mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.38.1
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP028101 | 618,209 | 0 | C | G | 68.1% | 204.6 / inf | 359 | noncoding (2881/2928 nt) | C7Y58_03125 | 23S ribosomal RNA |
| * | CP028101 | 1,530,400 | 1 | . | C | 43.9% | 0.1 / 86.4 | 41 | pseudogene (3/325 nt) | C7Y58_07345 | hypothetical protein |
| * | CP028101 | 1,228,379 | 0 | T | . | 43.2% | 74.0 / 54.3 | 37 | intergenic (‑122/‑108) | C7Y58_05905/C7Y58_05910 | hypothetical protein/hypothetical protein |
| * | CP028101 | 1,308,184 | 0 | A | G | 29.3% | 251.3 / 21.2 | 134 | T225T (ACT→ACC) | cobA | uroporphyrinogen‑III C‑methyltransferase |
| * | CP028101 | 216,976 | 0 | T | G | 27.4% | 791.3 / 63.3 | 317 | G513G (GGT→GGG) | C7Y58_01095 | protein translocase subunit SecA |
| * | CP028101 | 1,308,201 | 0 | C | T | 24.6% | 250.3 / 25.0 | 123 | E220K (GAA→AAA) | cobA | uroporphyrinogen‑III C‑methyltransferase |
| * | CP028101 | 2,048,973 | 0 | G | T | 23.5% | 231.7 / 25.1 | 102 | G469G (GGC→GGA) | C7Y58_09935 | helicase SNF |
| * | CP028101 | 1,308,193 | 0 | A | T | 20.3% | 282.6 / 15.4 | 123 | N222K (AAT→AAA) | cobA | uroporphyrinogen‑III C‑methyltransferase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP028101 | 2039308 = | 205 (1.140) | 9 (0.050) | 7/422 | 3.0 | 3.2% | coding (640/3531 nt) | C7Y58_09910 | autotransporter |
| ? | CP028101 | 2039518 = | 357 (2.080) | coding (430/3531 nt) | C7Y58_09910 | autotransporter | |||||
| * | ? | CP028101 | 865498 = | 158 (0.880) | 7 (0.040) | 4/422 | 3.6 | 4.1% | coding (128/1359 nt) | C7Y58_04280 | Trk system potassium transporter TrkA |
| ? | CP028101 | 865618 = | 178 (1.040) | coding (248/1359 nt) | C7Y58_04280 | Trk system potassium transporter TrkA | |||||
| * | ? | CP028101 | 1027344 = | 137 (0.760) | 4 (0.020) | 3/424 | 3.8 | 3.4% | coding (151/810 nt) | C7Y58_04985 | class I SAM‑dependent methyltransferase |
| ? | CP028101 | 1027705 = | 93 (0.540) | coding (10/402 nt) | C7Y58_04990 | DUF1311 domain‑containing protein | |||||
| * | ? | CP028101 | = 1401530 | 310 (1.720) | 3 (0.020) | 3/438 | 3.9 | 0.96% | coding (1300/1854 nt) | C7Y58_06720 | cell surface protein |
| ? | CP028101 | 1401534 = | 312 (1.750) | coding (1304/1854 nt) | C7Y58_06720 | cell surface protein | |||||