Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP028101	1,530,400	1	.	C	43.9%	0.1 / 86.4	41	pseudogene (3/325 nt)	C7Y58_07345	hypothetical protein
Reads supporting (aligned to +/- strand):  ref base . (10/13);  new base C (8/10);  total (18/23)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.21e-01
Rejected as consensus: E-value score below prediction cutoff.
Rejected as consensus: Frequency below/above cutoff threshold.

ACTTTGGAGTGTCAGTAATTAAACCTACATCCCCATATTCTTCCATTTCAATCTGCATCTTAGCTTTTTT‑CTTTTTTCCTTTTGCATAAGAATCTTCATTT‑GTACCAATAAAGATAATAAATGCTAAAATGATTAATAAACAACTTGTACTTTTTAATTTCATATTAAAACTCTCTCCTCTTTTTATTCTATAATAAAACAAACAAATTATAATCTGTATATATTCT‑‑ACCCCCCCCCCC‑‑AGAGAATAAAAA‑TCAAATATATTCTTTA‑TATAGTAAG‑TATAAATAATATATACTAAATTTAAT‑AAATTTTAAAAATTTGCTTAAAATAAAAAAAGGATTAACTCTTGTTTCTTGCAAAAGTCAATCCTTATTA‑GTAAATTAAATATTAAATTTTTTTAAAAATAGTGTGTAAATCCAACTCCAACAACACTGTCATAAAATTTACT‑ATTTTTAGTTCCTCTGTATTGAACATCAAATAATAAATC  >  CP028101/1530162‑1530645                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                             aCTTTTGAGTGTCAGTAATTAAACCTACATCCCCATATTCTTCCATTTCAATCTGCATCTTAGCTTTTTT‑CTTTTTTCCTTTTGCATAAGAATCTTCATTT‑GTACCAATAAAGATAATAAATGCTAAAATGATTAATAAACAACTTGTACTTTTTAATTTCATATTAAAACTCTCTCCTCTTTTTATTCTATAATAAAACAAACAAATTATAATCTGTATATATTCT‑‑ACCCCCCCCCCC‑‑AGAGAATaaaaa                                                                                                                                                                                                                                                 <  1:49177/251‑1 (MQ=255)   tttGGAGTGTCAATTATTTATACTTCATTCCCATATTCTTTCAATTCAATCCTCAATTTAACTTTTTTGTTTTTTTAGTTTTGTATA‑GAATCTTTATTTTGT‑CCAATAAAGATAATAAAATCTAAAATTAATAATAAACAACTTGTACTTTTTAATTTCATATTTAAACTCTCTCCTTTTTTTATCCTATAATAAAACAAAAAAATTATAATTTGTTTATTTTCTTCCCCCCCCCCCCC‑‑AGAGAATaaaaa                                                                                                                                                                                                                                                 <  2:164296/251‑1 (MQ=255)                     aaaCCTTCATTCCCATATTCTTCCATTTCAATCTGCATCTTAGCTTTTTT‑CTTTTTTCCTTTTGCATAAGAATCTTCATTT‑GTACCAATAAAGATAATAAATGCTAAAATGATTAATAAACAACTTGTACTTTTTAATTTCATATTAAAACTCTCTCCTCTTTTTATTCTATAATAAAACAAACAAATTATAATCTGTATATATTCT‑‑ACCCCCCCCCCCC‑AGAGAATAAAAA‑TCAAATATATTCTTta‑tat                                                                                                                                                                                                                            <  2:831751/251‑1 (MQ=255)                       aagacagtCCCCATATTCTTCCATTTCAATCTTCATCTTAGCTTTTTT‑CTTTTTTCCTTTTGCATAAGAATCTTCATTT‑TTACCAATAAAGATAATAAATGCTAAAATGATTAATAAACAACTTGTACTTTTTAATTTCATATTAAAACTCTCTCCTCTTTTTATTCTATAATAAAACAAACAAAATATAATCTGTATATATTCT‑‑ACCCCCCCCCCCC‑AGAGAATAAAAA‑TCAAATATATTCTTTA‑TATag                                                                                                                                                                                                                          <  1:103607/244‑1 (MQ=255)                        acTACATCCCCATATTCTTCCATTTCAATCTGCATCTTAGCTTTTTT‑CTTTTTTCCTTTTGCATAAGAATCTTCATTT‑GTACCAATAAAGATAATATATGCTAAAATGTTTAATATACAACTTGTACTTTTTAATTTCATATTAAAACTCTCTCCTCTTTTTATTCTATAATATAACAAACAAATTATAATCTGTATATATTCT‑‑ACCACCTCCTCC‑‑AGAGAATAAAAT‑TCTATTATATTCTTta‑tatacaa                                                                                                                                                                                                                        >  2:285484/2‑248 (MQ=255)                              tCCCCATATTCTTCCATTTCAATCTGCATCTTAGCTTTTTT‑CTTTTTTCCTTTTGCATAAGAATCTTCATTT‑GTACCAATAAAGATAATAAATGCTAAAATGATTAATAAACAACTTGTACTTTTTAATTTCATATTAAAACTCTCTCCTCTTTTTATTCTATAATAAAACAAACAAATTATAATCTGTATATATTCT‑‑ACCCCCCCCCCCCCAAAAAATAAAAA‑ACAAATATATTTTTtt‑tataaaaataa                                                                                                                                                                                                                    >  2:414389/1‑244 (MQ=255)                              tCCCCATATTCTTCCATTTCAATCTGCATCTTAGCTTTTTT‑CTTTTTTCCTTTTGCATAAGAATCTTCATTT‑GTACCAATAAAGATAATAAATGCTAAAATGATTAATAAACAACTTGTACTTTTTAATTTCATATTAAAACTCTCTCCTCTTTTTATTCTATAATAAAACAAACAAATTATAATCTGTATATATTCT‑‑ACCCCCCCCCCCC‑AGA‑AATAAAAAATAAAATATTTTCTTta‑tatatctctctt                                                                                                                                                                                                                   >  2:103607/1‑243 (MQ=255)                              tCCCCATATTCTTCCATTTCAATCTGCATCTTAGCTTTTTT‑CTTTTTTCCTTTTGCATAAGAATCTTCATTT‑GTACCAATAAAGATAATAAATGCTAAAATGATTAATAAACAACTTGTACTTTTTAATTTCATATTAAAACTCTCTCCTCTTTTTATTCTATAATAAAACAAACAAATTATAATCTGTATATATTCT‑‑ACCCCCCCCCCA‑‑AGAGAATAAAAA‑TCAAATATATTATTTA‑TATAGTAAG‑tata                                                                                                                                                                                                                 >  1:132517/1‑251 (MQ=255)                                  cATATTTTTCCATTTCAATCTGCATCTTAACTTTTTT‑CTTTTTTCCTTTTGCATAAGAATCTTCATTT‑GTACCAATAAAGATAATAAATGCTAAAATGATTAATAAACAACTTGTACTTTTTAATTTCATATTAAAACTCTCTCCTCTTTTTATTCTATAATAAAACAAACAAATTATAATCTGTATATATTCT‑‑ACCCCCCCCCCC‑‑AGAGAATAAAAA‑TCAAATATATTCTTTA‑TATAGTAAG‑Tataaata                                                                                                                                                                                                             <  2:132517/251‑1 (MQ=255)                                  cATATTCCTCCATTTCAATCTGCATCTTAGCTTTTTT‑CTTTTTTCCTTTTGCATAAGAATCTTCATTT‑GTACCAATAAAGATAATAAATGCTAAAATGATTAATAAACAACTTGTACTTTTTAATTTCATATTAAAACTCTCTCCTCTTTTTATTCTATAATAAAACAAACAAATTATAATCTGTATATATTCT‑‑ACCCCCCCCCCC‑‑AGAGAATAAAAA‑TCAAATATATTCTTTA‑TATAGTAAG‑Tataaata                                                                                                                                                                                                             <  1:847632/251‑1 (MQ=255)                                   ctatTCTTCCATTTTAATCTGCATCTTAGCTTTTTT‑CTTTTTTCCTTTTTCATAAGAATCTTCATTT‑GTACCAATAAAGATAATAAATGCTAAAATGATTAATAAACAACTTGTACTTTTTAATTTCATATTAAAACTCTCTCCTCTTTTTATTCTATAATAAAACAAACAAATTATAATCTGTATATATTCT‑‑ACCCCCCCCCCCCCAGAGAATAAAAA‑TCAAATATATTCTTTA‑TATAGTAAG‑Tataaat                                                                                                                                                                                                              <  1:414389/250‑1 (MQ=255)                                   atatTCTTCCATTTCAATCTGCATCTTAGCTTTTTT‑CTTTTTTCCTTTTGCATAAGAATCTTCATTT‑GTACCAATAAAGATAATAAATGCTAAAATGATTAATAAACAACTTGTACTTTTTAATTTCATATTAAAACTCTCTCCTCTTTTTATTCTATAATAAAACAAACAAATTATAATCTGTATATATTCT‑‑ACCCCCCCCCCCC‑AGAGAATAAAAA‑TCAAATATATTCTTTA‑TATAGTAAG‑Tataaata                                                                                                                                                                                                             <  1:214888/251‑1 (MQ=255)                                   atatTCTTCCATTTCAATCTGCATCTTAGCTTTTTT‑CTTTTTTCCTTTTGCATAAGAATCTTCATTT‑GTACCAATAAAGATAATAAATGCTAAAATGATTAATAAACAACTTGTACTTTTTAATTTCATATTAAAACTCTCTCCTCTTTTTATTCTATAATAAAACAAACAAATTATAATCTGTATATATTCT‑‑ACCCCCCCCCCC‑‑AGAGAATAAAAA‑TCAAATATATTCTTTA‑TATAGTAAG‑Tataaataa                                                                                                                                                                                                            <  1:24111/251‑1 (MQ=255)                                   atatTCTTCCATTTAAATCTTCAATTTAGCGTTTTT‑CTTTTTTCCTTTTGCATAAGAATCTTCATTT‑TTAACAATAAAGATAATAAATGCTAAAATGATTAATAAACAACTTGTACTTTTTAAATTCAAATTAAAACTCTCTCCTCTTTTTATTCTATAATAAAACAAACAAATTATAATCTGTATATATTCT‑‑ACCCCCCCCCCCC‑AGAGAATAAAAA‑TCAAATATATTCTTTA‑TATAGTAAG‑Tataaata                                                                                                                                                                                                             <  2:153047/251‑1 (MQ=255)                                   atatTCTTACATTTCAATCTACATCTTAGCATTTTT‑CATTTTTACATTTGCATAAAAAACATCATTT‑GTACCAATAAAGATAATAAATGCTAAAATGATTAATAAACAACTTGTAATTTTTAAATTCATATTAAAACTCTCTCCTCTTTTTATTCTATAATAAAACAAACAAATTATAAACTGTATATATTCT‑‑ACCCCCACCCCC‑‑AGAGAATAAAAA‑TCAAATATATTCTTTA‑TATAGTAAG‑Tataaataa                                                                                                                                                                                                            <  2:124531/251‑1 (MQ=255)                                      ttcatacaattCAATCTGCATCTTAGCTTTTAT‑CTTTATTCCTTTTGCATAAGAAACATCATGT‑GTACCAAAAAAGATAATAAATGCTAAAATGATTAATAAACAACTTGTAATTTTTAAATACATAATAAAACTCTCTCCTCTTTTTATTCTAAAATAAAACAAACAAAATATAATCTGTATATATTCT‑‑ACCCCCCCCCCC‑‑AGAGAATAAAAA‑TCAAATATATTCTTTA‑TATAGTAAG‑TATAAATAatat                                                                                                                                                                                                         <  1:285484/242‑1 (MQ=255)                                       tcttcCATTTCAATCTGCATGTTAGCTTTTTT‑ATTTTTTCCTTTTGCATAAGAGTCTTCATTT‑TTACCAATAAAGATAATAAATGCTAAAATGATTAATAAACAACTTGTACTTTTTAATTTCATATTAAAACTCTCTCCTCTTTTTATTCTATAATAAAACAAACAAATTATAAACTGTATATATTCT‑‑ACCCCCCCCCCCC‑AGAGAATAAAAA‑TCAAATATATTCTTTA‑TATAGTAAG‑TATAAATAatat                                                                                                                                                                                                         <  1:609012/251‑1 (MQ=255)                                                  aaTCTGCATCTTAGCTTTTTT‑CTTTTTTCCTTTTGCATAAGAATCTTCATTT‑GTACCAATAAAGATAATAAATGCTAAAATGATTAATAAACAACTTGTACTTTTTAATTTCATATTAAAACTCTCTCCTCTTTTTATTCTATAATAAAACAAACAAATTATAATCTGTATATATTCT‑‑ACCCCCCCCCCC‑‑AGAGAATAAAAA‑TCAAAAATATTCTTTT‑TATAGTAAT‑TATAAATAATATATACTAATTTta                                                                                                                                                                                             >  1:271909/1‑251 (MQ=255)                                                   aTCTGCATCTTAGCTTTTTT‑CTTTTTTCCTTTTGCATAAGAATCTTCATTT‑GTACCAATAAAGATAATAAATGCTAAAATGATTAATAAACAACTTGTACTTTTTAATTTCATATTAAAACTCTCTCCTCTTTTTATTCTATAATAAAACAAACAAATTATAATCTGTATATATTCT‑‑ACCCCCCCCCCCC‑AGAGAATAAAAA‑TCAAATATATTCTTta‑t                                                                                                                                                                                                                              <  1:519930/219‑1 (MQ=255)                                                                                             aTCTTCATTT‑GTACCAATAAAGATAATAAATGCTAAAATGATTAATAAACAACTTGTACTTTTTAATTTCATATTAAAACTCTCTCCTCTTTTTATTCTATAATAAAACAAACAAATTATAATCTGTATATATTCT‑‑ACCCCCCCCCCCC‑AGAAAATAAAAA‑TCAAATATATTCTTTA‑TATAATAAG‑AATAAATAATAAATATTAAATTTAAA‑AAATTTTAAAAATTTGCTTAAAATAAAAAAAGAATTaaa                                                                                                                                                   >  1:195027/1‑250 (MQ=255)                                                                                                  cATTT‑GTACCAATAAAGATAATAAATGCTAAAATGATTAATAAACAACTTGTACTTTTTAATTTCATATTAAAACTCTCTCCTCTTTTTATTCTATAATAAAACAAACAAATTATAATCTGTATATATTCT‑‑ACCCCCCCCCCC‑‑AGAGAATAAAAA‑TCAAATATATTc                                                                                                                                                                                                                                    <  1:544492/167‑1 (MQ=255)                                                                                                    ttt‑GTACCAATAAAGATAATAAATGCTAAAATGATTAATAAACAACTTGTACTTTTTAATTTCATATTAAAACTCTCTCCTCTTTTTATTCTATAATAAAACAAACAAATTATAATCTGTATATATTCT‑‑ACCCCCCCCCCC‑‑AGAGAATAAAAA‑TCAAATATATTCTTTA‑TATAGTAAG‑TATAAATAATATATACTAAATTTAAT‑AAATTTTAAAAATTTGCTTAAAATAAAAAAAGGATTAACTCTTGttt                                                                                                                                           <  1:377222/251‑1 (MQ=255)                                                                                                            cAATAAAGATAATAAATGCTAAAATGATTAATAAACAACTTGTACTTTTTAATTTCATATTAAAACTCTCTCCTCTTTTTATTCTATAATAAAACAAACAAATTATAATCTGTATATATTCT‑‑ACCCCCCCCCCC‑‑AGAGAATAAAAA‑TCAAATATATTCTTTA‑TATAGTAAG‑TATAAATAATATATACTAAATTTAAT‑AAATTTTAAAAATTTGCTTAAAATAAAAAAAGGATTAACTCTTGTTTCTTGCaa                                                                                                                                    >  1:138468/1‑251 (MQ=255)                                                                                                                          aaTGCTAAAATGATTAATAAACAACTTGTACTTTTTAATTTCATATTAAAACTCTCTCCTCTTTTTATTCTATAATAAAACAAACAAATTATAATCTGTATATATTCT‑‑ACCCCCCCCCC‑‑‑AGAGAATAAAAA‑TCAAATATATTCTTTA‑TATAGTAAG‑TATAAATAATATATACTAAATTTAAT‑AAATTTTAAAAATTTGCTTAAAATAAAAAAAGGATTAACTCTTGTTTCTTGCAAAAGTCAATCCttatt                                                                                                                     <  1:592935/251‑1 (MQ=255)                                                                                                                                                                     tatTAAAACTCTCTCCTCTTTTTATTCTATAATAAAACAAACAAATTATAATCTGTATATATTCT‑‑ACCCCCCCCCCC‑‑AGAGAATAAAAA‑TCAAATATATTCTTTA‑TATAGTAAG‑TATAAATAATATATACTAAATTTAAT‑AAATTTTAAAAATTTGCTTAAAATAAAAAAAGGATTAACTCTTGTTTCTTGCAAAAGTCAATCCTTATTA‑GTAAATTAAATATTAAATTTTTTTAAAAATAGTGTGTAAAt                                                                          >  1:93110/1‑251 (MQ=255)                                                                                                                                                                                             ttCTATAATAAAACAAACAAAATATAAACTTTATATATTCT‑‑AACCCCCCCCCC‑‑AGAGAATAAAAA‑TCAAATATATTCTTTA‑TATAGTAAG‑TATAAATAATATATACTAAATTTAAT‑AAATTTTAAAAATTTGCTTAAAATAAAAAAAGGATTAACTCTTGTTTCTTGCAAAAGTCAATCCTTATTA‑GTAAATTAAATATTAAATTTTTTTAAAAATAGTGTGTAAATCCAACTCCAACAACACTGTCATaa                                                  <  2:271909/251‑1 (MQ=255)                                                                                                                                                                                                tataATAAAACAAACAAATTATAATCTTTATATATTCT‑‑ACCCCCCCCCCCC‑AGAGAATAAAAA‑TCAAATATATTCTTTA‑TATAGTAAG‑TATAAATAATATATACTAAATTTAAT‑AAATTTTAAAAATTTGCTTAAAATAAAAAAAGGATTAACTCTTGTTTCTTGCAAAAGTCAATCCTTATTA‑GTAAATTAAATATTAAATTTTTTTAAAAATAGTGTGTAAATCCAACTCCAACAACACTGTCATaaaa                                                <  1:330291/251‑1 (MQ=255)                                                                                                                                                                                                                aaTTATAATCTGTATATATTCT‑‑ACCCCCCCCCCCC‑AGAGAATAAAAA‑TCAAATATATTCTTTT‑TATAGTAAG‑AATAAATAATATATACTAAATTTAAT‑AAATTTTAAAAATTTGCTTAAAATAAAAAAAGGATTAACTTTTTTTTTTTGAAAAATTCAATCCTTATTA‑GAAAATTAAATATTAATTTTTTTTAAAAATAGTGTTTAAATCAAAATCCAAAAACAATGTCATAAAATTTACT‑TTTTTTAGtt                               >  1:535333/1‑251 (MQ=255)                                                                                                                                                                                                                         aagTATATATTCT‑‑ACCCCCCCCCCCC‑AGAGAATAAAAA‑TCAAATATATTCTTTA‑TATAGTAAG‑TATAAATAATATATACTAAATTTAAT‑AAATTTTAAAAATTTGCTTAAAATAAAAAAAGGATTAACTCTTGTTTCTTGCAAAAGTCAATCCTTATTA‑GTAAATTAAATATTAAATTTTTTTAAAAATAGTGTGTAAATCCAACTCCAACAACACTGTCATAAAATTTACT‑ATTTTTAGTTCCTCTGTAt                      <  1:388757/249‑1 (MQ=255)                                                                                                                                                                                                                           gTATATATTCT‑‑ACCCCCCCCCCCC‑AGAGAATAAAAA‑TAAAAAATATTTTTTT‑TATAGTAAG‑TATAAATAATATATACTAAATTTAAT‑AAATTTTAAAAATTTGTTTAAAATAAAAAAAGGATTAACTCTTGTTTCTTGAAAAAGTCAATCCTTTTTA‑GAAAATTAAAAATTAAATTTTTTTAAAAATAGTGTGAAAATCCAACTCCAAAAACACTGTCATAAAATTTATT‑ATTTTTATTTCCTCTgaat                      >  2:388757/1‑246 (MQ=255)                                                                                                                                                                                                                           gTATATATTCT‑‑ACCCCCCCCCCCC‑AGAGAAAAAAAA‑TCAAATATATTTTTTA‑TATAGTAAG‑TATAAAAAATATAAAATAAATTTAAA‑AAATTTTAAAAATTTTTTTAAAATAAAAAAAATATAAACTTTTGTTTTTTTCAAAAGTCAATCCTTTTTA‑GTAAATTAAATTTTAAATTTTTTTAAAAATAGTGTGTAAATCAAACTCCAAAAACACTGt                                                       >  1:585539/1‑217 (MQ=255)                                                                                                                                                                                                                           gTATATATTCT‑‑ACCCCCCCCCCCC‑AGAAAATAAAAA‑TAAAATATATTCTTTA‑TAAAGTAAG‑TATAAATAAAATATACTAAATTTAAT‑AAATTTTAAAAATTTGCTTAAAAAAAAAAAAGGATTAACTTTTGTTTCTTGCAAAAGTCAATCCTTATTA‑GTAAATTAAATATTAAATTTTTTTAAAAATAGTGGTTAAATCCAACTCCAAAAACACTGTCATAAAATTTACT‑ATTTTTATTTCctttttattt                    >  1:301466/1‑243 (MQ=255)                                                                                                                                                                                                                           gTATATATTCT‑‑ACCCCCCCCCCC‑‑AGAGATTAAAAA‑CCAAATATAT‑CTTTAATATA‑TAAGGAATAAATAAAATATACTAA‑TTTAATTAATTTTTAAAAATTGCCTTAAATTAAAAAAAGGATTACCTCTTTTTTTTTACAAAA‑TCAATTCTTTTTAAGAAAATAAAAAATTAA‑TTTTTTTTAAAATAATGGTTAAATTCAACTTCAAAAAAACCTTCATAAAATTTACTTAttttaatttcactgtttttaa                   >  2:733766/1‑234 (MQ=255)                                                                                                                                                                                                                           gTATATATTCT‑‑ACCCCCCCCCCC‑‑AGAGAATAAAAA‑TCAAATATATTCTTTA‑TATAGTAAG‑TATAAATAATATATACTAAATTTAAT‑AAATTTTAAAAATTTGCTTAAAATAAAAAAAGGATTAACTCTTGTTTCTTGCAAAAGTCAATCCTTATTA‑GTAAATTAAATATTAAATTTTTTTAAAAATAGTGTGTAAATCCAACTCCAACAacac                                                          <  1:23677/213‑1 (MQ=255)                                                                                                                                                                                                                           gTATATATTCT‑‑ACCCCCCCCCCC‑‑AGAGAATAAAAA‑GCAATTATATTATTTA‑TATAGTAAG‑TTTAAATAATATATACTAAATTTAAT‑AAATTTTAAAAATTTGCTTAAAATAAAAAAAGAATTAACTCTTGTTTCTTGCAAAGACCATTCTTTATTA‑GTAAATTAAATATTAATTTTTTTTAAAAATAGTGTGTAAATCAAACTCAAACAacac                                                          >  2:23677/1‑213 (MQ=255)                                                                                                                                                                                                                            tatataTTCT‑‑ACCCCCCCCCCCC‑AGAGAATAAAAA‑TCAAATATATTCTTTA‑TATAGTAAG‑TATAAATAATATATAATAAATTTAAT‑AAATTTTAAAAATTTGCTTAAAATAAAAAAAGGATTAACTCTTGTTTCTTGCAAAAGTCAATCCTTATTA‑GTAAATTAAATATTAAATTTTTTTAAAAATAGTGTGTAAATCCAACTCCAACAACACTGTCATAAAATTTACT‑ATTTTTAGTTCCTCTGTATTGa                   <  2:535333/251‑1 (MQ=255)                                                                                                                                                                                                                               atatTCT‑‑ACCCCCCCCCCC‑‑AGAGAATAAAAA‑TCAAATATATTCTTTA‑TATAGTAAG‑TATAAATAATATATACTAAATTTAAT‑AAATTTTAAAAATTTGCTTAAAATAAAAAAAGGATTAACTCTTGTTTCTTGCAAAAGTCAATCCTTATAA‑GAAAATTAAATATTAAATTTTTTTAAAAATAGTGTGTAAATCCAACTCAAACAACACTGTCATAAAATTTACT‑ATTTTTATTTCCTCTGAATTGAACAt               >  2:734233/1‑251 (MQ=255)                                                                                                                                                                                                                                 atTCT‑‑ACCCCCCCCCCCC‑AGAGAATAAAAA‑TAAAAAAAATTCTTTA‑TATAGTAAG‑TATAAATAATATATACTAAATTTAAT‑AAATTTTAAAAATTTGCTTAAAATAAAAAAAGGATTAACTCTTGTTTTTTGCAAAAGTCAATCCTTATTA‑GTAAATTAAATATTAAATTTTTTTAAAAATAGTGTGTAAATCCAACTCCACCCAAACTGTCATAAAATTTACT‑ATTTTTAGTTCCTCTGTATTGAACAt               >  2:466019/1‑250 (MQ=255)                                                                                                                                                                                                                                 atTCT‑‑ACCCCCCCCCCC‑‑AGAGAATAAAAA‑TCAAATATATTCTTTA‑TATAGTAAG‑TATAAATAATATATACTAAATTTAAT‑AAATTTTAAAAATTTGCTTAAAATAAAAAAAGGATTAACTCTTGTTTCTTGCAAAAGTCAATCCTTATTA‑GTAAATTAAATATTAAATTTTTTTAAAAATAGTGTGTAAATCCAACTCCAACAACACTGTCATaaaa                                                >  1:401431/1‑217 (MQ=255)                                                                                                                                                                                                                                 atTCT‑‑ACCCCCCCCCCC‑‑AGAGAATAAAAA‑TCAAATATATTCTTTA‑TATAGTAAG‑TATAAATAATATATACTAAATTTAAT‑AAATTTTAAAAATTTGCTTAAAATAAAAAAAGGATTAACTCTTGTTTCTTGCAAAAGTCAATCCTTATTA‑GTAAATTAAATATTAAATTTTTTTAAAAATAGTGTGTAAATCCAACTCCAACAACACTGTCATaaaa                                                <  2:401431/217‑1 (MQ=255)                                                                                                                                                                                                                                        aCCCCCCCCCCC‑‑AGAGAATAAAAA‑TCAAATATATTCTTTA‑TATAGTAAG‑TATAAATAATATATACTAAATTTAAT‑AAATTTTAAAAATTTGCTTAAAATAAAAAAAGGATTAACTCTTGTTTCTTGCAAAAGTCAATCCTTATTA‑GTAAATTAAATATTAAATTTTTTTAAAAATAGTGTGTAAATCCAACTCCAACAACACTGTCATAAAATTTACT‑ATTTTTAGTTCCTCTGTATTGAACATAAaataa        >  2:247453/1‑251 (MQ=255)                                                                                                                                                                                                                                              cccccc‑‑AGAGAATAAAAA‑TCAAATATATTCTTTA‑TATAGTAAG‑TATAAATAATATATACTAAATTTAAT‑AAATTTTAAAAATTTGCTTAAAATAAAAAAAGGATTAACTCTTGTTTCTTGCAAAAGTCAATCCTTATTA‑GTAAATTAAATATTAAATTTTTTTAAAAATAGTGTGTAAATCCAACTCCAACAACACTGTCATAAAATTTACT‑ATTTTTAGTTCCTCTGTATTGAACATCAAATAATAAatc  <  1:247453/251‑1 (MQ=255)                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                             ACTTTGGAGTGTCAGTAATTAAACCTACATCCCCATATTCTTCCATTTCAATCTGCATCTTAGCTTTTTT‑CTTTTTTCCTTTTGCATAAGAATCTTCATTT‑GTACCAATAAAGATAATAAATGCTAAAATGATTAATAAACAACTTGTACTTTTTAATTTCATATTAAAACTCTCTCCTCTTTTTATTCTATAATAAAACAAACAAATTATAATCTGTATATATTCT‑‑ACCCCCCCCCCC‑‑AGAGAATAAAAA‑TCAAATATATTCTTTA‑TATAGTAAG‑TATAAATAATATATACTAAATTTAAT‑AAATTTTAAAAATTTGCTTAAAATAAAAAAAGGATTAACTCTTGTTTCTTGCAAAAGTCAATCCTTATTA‑GTAAATTAAATATTAAATTTTTTTAAAAATAGTGTGTAAATCCAACTCCAACAACACTGTCATAAAATTTACT‑ATTTTTAGTTCCTCTGTATTGAACATCAAATAATAAATC  >  CP028101/1530162‑1530645

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑