0	C	T	consensus_score=253.0	frequency=1	major_base=T	major_cov=27/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/45
RA	1350	.	1	870317	0	C	T	consensus_score=251.3	frequency=1	major_base=T	major_cov=28/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/46
RA	1351	.	1	873069	0	T	C	consensus_score=294.4	frequency=1	major_base=C	major_cov=45/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/42
RA	1352	.	1	885664	0	G	A	consensus_score=339.9	frequency=1	major_base=A	major_cov=47/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/52
RA	1353	.	1	886379	0	C	T	consensus_score=361.3	frequency=1	major_base=T	major_cov=60/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/45
RA	1354	.	1	886858	0	A	C	consensus_score=324.6	frequency=1	major_base=C	major_cov=50/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/45
RA	1355	.	1	892558	0	G	A	bias_e_value=0.000284514	bias_p_value=1.30919e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=168.3	fisher_strand_p_value=4.83912e-12	frequency=2.439e-01	ks_quality_p_value=1	major_base=G	major_cov=10/52	major_frequency=7.561e-01	minor_base=A	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.439e-01	polymorphism_score=14.1	prediction=polymorphism	ref_cov=10/52	total_cov=30/52
RA	1356	.	1	892572	0	A	T	bias_e_value=0.0241594	bias_p_value=1.11169e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=213.5	fisher_strand_p_value=4.9574e-10	frequency=2.143e-01	ks_quality_p_value=1	major_base=A	major_cov=14/52	major_frequency=7.857e-01	minor_base=T	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.143e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=14/52	total_cov=32/52
RA	1357	.	1	896119	0	A	G	consensus_score=308.5	frequency=1	major_base=G	major_cov=49/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/43
RA	1358	.	1	896202	0	A	G	consensus_score=285.8	frequency=1	major_base=G	major_cov=41/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/43
RA	1359	.	1	904840	0	T	C	consensus_score=361.4	frequency=1	major_base=C	major_cov=47/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/59
RA	1360	.	1	906191	0	A	G	consensus_score=265.0	frequency=1	major_base=G	major_cov=44/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/35
RA	1361	.	1	911411	0	A	G	bias_e_value=0.0142789	bias_p_value=6.57045e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=114.9	fisher_strand_p_value=2.85981e-10	frequency=2.836e-01	ks_quality_p_value=1	major_base=A	major_cov=9/39	major_frequency=7.164e-01	minor_base=G	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.836e-01	polymorphism_score=15.2	prediction=polymorphism	ref_cov=9/39	total_cov=28/39
RA	1362	.	1	911440	0	T	G	bias_e_value=0.00281365	bias_p_value=1.2947e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=143.5	fisher_strand_p_value=5.24795e-11	frequency=3.333e-01	ks_quality_p_value=1	major_base=T	major_cov=11/37	major_frequency=6.667e-01	minor_base=G	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=3.333e-01	polymorphism_score=14.8	prediction=polymorphism	ref_cov=11/37	total_cov=35/37
RA	1363	.	1	911825	0	A	G	consensus_score=374.6	frequency=1	major_base=G	major_cov=49/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/60
RA	1364	.	1	915845	0	T	C	consensus_score=305.1	frequency=1	major_base=C	major_cov=43/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/48
RA	1365	.	1	920875	0	A	G	consensus_score=284.8	frequency=1	major_base=G	major_cov=47/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/36
RA	1366	.	1	933211	0	C	T	consensus_score=299.6	frequency=1	major_base=T	major_cov=43/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/42
RA	1367	.	1	936810	0	G	A	consensus_score=257.2	frequency=1	major_base=A	major_cov=32/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/44
RA	1368	.	1	937623	0	G	A	consensus_score=292.8	frequency=1	major_base=A	major_cov=45/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/38
RA	1369	.	1	944444	0	G	A	consensus_score=397.5	frequency=1	major_base=A	major_cov=63/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/54
RA	1370	.	1	944580	0	C	T	consensus_score=393.2	frequency=1	major_base=T	major_cov=42/73	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/73	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/73
RA	1371	.	1	947202	0	T	C	consensus_score=317.9	frequency=1	major_base=C	major_cov=47/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/47
RA	1372	.	1	959254	0	T	C	consensus_score=267.5	frequency=1	major_base=C	major_cov=42/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/37
RA	1373	.	1	959680	0	C	T	bias_e_value=4.12689e-08	bias_p_value=1.89899e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=84.9	fisher_strand_p_value=5.44443e-16	frequency=3.827e-01	ks_quality_p_value=0.963963	major_base=C	major_cov=43/7	major_frequency=6.173e-01	minor_base=T	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=3.827e-01	polymorphism_score=31.8	prediction=polymorphism	ref_cov=43/7	total_cov=43/38
RA	1374	.	1	968385	0	C	T	bias_e_value=1791580	bias_p_value=0.824398	consensus_score=345.2	fisher_strand_p_value=0.469388	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=52/45	major_frequency=9.898e-01	minor_base=G	minor_cov=0/1	new_cov=52/45	polymorphism_frequency=9.898e-01	polymorphism_score=-5.4	prediction=consensus	ref_cov=0/0	total_cov=52/46
RA	1375	.	1	975299	0	C	T	consensus_score=171.2	frequency=1	major_base=T	major_cov=18/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/33
RA	1376	.	1	983524	0	A	G	bias_e_value=1815820	bias_p_value=0.83555	consensus_score=332.5	fisher_strand_p_value=0.484848	frequency=1	ks_quality_p_value=0.999176	major_base=G	major_cov=47/51	major_frequency=9.899e-01	minor_base=A	minor_cov=1/0	new_cov=47/51	polymorphism_frequency=9.899e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=48/51
RA	1377	.	1	997376	0	G	A	consensus_score=231.1	frequency=1	major_base=A	major_cov=46/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/25
RA	1378	.	1	1000237	0	G	A	consensus_score=213.5	frequency=1	major_base=A	major_cov=37/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/26
RA	1379	.	1	1000300	0	C	T	consensus_score=202.2	frequency=1	major_base=T	major_cov=32/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/28
RA	1380	.	1	1012170	0	T	C	consensus_score=156.5	frequency=1	major_base=C	major_cov=23/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/24
RA	1381	.	1	1016450	0	A	C	consensus_score=185.4	frequency=1	major_base=C	major_cov=26/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/28
RA	1382	.	1	1016660	0	C	G	bias_e_value=391.18	bias_p_value=0.000180002	consensus_reject=FREQUENCY_CUTOFF	consensus_score=49.1	fisher_strand_p_value=1.6121e-05	frequency=3.871e-01	ks_quality_p_value=0.921477	major_base=C	major_cov=15/4	major_frequency=6.129e-01	minor_base=G	minor_cov=0/12	new_cov=0/12	polymorphism_frequency=3.871e-01	polymorphism_score=11.9	prediction=polymorphism	ref_cov=15/4	total_cov=15/17
RA	1383	.	1	1017941	0	A	C	consensus_score=245.4	frequency=1	major_base=C	major_cov=34/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/37
RA	1384	.	1	1024683	0	C	T	consensus_score=153.8	frequency=1	major_base=T	major_cov=30/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/17
RA	1385	.	1	1026971	0	A	C	consensus_score=236.5	frequency=1	major_base=C	major_cov=36/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/34
RA	1386	.	1	1030583	0	C	A	consensus_score=159.3	frequency=1	major_base=A	major_cov=23/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/25
RA	1387	.	1	1031104	0	G	A	consensus_score=163.2	frequency=1	major_base=A	major_cov=25/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/24
RA	1388	.	1	1038335	0	C	A	consensus_score=172.2	frequency=1	major_base=A	major_cov=24/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/27
RA	1389	.	1	1038504	0	C	T	consensus_score=135.9	frequency=1	major_base=T	major_cov=21/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/20
RA	1390	.	1	1039204	0	T	C	consensus_score=147.8	frequency=1	major_base=C	major_cov=22/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/23
RA	1391	.	1	1040377	0	T	C	consensus_score=200.3	frequency=1	major_base=C	major_cov=28/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/29
RA	1392	.	1	1051708	0	A	.	consensus_score=274.7	frequency=1	major_base=.	major_cov=31/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/32
RA	1393	.	1	1056036	0	G	A	consensus_score=338.6	frequency=1	major_base=A	major_cov=44/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/55
RA	1394	.	1	1061570	0	G	A	consensus_score=336.6	frequency=1	major_base=A	major_cov=50/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/46
RA	1395	.	1	1061948	0	A	G	consensus_score=148.0	frequency=1	major_base=G	major_cov=24/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/19
RA	1396	.	1	1069137	0	T	C	consensus_score=200.9	frequency=1	major_base=C	major_cov=37/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/23
RA	1397	.	1	1071434	0	T	C	consensus_score=58.5	frequency=1	major_base=C	major_cov=12/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/6
RA	1398	.	1	1072154	0	A	C	bias_e_value=2.23463e-08	bias_p_value=1.02827e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=121.4	fisher_strand_p_value=2.79313e-16	frequency=4.267e-01	ks_quality_p_value=1	major_base=A	major_cov=38/5	major_frequency=5.733e-01	minor_base=C	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=4.267e-01	polymorphism_score=11.9	prediction=polymorphism	ref_cov=38/5	total_cov=38/37
RA	1399	.	1	1080778	0	T	C	consensus_score=343.0	frequency=1	major_base=C	major_cov=44/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/53
RA	1400	.	1	1098586	0	T	G	consensus_score=238.6	frequency=1	major_base=G	major_cov=34/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/35
RA	1401	.	1	1099684	0	G	A	consensus_score=239.8	frequency=1	major_base=A	major_cov=34/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/37
RA	1402	.	1	1099980	0	C	T	consensus_score=251.6	frequency=1	major_base=T	major_cov=34/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/40
RA	1403	.	1	1114803	0	T	C	consensus_score=197.6	frequency=1	major_base=C	major_cov=26/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/33
RA	1404	.	1	1115259	0	G	A	bias_e_value=971.92	bias_p_value=0.00044723	consensus_reject=FREQUENCY_CUTOFF	consensus_score=124.6	fisher_strand_p_value=4.02138e-05	frequency=2.836e-01	ks_quality_p_value=1	major_base=G	major_cov=24/24	major_frequency=7.164e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.836e-01	polymorphism_score=14.2	prediction=polymorphism	ref_cov=24/24	total_cov=24/44
RA	1405	.	1	1115682	0	T	C	consensus_score=233.3	frequency=1	major_base=C	major_cov=30/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/41
RA	1406	.	1	1119322	0	A	G	consensus_score=135.5	frequency=1	major_base=G	major_cov=16/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/25
RA	1407	.	1	1123184	0	A	G	bias_e_value=2173200	bias_p_value=1	consensus_score=261.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999649	major_base=G	major_cov=40/35	major_frequency=9.868e-01	minor_base=A	minor_cov=1/0	new_cov=40/35	polymorphism_frequency=9.868e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=41/35
RA	1408	.	1	1132698	0	C	T	bias_e_value=2170570	bias_p_value=0.998788	consensus_score=305.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.951181	major_base=T	major_cov=36/52	major_frequency=9.888e-01	minor_base=C	minor_cov=0/1	new_cov=36/52	polymorphism_frequency=9.888e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/1	total_cov=36/53
RA	1409	.	1	1133930	0	T	C	consensus_score=260.6	frequency=1	major_base=C	major_cov=32/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/43
RA	1410	.	1	1134432	0	C	T	bias_e_value=866623	bias_p_value=0.398777	consensus_score=205.6	fisher_strand_p_value=0.131745	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=38/31	major_frequency=9.452e-01	minor_base=G	minor_cov=4/0	new_cov=38/31	polymorphism_frequency=9.452e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/31
RA	1411	.	1	1141129	0	T	C	consensus_score=165.9	frequency=1	major_base=C	major_cov=19/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/29
RA	1412	.	1	1147721	0	T	C	consensus_score=256.1	frequency=1	major_base=C	major_cov=35/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/40
RA	1413	.	1	1152112	0	G	A	consensus_score=289.3	frequency=1	major_base=A	major_cov=50/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/35
RA	1414	.	1	1152479	0	C	T	consensus_score=307.4	frequency=1	major_base=T	major_cov=43/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/44
RA	1415	.	1	1154838	0	T	C	consensus_score=271.5	frequency=1	major_base=C	major_cov=41/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/39
RA	1416	.	1	1155844	0	A	T	consensus_score=373.2	frequency=1	major_base=T	major_cov=56/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/51
RA	1417	.	1	1159318	0	A	C	bias_e_value=0.0317031	bias_p_value=1.45882e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=173.9	fisher_strand_p_value=6.58893e-10	frequency=2.568e-01	ks_quality_p_value=1	major_base=A	major_cov=43/12	major_frequency=7.432e-01	minor_base=C	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.568e-01	polymorphism_score=10.8	prediction=polymorphism	ref_cov=43/12	total_cov=43/32
RA	1418	.	1	1160217	0	G	A	bias_e_value=0.0022388	bias_p_value=1.03019e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=110.0	fisher_strand_p_value=4.13584e-11	frequency=3.065e-01	ks_quality_p_value=1	major_base=G	major_cov=6/37	major_frequency=6.935e-01	minor_base=A	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=3.065e-01	polymorphism_score=13.6	prediction=polymorphism	ref_cov=6/37	total_cov=26/37
RA	1419	.	1	1171632	0	T	C	consensus_score=200.1	frequency=1	major_base=C	major_cov=50/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/12
RA	1420	.	1	1176334	0	G	A	consensus_score=363.1	frequency=1	major_base=A	major_cov=58/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/49
RA	1421	.	1	1190766	0	C	T	consensus_score=345.6	frequency=1	major_base=T	major_cov=47/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/51
RA	1422	.	1	1197176	0	A	G	consensus_score=313.9	frequency=1	major_base=G	major_cov=48/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/45
RA	1423	.	1	1197718	0	A	G	consensus_score=303.5	frequency=1	major_base=G	major_cov=45/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/45
RA	1424	.	1	1200012	0	T	C	consensus_score=458.3	frequency=1	major_base=C	major_cov=71/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=71/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=71/57
RA	1425	.	1	1200593	0	T	C	consensus_score=253.0	frequency=1	major_base=C	major_cov=37/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/36
RA	1426	.	1	1203405	0	T	C	consensus_score=303.3	frequency=1	major_base=C	major_cov=46/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/44
RA	1427	.	1	1209156	0	G	A	consensus_score=307.5	frequency=1	major_base=A	major_cov=43/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/47
RA	1428	.	1	1215820	0	G	A	consensus_score=287.0	frequency=1	major_base=A	major_cov=35/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/47
RA	1429	.	1	1216282	0	C	T	consensus_score=285.8	frequency=1	major_base=T	major_cov=31/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/49
RA	1430	.	1	1218077	0	C	T	consensus_score=279.8	frequency=1	major_base=T	major_cov=51/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/30
RA	1431	.	1	1240323	0	C	T	bias_e_value=0.0017169	bias_p_value=7.90033e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=115.7	fisher_strand_p_value=3.13689e-11	frequency=3.038e-01	ks_quality_p_value=1	major_base=C	major_cov=13/42	major_frequency=6.962e-01	minor_base=T	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=3.038e-01	polymorphism_score=19.5	prediction=polymorphism	ref_cov=13/42	total_cov=37/42
RA	1432	.	1	1240348	0	C	T	bias_e_value=6.83599e-08	bias_p_value=3.14558e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=100.2	fisher_strand_p_value=8.81997e-16	frequency=3.875e-01	ks_quality_p_value=1	major_base=C	major_cov=7/42	major_frequency=6.125e-01	minor_base=T	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=3.875e-01	polymorphism_score=27.2	prediction=polymorphism	ref_cov=7/42	total_cov=39/42
RA	1433	.	1	1240380	0	G	T	bias_e_value=1.20692	bias_p_value=5.55365e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=188.3	fisher_strand_p_value=3.03294e-08	frequency=2.432e-01	ks_quality_p_value=1	major_base=G	major_cov=16/40	major_frequency=7.568e-01	minor_base=T	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.432e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=16/40	total_cov=34/40
RA	1434	.	1	1243812	0	T	C	consensus_score=126.1	frequency=1	major_base=C	major_cov=16/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/21
RA	1435	.	1	1243994	0	A	G	consensus_score=154.6	frequency=1	major_base=G	major_cov=21/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/25
RA	1436	.	1	1253880	0	C	A	consensus_score=316.5	frequency=1	major_base=A	major_cov=40/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/53
RA	1437	.	1	1273690	0	C	T	consensus_score=339.2	frequency=1	major_base=T	major_cov=53/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/46
RA	1438	.	1	1278262	0	A	G	consensus_score=293.7	frequency=1	major_base=G	major_cov=48/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/36
RA	1439	.	1	1280799	0	A	G	consensus_score=278.3	frequency=1	major_base=G	major_cov=39/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/41
RA	1440	.	1	1282973	0	A	G	consensus_score=287.2	frequency=1	major_base=G	major_cov=49/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/38
RA	1441	.	1	1288009	0	T	G	bias_e_value=4.95053e-07	bias_p_value=2.27799e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=160.1	fisher_strand_p_value=6.77457e-15	frequency=3.243e-01	ks_quality_p_value=1	major_base=T	major_cov=5/45	major_frequency=6.757e-01	minor_base=G	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=3.243e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=5/45	total_cov=29/45
RA	1442	.	1	1291150	0	G	A	bias_e_value=1808610	bias_p_value=0.832234	consensus_score=333.5	fisher_strand_p_value=0.48	frequency=1	ks_quality_p_value=0.999798	major_base=A	major_cov=52/47	major_frequency=9.900e-01	minor_base=C	minor_cov=0/1	new_cov=52/47	polymorphism_frequency=9.900e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/48
RA	1443	.	1	1292036	0	T	C	consensus_score=343.6	frequency=1	major_base=C	major_cov=42/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/59
RA	1444	.	1	1302158	0	G	T	consensus_score=298.3	frequency=1	major_base=T	major_cov=48/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/38
RA	1445	.	1	1303227	0	T	C	consensus_score=274.2	frequency=1	major_base=C	major_cov=46/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/36
RA	1446	.	1	1317340	0	T	C	consensus_score=188.0	frequency=1	major_base=C	major_cov=25/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/28
RA	1447	.	1	1326118	0	A	C	consensus_score=161.3	frequency=1	major_base=C	major_cov=16/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/30
RA	1448	.	1	1326440	0	T	C	consensus_score=249.1	frequency=1	major_base=C	major_cov=32/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/38
RA	1449	.	1	1326734	0	T	C	consensus_score=255.6	frequency=1	major_base=C	major_cov=45/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/30
RA	1450	.	1	1329525	0	G	T	consensus_score=216.9	frequency=1	major_base=T	major_cov=36/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/28
RA	1451	.	1	1340408	0	T	C	consensus_score=282.8	frequency=1	major_base=C	major_cov=37/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/43
RA	1452	.	1	1342768	0	G	A	consensus_score=159.6	frequency=1	major_base=A	major_cov=27/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/21
RA	1453	.	1	1344407	0	T	G	bias_e_value=5.64367e-05	bias_p_value=2.59694e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=105.2	fisher_strand_p_value=9.03845e-13	frequency=4.154e-01	ks_quality_p_value=1	major_base=T	major_cov=6/32	major_frequency=5.846e-01	minor_base=G	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=4.154e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=6/32	total_cov=33/32
RA	1454	.	1	1345815	0	G	T	consensus_score=118.3	frequency=1	major_base=T	major_cov=21/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/15
RA	1455	.	1	1355065	0	C	T	bias_e_value=0.00151638	bias_p_value=6.97762e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=98.0	fisher_strand_p_value=2.75637e-11	frequency=2.545e-01	ks_quality_p_value=1	major_base=C	major_cov=2/39	major_frequency=7.455e-01	minor_base=T	minor_cov=14/0	new_cov=14/0	polymorphism_frequency=2.545e-01	polymorphism_score=15.5	prediction=polymorphism	ref_cov=2/39	total_cov=17/39
RA	1456	.	1	1356174	0	T	C	consensus_score=299.6	frequency=1	major_base=C	major_cov=47/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/40
RA	1457	.	1	1357196	0	C	T	bias_e_value=2173200	bias_p_value=1	consensus_score=262.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999675	major_base=T	major_cov=30/48	major_frequency=9.873e-01	minor_base=C	minor_cov=0/1	new_cov=30/48	polymorphism_frequency=9.873e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/1	total_cov=30/49
RA	1458	.	1	1365243	0	G	A	bias_e_value=2173200	bias_p_value=1	consensus_score=180.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=27/26	major_frequency=9.815e-01	minor_base=G	minor_cov=0/1	new_cov=27/26	polymorphism_frequency=9.815e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=27/27
RA	1459	.	1	1367647	0	T	G	consensus_score=291.9	frequency=1	major_base=G	major_cov=37/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/48
RA	1460	.	1	1367650	0	G	A	consensus_score=299.1	frequency=1	major_base=A	major_cov=37/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/48
RA	1461	.	1	1376298	0	C	T	bias_e_value=1.05249e-05	bias_p_value=4.84306e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=154.1	fisher_strand_p_value=1.58944e-13	frequency=2.658e-01	ks_quality_p_value=1	major_base=C	major_cov=51/7	major_frequency=7.342e-01	minor_base=T	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.658e-01	polymorphism_score=13.8	prediction=polymorphism	ref_cov=51/7	total_cov=51/28
RA	1462	.	1	1380617	0	T	C	consensus_score=278.9	frequency=1	major_base=C	major_cov=32/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/48
RA	1463	.	1	1387623	0	A	C	consensus_score=396.6	frequency=1	major_base=C	major_cov=64/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/49
RA	1464	.	1	1391706	0	C	A	consensus_score=263.0	frequency=1	major_base=A	major_cov=41/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/36
RA	1465	.	1	1395301	1	.	C	bias_e_value=581250	bias_p_value=0.267463	consensus_score=115.8	fisher_strand_p_value=0.106029	frequency=1	ks_quality_p_value=0.700784	major_base=C	major_cov=16/20	major_frequency=9.000e-01	minor_base=.	minor_cov=4/0	new_cov=16/20	polymorphism_frequency=9.000e-01	polymorphism_score=7.7	prediction=consensus	ref_cov=4/0	total_cov=20/20
RA	1466	.	1	1395301	2	.	C	bias_e_value=1488750	bias_p_value=0.685049	consensus_score=111.0	fisher_strand_p_value=0.341649	frequency=1	ks_quality_p_value=0.937737	major_base=C	major_cov=16/19	major_frequency=8.750e-01	minor_base=.	minor_cov=4/1	new_cov=16/19	polymorphism_frequency=8.750e-01	polymorphism_score=11.9	prediction=consensus	ref_cov=4/1	total_cov=20/20
RA	1467	.	1	1399167	0	T	C	consensus_score=201.1	frequency=1	major_base=C	major_cov=27/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/33
RA	1468	.	1	1402469	0	A	C	consensus_score=76.5	frequency=1	major_base=C	major_cov=14/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/9
RA	1469	.	1	1404438	0	T	C	consensus_score=218.3	frequency=1	major_base=C	major_cov=33/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/29
RA	1470	.	1	1418722	0	T	C	consensus_score=271.2	frequency=1	major_base=C	major_cov=34/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/46
RA	1471	.	1	1422086	0	A	G	consensus_score=147.8	frequency=1	major_base=G	major_cov=19/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/26
RA	1472	.	1	1451056	0	G	T	bias_e_value=4134.71	bias_p_value=0.00190259	consensus_reject=FREQUENCY_CUTOFF	consensus_score=52.7	fisher_strand_p_value=0.0001999	frequency=3.333e-01	ks_quality_p_value=1	major_base=G	major_cov=15/5	major_frequency=6.667e-01	minor_base=T	minor_cov=0/10	new_cov=0/10	polymorphism_frequency=3.333e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=15/5	total_cov=15/15
RA	1473	.	1	1451124	0	C	A	bias_e_value=0.174735	bias_p_value=8.04043e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=44.6	fisher_strand_p_value=3.95122e-09	frequency=3.889e-01	ks_quality_p_value=1	major_base=C	major_cov=21/1	major_frequency=6.111e-01	minor_base=A	minor_cov=0/14	new_cov=0/14	polymorphism_frequency=3.889e-01	polymorphism_score=25.6	prediction=polymorphism	ref_cov=21/1	total_cov=21/15
RA	1474	.	1	1456521	0	G	T	consensus_score=246.7	frequency=1	major_base=T	major_cov=40/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/31
RA	1475	.	1	1457147	0	G	A	consensus_score=244.6	frequency=1	major_base=A	major_cov=38/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/34
RA	1476	.	1	1462127	0	T	C	consensus_score=223.9	frequency=1	major_base=C	major_cov=41/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/23
RA	1477	.	1	1467185	0	T	C	consensus_score=179.2	frequency=1	major_base=C	major_cov=37/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/15
RA	1478	.	1	1476241	0	A	C	bias_e_value=1.94806e-07	bias_p_value=8.96401e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=28.4	fisher_strand_p_value=1.16216e-08	frequency=5.741e-01	ks_quality_p_value=2.23013e-07	major_base=C	major_cov=0/31	major_frequency=5.741e-01	minor_base=A	minor_cov=16/7	new_cov=0/31	polymorphism_frequency=5.741e-01	polymorphism_score=66.9	prediction=polymorphism	ref_cov=16/7	total_cov=16/38
RA	1479	.	1	1476262	0	G	A	bias_e_value=2771.96	bias_p_value=0.00127552	consensus_reject=FREQUENCY_CUTOFF	consensus_score=58.6	fisher_strand_p_value=0.000128022	frequency=3.148e-01	ks_quality_p_value=1	major_base=G	major_cov=19/18	major_frequency=6.852e-01	minor_base=A	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=3.148e-01	polymorphism_score=14.1	prediction=polymorphism	ref_cov=19/18	total_cov=19/35
RA	1480	.	1	1478211	0	C	T	bias_e_value=1813150	bias_p_value=0.834322	consensus_score=90.5	fisher_strand_p_value=0.482759	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=15/13	major_frequency=9.655e-01	minor_base=G	minor_cov=0/1	new_cov=15/13	polymorphism_frequency=9.655e-01	polymorphism_score=-5.9	prediction=consensus	ref_cov=0/0	total_cov=15/14
RA	1481	.	1	1480272	0	T	C	bias_e_value=374056	bias_p_value=0.172122	consensus_reject=FREQUENCY_CUTOFF	consensus_score=70.5	fisher_strand_p_value=0.0410503	frequency=7.255e-01	ks_quality_p_value=1	major_base=C	major_cov=14/23	major_frequency=7.255e-01	minor_base=T	minor_cov=1/13	new_cov=14/23	polymorphism_frequency=7.255e-01	polymorphism_score=33.4	prediction=polymorphism	ref_cov=1/13	total_cov=15/36
RA	1482	.	1	1480969	0	G	A	consensus_score=194.1	frequency=1	major_base=A	major_cov=30/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/30
RA	1483	.	1	1496593	0	G	T	consensus_score=35.7	deleted=1	frequency=1	major_base=T	major_cov=5/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/8
RA	1484	.	1	1496652	0	G	A	consensus_score=58.9	deleted=1	frequency=1	major_base=A	major_cov=9/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/11
RA	1485	.	1	1496682	0	T	C	consensus_score=63.9	deleted=1	frequency=1	major_base=C	major_cov=9/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/13
RA	1486	.	1	1496693	0	G	A	consensus_score=71.7	frequency=1	major_base=A	major_cov=10/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/14
RA	1487	.	1	1501068	0	A	G	consensus_score=183.9	frequency=1	major_base=G	major_cov=30/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/23
RA	1488	.	1	1502076	0	C	T	consensus_score=243.4	frequency=1	major_base=T	major_cov=36/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/36
RA	1489	.	1	1502195	0	T	A	bias_e_value=0.0441194	bias_p_value=2.03016e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=135.8	fisher_strand_p_value=9.31511e-10	frequency=3.333e-01	ks_quality_p_value=1	major_base=T	major_cov=12/34	major_frequency=6.667e-01	minor_base=A	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=3.333e-01	polymorphism_score=16.7	prediction=polymorphism	ref_cov=12/34	total_cov=35/34
RA	1490	.	1	1504443	0	C	A	bias_e_value=1236890	bias_p_value=0.569155	consensus_score=133.5	fisher_strand_p_value=0.230769	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=30/8	major_frequency=9.744e-01	minor_base=C	minor_cov=0/1	new_cov=30/8	polymorphism_frequency=9.744e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=30/9
RA	1491	.	1	1506303	0	T	C	consensus_score=213.4	frequency=1	major_base=C	major_cov=28/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/36
RA	1492	.	1	1515264	0	C	G	consensus_score=287.8	frequency=1	major_base=G	major_cov=38/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/47
RA	1493	.	1	1515702	0	T	C	consensus_score=273.0	frequency=1	major_base=C	major_cov=31/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/47
RA	1494	.	1	1519868	0	A	G	consensus_score=343.5	frequency=1	major_base=G	major_cov=49/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/54
RA	1495	.	1	1528021	0	G	T	bias_e_value=1191120	bias_p_value=0.548095	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-3.6	fisher_strand_p_value=0.61927	frequency=5.333e-01	ks_quality_p_value=0.349938	major_base=T	major_cov=3/5	major_frequency=5.333e-01	minor_base=G	minor_cov=4/3	new_cov=3/5	polymorphism_frequency=5.333e-01	polymorphism_score=21.3	prediction=polymorphism	ref_cov=4/3	total_cov=7/8
RA	1496	.	1	1532950	0	A	C	consensus_score=305.9	frequency=1	major_base=C	major_cov=47/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/41
RA	1497	.	1	1535012	0	G	A	bias_e_value=1.30879	bias_p_value=6.02241e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=110.6	fisher_strand_p_value=3.39029e-08	frequency=2.836e-01	ks_quality_p_value=0.974665	major_base=G	major_cov=14/34	major_frequency=7.164e-01	minor_base=A	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.836e-01	polymorphism_score=13.9	prediction=polymorphism	ref_cov=14/34	total_cov=33/34
RA	1498	.	1	1535055	0	T	A	bias_e_value=99.2339	bias_p_value=4.56625e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=184.2	fisher_strand_p_value=3.35639e-06	frequency=2.338e-01	ks_quality_p_value=1	major_base=T	major_cov=24/35	major_frequency=7.662e-01	minor_base=A	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.338e-01	polymorphism_score=10.1	prediction=polymorphism	ref_cov=24/35	total_cov=42/35
RA	1499	.	1	1536242	0	G	T	bias_e_value=0.000305795	bias_p_value=1.40712e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=195.2	fisher_strand_p_value=5.64324e-12	frequency=2.759e-01	ks_quality_p_value=0.924208	major_base=G	major_cov=14/49	major_frequency=7.241e-01	minor_base=T	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.759e-01	polymorphism_score=16.7	prediction=polymorphism	ref_cov=14/49	total_cov=40/49
RA	1500	.	1	1536262	0	G	C	bias_e_value=2.52761e-05	bias_p_value=1.16308e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=189.4	fisher_strand_p_value=3.93413e-13	frequency=2.921e-01	ks_quality_p_value=1	major_base=G	major_cov=13/50	major_frequency=7.079e-01	minor_base=C	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.921e-01	polymorphism_score=25.6	prediction=polymorphism	ref_cov=13/50	total_cov=39/50
RA	1501	.	1	1536308	0	G	C	bias_e_value=0.609418	bias_p_value=2.80424e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=222.5	fisher_strand_p_value=1.47335e-08	frequency=2.159e-01	ks_quality_p_value=1	major_base=G	major_cov=21/48	major_frequency=7.841e-01	minor_base=C	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.159e-01	polymorphism_score=11.9	prediction=polymorphism	ref_cov=21/48	total_cov=40/48
RA	1502	.	1	1536383	0	A	G	bias_e_value=1268260	bias_p_value=0.58359	consensus_score=249.3	fisher_strand_p_value=0.240759	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=37/38	major_frequency=9.615e-01	minor_base=.	minor_cov=3/0	new_cov=37/38	polymorphism_frequency=9.615e-01	polymorphism_score=0.1	prediction=consensus	ref_cov=0/0	total_cov=40/38
RA	1503	.	1	1538359	0	G	T	consensus_score=363.3	frequency=1	major_base=T	major_cov=49/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/56
RA	1504	.	1	1540261	0	C	A	consensus_score=302.1	frequency=1	major_base=A	major_cov=39/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/48
RA	1505	.	1	1541312	0	G	A	consensus_score=211.4	frequency=1	major_base=A	major_cov=23/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/38
RA	1506	.	1	1544163	1	.	C	bias_e_value=2173200	bias_p_value=1	consensus_score=250.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=50/24	major_frequency=9.867e-01	minor_base=T	minor_cov=1/0	new_cov=50/24	polymorphism_frequency=9.867e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=52/24
RA	1507	.	1	1545859	0	C	T	consensus_score=277.8	frequency=1	major_base=T	major_cov=35/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/46
RA	1508	.	1	1546498	0	A	C	consensus_score=500.4	frequency=1	major_base=C	major_cov=60/88	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/88	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/88
RA	1509	.	1	1547502	0	C	A	consensus_score=409.4	frequency=1	major_base=A	major_cov=47/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/69
RA	1510	.	1	1557209	0	A	C	bias_e_value=6.37013e-05	bias_p_value=2.93122e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=167.3	fisher_strand_p_value=1.02466e-12	frequency=3.333e-01	ks_quality_p_value=1	major_base=A	major_cov=45/15	major_frequency=6.667e-01	minor_base=C	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=3.333e-01	polymorphism_score=15.1	prediction=polymorphism	ref_cov=45/15	total_cov=45/46
RA	1511	.	1	1558877	0	C	T	consensus_score=250.2	frequency=1	major_base=T	major_cov=38/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/36
RA	1512	.	1	1566749	0	A	G	bias_e_value=797617	bias_p_value=0.367024	consensus_score=293.4	fisher_strand_p_value=0.116621	frequency=1	ks_quality_p_value=0.999216	major_base=G	major_cov=45/41	major_frequency=9.663e-01	minor_base=A	minor_cov=0/3	new_cov=45/41	polymorphism_frequency=9.663e-01	polymorphism_score=-6.0	prediction=consensus	ref_cov=0/3	total_cov=45/44
RA	1513	.	1	1570933	0	A	C	consensus_score=169.2	frequency=1	major_base=C	major_cov=25/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/24
RA	1514	.	1	1575194	0	C	T	consensus_score=207.9	frequency=1	major_base=T	major_cov=28/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/33
RA	1515	.	1	1577630	0	T	C	consensus_score=181.5	frequency=1	major_base=C	major_cov=27/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/25
RA	1516	.	1	1579838	0	G	T	bias_e_value=0.0920471	bias_p_value=4.23555e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=145.7	fisher_strand_p_value=2.01474e-09	frequency=2.787e-01	ks_quality_p_value=1	major_base=G	major_cov=36/8	major_frequency=7.213e-01	minor_base=T	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=2.787e-01	polymorphism_score=12.1	prediction=polymorphism	ref_cov=36/8	total_cov=36/27
RA	1517	.	1	1579844	0	C	A	bias_e_value=0.0352607	bias_p_value=1.62252e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=129.4	fisher_strand_p_value=7.47542e-10	frequency=3.115e-01	ks_quality_p_value=0.985277	major_base=C	major_cov=34/8	major_frequency=6.885e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=3.115e-01	polymorphism_score=13.5	prediction=polymorphism	ref_cov=34/8	total_cov=34/27
RA	1518	.	1	1582123	0	A	C	consensus_score=209.1	frequency=1	major_base=C	major_cov=25/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/37
RA	1519	.	1	1583272	0	T	C	consensus_score=262.2	frequency=1	major_base=C	major_cov=37/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/38
RA	1520	.	1	1585786	0	A	.	consensus_score=38.8	frequency=1	major_base=.	major_cov=9/1	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/1	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/1
RA	1521	.	1	1585787	0	T	.	consensus_score=38.8	frequency=1	major_base=.	major_cov=9/1	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/1	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/1
RA	1522	.	1	1587704	0	G	A	bias_e_value=0.401199	bias_p_value=1.84612e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=147.2	fisher_strand_p_value=1.08472e-08	frequency=2.400e-01	ks_quality_p_value=0.873946	major_base=G	major_cov=15/42	major_frequency=7.600e-01	minor_base=A	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.400e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=15/42	total_cov=33/42
RA	1523	.	1	1587719	0	G	A	bias_e_value=1781940	bias_p_value=0.819962	consensus_score=197.4	fisher_strand_p_value=0.463768	frequency=1	ks_quality_p_value=0.999574	major_base=A	major_cov=31/37	major_frequency=9.855e-01	minor_base=C	minor_cov=1/0	new_cov=31/37	polymorphism_frequency=9.855e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/37
RA	1524	.	1	1593826	0	C	T	consensus_score=321.9	frequency=1	major_base=T	major_cov=38/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/57
RA	1525	.	1	1597663	0	T	G	consensus_score=269.1	frequency=1	major_base=G	major_cov=34/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/45
RA	1526	.	1	1597756	0	C	G	consensus_score=262.3	frequency=1	major_base=G	major_cov=38/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/38
RA	1527	.	1	1600603	0	C	T	bias_e_value=571.569	bias_p_value=0.000263008	consensus_reject=FREQUENCY_CUTOFF	consensus_score=135.7	fisher_strand_p_value=2.24732e-05	frequency=2.388e-01	ks_quality_p_value=1	major_base=C	major_cov=29/22	major_frequency=7.612e-01	minor_base=T	minor_cov=0/16	new_cov=0/16	polymorphism_frequency=2.388e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=29/22	total_cov=29/38
RA	1528	.	1	1609883	0	C	T	consensus_score=136.8	frequency=1	major_base=T	major_cov=12/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/29
RA	1529	.	1	1614088	0	A	G	consensus_score=185.2	frequency=1	major_base=G	major_cov=32/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/21
RA	1530	.	1	1626302	0	A	C	consensus_score=74.2	frequency=1	major_base=C	major_cov=16/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/9
RA	1531	.	1	1633397	0	C	G	bias_e_value=2173200	bias_p_value=1	consensus_score=292.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=44/43	major_frequency=9.886e-01	minor_base=C	minor_cov=1/0	new_cov=44/43	polymorphism_frequency=9.886e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=45/43
RA	1532	.	1	1637012	0	A	G	consensus_score=285.5	frequency=1	major_base=G	major_cov=38/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/47
RA	1533	.	1	1643279	0	A	G	consensus_score=291.1	frequency=1	major_base=G	major_cov=43/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/43
RA	1534	.	1	1644350	0	C	G	consensus_score=262.8	frequency=1	major_base=G	major_cov=40/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/36
RA	1535	.	1	1650811	0	A	T	bias_e_value=824.8	bias_p_value=0.000379532	consensus_reject=FREQUENCY_CUTOFF	consensus_score=76.2	fisher_strand_p_value=3.35824e-05	frequency=3.182e-01	ks_quality_p_value=1	major_base=A	major_cov=20/10	major_frequency=6.818e-01	minor_base=T	minor_cov=0/14	new_cov=0/14	polymorphism_frequency=3.182e-01	polymorphism_score=13.6	prediction=polymorphism	ref_cov=20/10	total_cov=20/24
RA	1536	.	1	1652525	0	G	A	consensus_score=188.3	frequency=1	major_base=A	major_cov=31/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/25
RA	1537	.	1	1659070	0	C	T	consensus_score=21.2	frequency=1	major_base=T	major_cov=3/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/5
RA	1538	.	1	1663713	0	C	T	consensus_score=272.7	frequency=1	major_base=T	major_cov=36/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/44
RA	1539	.	1	1665707	0	C	T	bias_e_value=0.00102968	bias_p_value=4.73808e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=96.7	fisher_strand_p_value=1.84237e-11	frequency=3.521e-01	ks_quality_p_value=1	major_base=C	major_cov=36/10	major_frequency=6.479e-01	minor_base=T	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=3.521e-01	polymorphism_score=22.1	prediction=polymorphism	ref_cov=36/10	total_cov=36/35
RA	1540	.	1	1668467	0	C	T	consensus_score=242.4	frequency=1	major_base=T	major_cov=40/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/32
RA	1541	.	1	1674182	0	A	T	bias_e_value=0.0550958	bias_p_value=2.53524e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=122.5	fisher_strand_p_value=1.17583e-09	frequency=2.549e-01	ks_quality_p_value=1	major_base=A	major_cov=35/3	major_frequency=7.451e-01	minor_base=T	minor_cov=0/13	new_cov=0/13	polymorphism_frequency=2.549e-01	polymorphism_score=11.7	prediction=polymorphism	ref_cov=35/3	total_cov=35/16
RA	1542	.	1	1684799	0	A	C	bias_e_value=0.0486826	bias_p_value=2.24013e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=92.9	fisher_strand_p_value=1.03275e-09	frequency=4.328e-01	ks_quality_p_value=1	major_base=A	major_cov=26/12	major_frequency=5.672e-01	minor_base=C	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=4.328e-01	polymorphism_score=14.9	prediction=polymorphism	ref_cov=26/12	total_cov=26/42
RA	1543	.	1	1685329	0	A	C	consensus_score=316.6	frequency=1	major_base=C	major_cov=44/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/46
RA	1544	.	1	1693043	0	G	A	consensus_score=216.3	frequency=1	major_base=A	major_cov=28/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/36
RA	1545	.	1	1697724	0	C	T	consensus_score=263.8	frequency=1	major_base=T	major_cov=35/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/40
RA	1546	.	1	1704979	0	C	T	consensus_score=317.3	frequency=1	major_base=T	major_cov=53/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/38
RA	1547	.	1	1705447	0	T	C	consensus_score=359.4	frequency=1	major_base=C	major_cov=51/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/55
RA	1548	.	1	1708642	0	T	C	consensus_score=432.3	frequency=1	major_base=C	major_cov=72/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=72/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=72/52
RA	1549	.	1	1711992	0	C	T	bias_e_value=0.0150569	bias_p_value=6.92845e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=190.1	fisher_strand_p_value=3.02293e-10	frequency=2.500e-01	ks_quality_p_value=1	major_base=C	major_cov=22/50	major_frequency=7.500e-01	minor_base=T	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.500e-01	polymorphism_score=17.3	prediction=polymorphism	ref_cov=22/50	total_cov=46/50
RA	1550	.	1	1712279	0	A	G	consensus_score=361.0	frequency=1	major_base=G	major_cov=47/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/55
RA	1551	.	1	1729053	0	T	C	consensus_score=278.7	frequency=1	major_base=C	major_cov=37/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/44
RA	1552	.	1	1742715	0	G	A	bias_e_value=0.00294962	bias_p_value=1.35727e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=162.1	fisher_strand_p_value=5.51255e-11	frequency=2.558e-01	ks_quality_p_value=1	major_base=G	major_cov=49/15	major_frequency=7.442e-01	minor_base=A	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.558e-01	polymorphism_score=11.6	prediction=polymorphism	ref_cov=49/15	total_cov=49/37
RA	1553	.	1	1742761	0	C	T	bias_e_value=0.532338	bias_p_value=2.44955e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=148.9	fisher_strand_p_value=1.27742e-08	frequency=2.250e-01	ks_quality_p_value=1	major_base=C	major_cov=45/17	major_frequency=7.750e-01	minor_base=T	minor_cov=0/18	new_cov=0/18	polymorphism_frequency=2.250e-01	polymorphism_score=14.1	prediction=polymorphism	ref_cov=45/17	total_cov=46/36
RA	1554	.	1	1749134	0	T	C	consensus_score=307.5	frequency=1	major_base=C	major_cov=42/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/50
RA	1555	.	1	1754370	0	A	T	bias_e_value=0.000193813	bias_p_value=8.9183e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=179.2	fisher_strand_p_value=3.24859e-12	frequency=2.500e-01	ks_quality_p_value=1	major_base=A	major_cov=6/48	major_frequency=7.500e-01	minor_base=T	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.500e-01	polymorphism_score=13.6	prediction=polymorphism	ref_cov=6/48	total_cov=24/48
RA	1556	.	1	1754394	0	T	G	bias_e_value=0.00104273	bias_p_value=4.79812e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=172.4	fisher_strand_p_value=1.88534e-11	frequency=2.639e-01	ks_quality_p_value=0.990091	major_base=T	major_cov=8/45	major_frequency=7.361e-01	minor_base=G	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.639e-01	polymorphism_score=11.6	prediction=polymorphism	ref_cov=8/45	total_cov=29/45
RA	1557	.	1	1759086	0	C	T	consensus_score=352.1	frequency=1	major_base=T	major_cov=43/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/59
RA	1558	.	1	1759872	0	C	T	consensus_score=224.4	frequency=1	major_base=T	major_cov=38/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/26
RA	1559	.	1	1762700	0	C	T	consensus_score=289.6	frequency=1	major_base=T	major_cov=46/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/39
RA	1560	.	1	1763543	0	C	T	bias_e_value=11.3676	bias_p_value=5.23079e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=127.6	fisher_strand_p_value=3.31704e-07	frequency=2.821e-01	ks_quality_p_value=0.989977	major_base=C	major_cov=33/23	major_frequency=7.179e-01	minor_base=T	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.821e-01	polymorphism_score=19.7	prediction=polymorphism	ref_cov=33/23	total_cov=33/46
RA	1561	.	1	1763573	0	A	C	bias_e_value=2.59652e-05	bias_p_value=1.19479e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=73.3	fisher_strand_p_value=4.04518e-13	frequency=4.848e-01	ks_quality_p_value=1	major_base=A	major_cov=28/6	major_frequency=5.152e-01	minor_base=C	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=4.848e-01	polymorphism_score=26.7	prediction=polymorphism	ref_cov=28/6	total_cov=28/38
RA	1562	.	1	1763645	0	T	C	consensus_score=215.3	frequency=1	major_base=C	major_cov=26/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/35
RA	1563	.	1	1764488	0	A	G	consensus_score=321.2	frequency=1	major_base=G	major_cov=54/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/44
RA	1564	.	1	1766217	0	A	G	consensus_score=225.3	frequency=1	major_base=G	major_cov=32/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/33
RA	1565	.	1	1766520	0	A	G	consensus_score=308.9	frequency=1	major_base=G	major_cov=42/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/51
RA	1566	.	1	1767078	0	A	G	consensus_score=244.8	frequency=1	major_base=G	major_cov=42/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/30
RA	1567	.	1	1768219	0	T	A	bias_e_value=0.00833086	bias_p_value=3.83345e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=123.3	fisher_strand_p_value=1.62861e-10	frequency=2.909e-01	ks_quality_p_value=1	major_base=T	major_cov=4/35	major_frequency=7.091e-01	minor_base=A	minor_cov=16/0	new_cov=16/0	polymorphism_frequency=2.909e-01	polymorphism_score=11.1	prediction=polymorphism	ref_cov=4/35	total_cov=20/35
RA	1568	.	1	1768588	0	C	T	consensus_score=221.8	frequency=1	major_base=T	major_cov=38/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/27
RA	1569	.	1	1774723	0	G	A	consensus_score=261.3	frequency=1	major_base=A	major_cov=48/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/30
RA	1570	.	1	1779808	0	C	T	consensus_score=269.3	frequency=1	major_base=T	major_cov=38/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/39
RA	1571	.	1	1815215	0	G	A	consensus_score=337.6	frequency=1	major_base=A	major_cov=57/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/43
RA	1572	.	1	1815387	0	T	.	consensus_score=350.7	frequency=1	major_base=.	major_cov=35/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/44
RA	1573	.	1	1815388	0	T	.	consensus_score=350.7	frequency=1	major_base=.	major_cov=35/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/44
RA	1574	.	1	1827628	0	T	C	consensus_score=200.8	frequency=1	major_base=C	major_cov=37/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/23
RA	1575	.	1	1830564	0	T	C	consensus_score=281.8	frequency=1	major_base=C	major_cov=39/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/42
RA	1576	.	1	1842463	0	A	G	consensus_score=324.9	frequency=1	major_base=G	major_cov=52/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/43
RA	1577	.	1	1849791	0	G	A	consensus_score=271.3	frequency=1	major_base=A	major_cov=38/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/41
RA	1578	.	1	1850622	0	G	A	consensus_score=243.2	frequency=1	major_base=A	major_cov=33/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/41
RA	1579	.	1	1851912	0	T	C	consensus_score=270.2	frequency=1	major_base=C	major_cov=37/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/40
RA	1580	.	1	1853043	0	T	C	consensus_score=191.8	frequency=1	major_base=C	major_cov=26/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/31
RA	1581	.	1	1857273	0	C	T	consensus_score=132.0	frequency=1	major_base=T	major_cov=19/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/21
RA	1582	.	1	1868617	0	G	A	consensus_score=206.2	frequency=1	major_base=A	major_cov=38/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/23
RA	1583	.	1	1870546	0	G	A	bias_e_value=2.35554e-05	bias_p_value=1.0839e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=213.7	fisher_strand_p_value=3.65727e-13	frequency=2.336e-01	ks_quality_p_value=1	major_base=G	major_cov=64/18	major_frequency=7.664e-01	minor_base=A	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.336e-01	polymorphism_score=11.4	prediction=polymorphism	ref_cov=64/18	total_cov=64/43
RA	1584	.	1	1870555	0	C	T	bias_e_value=4.44585e-05	bias_p_value=2.04576e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=229.2	fisher_strand_p_value=7.05939e-13	frequency=2.243e-01	ks_quality_p_value=1	major_base=C	major_cov=65/18	major_frequency=7.757e-01	minor_base=T	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.243e-01	polymorphism_score=13.2	prediction=polymorphism	ref_cov=65/18	total_cov=65/42
RA	1585	.	1	1875615	0	A	C	bias_e_value=14.7513	bias_p_value=6.78784e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=90.2	fisher_strand_p_value=4.33703e-07	frequency=3.269e-01	ks_quality_p_value=1	major_base=A	major_cov=25/10	major_frequency=6.731e-01	minor_base=C	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=3.269e-01	polymorphism_score=16.0	prediction=polymorphism	ref_cov=25/10	total_cov=25/27
RA	1586	.	1	1877075	0	C	T	bias_e_value=8.18427e-06	bias_p_value=3.76599e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=106.0	fisher_strand_p_value=1.2255e-13	frequency=3.382e-01	ks_quality_p_value=1	major_base=C	major_cov=5/40	major_frequency=6.618e-01	minor_base=T	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=3.382e-01	polymorphism_score=15.6	prediction=polymorphism	ref_cov=5/40	total_cov=28/40
RA	1587	.	1	1877080	0	C	T	bias_e_value=8.18404e-06	bias_p_value=3.76589e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=107.1	fisher_strand_p_value=1.2255e-13	frequency=3.382e-01	ks_quality_p_value=0.999972	major_base=C	major_cov=5/40	major_frequency=6.618e-01	minor_base=T	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=3.382e-01	polymorphism_score=15.7	prediction=polymorphism	ref_cov=5/40	total_cov=28/40
RA	1588	.	1	1877113	0	T	A	bias_e_value=0.015686	bias_p_value=7.21791e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=153.1	fisher_strand_p_value=3.15512e-10	frequency=2.714e-01	ks_quality_p_value=1	major_base=T	major_cov=10/41	major_frequency=7.286e-01	minor_base=A	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.714e-01	polymorphism_score=10.8	prediction=polymorphism	ref_cov=10/41	total_cov=29/41
RA	1589	.	1	1877438	0	A	G	consensus_score=280.3	frequency=1	major_base=G	major_cov=41/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/40
RA	1590	.	1	1909419	0	C	A	consensus_score=238.4	frequency=1	major_base=A	major_cov=39/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/28
RA	1591	.	1	1909605	0	C	T	consensus_score=285.6	frequency=1	major_base=T	major_cov=49/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/36
RA	1592	.	1	1911434	0	T	C	consensus_score=212.1	frequency=1	major_base=C	major_cov=30/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/34
RA	1593	.	1	1912984	0	T	C	consensus_score=284.9	frequency=1	major_base=C	major_cov=43/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/42
RA	1594	.	1	1926573	0	T	C	consensus_score=378.5	frequency=1	major_base=C	major_cov=38/73	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/73	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/73
RA	1595	.	1	1930537	0	G	A	consensus_score=347.6	frequency=1	major_base=A	major_cov=59/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/40
RA	1596	.	1	1940044	0	T	G	consensus_score=404.6	frequency=1	major_base=G	major_cov=63/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/52
RA	1597	.	1	1942428	0	C	G	bias_e_value=2054430	bias_p_value=0.945347	consensus_reject=FREQUENCY_CUTOFF	consensus_score=21.9	fisher_strand_p_value=0.688156	frequency=4.483e-01	ks_quality_p_value=1	major_base=C	major_cov=12/4	major_frequency=5.517e-01	minor_base=G	minor_cov=8/5	new_cov=8/5	polymorphism_frequency=4.483e-01	polymorphism_score=12.7	prediction=polymorphism	ref_cov=12/4	total_cov=21/9
RA	1598	.	1	1944981	0	C	T	consensus_score=439.9	frequency=1	major_base=T	major_cov=65/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/59
RA	1599	.	1	1955767	0	T	C	consensus_score=254.3	frequency=1	major_base=C	major_cov=35/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/39
RA	1600	.	1	1958744	0	C	T	consensus_score=102.1	frequency=1	major_base=T	major_cov=18/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/13
RA	1601	.	1	1963318	0	A	G	consensus_score=309.3	frequency=1	major_base=G	major_cov=38/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/53
RA	1602	.	1	1966890	0	A	G	consensus_score=266.9	frequency=1	major_base=G	major_cov=30/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/52
RA	1603	.	1	1967333	0	A	G	consensus_score=332.4	frequency=1	major_base=G	major_cov=45/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/50
RA	1604	.	1	1972062	0	C	T	consensus_score=355.3	frequency=1	major_base=T	major_cov=62/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/42
RA	1605	.	1	1973297	0	C	T	bias_e_value=1062.26	bias_p_value=0.000488802	consensus_reject=FREQUENCY_CUTOFF	consensus_score=53.9	fisher_strand_p_value=4.43414e-05	frequency=3.929e-01	ks_quality_p_value=1	major_base=C	major_cov=17/17	major_frequency=6.071e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=3.929e-01	polymorphism_score=16.9	prediction=polymorphism	ref_cov=17/17	total_cov=40/17
RA	1606	.	1	1977442	0	T	A	bias_e_value=4.04451	bias_p_value=1.86108e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=160.6	fisher_strand_p_value=1.09287e-07	frequency=2.063e-01	ks_quality_p_value=1	major_base=T	major_cov=40/10	major_frequency=7.937e-01	minor_base=A	minor_cov=0/13	new_cov=0/13	polymorphism_frequency=2.063e-01	polymorphism_score=25.4	prediction=polymorphism	ref_cov=40/10	total_cov=40/23
RA	1607	.	1	1977461	0	G	A	bias_e_value=11.407	bias_p_value=5.24891e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=121.0	fisher_strand_p_value=3.29594e-07	frequency=2.069e-01	ks_quality_p_value=1	major_base=G	major_cov=37/9	major_frequency=7.931e-01	minor_base=A	minor_cov=0/12	new_cov=0/12	polymorphism_frequency=2.069e-01	polymorphism_score=16.4	prediction=polymorphism	ref_cov=37/9	total_cov=37/21
RA	1608	.	1	1977470	0	G	C	bias_e_value=3.26698	bias_p_value=1.5033e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=140.2	fisher_strand_p_value=8.71175e-08	frequency=2.295e-01	ks_quality_p_value=1	major_base=G	major_cov=37/10	major_frequency=7.705e-01	minor_base=C	minor_cov=0/14	new_cov=0/14	polymorphism_frequency=2.295e-01	polymorphism_score=13.8	prediction=polymorphism	ref_cov=37/10	total_cov=37/24
RA	1609	.	1	1984272	0	A	T	bias_e_value=2.46042	bias_p_value=1.13216e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=143.9	fisher_strand_p_value=6.44857e-08	frequency=2.241e-01	ks_quality_p_value=1	major_base=A	major_cov=8/37	major_frequency=7.759e-01	minor_base=T	minor_cov=13/0	new_cov=13/0	polymorphism_frequency=2.241e-01	polymorphism_score=10.4	prediction=polymorphism	ref_cov=8/37	total_cov=24/37
RA	1610	.	1	1984290	0	A	T	bias_e_value=0.0877483	bias_p_value=4.03774e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=154.3	fisher_strand_p_value=1.91607e-09	frequency=2.727e-01	ks_quality_p_value=1	major_base=A	major_cov=10/38	major_frequency=7.273e-01	minor_base=T	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.727e-01	polymorphism_score=13.7	prediction=polymorphism	ref_cov=10/38	total_cov=28/38
RA	1611	.	1	1986148	0	A	G	consensus_score=294.6	frequency=1	major_base=G	major_cov=34/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/54
RA	1612	.	1	1992825	0	T	C	consensus_score=250.8	frequency=1	major_base=C	major_cov=40/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/35
RA	1613	.	1	1993670	0	G	A	consensus_score=254.6	frequency=1	major_base=A	major_cov=42/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/31
RA	1614	.	1	1999251	0	G	A	bias_e_value=2.30941	bias_p_value=1.06268e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=110.5	fisher_strand_p_value=6.09838e-08	frequency=3.171e-01	ks_quality_p_value=0.98874	major_base=G	major_cov=33/23	major_frequency=6.829e-01	minor_base=A	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=3.171e-01	polymorphism_score=16.0	prediction=polymorphism	ref_cov=33/23	total_cov=33/49
RA	1615	.	1	1999938	0	A	.	consensus_score=331.3	frequency=1	major_base=.	major_cov=33/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/42
RA	1616	.	1	2003409	0	T	A	bias_e_value=4.65414e-09	bias_p_value=2.1416e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=121.0	fisher_strand_p_value=5.57333e-17	frequency=4.103e-01	ks_quality_p_value=1	major_base=T	major_cov=5/41	major_frequency=5.897e-01	minor_base=A	minor_cov=32/0	new_cov=32/0	polymorphism_frequency=4.103e-01	polymorphism_score=37.0	prediction=polymorphism	ref_cov=5/41	total_cov=37/41
RA	1617	.	1	2003438	0	T	A	bias_e_value=0.0549629	bias_p_value=2.52912e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=191.5	fisher_strand_p_value=1.17285e-09	frequency=2.530e-01	ks_quality_p_value=1	major_base=T	major_cov=17/45	major_frequency=7.470e-01	minor_base=A	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.530e-01	polymorphism_score=13.4	prediction=polymorphism	ref_cov=17/45	total_cov=39/45
RA	1618	.	1	2003480	0	T	A	bias_e_value=1.60564e-06	bias_p_value=7.38838e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=185.3	fisher_strand_p_value=2.2795e-14	frequency=3.333e-01	ks_quality_p_value=1	major_base=T	major_cov=11/47	major_frequency=6.667e-01	minor_base=A	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=3.333e-01	polymorphism_score=23.7	prediction=polymorphism	ref_cov=11/47	total_cov=40/47
RA	1619	.	1	2004169	0	T	G	bias_e_value=1.27072e-07	bias_p_value=5.84721e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=226.3	fisher_strand_p_value=1.66938e-15	frequency=2.788e-01	ks_quality_p_value=1	major_base=T	major_cov=14/61	major_frequency=7.212e-01	minor_base=G	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=2.788e-01	polymorphism_score=21.2	prediction=polymorphism	ref_cov=14/61	total_cov=43/61
RA	1620	.	1	2009509	0	G	A	consensus_score=284.0	frequency=1	major_base=A	major_cov=47/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/36
RA	1621	.	1	2017066	0	G	A	consensus_score=231.7	frequency=1	major_base=A	major_cov=36/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/30
RA	1622	.	1	2021854	0	T	A	bias_e_value=187.076	bias_p_value=8.60829e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=47.2	fisher_strand_p_value=6.66333e-06	frequency=3.667e-01	ks_quality_p_value=1	major_base=T	major_cov=16/3	major_frequency=6.333e-01	minor_base=A	minor_cov=0/11	new_cov=0/11	polymorphism_frequency=3.667e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=16/3	total_cov=16/14
RA	1623	.	1	2028272	0	T	G	consensus_score=140.9	frequency=1	major_base=G	major_cov=19/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/23
RA	1624	.	1	2030365	0	C	T	consensus_score=294.8	frequency=1	major_base=T	major_cov=40/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/47
RA	1625	.	1	2031329	0	C	T	consensus_score=108.6	frequency=1	major_base=T	major_cov=17/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/16
RA	1626	.	1	2037376	0	A	G	consensus_score=320.4	frequency=1	major_base=G	major_cov=46/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/48
RA	1627	.	1	2038522	0	G	A	consensus_score=275.9	frequency=1	major_base=A	major_cov=39/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/41
RA	1628	.	1	2043493	0	C	T	consensus_score=253.6	frequency=1	major_base=T	major_cov=40/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/34
RA	1629	.	1	2047863	0	G	A	consensus_score=18.2	frequency=1	major_base=A	major_cov=4/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/3
RA	1630	.	1	2050762	0	T	G	bias_e_value=1.27433e-06	bias_p_value=5.86381e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=165.8	fisher_strand_p_value=1.79592e-14	frequency=3.483e-01	ks_quality_p_value=1	major_base=T	major_cov=12/46	major_frequency=6.517e-01	minor_base=G	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=3.483e-01	polymorphism_score=13.9	prediction=polymorphism	ref_cov=12/46	total_cov=43/46
RA	1631	.	1	2053948	0	A	G	consensus_score=229.7	frequency=1	major_base=G	major_cov=25/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/43
RA	1632	.	1	2060274	0	G	A	consensus_score=172.6	frequency=1	major_base=A	major_cov=26/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/26
RA	1633	.	1	2062767	0	A	G	consensus_score=224.1	frequency=1	major_base=G	major_cov=28/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/38
RA	1634	.	1	2066704	0	C	T	consensus_score=187.7	frequency=1	major_base=T	major_cov=26/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/30
RA	1635	.	1	2069240	0	T	C	consensus_score=226.3	frequency=1	major_base=C	major_cov=23/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/43
RA	1636	.	1	2092541	0	C	A	bias_e_value=0.000206163	bias_p_value=9.48661e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=205.8	fisher_strand_p_value=3.4637e-12	frequency=2.778e-01	ks_quality_p_value=1	major_base=C	major_cov=15/50	major_frequency=7.222e-01	minor_base=A	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.778e-01	polymorphism_score=21.0	prediction=polymorphism	ref_cov=15/50	total_cov=40/50
RA	1637	.	1	2097492	0	C	G	bias_e_value=0.000288696	bias_p_value=1.32844e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=147.4	fisher_strand_p_value=4.91301e-12	frequency=2.727e-01	ks_quality_p_value=1	major_base=C	major_cov=5/43	major_frequency=7.273e-01	minor_base=G	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.727e-01	polymorphism_score=12.0	prediction=polymorphism	ref_cov=5/43	total_cov=23/43
RA	1638	.	1	2098397	0	A	C	consensus_score=302.7	frequency=1	major_base=C	major_cov=46/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/44
RA	1639	.	1	2099495	0	T	C	consensus_score=254.6	frequency=1	major_base=C	major_cov=36/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/39
RA	1640	.	1	2101137	0	T	A	bias_e_value=1.39414	bias_p_value=6.41514e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=182.8	fisher_strand_p_value=3.53284e-08	frequency=2.222e-01	ks_quality_p_value=1	major_base=T	major_cov=42/14	major_frequency=7.778e-01	minor_base=A	minor_cov=0/16	new_cov=0/16	polymorphism_frequency=2.222e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=42/14	total_cov=42/30
RA	1641	.	1	2101350	0	A	G	consensus_score=255.6	frequency=1	major_base=G	major_cov=38/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/34
RA	1642	.	1	2103174	0	G	A	consensus_score=140.1	frequency=1	major_base=A	major_cov=17/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/24
RA	1643	.	1	2104655	0	G	A	bias_e_value=2034790	bias_p_value=0.93631	consensus_score=263.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.665028	major_base=A	major_cov=39/38	major_frequency=9.872e-01	minor_base=T	minor_cov=1/0	new_cov=39/38	polymorphism_frequency=9.872e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=0/0	total_cov=40/38
RA	1644	.	1	2110170	0	G	A	consensus_score=295.9	frequency=1	major_base=A	major_cov=39/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/44
RA	1645	.	1	2110839	0	A	G	consensus_score=307.7	frequency=1	major_base=G	major_cov=45/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/44
RA	1646	.	1	2115149	0	A	G	consensus_score=308.6	frequency=1	major_base=G	major_cov=51/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/36
RA	1647	.	1	2118441	0	C	T	consensus_score=181.7	frequency=1	major_base=T	major_cov=30/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/24
RA	1648	.	1	2119381	0	C	A	consensus_score=229.8	frequency=1	major_base=A	major_cov=38/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/28
RA	1649	.	1	2124700	0	T	G	consensus_score=272.0	frequency=1	major_base=G	major_cov=42/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/36
RA	1650	.	1	2138090	0	C	A	bias_e_value=0.307464	bias_p_value=1.4148e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=174.9	fisher_strand_p_value=7.1619e-09	frequency=2.561e-01	ks_quality_p_value=1	major_base=C	major_cov=42/19	major_frequency=7.439e-01	minor_base=A	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.561e-01	polymorphism_score=17.0	prediction=polymorphism	ref_cov=42/19	total_cov=42/40
RA	1651	.	1	2138106	0	C	A	bias_e_value=0.0570651	bias_p_value=2.62585e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=105.9	fisher_strand_p_value=1.21994e-09	frequency=3.768e-01	ks_quality_p_value=1	major_base=C	major_cov=30/13	major_frequency=6.232e-01	minor_base=A	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=3.768e-01	polymorphism_score=27.3	prediction=polymorphism	ref_cov=30/13	total_cov=30/39
RA	1652	.	1	2141158	0	C	T	consensus_score=272.7	frequency=1	major_base=T	major_cov=32/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/46
RA	1653	.	1	2142945	0	T	C	consensus_score=304.2	frequency=1	major_base=C	major_cov=44/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/45
RA	1654	.	1	2143884	0	A	G	consensus_score=43.2	frequency=1	major_base=G	major_cov=8/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/6
RA	1655	.	1	2149183	0	T	C	consensus_score=299.6	frequency=1	major_base=C	major_cov=38/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/48
RA	1656	.	1	2156556	0	T	A	bias_e_value=33.1938	bias_p_value=1.52742e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=162.4	fisher_strand_p_value=1.03324e-06	frequency=2.568e-01	ks_quality_p_value=1	major_base=T	major_cov=34/21	major_frequency=7.432e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.568e-01	polymorphism_score=12.5	prediction=polymorphism	ref_cov=34/21	total_cov=34/40
RA	1657	.	1	2159261	0	G	A	bias_e_value=0.000115354	bias_p_value=5.30801e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=188.4	fisher_strand_p_value=1.89632e-12	frequency=2.547e-01	ks_quality_p_value=1	major_base=G	major_cov=58/21	major_frequency=7.453e-01	minor_base=A	minor_cov=0/27	new_cov=0/27	polymorphism_frequency=2.547e-01	polymorphism_score=19.3	prediction=polymorphism	ref_cov=58/21	total_cov=58/48
RA	1658	.	1	2159266	0	A	C	bias_e_value=3.45069e-07	bias_p_value=1.58784e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=214.7	fisher_strand_p_value=4.67045e-15	frequency=3.365e-01	ks_quality_p_value=1	major_base=A	major_cov=55/14	major_frequency=6.635e-01	minor_base=C	minor_cov=1/34	new_cov=1/34	polymorphism_frequency=3.365e-01	polymorphism_score=17.9	prediction=polymorphism	ref_cov=55/14	total_cov=56/48
RA	1659	.	1	2159286	0	A	C	bias_e_value=9.72892e-12	bias_p_value=4.47677e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=188.8	fisher_strand_p_value=1.00042e-19	frequency=3.737e-01	ks_quality_p_value=1	major_base=A	major_cov=54/8	major_frequency=6.263e-01	minor_base=C	minor_cov=0/37	new_cov=0/37	polymorphism_frequency=3.737e-01	polymorphism_score=16.2	prediction=polymorphism	ref_cov=54/8	total_cov=54/45
RA	1660	.	1	2162660	0	A	G	consensus_score=251.3	frequency=1	major_base=G	major_cov=32/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/40
RA	1661	.	1	2162705	0	G	A	consensus_score=277.6	frequency=1	major_base=A	major_cov=39/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/43
RA	1662	.	1	2168043	0	T	C	consensus_score=261.1	frequency=1	major_base=C	major_cov=39/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/39
MC	1663	.	1	79054	79074	0	0	left_inside_cov=0	left_outside_cov=55	right_inside_cov=0	right_outside_cov=56
MC	1664	.	1	262879	266166	109	3123	left_inside_cov=22	left_outside_cov=24	right_inside_cov=21	right_outside_cov=23
MC	1665	.	1	696605	701954	5155	139	left_inside_cov=22	left_outside_cov=24	right_inside_cov=22	right_outside_cov=24
MC	1666	.	1	702780	702784	0	0	left_inside_cov=0	left_outside_cov=77	right_inside_cov=0	right_outside_cov=75
MC	1667	.	1	779641	779819	0	0	left_inside_cov=22	left_outside_cov=25	right_inside_cov=22	right_outside_cov=24
MC	1668	.	1	1046829	1046864	0	0	left_inside_cov=0	left_outside_cov=74	right_inside_cov=0	right_outside_cov=74
MC	1669	.	1	1082620	1088067	5227	165	left_inside_cov=21	left_outside_cov=24	right_inside_cov=22	right_outside_cov=23
MC	1670	.	1	1289254	1289321	0	0	left_inside_cov=0	left_outside_cov=94	right_inside_cov=0	right_outside_cov=93
MC	1671	.	1	1442211	1443330	0	0	left_inside_cov=21	left_outside_cov=23	right_inside_cov=22	right_outside_cov=23
MC	1672	.	1	1481357	1496682	0	764	left_inside_cov=0	left_outside_cov=71	right_inside_cov=22	right_outside_cov=24
MC	1673	.	1	1620925	1626218	99	5141	left_inside_cov=22	left_outside_cov=23	right_inside_cov=22	right_outside_cov=23
MC	1674	.	1	1788135	1788399	0	0	left_inside_cov=22	left_outside_cov=24	right_inside_cov=18	right_outside_cov=23
MC	1675	.	1	1892278	1892891	0	0	left_inside_cov=20	left_outside_cov=23	right_inside_cov=22	right_outside_cov=23
MC	1676	.	1	1918116	1918179	0	0	left_inside_cov=1	left_outside_cov=74	right_inside_cov=0	right_outside_cov=74
JC	1677	.	1	1	1	1	2173202	-1	0	alignment_overlap=0	circular_chromosome=1	coverage_minus=45	coverage_plus=51	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=214	key=1__1__1__1__2173202__-1__0____251__251__0__0	max_left=246	max_left_minus=246	max_left_plus=243	max_min_left=123	max_min_left_minus=112	max_min_left_plus=123	max_min_right=124	max_min_right_minus=124	max_min_right_plus=120	max_pos_hash_score=430	max_right=250	max_right_minus=250	max_right_plus=249	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.10	new_junction_read_count=96	polymorphism_frequency=1.000e+00	pos_hash_score=70	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=96
JC	1678	.	1	5604	-1	1	5824	-1	0	alignment_overlap=5	coverage_minus=3	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=209	key=1__5609__-1__1__5824__-1__5____251__251__1__0	max_left=142	max_left_minus=142	max_left_plus=55	max_min_left=55	max_min_left_minus=3	max_min_left_plus=55	max_min_right=87	max_min_right_minus=87	max_min_right_plus=0	max_pos_hash_score=420	max_right=244	max_right_minus=244	max_right_plus=243	neg_log10_pos_hash_p_value=6.2	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=1.000e+00	pos_hash_score=5	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=5	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=5
JC	1679	.	1	6715	1	1	7234	1	0	alignment_overlap=14	coverage_minus=3	coverage_plus=0	flanking_left=251	flanking_right=251	frequency=3.168e-02	junction_possible_overlap_registers=200	key=1__6715__1__1__7220__1__14____251__251__0__0	max_left=180	max_left_minus=180	max_left_plus=0	max_min_left=82	max_min_left_minus=82	max_min_left_plus=0	max_min_right=56	max_min_right_minus=56	max_min_right_plus=0	max_pos_hash_score=402	max_right=191	max_right_minus=191	max_right_plus=0	neg_log10_pos_hash_p_value=7.0	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.168e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.32	side_1_overlap=14	side_1_possible_overlap_registers=214	side_1_read_count=116	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=200	side_2_read_count=75	side_2_redundant=0	total_non_overlap_reads=3
JC	1680	.	1	75715	-1	1	75755	-1	0	alignment_overlap=8	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=2.624e-02	junction_possible_overlap_registers=206	key=1__75715__-1__1__75763__-1__8____251__251__0__0	max_left=91	max_left_minus=91	max_left_plus=5	max_min_left=91	max_min_left_minus=91	max_min_left_plus=5	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=414	max_right=238	max_right_minus=190	max_right_plus=238	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=2.624e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.34	side_1_overlap=8	side_1_possible_overlap_registers=214	side_1_read_count=117	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.30	side_2_overlap=0	side_2_possible_overlap_registers=206	side_2_read_count=110	side_2_redundant=0	total_non_overlap_reads=3
JC	1681	.	1	79053	-1	1	79075	1	0	alignment_overlap=16	coverage_minus=30	coverage_plus=16	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=198	key=1__79053__-1__1__79059__1__16____251__251__0__0	max_left=214	max_left_minus=214	max_left_plus=123	max_min_left=113	max_min_left_minus=105	max_min_left_plus=113	max_min_right=112	max_min_right_minus=88	max_min_right_plus=112	max_pos_hash_score=398	max_right=226	max_right_minus=226	max_right_plus=226	neg_log10_pos_hash_p_value=1.1	new_junction_coverage=0.58	new_junction_read_count=47	polymorphism_frequency=1.000e+00	pos_hash_score=34	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=16	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=198	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=46
JC	1682	.	1	111195	1	1	111705	1	0	alignment_overlap=15	coverage_minus=3	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.485e-02	junction_possible_overlap_registers=199	key=1__111195__1__1__111690__1__15____251__251__0__0	max_left=184	max_left_minus=184	max_left_plus=71	max_min_left=71	max_min_left_minus=42	max_min_left_plus=71	max_min_right=93	max_min_right_minus=93	max_min_right_plus=0	max_pos_hash_score=400	max_right=194	max_right_minus=194	max_right_plus=165	neg_log10_pos_hash_p_value=6.5	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=3.485e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.47	side_1_overlap=15	side_1_possible_overlap_registers=214	side_1_read_count=129	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.93	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=157	side_2_redundant=0	total_non_overlap_reads=5
JC	1683	.	1	158344	-1	1	158437	-1	0	alignment_overlap=7	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=2.687e-02	junction_possible_overlap_registers=207	key=1__158344__-1__1__158444__-1__7____251__251__0__0	max_left=141	max_left_minus=141	max_left_plus=141	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=68	max_min_right_minus=68	max_min_right_plus=68	max_pos_hash_score=416	max_right=68	max_right_minus=68	max_right_plus=68	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=2.687e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.29	side_1_overlap=7	side_1_possible_overlap_registers=214	side_1_read_count=113	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.27	side_2_overlap=0	side_2_possible_overlap_registers=207	side_2_read_count=108	side_2_redundant=0	total_non_overlap_reads=3
JC	1684	.	1	200074	-1	1	200264	-1	0	alignment_overlap=12	coverage_minus=0	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=2.674e-02	junction_possible_overlap_registers=202	key=1__200074__-1__1__200276__-1__12____251__251__0__0	max_left=87	max_left_minus=0	max_left_plus=87	max_min_left=87	max_min_left_minus=0	max_min_left_plus=87	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=406	max_right=155	max_right_minus=0	max_right_plus=155	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=2.674e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.14	side_1_overlap=12	side_1_possible_overlap_registers=214	side_1_read_count=100	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.50	side_2_overlap=0	side_2_possible_overlap_registers=202	side_2_read_count=124	side_2_redundant=0	total_non_overlap_reads=3
JC	1685	.	1	264869	1	1	265008	1	0	alignment_overlap=17	coverage_minus=6	coverage_plus=0	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=197	key=1__264869__1__1__264991__1__17____251__251__1__1	max_left=103	max_left_minus=103	max_left_plus=0	max_min_left=103	max_min_left_minus=103	max_min_left_plus=0	max_min_right=90	max_min_right_minus=90	max_min_right_plus=0	max_pos_hash_score=396	max_right=199	max_right_minus=199	max_right_plus=0	neg_log10_pos_hash_p_value=6.5	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=NA	pos_hash_score=4	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=17	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=6
JC	1686	.	1	264885	-1	1	264990	-1	0	alignment_overlap=17	coverage_minus=3	coverage_plus=9	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=197	key=1__264885__-1__1__265007__-1__17____251__251__1__1	max_left=138	max_left_minus=138	max_left_plus=133	max_min_left=108	max_min_left_minus=107	max_min_left_plus=108	max_min_right=111	max_min_right_minus=15	max_min_right_plus=111	max_pos_hash_score=396	max_right=217	max_right_minus=217	max_right_plus=111	neg_log10_pos_hash_p_value=4.6	new_junction_coverage=0.15	new_junction_read_count=12	polymorphism_frequency=NA	pos_hash_score=9	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=17	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=12
JC	1687	.	1	265821	-1	1	265958	-1	0	alignment_overlap=3	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=211	key=1__265821__-1__1__265961__-1__3____251__251__1__1	max_left=162	max_left_minus=85	max_left_plus=162	max_min_left=115	max_min_left_minus=85	max_min_left_plus=115	max_min_right=86	max_min_right_minus=0	max_min_right_plus=86	max_pos_hash_score=424	max_right=133	max_right_minus=86	max_right_plus=133	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=NA	pos_hash_score=3	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=3	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	1688	.	1	278026	-1	1	278027	1	-3	alignment_overlap=-3	coverage_minus=33	coverage_plus=34	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=211	key=1__278026__-1__1__278027__1__-3__AAT__251__251__0__0	max_left=242	max_left_minus=242	max_left_plus=211	max_min_left=122	max_min_left_minus=108	max_min_left_plus=122	max_min_right=111	max_min_right_minus=111	max_min_right_plus=111	max_pos_hash_score=418	max_right=231	max_right_minus=231	max_right_plus=219	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.79	new_junction_read_count=68	polymorphism_frequency=1.000e+00	pos_hash_score=52	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=3	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=211	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=67	unique_read_sequence=AAT
JC	1689	.	1	280113	1	1	280278	1	0	alignment_overlap=10	coverage_minus=3	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=7.271e-02	junction_possible_overlap_registers=204	key=1__280113__1__1__280268__1__10____251__251__0__0	max_left=97	max_left_minus=97	max_left_plus=97	max_min_left=97	max_min_left_minus=97	max_min_left_plus=97	max_min_right=75	max_min_right_minus=75	max_min_right_plus=45	max_pos_hash_score=410	max_right=117	max_right_minus=117	max_right_plus=117	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=7.271e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=74	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.68	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=57	side_2_redundant=0	total_non_overlap_reads=5
JC	1690	.	1	287463	1	1	287570	1	0	alignment_overlap=11	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.834e-02	junction_possible_overlap_registers=203	key=1__287463__1__1__287559__1__11____251__251__0__0	max_left=88	max_left_minus=88	max_left_plus=88	max_min_left=88	max_min_left_minus=88	max_min_left_plus=86	max_min_right=70	max_min_right_minus=0	max_min_right_plus=70	max_pos_hash_score=408	max_right=154	max_right_minus=154	max_right_plus=147	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=3.834e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.19	side_1_overlap=11	side_1_possible_overlap_registers=214	side_1_read_count=104	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.23	side_2_overlap=0	side_2_possible_overlap_registers=203	side_2_read_count=102	side_2_redundant=0	total_non_overlap_reads=4
JC	1691	.	1	367595	1	1	367939	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=3.148e-02	junction_possible_overlap_registers=202	key=1__367595__1__1__367927__1__12____251__251__0__0	max_left=147	max_left_minus=147	max_left_plus=85	max_min_left=85	max_min_left_minus=65	max_min_left_plus=85	max_min_right=92	max_min_right_minus=92	max_min_right_plus=0	max_pos_hash_score=406	max_right=154	max_right_minus=101	max_right_plus=154	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.148e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.10	side_1_overlap=12	side_1_possible_overlap_registers=214	side_1_read_count=96	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.14	side_2_overlap=0	side_2_possible_overlap_registers=202	side_2_read_count=94	side_2_redundant=0	total_non_overlap_reads=3
JC	1692	.	1	397758	1	1	398314	1	0	alignment_overlap=13	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=2.927e-02	junction_possible_overlap_registers=201	key=1__397758__1__1__398301__1__13____251__251__0__0	max_left=81	max_left_minus=81	max_left_plus=43	max_min_left=81	max_min_left_minus=81	max_min_left_plus=43	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=404	max_right=178	max_right_minus=157	max_right_plus=178	neg_log10_pos_hash_p_value=7.0	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=2.927e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=13	side_1_possible_overlap_registers=214	side_1_read_count=82	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.48	side_2_overlap=0	side_2_possible_overlap_registers=201	side_2_read_count=122	side_2_redundant=0	total_non_overlap_reads=3
JC	1693	.	1	481317	-1	1	481582	-1	0	alignment_overlap=8	coverage_minus=1	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=2.646e-02	junction_possible_overlap_registers=206	key=1__481317__-1__1__481590__-1__8____251__251__0__0	max_left=196	max_left_minus=196	max_left_plus=195	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=82	max_min_right_minus=46	max_min_right_plus=82	max_pos_hash_score=414	max_right=82	max_right_minus=46	max_right_plus=82	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=2.646e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.73	side_1_overlap=8	side_1_possible_overlap_registers=214	side_1_read_count=152	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.75	side_2_overlap=0	side_2_possible_overlap_registers=206	side_2_read_count=148	side_2_redundant=0	total_non_overlap_reads=4
JC	1694	.	1	538959	-1	1	538960	1	-5	alignment_overlap=-5	coverage_minus=59	coverage_plus=44	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=209	key=1__538959__-1__1__538960__1__-5__ATTTT__251__251__0__0	max_left=242	max_left_minus=230	max_left_plus=242	max_min_left=116	max_min_left_minus=112	max_min_left_plus=116	max_min_right=122	max_min_right_minus=113	max_min_right_plus=122	max_pos_hash_score=404	max_right=244	max_right_minus=244	max_right_plus=220	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.24	new_junction_read_count=106	polymorphism_frequency=1.000e+00	pos_hash_score=69	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=8	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=206	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=103	unique_read_sequence=ATTTT
JC	1695	.	1	544851	1	1	544979	1	0	alignment_overlap=5	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=2.139e-02	junction_possible_overlap_registers=209	key=1__544851__1__1__544974__1__5____251__251__0__0	max_left=117	max_left_minus=117	max_left_plus=73	max_min_left=117	max_min_left_minus=117	max_min_left_plus=73	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=420	max_right=173	max_right_minus=129	max_right_plus=173	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=2.139e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.71	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=150	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.50	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=128	side_2_redundant=0	total_non_overlap_reads=3
JC	1696	.	1	579112	-1	1	579899	-1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=3.328e-02	junction_possible_overlap_registers=204	key=1__579112__-1__1__579909__-1__10____251__251__0__0	max_left=138	max_left_minus=138	max_left_plus=70	max_min_left=70	max_min_left_minus=70	max_min_left_plus=70	max_min_right=103	max_min_right_minus=103	max_min_right_plus=0	max_pos_hash_score=410	max_right=146	max_right_minus=146	max_right_plus=142	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.328e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.91	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=80	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.17	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=98	side_2_redundant=0	total_non_overlap_reads=3
JC	1697	.	1	606183	1	1	606299	1	0	alignment_overlap=7	coverage_minus=3	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=3.968e-02	junction_possible_overlap_registers=207	key=1__606183__1__1__606292__1__7____251__251__0__0	max_left=103	max_left_minus=103	max_left_plus=77	max_min_left=103	max_min_left_minus=103	max_min_left_plus=77	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=416	max_right=166	max_right_minus=155	max_right_plus=166	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=3.968e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.19	side_1_overlap=7	side_1_possible_overlap_registers=214	side_1_read_count=104	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.10	side_2_overlap=0	side_2_possible_overlap_registers=207	side_2_read_count=93	side_2_redundant=0	total_non_overlap_reads=4
JC	1698	.	1	640259	-1	1	640745	-1	0	alignment_overlap=5	coverage_minus=2	coverage_plus=7	flanking_left=251	flanking_right=251	frequency=7.278e-02	junction_possible_overlap_registers=209	key=1__640259__-1__1__640750__-1__5____251__251__0__0	max_left=206	max_left_minus=206	max_left_plus=171	max_min_left=57	max_min_left_minus=0	max_min_left_plus=57	max_min_right=100	max_min_right_minus=72	max_min_right_plus=100	max_pos_hash_score=420	max_right=100	max_right_minus=72	max_right_plus=100	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.11	new_junction_read_count=9	polymorphism_frequency=7.278e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.31	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=115	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.37	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=117	side_2_redundant=0	total_non_overlap_reads=9
JC	1699	.	1	660671	1	1	661048	1	0	alignment_overlap=4	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=2.443e-02	junction_possible_overlap_registers=210	key=1__660671__1__1__661044__1__4____251__251__0__0	max_left=228	max_left_minus=194	max_left_plus=228	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=88	max_min_right_minus=88	max_min_right_plus=19	max_pos_hash_score=422	max_right=88	max_right_minus=88	max_right_plus=19	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.443e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.47	side_1_overlap=4	side_1_possible_overlap_registers=214	side_1_read_count=129	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.31	side_2_overlap=0	side_2_possible_overlap_registers=210	side_2_read_count=113	side_2_redundant=0	total_non_overlap_reads=3
JC	1700	.	1	662225	-1	1	662226	1	-4	alignment_overlap=-4	coverage_minus=53	coverage_plus=44	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=210	key=1__662225__-1__1__662226__1__-4__AACA__251__251__0__0	max_left=242	max_left_minus=242	max_left_plus=228	max_min_left=122	max_min_left_minus=120	max_min_left_plus=122	max_min_right=121	max_min_right_minus=121	max_min_right_plus=116	max_pos_hash_score=418	max_right=246	max_right_minus=246	max_right_plus=235	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.13	new_junction_read_count=97	polymorphism_frequency=1.000e+00	pos_hash_score=64	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=2	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=212	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=97	unique_read_sequence=AACA
JC	1701	.	1	692588	-1	1	692910	-1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=5.165e-02	junction_possible_overlap_registers=205	key=1__692588__-1__1__692919__-1__9____251__251__0__0	max_left=129	max_left_minus=129	max_left_plus=122	max_min_left=38	max_min_left_minus=38	max_min_left_plus=0	max_min_right=120	max_min_right_minus=113	max_min_right_plus=120	max_pos_hash_score=412	max_right=120	max_right_minus=120	max_right_plus=120	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.165e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=74	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.91	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=76	side_2_redundant=0	total_non_overlap_reads=4
JC	1702	.	1	702779	-1	1	702785	1	0	alignment_overlap=5	coverage_minus=39	coverage_plus=34	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=209	key=1__702779__-1__1__702780__1__5____251__251__0__0	max_left=244	max_left_minus=238	max_left_plus=244	max_min_left=117	max_min_left_minus=117	max_min_left_plus=106	max_min_right=121	max_min_right_minus=121	max_min_right_plus=119	max_pos_hash_score=420	max_right=245	max_right_minus=212	max_right_plus=245	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.85	new_junction_read_count=73	polymorphism_frequency=1.000e+00	pos_hash_score=49	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=73
JC	1703	.	1	716447	-1	1	716764	-1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.492e-02	junction_possible_overlap_registers=205	key=1__716447__-1__1__716773__-1__9____251__251__0__0	max_left=136	max_left_minus=136	max_left_plus=130	max_min_left=79	max_min_left_minus=58	max_min_left_plus=79	max_min_right=111	max_min_right_minus=106	max_min_right_plus=111	max_pos_hash_score=412	max_right=183	max_right_minus=183	max_right_plus=163	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=3.492e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.32	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=116	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.31	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=110	side_2_redundant=0	total_non_overlap_reads=4
JC	1704	.	1	732073	1	1	732416	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=6.051e-02	junction_possible_overlap_registers=204	key=1__732073__1__1__732406__1__10____251__251__0__0	max_left=195	max_left_minus=195	max_left_plus=169	max_min_left=32	max_min_left_minus=0	max_min_left_plus=32	max_min_right=72	max_min_right_minus=64	max_min_right_plus=72	max_pos_hash_score=410	max_right=213	max_right_minus=64	max_right_plus=213	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=6.051e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.90	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=79	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.33	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=111	side_2_redundant=0	total_non_overlap_reads=5
JC	1705	.	1	753544	-1	1	753627	-1	0	alignment_overlap=8	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.992e-02	junction_possible_overlap_registers=206	key=1__753544__-1__1__753635__-1__8____251__251__0__0	max_left=166	max_left_minus=109	max_left_plus=166	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=77	max_min_right_minus=24	max_min_right_plus=77	max_pos_hash_score=414	max_right=77	max_right_minus=24	max_right_plus=77	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.992e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.82	side_1_overlap=8	side_1_possible_overlap_registers=214	side_1_read_count=72	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.89	side_2_overlap=0	side_2_possible_overlap_registers=206	side_2_read_count=75	side_2_redundant=0	total_non_overlap_reads=3
JC	1706	.	1	807656	1	1	808234	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=5.817e-02	junction_possible_overlap_registers=204	key=1__807656__1__1__808224__1__10____251__251__0__0	max_left=130	max_left_minus=130	max_left_plus=105	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=111	max_min_right_minus=111	max_min_right_plus=104	max_pos_hash_score=410	max_right=111	max_right_minus=111	max_right_plus=104	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.817e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.60	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=53	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.95	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=79	side_2_redundant=0	total_non_overlap_reads=4
JC	1707	.	1	818919	-1	1	819485	-1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=4.217e-02	junction_possible_overlap_registers=204	key=1__818919__-1__1__819495__-1__10____251__251__0__0	max_left=198	max_left_minus=198	max_left_plus=140	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=77	max_min_right_minus=77	max_min_right_plus=77	max_pos_hash_score=410	max_right=77	max_right_minus=77	max_right_plus=77	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.217e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.15	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=101	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.48	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=40	side_2_redundant=0	total_non_overlap_reads=3
JC	1708	.	1	865705	-1	1	865951	-1	0	alignment_overlap=12	coverage_minus=8	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=1.087e-01	junction_possible_overlap_registers=202	key=1__865705__-1__1__865963__-1__12____251__251__0__0	max_left=106	max_left_minus=106	max_left_plus=85	max_min_left=106	max_min_left_minus=106	max_min_left_plus=85	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=406	max_right=221	max_right_minus=221	max_right_plus=153	neg_log10_pos_hash_p_value=4.7	new_junction_coverage=0.12	new_junction_read_count=10	polymorphism_frequency=1.087e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.02	side_1_overlap=12	side_1_possible_overlap_registers=214	side_1_read_count=89	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.97	side_2_overlap=0	side_2_possible_overlap_registers=202	side_2_read_count=80	side_2_redundant=0	total_non_overlap_reads=10
JC	1709	.	1	877165	-1	1	877299	-1	0	alignment_overlap=6	coverage_minus=1	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=4.390e-02	junction_possible_overlap_registers=208	key=1__877165__-1__1__877305__-1__6____251__251__0__0	max_left=198	max_left_minus=74	max_left_plus=198	max_min_left=109	max_min_left_minus=74	max_min_left_plus=109	max_min_right=57	max_min_right_minus=0	max_min_right_plus=57	max_pos_hash_score=418	max_right=136	max_right_minus=136	max_right_plus=136	neg_log10_pos_hash_p_value=6.2	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=4.390e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.31	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=115	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.24	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=106	side_2_redundant=0	total_non_overlap_reads=5
JC	1710	.	1	900474	1	1	900824	1	0	alignment_overlap=11	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.567e-02	junction_possible_overlap_registers=203	key=1__900474__1__1__900813__1__11____251__251__0__0	max_left=204	max_left_minus=204	max_left_plus=179	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=111	max_min_right_minus=36	max_min_right_plus=111	max_pos_hash_score=408	max_right=111	max_right_minus=36	max_right_plus=111	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.567e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.06	side_1_overlap=11	side_1_possible_overlap_registers=214	side_1_read_count=93	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.89	side_2_overlap=0	side_2_possible_overlap_registers=203	side_2_read_count=74	side_2_redundant=0	total_non_overlap_reads=3
JC	1711	.	1	907931	-1	1	908004	-1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=6.173e-02	junction_possible_overlap_registers=205	key=1__907931__-1__1__908013__-1__9____251__251__0__0	max_left=176	max_left_minus=176	max_left_plus=169	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=73	max_min_right_minus=73	max_min_right_plus=73	max_pos_hash_score=412	max_right=73	max_right_minus=73	max_right_plus=73	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=6.173e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.08	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=95	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.73	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=61	side_2_redundant=0	total_non_overlap_reads=5
JC	1712	.	1	970397	-1	1	970398	1	-9	alignment_overlap=-9	coverage_minus=43	coverage_plus=56	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=205	key=1__970397__-1__1__970398__1__-9__TACTTCGTG__251__251__0__0	max_left=236	max_left_minus=232	max_left_plus=236	max_min_left=110	max_min_left_minus=105	max_min_left_plus=110	max_min_right=118	max_min_right_minus=109	max_min_right_plus=118	max_pos_hash_score=396	max_right=238	max_right_minus=238	max_right_plus=234	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.17	new_junction_read_count=98	polymorphism_frequency=1.000e+00	pos_hash_score=59	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=8	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=206	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=99	unique_read_sequence=TACTTCGTG
JC	1713	.	1	1038179	-1	1	1038305	-1	0	alignment_overlap=7	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=5.082e-02	junction_possible_overlap_registers=207	key=1__1038179__-1__1__1038312__-1__7____251__251__0__0	max_left=165	max_left_minus=165	max_left_plus=117	max_min_left=117	max_min_left_minus=0	max_min_left_plus=117	max_min_right=110	max_min_right_minus=110	max_min_right_plus=0	max_pos_hash_score=416	max_right=126	max_right_minus=110	max_right_plus=126	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=5.082e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.67	side_1_overlap=7	side_1_possible_overlap_registers=214	side_1_read_count=59	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.65	side_2_overlap=0	side_2_possible_overlap_registers=207	side_2_read_count=55	side_2_redundant=0	total_non_overlap_reads=3
JC	1714	.	1	1046828	-1	1	1046865	1	0	alignment_overlap=34	coverage_minus=32	coverage_plus=35	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=180	key=1__1046828__-1__1__1046831__1__34____251__251__0__0	max_left=201	max_left_minus=201	max_left_plus=200	max_min_left=103	max_min_left_minus=103	max_min_left_plus=85	max_min_right=105	max_min_right_minus=101	max_min_right_plus=105	max_pos_hash_score=362	max_right=209	max_right_minus=209	max_right_plus=200	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.92	new_junction_read_count=68	polymorphism_frequency=1.000e+00	pos_hash_score=42	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=34	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=180	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=67
JC	1715	.	1	1049829	-1	1	1050077	-1	0	alignment_overlap=8	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=5.427e-02	junction_possible_overlap_registers=206	key=1__1049829__-1__1__1050085__-1__8____251__251__0__0	max_left=156	max_left_minus=156	max_left_plus=41	max_min_left=50	max_min_left_minus=50	max_min_left_plus=41	max_min_right=87	max_min_right_minus=87	max_min_right_plus=0	max_pos_hash_score=414	max_right=201	max_right_minus=129	max_right_plus=201	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.427e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.79	side_1_overlap=8	side_1_possible_overlap_registers=214	side_1_read_count=69	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.87	side_2_overlap=0	side_2_possible_overlap_registers=206	side_2_read_count=73	side_2_redundant=0	total_non_overlap_reads=4
JC	1716	.	1	1162569	-1	1	1162573	-1	0	alignment_overlap=13	coverage_minus=3	coverage_plus=0	flanking_left=251	flanking_right=251	frequency=4.295e-02	junction_possible_overlap_registers=201	key=1__1162569__-1__1__1162586__-1__13____251__251__0__0	max_left=123	max_left_minus=123	max_left_plus=0	max_min_left=75	max_min_left_minus=75	max_min_left_plus=0	max_min_right=114	max_min_right_minus=114	max_min_right_plus=0	max_pos_hash_score=404	max_right=237	max_right_minus=237	max_right_plus=0	neg_log10_pos_hash_p_value=7.0	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.295e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=13	side_1_possible_overlap_registers=214	side_1_read_count=71	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=201	side_2_read_count=67	side_2_redundant=0	total_non_overlap_reads=3
JC	1717	.	1	1180162	-1	1	1180512	-1	0	alignment_overlap=6	coverage_minus=0	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=3.350e-02	junction_possible_overlap_registers=208	key=1__1180162__-1__1__1180518__-1__6____251__251__0__0	max_left=170	max_left_minus=0	max_left_plus=170	max_min_left=84	max_min_left_minus=0	max_min_left_plus=84	max_min_right=75	max_min_right_minus=0	max_min_right_plus=75	max_pos_hash_score=418	max_right=239	max_right_minus=0	max_right_plus=239	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.350e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.18	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=103	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.86	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=73	side_2_redundant=0	total_non_overlap_reads=3
JC	1718	.	1	1188220	1	1	1188514	1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=4.281e-02	junction_possible_overlap_registers=205	key=1__1188220__1__1__1188505__1__9____251__251__0__0	max_left=174	max_left_minus=174	max_left_plus=110	max_min_left=96	max_min_left_minus=18	max_min_left_plus=96	max_min_right=67	max_min_right_minus=67	max_min_right_plus=44	max_pos_hash_score=412	max_right=146	max_right_minus=108	max_right_plus=146	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=4.281e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.12	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=98	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.01	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=85	side_2_redundant=0	total_non_overlap_reads=4
JC	1719	.	1	1246299	-1	1	1246551	-1	0	alignment_overlap=4	coverage_minus=3	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=5.282e-02	junction_possible_overlap_registers=210	key=1__1246299__-1__1__1246555__-1__4____251__251__0__0	max_left=241	max_left_minus=241	max_left_plus=96	max_min_left=97	max_min_left_minus=97	max_min_left_plus=96	max_min_right=18	max_min_right_minus=18	max_min_right_plus=0	max_pos_hash_score=422	max_right=163	max_right_minus=149	max_right_plus=163	neg_log10_pos_hash_p_value=6.3	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=5.282e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.02	side_1_overlap=4	side_1_possible_overlap_registers=214	side_1_read_count=89	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.07	side_2_overlap=0	side_2_possible_overlap_registers=210	side_2_read_count=92	side_2_redundant=0	total_non_overlap_reads=5
JC	1720	.	1	1248961	1	1	1249348	1	0	alignment_overlap=9	coverage_minus=3	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=5.748e-02	junction_possible_overlap_registers=205	key=1__1248961__1__1__1249339__1__9____251__251__0__0	max_left=210	max_left_minus=210	max_left_plus=165	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=110	max_min_right_minus=110	max_min_right_plus=86	max_pos_hash_score=412	max_right=110	max_right_minus=110	max_right_plus=86	neg_log10_pos_hash_p_value=6.2	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=5.748e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.15	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=101	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.19	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=100	side_2_redundant=0	total_non_overlap_reads=6
JC	1721	.	1	1277090	1	1	1277782	1	0	alignment_overlap=7	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.005e-02	junction_possible_overlap_registers=207	key=1__1277090__1__1__1277775__1__7____251__251__0__0	max_left=156	max_left_minus=156	max_left_plus=70	max_min_left=70	max_min_left_minus=0	max_min_left_plus=70	max_min_right=88	max_min_right_minus=88	max_min_right_plus=0	max_pos_hash_score=416	max_right=195	max_right_minus=88	max_right_plus=195	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.005e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.15	side_1_overlap=7	side_1_possible_overlap_registers=214	side_1_read_count=101	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.13	side_2_overlap=0	side_2_possible_overlap_registers=207	side_2_read_count=96	side_2_redundant=0	total_non_overlap_reads=3
JC	1722	.	1	1289253	-1	1	1289322	1	0	alignment_overlap=32	coverage_minus=39	coverage_plus=35	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=182	key=1__1289253__-1__1__1289290__1__32____251__251__0__0	max_left=216	max_left_minus=216	max_left_plus=197	max_min_left=106	max_min_left_minus=96	max_min_left_plus=106	max_min_right=105	max_min_right_minus=105	max_min_right_plus=105	max_pos_hash_score=366	max_right=217	max_right_minus=217	max_right_plus=207	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.99	new_junction_read_count=74	polymorphism_frequency=1.000e+00	pos_hash_score=54	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=32	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=182	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=74
JC	1723	.	1	1295485	1	1	1295731	1	0	alignment_overlap=11	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.238e-02	junction_possible_overlap_registers=203	key=1__1295485__1__1__1295720__1__11____251__251__0__0	max_left=170	max_left_minus=170	max_left_plus=170	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=83	max_min_right_minus=69	max_min_right_plus=83	max_pos_hash_score=408	max_right=83	max_right_minus=69	max_right_plus=83	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.238e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.05	side_1_overlap=11	side_1_possible_overlap_registers=214	side_1_read_count=92	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.11	side_2_overlap=0	side_2_possible_overlap_registers=203	side_2_read_count=92	side_2_redundant=0	total_non_overlap_reads=3
JC	1724	.	1	1301693	1	1	1301820	1	0	alignment_overlap=5	coverage_minus=6	coverage_plus=0	flanking_left=251	flanking_right=251	frequency=5.864e-02	junction_possible_overlap_registers=209	key=1__1301693__1__1__1301815__1__5____251__251__0__0	max_left=119	max_left_minus=119	max_left_plus=0	max_min_left=117	max_min_left_minus=117	max_min_left_plus=0	max_min_right=59	max_min_right_minus=59	max_min_right_plus=0	max_pos_hash_score=420	max_right=129	max_right_minus=129	max_right_plus=0	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=5.864e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.15	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=101	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.10	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=94	side_2_redundant=0	total_non_overlap_reads=6
JC	1725	.	1	1301697	-1	1	1301814	-1	0	alignment_overlap=5	coverage_minus=2	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=5.754e-02	junction_possible_overlap_registers=209	key=1__1301697__-1__1__1301819__-1__5____251__251__0__0	max_left=164	max_left_minus=124	max_left_plus=164	max_min_left=63	max_min_left_minus=58	max_min_left_plus=63	max_min_right=119	max_min_right_minus=119	max_min_right_plus=119	max_pos_hash_score=420	max_right=119	max_right_minus=119	max_right_plus=119	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=5.754e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.20	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=105	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.10	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=94	side_2_redundant=0	total_non_overlap_reads=6
JC	1726	.	1	1337298	1	1	1337282	-1	0	alignment_overlap=28	coverage_minus=18	coverage_plus=35	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=186	key=1__1337298__1__1__1337310__-1__28____251__251__0__0	max_left=221	max_left_minus=186	max_left_plus=221	max_min_left=109	max_min_left_minus=54	max_min_left_plus=109	max_min_right=102	max_min_right_minus=77	max_min_right_plus=102	max_pos_hash_score=374	max_right=217	max_right_minus=213	max_right_plus=217	neg_log10_pos_hash_p_value=0.8	new_junction_coverage=0.70	new_junction_read_count=53	polymorphism_frequency=9.498e-01	pos_hash_score=37	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.03	side_1_overlap=28	side_1_possible_overlap_registers=214	side_1_read_count=3	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.04	side_2_overlap=0	side_2_possible_overlap_registers=186	side_2_read_count=3	side_2_redundant=0	total_non_overlap_reads=53
JC	1727	.	1	1356744	-1	1	1356794	-1	0	alignment_overlap=22	coverage_minus=1	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=5.327e-02	junction_possible_overlap_registers=192	key=1__1356744__-1__1__1356816__-1__22____251__251__0__0	max_left=177	max_left_minus=157	max_left_plus=177	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=51	max_min_right_minus=45	max_min_right_plus=51	max_pos_hash_score=386	max_right=51	max_right_minus=45	max_right_plus=51	neg_log10_pos_hash_p_value=6.4	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.327e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.87	side_1_overlap=22	side_1_possible_overlap_registers=214	side_1_read_count=76	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=192	side_2_read_count=74	side_2_redundant=0	total_non_overlap_reads=4
JC	1728	.	1	1402572	-1	1	1402844	-1	0	alignment_overlap=8	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=5.759e-02	junction_possible_overlap_registers=206	key=1__1402572__-1__1__1402852__-1__8____251__251__0__1	max_left=127	max_left_minus=28	max_left_plus=127	max_min_left=28	max_min_left_minus=28	max_min_left_plus=0	max_min_right=79	max_min_right_minus=0	max_min_right_plus=79	max_pos_hash_score=414	max_right=134	max_right_minus=134	max_right_plus=79	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=5.759e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.58	side_1_overlap=8	side_1_possible_overlap_registers=214	side_1_read_count=51	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	1729	.	1	1423137	1	1	1423350	1	0	alignment_overlap=6	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=5.067e-02	junction_possible_overlap_registers=208	key=1__1423137__1__1__1423344__1__6____251__251__0__0	max_left=102	max_left_minus=102	max_left_plus=64	max_min_left=102	max_min_left_minus=102	max_min_left_plus=64	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=418	max_right=187	max_right_minus=143	max_right_plus=187	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=5.067e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.65	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=57	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.67	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=57	side_2_redundant=0	total_non_overlap_reads=3
JC	1730	.	1	1429288	-1	1	1429480	-1	0	alignment_overlap=9	coverage_minus=1	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=6.534e-02	junction_possible_overlap_registers=205	key=1__1429288__-1__1__1429489__-1__9____251__251__0__0	max_left=168	max_left_minus=57	max_left_plus=168	max_min_left=74	max_min_left_minus=57	max_min_left_plus=74	max_min_right=30	max_min_right_minus=0	max_min_right_plus=30	max_pos_hash_score=412	max_right=185	max_right_minus=185	max_right_plus=138	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=6.534e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.70	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=61	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.67	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=56	side_2_redundant=0	total_non_overlap_reads=4
JC	1731	.	1	1469896	-1	1	1470496	-1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=4.025e-02	junction_possible_overlap_registers=204	key=1__1469896__-1__1__1470506__-1__10____251__251__0__0	max_left=226	max_left_minus=146	max_left_plus=226	max_min_left=92	max_min_left_minus=92	max_min_left_plus=0	max_min_right=94	max_min_right_minus=94	max_min_right_plus=14	max_pos_hash_score=410	max_right=148	max_right_minus=148	max_right_plus=14	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.025e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.72	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=63	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.99	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=83	side_2_redundant=0	total_non_overlap_reads=3
JC	1732	.	1	1471758	1	1	1472016	1	0	alignment_overlap=9	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=4.276e-02	junction_possible_overlap_registers=205	key=1__1471758__1__1__1472007__1__9____251__251__0__0	max_left=213	max_left_minus=47	max_left_plus=213	max_min_left=99	max_min_left_minus=47	max_min_left_plus=99	max_min_right=29	max_min_right_minus=0	max_min_right_plus=29	max_pos_hash_score=412	max_right=161	max_right_minus=161	max_right_plus=143	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.276e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.73	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=64	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.87	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=73	side_2_redundant=0	total_non_overlap_reads=3
JC	1733	.	1	1480268	-1	1	1654597	-1	0	alignment_overlap=5	coverage_minus=3	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=1.005e-01	junction_possible_overlap_registers=209	key=1__1480268__-1__1__1654602__-1__5____251__251__0__1	max_left=142	max_left_minus=142	max_left_plus=55	max_min_left=55	max_min_left_minus=3	max_min_left_plus=55	max_min_right=87	max_min_right_minus=87	max_min_right_plus=0	max_pos_hash_score=420	max_right=244	max_right_minus=244	max_right_plus=243	neg_log10_pos_hash_p_value=6.2	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=1.005e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.63	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=55	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=5
JC	1734	.	1	1481356	-1	1	1488456	1	0	alignment_overlap=3	coverage_minus=30	coverage_plus=33	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=211	key=1__1481356__-1__1__1488453__1__3____251__251__0__1	max_left=239	max_left_minus=239	max_left_plus=235	max_min_left=122	max_min_left_minus=122	max_min_left_plus=118	max_min_right=119	max_min_right_minus=119	max_min_right_plus=98	max_pos_hash_score=424	max_right=243	max_right_minus=237	max_right_plus=243	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.82	new_junction_read_count=71	polymorphism_frequency=1.000e+00	pos_hash_score=46	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=3	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=63
JC	1735	.	1	1565616	-1	1	1566225	-1	0	alignment_overlap=6	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.517e-02	junction_possible_overlap_registers=208	key=1__1565616__-1__1__1566231__-1__6____251__251__0__0	max_left=222	max_left_minus=222	max_left_plus=144	max_min_left=108	max_min_left_minus=0	max_min_left_plus=108	max_min_right=100	max_min_right_minus=23	max_min_right_plus=100	max_pos_hash_score=418	max_right=127	max_right_minus=23	max_right_plus=127	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.517e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.97	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=85	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.96	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=82	side_2_redundant=0	total_non_overlap_reads=3
JC	1736	.	1	1574482	-1	1	1574990	-1	0	alignment_overlap=10	coverage_minus=0	coverage_plus=5	flanking_left=251	flanking_right=251	frequency=6.695e-02	junction_possible_overlap_registers=204	key=1__1574482__-1__1__1575000__-1__10____251__251__0__0	max_left=168	max_left_minus=0	max_left_plus=168	max_min_left=106	max_min_left_minus=0	max_min_left_plus=106	max_min_right=73	max_min_right_minus=0	max_min_right_plus=73	max_pos_hash_score=410	max_right=135	max_right_minus=0	max_right_plus=135	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=6.695e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.89	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=78	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.78	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=65	side_2_redundant=0	total_non_overlap_reads=5
JC	1737	.	1	1629768	1	1	1630011	1	0	alignment_overlap=9	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.842e-02	junction_possible_overlap_registers=205	key=1__1629768__1__1__1630002__1__9____251__251__0__0	max_left=200	max_left_minus=127	max_left_plus=200	max_min_left=70	max_min_left_minus=0	max_min_left_plus=70	max_min_right=115	max_min_right_minus=115	max_min_right_plus=41	max_pos_hash_score=412	max_right=172	max_right_minus=115	max_right_plus=172	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.842e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.76	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=67	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.02	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=86	side_2_redundant=0	total_non_overlap_reads=3
JC	1738	.	1	1691057	-1	1	1691989	-1	0	alignment_overlap=7	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=3.980e-02	junction_possible_overlap_registers=207	key=1__1691057__-1__1__1691996__-1__7____251__251__0__0	max_left=108	max_left_minus=56	max_left_plus=108	max_min_left=108	max_min_left_minus=56	max_min_left_plus=108	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=416	max_right=187	max_right_minus=187	max_right_plus=136	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.980e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.79	side_1_overlap=7	side_1_possible_overlap_registers=214	side_1_read_count=69	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=207	side_2_read_count=78	side_2_redundant=0	total_non_overlap_reads=3
JC	1739	.	1	1692247	1	1	1692370	1	0	alignment_overlap=11	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=3.059e-02	junction_possible_overlap_registers=203	key=1__1692247__1__1__1692359__1__11____251__251__0__0	max_left=103	max_left_minus=103	max_left_plus=41	max_min_left=103	max_min_left_minus=103	max_min_left_plus=41	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=408	max_right=194	max_right_minus=136	max_right_plus=194	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.059e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.08	side_1_overlap=11	side_1_possible_overlap_registers=214	side_1_read_count=95	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.20	side_2_overlap=0	side_2_possible_overlap_registers=203	side_2_read_count=100	side_2_redundant=0	total_non_overlap_reads=3
JC	1740	.	1	1718830	-1	1	1718831	1	-12	alignment_overlap=-12	coverage_minus=117	coverage_plus=169	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=202	key=1__1718830__-1__1__1718831__1__-12__TTCTCTTTCTCT__251__251__0__1	max_left=222	max_left_minus=219	max_left_plus=222	max_min_left=118	max_min_left_minus=118	max_min_left_plus=118	max_min_right=119	max_min_right_minus=117	max_min_right_plus=119	max_pos_hash_score=354	max_right=232	max_right_minus=232	max_right_plus=230	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=3.63	new_junction_read_count=300	polymorphism_frequency=8.088e-01	pos_hash_score=113	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=26	side_1_coverage=0.86	side_1_overlap=0	side_1_possible_overlap_registers=188	side_1_read_count=66	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=286	unique_read_sequence=TTCTCTTTCTCT
JC	1741	.	1	1821798	1	1	1822146	1	0	alignment_overlap=12	coverage_minus=0	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=4.250e-02	junction_possible_overlap_registers=202	key=1__1821798__1__1__1822134__1__12____251__251__0__0	max_left=228	max_left_minus=0	max_left_plus=228	max_min_left=106	max_min_left_minus=0	max_min_left_plus=106	max_min_right=11	max_min_right_minus=0	max_min_right_plus=11	max_pos_hash_score=406	max_right=134	max_right_minus=0	max_right_plus=134	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.250e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=12	side_1_possible_overlap_registers=214	side_1_read_count=68	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.86	side_2_overlap=0	side_2_possible_overlap_registers=202	side_2_read_count=71	side_2_redundant=0	total_non_overlap_reads=3
JC	1742	.	1	1844740	-1	1	1844910	-1	0	alignment_overlap=6	coverage_minus=1	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=6.056e-02	junction_possible_overlap_registers=208	key=1__1844740__-1__1__1844916__-1__6____251__251__0__0	max_left=188	max_left_minus=148	max_left_plus=188	max_min_left=108	max_min_left_minus=0	max_min_left_plus=108	max_min_right=97	max_min_right_minus=97	max_min_right_plus=23	max_pos_hash_score=418	max_right=138	max_right_minus=97	max_right_plus=138	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=6.056e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=68	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.68	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=58	side_2_redundant=0	total_non_overlap_reads=4
JC	1743	.	1	1844773	-1	1	1844880	-1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=6.025e-02	junction_possible_overlap_registers=204	key=1__1844773__-1__1__1844890__-1__10____251__251__0__0	max_left=133	max_left_minus=101	max_left_plus=133	max_min_left=101	max_min_left_minus=101	max_min_left_plus=68	max_min_right=108	max_min_right_minus=0	max_min_right_plus=108	max_pos_hash_score=410	max_right=108	max_right_minus=108	max_right_plus=108	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=6.025e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.79	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=69	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.71	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=59	side_2_redundant=0	total_non_overlap_reads=4
JC	1744	.	1	1868173	-1	1	1868351	-1	0	alignment_overlap=6	coverage_minus=1	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=3.504e-02	junction_possible_overlap_registers=208	key=1__1868173__-1__1__1868357__-1__6____251__251__0__0	max_left=198	max_left_minus=84	max_left_plus=198	max_min_left=84	max_min_left_minus=84	max_min_left_plus=74	max_min_right=47	max_min_right_minus=0	max_min_right_plus=47	max_pos_hash_score=418	max_right=179	max_right_minus=160	max_right_plus=179	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=3.504e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.10	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=96	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.49	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=127	side_2_redundant=0	total_non_overlap_reads=4
JC	1745	.	1	1871475	-1	1	1871846	-1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=2.938e-02	junction_possible_overlap_registers=204	key=1__1871475__-1__1__1871856__-1__10____251__251__0__0	max_left=165	max_left_minus=165	max_left_plus=50	max_min_left=50	max_min_left_minus=0	max_min_left_plus=50	max_min_right=75	max_min_right_minus=75	max_min_right_plus=0	max_pos_hash_score=410	max_right=208	max_right_minus=75	max_right_plus=208	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=2.938e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.18	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=103	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.20	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=100	side_2_redundant=0	total_non_overlap_reads=3
JC	1746	.	1	1881396	-1	1	1881501	-1	0	alignment_overlap=10	coverage_minus=0	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=4.818e-02	junction_possible_overlap_registers=204	key=1__1881396__-1__1__1881511__-1__10____251__251__0__0	max_left=164	max_left_minus=0	max_left_plus=164	max_min_left=45	max_min_left_minus=0	max_min_left_plus=45	max_min_right=105	max_min_right_minus=0	max_min_right_plus=105	max_pos_hash_score=410	max_right=105	max_right_minus=0	max_right_plus=105	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=4.818e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.97	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=85	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=77	side_2_redundant=0	total_non_overlap_reads=4
JC	1747	.	1	1885938	1	1	1887066	1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=4.005e-02	junction_possible_overlap_registers=204	key=1__1885938__1__1__1887056__1__10____251__251__0__0	max_left=168	max_left_minus=168	max_left_plus=150	max_min_left=77	max_min_left_minus=0	max_min_left_plus=77	max_min_right=46	max_min_right_minus=46	max_min_right_plus=46	max_pos_hash_score=410	max_right=164	max_right_minus=46	max_right_plus=164	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.005e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=68	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.95	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=79	side_2_redundant=0	total_non_overlap_reads=3
JC	1748	.	1	1918115	-1	1	1918180	1	0	alignment_overlap=48	coverage_minus=36	coverage_plus=25	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=166	key=1__1918115__-1__1__1918132__1__48____251__251__0__0	max_left=195	max_left_minus=172	max_left_plus=195	max_min_left=89	max_min_left_minus=83	max_min_left_plus=89	max_min_right=101	max_min_right_minus=101	max_min_right_plus=72	max_pos_hash_score=334	max_right=199	max_right_minus=199	max_right_plus=190	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.90	new_junction_read_count=61	polymorphism_frequency=9.937e-01	pos_hash_score=43	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=48	side_1_possible_overlap_registers=214	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=166	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=61
JC	1749	.	1	1939112	1	1	1939280	1	0	alignment_overlap=5	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.471e-02	junction_possible_overlap_registers=209	key=1__1939112__1__1__1939275__1__5____251__251__0__0	max_left=118	max_left_minus=59	max_left_plus=118	max_min_left=59	max_min_left_minus=59	max_min_left_plus=59	max_min_right=106	max_min_right_minus=0	max_min_right_plus=106	max_pos_hash_score=420	max_right=187	max_right_minus=187	max_right_plus=107	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=3.471e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.22	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=107	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.38	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=118	side_2_redundant=0	total_non_overlap_reads=4
JC	1750	.	1	1957173	1	1	1957348	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=3.896e-02	junction_possible_overlap_registers=202	key=1__1957173__1__1__1957336__1__12____251__251__0__0	max_left=117	max_left_minus=117	max_left_plus=87	max_min_left=117	max_min_left_minus=117	max_min_left_plus=87	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=406	max_right=152	max_right_minus=146	max_right_plus=152	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.896e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=12	side_1_possible_overlap_registers=214	side_1_read_count=71	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.98	side_2_overlap=0	side_2_possible_overlap_registers=202	side_2_read_count=81	side_2_redundant=0	total_non_overlap_reads=3
JC	1751	.	1	1986707	1	1	1986861	1	0	alignment_overlap=13	coverage_minus=5	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=9.445e-02	junction_possible_overlap_registers=201	key=1__1986707__1__1__1986848__1__13____251__251__0__0	max_left=82	max_left_minus=43	max_left_plus=82	max_min_left=82	max_min_left_minus=43	max_min_left_plus=82	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=404	max_right=209	max_right_minus=209	max_right_plus=160	neg_log10_pos_hash_p_value=6.5	new_junction_coverage=0.09	new_junction_read_count=7	polymorphism_frequency=9.445e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.71	side_1_overlap=13	side_1_possible_overlap_registers=214	side_1_read_count=62	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=201	side_2_read_count=76	side_2_redundant=0	total_non_overlap_reads=7
JC	1752	.	1	2065871	-1	1	2065991	-1	0	alignment_overlap=8	coverage_minus=1	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=5.909e-02	junction_possible_overlap_registers=206	key=1__2065871__-1__1__2065999__-1__8____251__251__0__0	max_left=187	max_left_minus=165	max_left_plus=187	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=113	max_min_right_minus=54	max_min_right_plus=113	max_pos_hash_score=414	max_right=113	max_right_minus=54	max_right_plus=113	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.909e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.80	side_1_overlap=8	side_1_possible_overlap_registers=214	side_1_read_count=70	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.71	side_2_overlap=0	side_2_possible_overlap_registers=206	side_2_read_count=60	side_2_redundant=0	total_non_overlap_reads=4
JC	1753	.	1	2081550	-1	1	2081551	1	-5	alignment_overlap=-5	coverage_minus=39	coverage_plus=37	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=209	key=1__2081550__-1__1__2081551__1__-5__AGTCC__251__251__0__0	max_left=239	max_left_minus=239	max_left_plus=220	max_min_left=106	max_min_left_minus=106	max_min_left_plus=95	max_min_right=119	max_min_right_minus=119	max_min_right_plus=102	max_pos_hash_score=420	max_right=242	max_right_minus=242	max_right_plus=196	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.89	new_junction_read_count=76	polymorphism_frequency=1.000e+00	pos_hash_score=57	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=76	unique_read_sequence=AGTCC
JC	1754	.	1	2096883	-1	1	2096884	1	-5	alignment_overlap=-5	coverage_minus=53	coverage_plus=52	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=209	key=1__2096883__-1__1__2096884__1__-5__CGCCC__251__251__0__0	max_left=230	max_left_minus=230	max_left_plus=219	max_min_left=122	max_min_left_minus=111	max_min_left_plus=122	max_min_right=121	max_min_right_minus=121	max_min_right_plus=111	max_pos_hash_score=400	max_right=243	max_right_minus=243	max_right_plus=216	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.20	new_junction_read_count=103	polymorphism_frequency=9.904e-01	pos_hash_score=68	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=10	side_1_coverage=0.01	side_1_overlap=0	side_1_possible_overlap_registers=204	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.01	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=105	unique_read_sequence=CGCCC
JC	1755	.	1	2139249	-1	1	2140049	-1	0	alignment_overlap=6	coverage_minus=1	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=5.174e-02	junction_possible_overlap_registers=208	key=1__2139249__-1__1__2140055__-1__6____251__251__0__0	max_left=138	max_left_minus=115	max_left_plus=138	max_min_left=65	max_min_left_minus=0	max_min_left_plus=65	max_min_right=107	max_min_right_minus=107	max_min_right_plus=107	max_pos_hash_score=418	max_right=107	max_right_minus=107	max_right_plus=107	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=5.174e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.11	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=97	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.05	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=89	side_2_redundant=0	total_non_overlap_reads=5
JC	1756	.	1	2162034	-1	1	2162035	1	-3	alignment_overlap=-3	coverage_minus=44	coverage_plus=51	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=211	key=1__2162034__-1__1__2162035__1__-3__CAC__251__251__0__0	max_left=241	max_left_minus=237	max_left_plus=241	max_min_left=119	max_min_left_minus=119	max_min_left_plus=114	max_min_right=116	max_min_right_minus=116	max_min_right_plus=101	max_pos_hash_score=422	max_right=238	max_right_minus=238	max_right_plus=221	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.11	new_junction_read_count=96	polymorphism_frequency=1.000e+00	pos_hash_score=72	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=1	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=213	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=95	unique_read_sequence=CAC
UN	1757	.	1	5371	6092
UN	1758	.	1	79054	79074
UN	1759	.	1	230999	231152
UN	1760	.	1	262936	266130
UN	1761	.	1	266439	268392
UN	1762	.	1	374268	375029
UN	1763	.	1	375032	375032
UN	1764	.	1	412462	414363
UN	1765	.	1	491445	492175
UN	1766	.	1	587120	587840
UN	1767	.	1	679697	679857
UN	1768	.	1	689136	689423
UN	1769	.	1	696691	701870
UN	1770	.	1	702780	702784
UN	1771	.	1	704232	704473
UN	1772	.	1	713285	713958
UN	1773	.	1	779739	779778
UN	1774	.	1	820735	821507
UN	1775	.	1	1009092	1009118
UN	1776	.	1	1009132	1009132
UN	1777	.	1	1009135	1009135
UN	1778	.	1	1009137	1009137
UN	1779	.	1	1009149	1009149
UN	1780	.	1	1009185	1009207
UN	1781	.	1	1044208	1044216
UN	1782	.	1	1044218	1044218
UN	1783	.	1	1044220	1044220
UN	1784	.	1	1044226	1044226
UN	1785	.	1	1044229	1044229
UN	1786	.	1	1044235	1044235
UN	1787	.	1	1044238	1044238
UN	1788	.	1	1046829	1046864
UN	1789	.	1	1082698	1088000
UN	1790	.	1	1088002	1088002
UN	1791	.	1	1109897	1109926
UN	1792	.	1	1289254	1289321
UN	1793	.	1	1337283	1337297
UN	1794	.	1	1442707	1443054
UN	1795	.	1	1481357	1496503
UN	1796	.	1	1528021	1528021
UN	1797	.	1	1620980	1626067
UN	1798	.	1	1648158	1648172
UN	1799	.	1	1654132	1654134
UN	1800	.	1	1654136	1654136
UN	1801	.	1	1654139	1654952
UN	1802	.	1	1654958	1654958
UN	1803	.	1	1719031	1723890
UN	1804	.	1	1788277	1788369
UN	1805	.	1	1889391	1889447
UN	1806	.	1	1889514	1889514
UN	1807	.	1	1889516	1889516
UN	1808	.	1	1889522	1889522
UN	1809	.	1	1889525	1889525
UN	1810	.	1	1889527	1889528
UN	1811	.	1	1890938	1890941
UN	1812	.	1	1890953	1890953
UN	1813	.	1	1891511	1891539
UN	1814	.	1	1891541	1891541
UN	1815	.	1	1891544	1891544
UN	1816	.	1	1891546	1891546
UN	1817	.	1	1892423	1892621
UN	1818	.	1	1892623	1892781
UN	1819	.	1	1894987	1894988
UN	1820	.	1	1894997	1895007
UN	1821	.	1	1918116	1918179
UN	1822	.	1	2047062	2047062
UN	1823	.	1	2047066	2047067