| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,684,799 | 0 | A | C | 43.3% | 92.9 / 14.9 | 68 | intergenic (‑58674/‑14745) | unknown/unknown | SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/tRNA‑Ser‑GGA |
| Reads supporting (aligned to +/- strand): ref base A (26/12); new base C (0/29); total (26/42) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.03e-09 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CGCCGGTCGGCATAATTTGCAACTGTGCGTAAGGGCCTAACAAGGCTTTAATCATTTTCACGCCACCAGAGGCTTCCGCCGGGAAGAATTTCACGGTTTCAATACCGACGTCCAACGCGGCTTCAATTGCCATCGGATTGTTTACCCCCGGTGTGATGGGTAACGCTAAATCCTGACATAATTGCACGATTTTA‑GGATTAAATCCCGGTGTGACGACCACATCTGCACCGCTGTTTTTA‑GCGGCGACGACCTGTTCGGCGGTCAATACGG‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACGAATGGCTTCTGCGGCGGCAGGGGAGCGAAAGGTGATTTCCGCCACCGGCAAACCATTTTGCGCCAAGGTGTCTGCCAGAGGTAAAATATCTTCCGCGTTGTCTAAAGCAATCACCGGCACGACTTTTAATTGACGAAATTTTTCAATGAGTTGGTTAGTTGTGTATGACATAAATC > 1/1684551‑1685042 | cgccgGTCGGCATAATTTGCAACTGTGCGTAAGGGCCTAACAAGGCTTTAATCATTTTCACGCCACCAGAGGCTTCCGCCGGGAAGAATTTCACGGTTTCAATACCGACGTCCAACGCGGCTTCAATTGCCATCGGATTGTTTACCCCCGGTGTGATGGGTAACGCTAAATCCTGACATAATTGCACGATTTTA‑GGATTAAATCCCGGTGTGACGACCACATCTGCACCGCTGTTTTTA‑GCGGCGACGAcc < 1:720187/251‑1 (MQ=255) ggTCGGCATAATTTGCAACTGTGCGTAAGGGCCTAACAAGGCTTTAATCATTTTCACGCCACCAGAGGCTTCCGCCGGGAAGAATTTCACGGTTTCAATACCGACGTCCAACGCGGCTTCAATTGCCATCGGATTGTTTACCCCCGGTGTGATGGGTAACGCTAAATCCTGACATAATTGCACGATTTTA‑GGATTAAATCCCGGTGTGACGACCACATCTGCACCGCTGTTTTTA‑GCGGCGACGACCTGtt > 1:684993/1‑251 (MQ=255) tCGGCATAATTTGCAACTGTGCGTAAGGGCCTAACAAGGCTTTAATCATTTTCACGCCACCAGAGGCTTCCGCCGGGAAGAATTTCACGGTTTCAATACCGACGTCCAACGCGGCTTCAATTGCCATCGGATTGTTTACCCCCGGTGTGATGGGTAACGCTAAATCCTGACATAATTGCACGATTTTA‑GGATTAAATCCCGGTGTGACGACCACATCTGCACCGCTGTTTTTA‑GCGGCGACGACCTGTTc < 1:780119/250‑1 (MQ=255) aTTTGCAACTGTGCGTAAGGGCCTAACAAGGCTTTAATCATTTTCACGCCACCAGAGGCTTCCGCCGGGAAGAATTTCACGGTTTCAATACCGACGTCCAACGCGGCTTCAATTGCCATCGGATTGTTTACCCCCGGTGTGATGGGTAACGCTAAATCCTGACATAATTGCACGATTTTA‑GGATTAAATCCCGGTGTGACGACCACATCTGCACCGCTGTTTTTA‑GCGGCGACGACCTGTTCGGCGGTCaa > 1:110613/1‑251 (MQ=255) cAACTGTGCGTAAGGGCCTAACAAGGCTTTAATCATTTTCACGCCACCAGAGGCTTCCGCCGGGAAGAATTTCACGGTTTCAATACCGACGTCCAACGCGGCTTCAATTGCCATCGGATTGTTTACCCCCGGTGTGATGGGTAACGCTAAATCCTGACATAATTGCACGATTTTA‑GGATTAAATCCCGGTGTGACGACCACATCTGCACCGCTGTTTTTA‑GCGGCGACGACCTGTTCGGCGGTCAATACgg < 1:860565/251‑1 (MQ=255) cAACTGTGCGTAAGGGCCTAACAAGGCTTTAATCATTTTCACGCCACCAGAGGCTTCCGCCGGGAAGAATTTCACGGTTTCAATACCGACGTCCAACGCGGCTTCAATTGCCATCGGATTGTTTACCCCCGGTGTGATGGGTAACGCTAAATCCTGACATAATTGCACGATTTTA‑GGATTAAATCCCGGTGTGACGACCACATCTGCACCGCTGTTTTTA‑GCGGCGACGACCTGTTCGGCGGTCAATACgg < 1:851324/251‑1 (MQ=255) cTGTGCGTAAGGGCCTAACAAGGCTTTAATCATTTTCACGCCACCAGAGGCTTCCGCCGGGAAGAATTTCACGGTTTCAATACCGACGTCCAACGCGGCTTCAATTGCCATCGGATTGTTTACCCCCGGTGTGATGGGTAACGCTAAATCCTGACATAATTGCACGATTTTA‑GGATTAAATCCCGGTGTGACGACCACATCTGCACCGCTGTTTTTA‑GCGGCGACGACCTGTTCGGCGGTCAATACGG‑TTc < 1:797171/251‑1 (MQ=255) ccTAACAAGGCTTTAATCATTTTCACGCCACCAGAGGCTTCCGCCGGGAAGAATTTCACGGTTTCAATACCGACGTCCAACGCGGCTTCAATTGCCATCGGATTGTTTACCCCCGGTGTGATGGGTAACGCTAAATCCTGACATAATTGCACGATTTTA‑GGATTAAATCCCGGTGTGACGACCACATCTGCACCGCTGTTTTTA‑GCGGCGACGACCTGTTc > 1:300054/1‑221 (MQ=255) ttcccGCCACCAGAGGCTCCCGCCGGAAAGAATTCCACGTTTTCAATCCCGACGTCAACCGCGGCTTCAATTGCCATCGGTTTGTTTCCCCCCGGGGTGATGGGTAACGCTAAATCCTGACATAATTGCACGTTTTTA‑GGATTAAACCCCGGTGTGACGCCCACATCTGCCCCGCTGTTTTTA‑GCGGCGACGCCCTGTTCGGCGGTCAATACGG‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACg < 1:762579/247‑1 (MQ=255) accaGAGGCTTCCGCCGGGAAGAATTTCACGGTTTCAATACCGACGTCCAACGCGGCTTCAATTGCCATCGGATTGTTTACCCCCGGTGTGATGGGTAACGCTAAATCCTGACATAATTGCACGATTTTA‑GGATTAAATCCCGGTGTGACGACCACATCTGCACCGCTGTTTTTA‑GCGGCGACGACCTGTTCGGCGGTCAATACGG‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATaaa > 1:37011/1‑250 (MQ=255) ccaGAGGCTTCCGCCGGGAAGAATTTCACGGTTTCAATACCGACGTCCAACGCGGCTTCAATTGCCATCGGATTGTTTACCCCCGGTGTGATGGGTAACGCTAAATCCTGACATAATTGCACGATTTTA‑GGATTAAATCCCGGTGTGACGACCACATCTGCACCGCTGTTTTTA‑GCGGCGACGACCTGTTCGGCGGTCAATACGG‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACg > 1:669332/1‑251 (MQ=255) ccaGAGGCTCCCGCCGGGAAGAATTTCACGGTTTCAATCCCGACGTCCAACGCGGCTTCAATTGCCATCGGATTGTTTCCCCCGGGTGTGATGGGTAACGCTAAATCCTGACATAATTGCACGATTTTA‑GGATTAAACCCCGGTGTGACGACCACATCTGCACCGCTGTTTTTA‑GCGGCGACGCCCTGTTCGGCGGTAAATACGG‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACg < 1:67357/251‑1 (MQ=255) gCTTCCGCCGGGAAGAATTTCACGGTTTCAATACCGACGTCCAACGCGGCTTCAATTGCCATCGGATTGTTTCCCCCCGGTGTGATGGGTAACGCTAAACCCTGACATAATTGCACGATTTTA‑GGATTAAATCCCGGTGTGACGACCACATCTGCCCCGCTGTTTTTA‑GCGGCGACGCCCTGTTCGGCGGTCAATCCGG‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACGAATgg < 1:596714/250‑1 (MQ=255) tttCAATACCGACGTCCAACGCGGCTTCAATTGCCATCGGATTGTTTACCCCCGGTGTGATGGGTAACGCTAAATCCTGACATAATTGCACGATTTTA‑GGATTAAATCCCGGTGTGACGACCACATCTGCACCGCTGTTTTTA‑GCGGCGACGACCTGTTcgg < 1:420344/162‑1 (MQ=255) cAATTGCCATCGGATTGTTTACCCCCGGTGTGATGGGTAACGCTAAATCCTGACATAATTGCACGATTTTA‑GGATTAAATCCCGGTGTGACGACCACATCTGCACCGCTGTTTTTA‑GCGGCGACGACCTGTTCGGCGGTCAATACGG‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACGAATGGCTTCTGCGGCGGCAGGGGAGCGAAAGGTGATTTCCGCCACCGGCAAACCAttt > 1:635130/1‑251 (MQ=255) gTTTCCCCCCGGTGTGATGGGTAACGCTAAATCCTGACATAATTGCACGTTTTTA‑GGATTAAATCCCGGTGTGACGCCCACATCTGCCCCGCTGTTTTTA‑GCGGCGACGCCCTGTTCGGCGGTCAATACGG‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACg < 1:123059/168‑1 (MQ=255) gTTTACCCCCGGTGTGATGGGTAACGCTAAATCCTGACATAATTGCACGATTTTA‑GGATTAAATCCCGGTGTGACGACCACATCTGCACCGCTGTTTTTA‑GCGGCGACGACCTGTTCGGCGGTCAATACGG‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACGAATGGCTTCTGCGGCGGCAGGGGAGCGAAAGGTGATTTCCGCCACCGGCAAACCATTTTGCGCCAAGgtgt > 1:105833/1‑248 (MQ=255) ccccccGGTGTGGTGGGTAACGCTAAATCCTGACATAATTGCTGGTTTTTA‑GGATAAAATCCGGGTGCGACGCCCACATCTGCACGGTTGTTTTGC‑GCGGGGACGCCCTGTTCGGCGGTAAATACGG‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACGAATGGCTTCTGCGGCGGCAGGGGAGCGAAAGGTGATTTCCGCCACCGGCAAACCATTTTGCGCCAAGGTGTCTGCCag < 1:766050/250‑1 (MQ=255) cgggTGTGATGGGTACCGATAAATCCTGACATATTTGCACGATTTTA‑GAATTAAATCCGGGTGTGACGACCACATCTGCCCCGCTGTTTTTG‑GCGGCGACGTCCTGTTGGGCGTTCAATACGG‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACGAATGGCTTCTGCGGCGGCAGGGGAGCGAAAGGTGATTTCCGCCACCGGCAAACCATTTTGCGCCAAGGTGTCTGCCAGAGGt < 1:234711/249‑1 (MQ=255) ccGGTGTGATGGGTAACGCTAAATCCTGACATAATTGCACGATTTTA‑GGATTAAATCCCGGTGTGACGACCACATCTGCACCGCTGTTTTTA‑GCGGCGACGACCTGTTCGGCGGTCAATACGG‑TTcc < 1:135347/127‑1 (MQ=255) ggTGTGATGGGTAACGCTAAATCCTGACATAATTGCACGATTTTA‑GGATTAAATCCCGGTGTGACGACCACATCTGCACCGCTGTTTTTA‑GCGGCGACGACCTGTTCGGCGGTCAATACGG‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACGAATGGCTTCTGCGGCGGCAGGGGAGCGAAAGGTGATTTCCGCCACCGGCAAACCATTTTGCGCCAAGGTGTCTGCCAGAGGTaa > 1:221183/1‑251 (MQ=255) gtgtGATGGGTAACGCTAAATCCTGACATAATTGCACGATTTTA‑GGATTAAATCCCGGTGTGACGACCACATCTGCACCGCTGTTTTTA‑GCGGCGACGACCTGTTCGGCGGTCAATACGG‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACGAATGGCTTCTGCGGCGGCAGGGGAGCGAAAGGTGATTTCCGCCACCGGCAAACCATTTTGCGCCAAGGTGTCTGCCAGAGGTaaa > 1:821097/1‑251 (MQ=255) tgtgATGGGTAACGCTAAATCCTGACATAATTGCACGTTTTTA‑GGATTAAATCCGGGTGTGACGCCCACATCTGCCCCGTTTTTTTTG‑GCGGCGACGCCCTGTTCGGCGGTCAATTCGG‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACGAATGGCTTCTGCGGCGGCAGGGGAGCGAAAGGTGATTTCCGCCACCGGCAAACCATTTTGCGCCAAGGTGTCTGCCAGAGGTaaaa < 1:89117/251‑1 (MQ=255) gtgATGGGTAACGCTAAATCCTGACATAATTGCACGTTTTTA‑GGATTAAACCCGGGTGTGACGCCCACATCTGCACCGTTTTTTTTA‑GCGGCGACGCCCTGTTCGGCGGTCAATCCGG‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACg < 1:624749/164‑1 (MQ=255) gtgATGGGTAACGCTAAATCCTGACATAATTGCACGATTTTA‑GGATTAAATCCCGGTGTGACGACCACATCTGCACCGCTGTTTTTA‑GCGGCGACGACCTGTTCGGCGGTCAATACGG‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACGAATGGCTTCTGCGGCGGCAGGGGAGCGAAAGGTGATTTCCGCCACCGGCAAACCATTTTGCGCCAAGGTGTCTGCCAGAGGTAAAat > 1:492177/1‑251 (MQ=255) tgATGGGTAACGCTAAACCCTGACATAATTGCACGTTTTTA‑GGATAAAACCCCGGTGTGACGACCACATCTGCACCGTTGTTTTGA‑GCGGCGACGCCCTGTTCGGCGGTAAATCCGG‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACGAATGGCTTCTGCGGCGGCAGGGGAGCGAAAGGTGATTTCCGCCACCGGCAAACCATTTTGCGCCAAGGTGTCTGCCAGAGGTAAAata < 1:603235/251‑1 (MQ=255) aTGGGTAACGCTAAATCCTGACATAATTGCACGATTTTA‑GGATTAAATCCCGGTGTGACGACCACATCTGCCCCGCTTTTTTTA‑GCGGCGACGACCTGTTCGGCGGTCAATACGG‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACGAATGGCTTCTGCGGCGGCAGGGGAGCGAAAGGTGATTTCCGCCACCGGCAAACCATTTTGCGCCAAGGTGTCTGCCAGAGGTAAAatat < 1:51953/250‑1 (MQ=255) gaaactcaaaaTCCTGACATAATTGCGCG‑TTTTAGGGATTAAATCCGGGTGGGGCGACCACGGCTGCCCCGGT‑TTTTTAGGGGGGGGCGCCGTGTTCGGCGGTAAATGGGG‑TTGCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACGAATGGCTTCTGCGGCGGCAGGGGAGCGAAAGGTGATTTCCGCCACCGGCAAACCATTTTGCGCCAAGGTGTCTGCCAGAGGTAAAATATCTTc < 1:323961/242‑1 (MQ=255) cGCTAAATCCTGACATAATTGCACGATTTTA‑GGATTAAATCCCGGTGTGACGACCACATCTGCACCGCTGTTTTTA‑GCGGCGACGACCTGTTCGGCGGTCAATACGG‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACGAATGGCTTCTgc > 1:96945/1‑165 (MQ=255) tgaaaTAATTGCCCGTTTTTA‑GAATAAAACCCGGGTGTGACGCCCACATCTCCACCGCTGTTTTTA‑GCGGCGACGCCCTGTCCGGCGGTAAAT‑CGGTTTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACGAATGGCTTCTGCGGCGGCAGGGGAGCGAAAGGTGATTTCCGCCACCGGCAAACCATTTTGCGCCAAGGTGTCTGCCAGAGGTAAAATATCTTCCGCGTTGTCTAAAGc < 1:3422/247‑1 (MQ=255) tgaaaTAATTGCACGTTTTTA‑GGTTTAAACCCGGGTGTGACGCCCACATCTCCCCCGCTGTTTTTA‑GCGGCGACGCCCTGTTCGGCGGTAAATCCGG‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACGAATGGCTTCTGCGGCGGCAGGGGAGCGAAAGGTGATTTCCGCCACCGGCAAACCATTTTGCGCCAAGGTGTCTGCCAGAGGTAAAATATCTTCCGCGTTGTCTAAAGc < 1:871357/247‑1 (MQ=255) taaCATAATTGCCCGTTTTTA‑GGATTAACCCCGGGTGGGACGACCACTTCTGCCCCGTTGTTTTTA‑GCGGCGACGCCCTGTTCGGCGGTCAATACGT‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACGAATGGCTTCTGCGGCGGCAGGGGAGCGAAAGGTGATTTCCGCCACCGGCAAACCATTTTGCGCCAAGGTGTCTGCCAGAGGTAAAATATCTTCCGCGTTGTCTAAAGc < 1:370272/249‑1 (MQ=255) tGACATAATTGCACGTTTTTA‑GGATTAAATCCCGGTGTGACGCCCACATCTGCACCGCTTTTTTGA‑GCGGCGACGCCCTGTTCGGCGGTCAATACGG‑TCCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACGAATGGCTTCTGCGGCGGCAGGGGAGCGAAAGGTGATTTCCGCCACCGGCAAACCATTTTGCGCCAAGGTGTCTGCCAGAGGTAAAATATCTTCCGCGTTGTCTAAAGc < 1:521170/251‑1 (MQ=255) tGACATAATTGCACGTTTTTA‑GGATAAACCCCCGGTGTGACGACCCCATCTGCACCGTTTTTTTTA‑GTGGCGACGCCCTGTTCGGCGGTAAATACGG‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACGAATGGCTTCTGCGGCGGCAGGGGAGCGAAAGGTGATTTCCGCCACCGGCAAACCATTTTGCGCCAAGGTGTCTGCCAGAGGTAAAATATCTTCCGCGTTGTCTAAAGc < 1:692794/251‑1 (MQ=255) tGACATAATTGCACGATTTTA‑GGATAAAATCCCGGTGTGACGACCACATCTGCCCCGCTGTTTTGA‑GCGGCGACGCCCTGTGCGGCGGTCAATCCGG‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACGAATGGCTTCTGCGGCGGCAGGGGAGCGAAAGGTGATTTCCGCCACCGGCAAACCATTTTGCGCCAAGGTGTCTGCCAGAGGTAAAATATCTTCCGCGTTGTCTAAAGc < 1:448568/251‑1 (MQ=255) aCATAATGGCCCGTTTTTA‑GGATAAAACCCGGGTGTGACGCCCACATCTGCCCCGTTTTTTTTA‑GCGGCGACGCCCTGTTGGGCGGTCAATGCGT‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACGAATGGCTTCTGCGGCGGCAGGGGAGCGAAAGGTGATTTCCGCCACCGGCAAACCATTTTGCGCCAAGGTGTCTGCCAGAGGTAAAATATCTTCCGCGTTGTCTAAAGcc < 1:813227/250‑2 (MQ=255) tttccACGTTTTTA‑GAATTAACTCCCGGTGTGACGCCCACATCTGCCCCGTTTTTTTTG‑GCGGCGACGCCCTGTTCGGCGGTAAATACGG‑TCCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACGAATGGCTTCTGCGGCGGCAGGGGAGCGAAAGGTGATTTCCGCCACCGGCAAACCATTTTGCGCCAAGGTGTCTGCCAGAGGTAAAATATCTTCCGCGTTGTCTAAAGCAATCAcc < 1:38822/247‑1 (MQ=255) cGATTTTA‑GGATTAAATCCCGGTGTGACGACCACATCTGCACCGCTGTTTTTA‑GCGGCGACGACCTGTTCGGCGGTCAATACGG‑TTCCCGCCGCAATCAGAAATTCCGCGCGCTGTTGACGTAATAAACGAATGGCTTCTGCGGCGGCAGGGGAGCGAAAGGTGATTTCCGCCACCGGCAAACCATTTTGCGCCAAGGTGTCTGCCAGAGGTAAAatat > 1:887079/1‑219 (MQ=255) aTTTTA‑GGATTAAATCCCGGTGTGACGACCACATCTGCACCGCTGTTTTTA‑GCGGCGACGACCTGTTCGGCGGTCAATACGG‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACGAATGGCTTCTGcggcgggaaccgcatttgac > 1:626921/1‑145 (MQ=255) aTTTTA‑GGATTAAATCCCGGTGTGACGACCACATCTGCACCGCTGTTTTTA‑GCGGCGACGACCTGTTCGGCGGTCAATACGG‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACGAATGGCTTCTGCGGCGGCAGGGGAGCGAAAGGTGATTTCCGCCACCGGCAAACCATTTTGCGCCAAGGTGTCTGcc > 1:702180/1‑204 (MQ=255) aTTTTA‑GGATTAAATCCCGGTGTGACGACCACATCTGCACCGCTGTTTTTA‑GCGGCGACGACCTGTTCGGCGGTCAATACGG‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACGAATGGCTTCTGCGGCGGCAGGGGAGCGAAAGGTGATTTCCGCCACCGGCAAACCATTTTGCGCCAAGGTGTCTGCCAGAGGTAAAATATCTTc > 1:393981/1‑221 (MQ=255) aTTTTA‑GGATTAAATCCCGGTGTGACGACCACATCTGCACCGCTGTTTTTA‑GCGGCGACGACCTGTTCGGCGGTCAATACGG‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACGAATGGCTTCTGCGGCGGCAGGGGAGCGAAAGGTGATTTCCGCCACCGGCAAACCATTTTGCGCCAAGGTGTCTGCCAGAGGTAAAATATCTTCCGCGTTGTCTAAAGCAATCACCGGCACGa > 1:218791/1‑250 (MQ=255) aTTTTA‑GGATTAAACCCCGGTGTGACGACCACATCTGCCCCGCTGTTTTTA‑GCGGCGACGACCTGTTCGGCGGTCAATACGG‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACGAATGGCTTCTGCGGCGGCAGGGGAg < 1:822718/153‑1 (MQ=255) ataaaacccgggTGTGACGCCCACATCTCCCCCGCTTTTTTTA‑GCGGCGACGCCTTGTTCGGCGGTCAATACGG‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACGAATGGCTTCTGCGGCGGCAGGGAAGCGAAAGGTGATTTCCGCCACCGGCAAACCATTTTGCGCCAAGGTGTCTGCCAGAGGTAAAATATCTTCCGCGTTGTCTAAAGCAATCACCGGCACGACTTTTAAt < 1:120869/240‑1 (MQ=255) aTTAAACCCGGGTGTGACGCCCACATCTGCCCCGCTTTTTTGA‑GCGGCGACGACCTGTTCGGCGGTCAATACGG‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACGAATGGCTTCTGCGGCGGCAGGGGAGCGAAAGGTGATTTCCGCCACCGGCAAACCATTTTGCGCCAAGGTGTCTGCCAGAGGTAAAATATCTTCCGCGTTGTCTAAAGCAATCACCGGCACGACTTTTAAt < 1:356018/250‑1 (MQ=255) accccGGTGTGACGACCACATCTGCCCCGCTGTTTTTA‑GCGGCGACGCCCTGTTCGGCGGTCAATACGG‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGtaat < 1:437763/108‑1 (MQ=255) gtgtGACGACCACATCTGCACCGCTGTTTTTA‑GCGGCGACGACCTGTTCGGCGGTCAATACGG‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACGAATGGCTTCTGCGGCGGCAGGGGAGCGAAAGGTGATTTCCGCCACCGGCAAACCATTTTGCGCCAAGGTGTCTGCCAGAGGTAAAATATCTTCCGCGTTGTCTAAAGCAATCACCGGCACGACTTTTAATTGACGAAAtttt > 1:228753/1‑251 (MQ=255) tgACGCCCACATCTGCCCCGTTTTTTTTA‑GGGGCGACGCCCTGTTCGGCGGTAAATACGG‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACGAATGGCTTCTGCGGCGGCAGGGGAGCGAAAGGTGATTTCCGCCACCGGCAAACCATTTTGCGCCAAGGTGTCTGCCAGAGGTAAAATATCTTCCGCGTTGTCTAAAGCAATCACCGGCACGACTTTTAATTGACGAAATTTTTc < 1:633058/250‑1 (MQ=255) gacCACATCTGCACCGCTGTTTTTA‑GCGGCGACGACCTGTTCGGCGGTCAATACGG‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACGAATGGCTTCTGCGGCGGCAGGGGAGCGAAAGGTGATTTCCGCCACCGGCAAACCATTTTGCGCCAAGGTGTCTGCCAGAGGTAAAATATCTTCCGCGTTGTCTAAAGCAATCACCGGCACGACTTTTAATTGACGAAATTTTTCAATGa > 1:699139/1‑251 (MQ=255) caTCTGCACCGCTGTTTTTA‑GCGGCGACGCCCTGTTCGGCGGTAAATGCGG‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACGAATGGCTTCTGCGGCGGCAGGGGAGCGAAAGGTGATTTCCGCCACCGGCAAACCATTTTGCGCCAAGGTGTCTGCCAGAGGTAAAATATCTTCCGCGTTGTCTAAAGCAATCACCGGCACGACTTTTAAt < 1:660075/227‑1 (MQ=255) caTCTGCACCGCTGTTTTTA‑GCGGCGACGACCTGTTCGGCGGTCAATACGG‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACGAATGGCTTCTGCGGCGGCAGGGGAGCGAAAGGTGATTTCCGCCACCGGCAAACCATTTTGCGCCAAGGTGTCTGCCAGAGGTAAAATATCTTCCGCGTTGTCTAAAGc > 1:41604/1‑205 (MQ=255) caTCTGCACCGCTGTTTTTA‑GCGGCGACGACCTGTTCGGCGGTCAATACGG‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACGAATGGCTTCTGCGGCGGCAGGGGAGCGAAAGGTGATTTCCGCCACCGGCAAACCATTTTGCGCCAAGGTGTCTGCCAGAGGTAAAATATCTTCCGCGTTGTCTAAAGc > 1:246339/1‑205 (MQ=255) caTCTGCACCGCTGTTTTTA‑GCGGCGACGACCTGTTCGGCGGTCAATACGG‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACGAATGGCTTCTGCGGCGGCAGGGGAGCGAAAGGTGATTTCCGCCACCGGCAAACCATTTTGCGCCAAGGTGTCTGCCAGAGGTAAAATATCTTCCGCGTTGTCTAAAGCAATCACCGGCACGACTTTTAATTGACGAAATTTTTCAATGAGTTgg > 1:94823/1‑251 (MQ=255) caTCTGCACCGCTGTTTTTA‑GCGGCGACGACCTGTTCGGCGGTCAATACGG‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACGAATGGCTTCTGCGGCGGCAGGGGAGCGAAAGGGGATTTCCGCCACCGGCAAACCATTTTGCGCCAAGGTGTCTGCCAGAGGTAAAATATCTTCCGCGTTGTCTAAAGCAATCACCGGCACGACTTTTAATTGACGAAATTTTTCAATGAGTTgg > 1:536669/1‑251 (MQ=255) caTCTGCACCGCTGTTTTTA‑GCGGCGACGACCCGTTCGGCGGTCAATACGG‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACGAATGGCTTCTGCGGCGGCAGGGGAGCGAAAGGTGATTTCCGCCACCGGCAAACCATTTTGCGTCAAGGTGTCTGCCAGAGGTAAAATATcgtc > 1:377938/1‑187 (MQ=255) tctgccccgttttttttA‑GCGGCGACGCCCTGTTCGGCGGTAAATACGG‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACGAATGGCTTCTGCGGCGGCAGGGGAGCGAAAGGTGATTTCCGCCACCGGCAAACCATTTTGCGCCAAGGTGTCTGCCAGAGGTAAAATATCTTCCGCGTTGTCTAAAGCAATCACCGGCACGACTTTTAATTGACGAAATTTTTCAATGAGTTGGtt < 1:537892/239‑1 (MQ=255) tCTGCCCCGCTTTTTTTA‑GCGGCGACGCCCTGTTCGGCGGTCAATACGG‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACGAATGGCTTCTGCGGCGGCAGGGGAGCGAAAGGTGATTTCCGCCACCGGCAAACCATTTTGCGCCAAGGTGTCTGCCAGAGGTAAAATATCTTCCGCGTTGTCTAAAGCAATCACCGGCACGACTTTTAATTGACGAAATTTTTCAATGAGTTGGtt < 1:100644/251‑1 (MQ=255) cTGCACCGCTGTTTTTA‑GCGGCGACGACCTGTTCGGCGGTCAATACGG‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACGAATGGCTTCTGCGGCGGCAGGGGAGCGAAAGGTGATTTCCGCCACCGGCAAACCATTTTGCGCCAAGGCGTCTGCCAGAGGTAAAATATCTTCCGCGTTGTCTAAAGCAATCACCGGCACGACTTTTAATTGACGAAATTTTTCAATGAGTTGGTTa > 1:601679/1‑251 (MQ=255) cTGCACCGCTGTTTTTA‑GCGGCGACGACCTGTTCGGCGGTCAATACGG‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACGAATGGCTTCTGCGGCGGCAGGGGAGCGAAAGGCGATTTCCGCCACCGGCAAACCATTTTGCGCCAAGGTGTCTGCCAGAGGTAAAATATCTTCCGCGTTGTCTAAAGCAATCACCGGCACGACTTTTAATTGACGAAATTTTTCAATGAGTTGGTTa > 1:503181/1‑251 (MQ=255) tgcgccgttttttttA‑GCGGCGACGCCCTGTTCGGCGGTAAATAGGG‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACGAATGGCTTCTGCGGCGGCAGGGGAGCGAAAGGTGATTTCCGCCACCGGCAAACCATTTTGCGCCAAGGTGTCTGCCAGAGGTAAAATATCTTCCGCGTTGTCTAAAGCAATCACCGGCACGACTTTTAATTGACGAAATTTTTCAATGAGTTGGTTAg < 1:537589/241‑1 (MQ=255) tccacgtcTGTTTTTA‑GGGGCGACGCCCTTTTGGGCGTTCAATACGG‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACGAATGGCTTCTGCGGCGGCAGGGGAGCGAAAGGTGATTTCCGCCACCGGCAAACCATTTTGCGCCAAGGTGTCTGCCAGAGGTAAAATATCTTCCGCGTTGTCTAAAGCAATCACCGGCACGACTTTTAATTGACGAAATTTTTCAATGAGTTGGTTAg < 1:613349/244‑1 (MQ=255) cccGCTGTTTTTA‑GCGGCGACGACCTGTTCGGGGGTAAATACGG‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACGAATGGCTTCTGCGGCGGCAGGGGAGCGAAAGGTGATTTCCGCCACCGGCAAACCATTTTGCGCCAAGGTGTCTGCCAGAGGTAAAATATCTTCCGCGTTGTCTAAAGCAATCACCGGCACGACTTTTAATTGACGAAATTTTTCAATGAGTTGGTTAGTtg < 1:846764/250‑1 (MQ=255) gCTGTTTTTA‑GCGGCGACGACCTGTTCGGCGGTCAATACGG‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACGAATGGCTTCTGCGGCGGCAGGGGAGCGAAAGGTGATTTCCGCCACCGGCAAACCATTTTGCGCCAAGGTGTCTGCCAGAGGTAAAATATCTTCCGCGTTGTCTAAAGCAATCACCGGCACGACTTTTAATTGACGAAATTTTTCAAtcatttctttcggcgcgt > 1:220499/1‑234 (MQ=255) tttttttA‑GGGGCGACGCCCTGTTGGGCGGTAAATACGT‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACGAATGGCTTCTGCGGCGGCAGGGGAGCGAAAGGTGATTTCCGCCACCGGCAAACCATTTTGCGCCAAGGTGTCTGCCAGAGGTAAAATATCTTCCGCGTTGTCTAAAGCAATCACCGGCACGACTTTTAATTGACGAAATTTTTCAATGAGTTGGTTAGTTGTGTAt < 1:293184/249‑1 (MQ=255) tttttttA‑GCGGCGACGCCGTTTGCGGGGGTCAATCCGT‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACGAATGGCTTCTGCGGCGGCAGGGGAGCGAAAGGTGATTTCCGCCACCGGCAAACCATTTTGCGCCAAGGTGTCTGCCAGAGGTAAAATATCTTCCGCGTTGTCTAAAGCAATCACCGGCACGACTTTTAATTGACGAAATTTTTCAATGAGTTGGTTAGTTGTGTAt < 1:150432/249‑1 (MQ=255) tttttttA‑GCGGCGACGACCTGTTCGGCGGTCAATACGG‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACGAATGGCTTCTGCGGCGGCAGGGGAGCGAAAGGTGATTTCCGCCACCGGCAAACCATTTTGCGCCAAGGTGTCTGCCAGAGGTAAAATATCTTCCGCGTTGTCTAAAGCAATCACCGGCACGACTTTTAATTGACGAAATTTTTCAATGAGTTGGTTAGTTGTGTAt < 1:274998/249‑1 (MQ=255) ttggcggcgACGCCCTGTTCGGCGGTAAATAGGG‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACGAATGGCTTCTGCGGCGGCAGGGGAGCGAAAGGTGATTTCCGCCACCGGCAAACCATTTTGCGCCAAGGTGTCTGCCAGAGGTAAAATATCTTCCGCGTTGTCTAAAGCAATCACCGGCACGACTTTTAATTGACGAAATTTTTCAATGAGTTGGTTAGTTGTGTATGACAt < 1:687798/248‑1 (MQ=255) gcgACGCCTTGTTCGGCGGTCAATCCGT‑TCCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACGAATGGCTTCTGCGGCGGCAGGGGAGCGAAAGGTGATTTCCGCCACCGGCAAACCATTTTGCGCCAAGGTGTCTGCCAGAGGTAAAATATCTTCCGCGTTGTCTAAAGc < 1:69075/182‑1 (MQ=255) gacCTGTGGGGCGGTCAATACGG‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACGAATGGCTTCTGCGGCGGCAGGGGAGCGAAAGGTGATTTCCGCCACCGGCAAACCATTTTGCGCCAAGGTGTCTGCCAGAGGTAAAATATCTTCCGCGTTGTCTAAAGCAATCACCGGCACGACTTTTAATTGACGAAATTTTTCAATGAGTTGGTTAGTTGTGTATGACATAAATc < 1:40073/245‑1 (MQ=255) | CGCCGGTCGGCATAATTTGCAACTGTGCGTAAGGGCCTAACAAGGCTTTAATCATTTTCACGCCACCAGAGGCTTCCGCCGGGAAGAATTTCACGGTTTCAATACCGACGTCCAACGCGGCTTCAATTGCCATCGGATTGTTTACCCCCGGTGTGATGGGTAACGCTAAATCCTGACATAATTGCACGATTTTA‑GGATTAAATCCCGGTGTGACGACCACATCTGCACCGCTGTTTTTA‑GCGGCGACGACCTGTTCGGCGGTCAATACGG‑TTCCCGCCGCAATCAGAAATTCCGGGCGCTGTTGACGTAATAAACGAATGGCTTCTGCGGCGGCAGGGGAGCGAAAGGTGATTTCCGCCACCGGCAAACCATTTTGCGCCAAGGTGTCTGCCAGAGGTAAAATATCTTCCGCGTTGTCTAAAGCAATCACCGGCACGACTTTTAATTGACGAAATTTTTCAATGAGTTGGTTAGTTGTGTATGACATAAATC > 1/1684551‑1685042 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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |