New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	1	= 5604	NA (NA)	6 (0.070)	5/420	6.2	100%	intergenic (–/+128340)	–/unknown	–/tRNA‑Ala‑GGC
	?	1	= 5824	0 (0.000)					intergenic (–/+128120)	–/unknown	–/tRNA‑Ala‑GGC
Rejected: Coverage evenness skew score above cutoff.

CCTCAACGCCCTAAAATAGTGAAGCCAAAGATGAAAAAGAAAGCGATTGAAATCCCGGAACAAACAGACTTTTCCCCAAAAGCGTTTAAAAAGCTGCAACGAGAGCTGGCATTAGCACGTGCACAGATTGCTTACCTAAAGGAGTTGGAGGCACTCGACCGTCAAAAACAGCGACAGAAAAAAGAAAAATCATTGAAAGATTGAAGCCAAATCACGCGTTAAATGACTTACTTCGTGTGGCTAAAATGCCtcgtt‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  1/5355‑5604 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCGTTTTCTATGTCTTTTCTTGCGTAAAATAGAATGAATACCTAACGCATTCATCAGTTTTAACACCGTTTTATGATTCAAATGGAAACCCATTTGACGTAATTTGAGTGTCATTGGGCGATAGCCATCTCGTTTTCTGTTCTTTTTATACCGCAACAAGATAGTTTCTTTTATCTCACGATAATCGTGTTTAACTTGCTGATAATAAAAGATAGAACGAGGCATTTTAGCCACACGAAGTAAGTCATTTAACG  <  1/5824‑5571                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CCTCAACGCCCTAAAATAGTGAAGCCAAAGATGAAAAAGAAAGCGATTGAAATCCCGGAACAAACAGACTTTTCCCCAAAAGCGTTTAAAAAGCTGCAACGAGAGCTGGCATTAGCACGTGCACAGATTGCTTACCTAAAGGAGTTGGAGGCACTCGACCGTCAAAAACAGCGACAGAAAAAAGAAAAATCATTGAAAGATTGAAGCCAAATCACGCGTTAAATGACTTACTTCGTGTGGCTAAAATGCCT                                                                                                                                                                                                                                                               <  1:101510/251‑1 CCTCAACGCCCTAAAATAGTGAAGCCAAAGATGAAAAAGAAAGCGATTGAAATCCCGGAACAAACAGACTTTTCCCCAAAAGCGTTTAAAAAGCTGCAACGAGAGCTGGCATTAGCACGTGCACAGATTGCTTACCTAAAGGAGTTGGAGGCACTCGACCGTCAAAAACAGCGACAGAAAAAAGAAAAATCATTGAAAGATTGAAGCCAAATCACGCGTTAAATGACTTACTTCGTGTGGCTAAAATGCCT                                                                                                                                                                                                                                                               <  1:20198/251‑1 CCTCAACGCCCTAAAATAGTGAAGCCAAAGACGAAAAAGAAAGCGATTGAAATCCCGGAACAAACAGACTTTTCCCCAAAAGCGTTTAAAAAGCTGCAACGAGAGCTGGCATTAGCACGTGCACAGATTGCTTACCTAAAGGAGTTGGAGGCACTCGACCGTCAAAAACAGCGACAGAAAAAAGAAAAATCATTGAAAGATTGAAGCCAAATCACGCGTTAAATGACTTACTTCGTGTGGCTAAAATGCCT                                                                                                                                                                                                                                                               <  1:821345/251‑1                                                                                                             GCATTAGCACGTGCACAGATTGCTTACCTAAAGGAGTTGGAGGCACTCGACCGTCAAAAACAGCGACAGAAAAAAGAAAAATCATTGAAAGATTGAAGCCAAATCACGCGTTAAATGACTTACTTCGTGTGGCTAAAATGCCTCGTTTTCTATGTCTTTTCTTGCGTAAAATAGAATGAATACCTAACGCATTCATCAGTTTTAACACCGTTTTATGATTCAAATGGAAACCCA                                                                                                                                                                    >  1:338931/1‑234                                                                                                                       GTGCACAGATTGCTTACCTAAAGGAGTTGGAGGCACTCGACCGTCAAAAACAGCGACAGAAAAAAGAAAAATCATTGAAAGATTGAAGCCAAATCACGCGTTAAATGACTTACTTCGTGTGGCTAAAATGCCT                                                                                                                                                                                                                                                               >  1:817342/1‑133                                                                                                                                                                                                    AAAGATTGAAGCCAAATCACGCGTTAAATGACTTACTTCGTGTGGCTAAAATGCCTCGTTTTCTATGTCTTTTCTTGCGTAAAATAGAATGAATACCTAACGCATTCATCAGTTTTAACACCGTTTTATGATTCAAATGGAAACCCATTTGACGTAATTTGAGTGTCATTGGGCGATAGCCATCTCGTTTTCTGTTCTTTTTATACCGCAACAAGATAGTTTCTTTTATCTCACGATAATCGTGTTTAACT                                                            <  1:709404/251‑1                                                                                                                                                                                                                                                   gtttTGCCTCGTTTTCTATGTCTTTTCTTGCGTAAAATAGAATGAATACCTAACGCATTCATCAGTTTTAACACCGTTTTATGATTCAAATGGAAACCCATTTGACGTAATTTGAGTGTCATTGGGCGATAGCCATCTCGTTTTCTGTTCTTTTTATACCGCAACAAGATAGTTTCTTTTATCTCACGATAATCGTGTTTAACTTGCTGATAATAAAAGATAGAACGAGGCATTTTAGC                         >  1:456071/5‑239                                                                                                                                                                                                                                                        GCCTCGTTTTCTATGTCTTTTCTTGCGTAAAATAGAATGAATACCTAACGCATTCATCAGTTTTAACACCGTTTTATGATTCAAATGGAAACCCATTTGACGTAATTTGAGTGTCATTGGGCGATAGCCATCTCGTTTTCTGTTCTTTTTATACCGCAACAAGATAGTTTCTTTTATCTCACGATAATCGTGTTTAACTTGCTGATAATAAAAGATAGAACGAGGCATTTTAGCCACACGAAGTAAGTCAT        >  1:847494/1‑251                                                                                                                                                                                                                                                         CCTCGTTTTCTATGTCTTTTCTTGCGTAAAATAGAATGAATACCTAACGCATTCATCAGTTTTAACACCGTTTTATGATTCAAATGGAAACCCATTTGACGTAATTTGAGTGTCATTGGGCGATAGCCATCTCGTTTTCTGTTCTTTTTATACCGCAACAAGATAGTTTCTTTTATCTCACGATAATCGTGTTTAACTTGCTGATAATAAAAGATAGAACGAGGCATTTTAGCCACACGAAGTAAGTCATT       >  1:734988/1‑251                                                                                                                                                                                                                                                         CCTCGTTTTCTATGTCTTTTCTTGCGTAAAATAGAATGAATACCTAACGCATTCATCAGTTTTAACACCGTTTTATGATTCAAATGGAAACCCATTTGACGTAATTTGAGTGTCATTGGGCGATAGCCATCTCGTTTTCTGTTCTTTTTATACCGCAACAAGATAGTTTCTTTTATCTCACGATAATCGTGTTTAACTTGCTGATAATAAAAGATAGAACGAGGCATTTTAGCCACACGAAGTAAGTCAT        <  1:215071/250‑1                                                                                                                                                                                                                                                           TCGTTTTCTATGTCTTTTCTTGCGTAAAATAGAATGAATACCTAACGCATTCATCAGTTTTAACACCGTTTTATGATTCAAATGGAAACCCATTTGACGTAATTTG                                                                                                                                                      <  1:838348/106‑1                                                                                                                                                                                                                                                           TCGTTTTCCATGTCTTTTCTTGCGTAAAATAGAATGAATACCTAACGCATTCATCAGTTTTAACACCGTTTTATGATTCAAATGGAAACCCATTTGACGTAATTTGAGTGTCATTGGGCGATAGCCATCTCGTTTTCTGTTCTTTTTATACCGCAACAAGATAGTTTCTTTTATCTCACGATAATCGTGTTTAACTTGCTGATAATAAAAGAT                                           <  1:131697/213‑1                                                                                                                                                                                                                                                             GTTTTCTATGTCTTTTCTTGCGTAAAATAGAATGAATACCTAACGCATTCATCAGTTTTAACACCGTTTTATGATTCAAATGGAAACCCATTTGACGTAATTTGAGTGTCATTGGGCGATAGCCATCTCGTTTTCTGTTCTTTTTATACCGCAACAAGATAGTTTCTTTTATCTCACGATAATCGTGTTTAAC                                                             >  1:308548/1‑193                                                                                                                                                                                                                                                             GTTTTCTATGTCTTTTCTTGCGTAAAATAGAATGAATACCTAACGCATTCATCAGTTTTAACAC                                                                                                                                                                                              <  1:425020/64‑1                                                                                                                                                                                                                                                              TTTTCTATGTCTTTTCTTGCGTAAAATAGAATGAATACCTAACGCATTCATCAGTTTTAACACCGTTTTATGATTCAAATGGAAACCCATTTGACGTAATTTGAGTGTCATTGGGCGATAGCCATCTCGTTTTCTGTTCTTTTTATACCGCAACAAGATAGTTTCTTTTATCTCACGATAATCGTGTTTAACTTGCTGATAATAAAAGATAGAACGAGGCATTTTAGCCACACGAAGTAAGTCATTTAACG  >  1:491060/1‑251                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CCTCAACGCCCTAAAATAGTGAAGCCAAAGATGAAAAAGAAAGCGATTGAAATCCCGGAACAAACAGACTTTTCCCCAAAAGCGTTTAAAAAGCTGCAACGAGAGCTGGCATTAGCACGTGCACAGATTGCTTACCTAAAGGAGTTGGAGGCACTCGACCGTCAAAAACAGCGACAGAAAAAAGAAAAATCATTGAAAGATTGAAGCCAAATCACGCGTTAAATGACTTACTTCGTGTGGCTAAAATGCCtcgtt‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  1/5355‑5604 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCGTTTTCTATGTCTTTTCTTGCGTAAAATAGAATGAATACCTAACGCATTCATCAGTTTTAACACCGTTTTATGATTCAAATGGAAACCCATTTGACGTAATTTGAGTGTCATTGGGCGATAGCCATCTCGTTTTCTGTTCTTTTTATACCGCAACAAGATAGTTTCTTTTATCTCACGATAATCGTGTTTAACTTGCTGATAATAAAAGATAGAACGAGGCATTTTAGCCACACGAAGTAAGTCATTTAACG  <  1/5824‑5571

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.