| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP028101 | 865498 = | 158 (0.880) | 7 (0.040) | 4/422 | 3.6 | 4.1% | coding (128/1359 nt) | C7Y58_04280 | Trk system potassium transporter TrkA |
| ? | CP028101 | 865618 = | 178 (1.040) | coding (248/1359 nt) | C7Y58_04280 | Trk system potassium transporter TrkA | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATATTTATTTCATCTTTTTCAGTAACAGCTATAAAAACATCAGCTTTTGGGACTTCTGCTTCCATCTGTACATCATAACTCACACCACTACCAACGAACCCCATAATATCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP028101/865609‑865498‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataatatcatCAGTTATAGCTAAAAAATTAGGGGCAAAGTACACTATTGCCAGAGTTAGAAGTACAGATTATTCATCTCAACTTAACTTTATGACAGAATCTTTAGGGATAGATTTAGTAATAAATCCAGAACTTGAAGCAGCAAAAGATATAAAACAAAATAT > CP028101/865618‑865771 ATATTTATTTCATCTTTTTCAGTAACAGCTATAAAAACATCAGCTTTTGGGACTTCTGCTTCCATCTGTACATCATAACTCACACCACTACCAACGAACCCCATAATATCATCAGTTATAGCTAAAAAATTAGGGGCAAAGTACACTATTGCCAGAGTTAGAAGTACAGATTATTCATCTCAACTTAACTTTATGACAGAATCTTTAGGGATAGATTTAGTAATAAATCCATAACTTGAAGCAGCAAAAGA > 2:842721/1‑251ATATTTATTTCATCTTTTTCAGTAACAGCTATAAAAACATCAGCTTTTGGGACTTCTGCTTCCATCTGTACATCATAACTCACACCACTACCAACGAACCCCATAATATCATCAGTTATAGCTAAAAAATTAGGGGCAAAGTACACTATTGCCAGAGTTAGAAGTACAGATTATTCATCTCAACTTAACTTTATGACAGAATCTTTAGGGATAGATTTAGTAATAAATCCAGAACTTGAAGC < 1:876512/242‑1ATATTTATTTCATCTTTTTCAGTAACAGCTATAAAAACATCAGCTTTTGGGACTTCTGCTTCCATCTGTACATCATAACTCACACCACTACCAACGAACCCCATAATATCATCAGTTATAGCTAAAAAATTAGGGGCAAAGTACACTATTGCCAGAGTTAGAAGTACAGATTATTCATCTCAACTTAACTTTATGACAGAATCTTTAGGGATAGATTTAGTAATAAATCCAGAACTTGAAGC > 2:876512/1‑242ATATTGATTTCATCTTTTTCAGTAACAGCTATAAAAACATCAGCTTTTGGGACTTCTTCTTCCATCTGTACATCATAACTCACACCACTACCAACGAACCCCATAATATCATCAGTTATAGCTAAAAAATTAGGGGCTAAGTACACTATTGCCAGAGTTAGAAGTACAGAATATTCATCTCAACTTAACTTTATGAAAGAATCTTTAGGGATAGATTTAGTAATAAATCCAGAACTTGAAGCAGCAAAAGA > 2:624338/1‑251 TTTTCAGTAACAGCTATAAAGACATCAGCTTTCGGGACTTCTGCTTCCATCTGTACATCATAACTCACACCACTACCAACGAACCCCATAATATCATCAGTTATAGCTAAAAAATTAGGGGCAAAGTACACTATTGCCAGAGTTAGAAGTACAGATTATTCATCTCAACTTAACTTTATGACAGAATCTTTAGGGATAGATTTAGTAATAAATCCAGAACTTGAAGCAGCAAAAGATATAAAACAAAATAT < 1:624338/251‑1 GCTATAAAAACATCAGCTTTTGGGACTTCTGCTTCCATCTGTACATCATAACTCACACCACTACCAACGAACCCCATAATATCATCAGTTATAGCTAAAAAATTAGGGGCAAAGTACACTATTGCCAGAGTTAGAAGTACAGATTATTCATCTCAACTTAACTTTATGACAGAATCTTTAGGGATAGATTTAGTAATAAATCCAGAACTTGAAGCAGCAAAAGATATAAAACAAAATAT < 1:483684/239‑1 GCTATAAAAACATCAGCTTTTGGGACTTCTGCTTCCATCTGTACATCATAACTCACACCACTACCAACGAACCCCATAATATCATCAGTTATAGCTAAAAAATTAGGGGCAAAGTACACTATTGCCAGAGTTAGAAGTACAGATTATTCATCTCAACTTAACTTTATGACAGAATCTTTAGGGATAGATTTAGTAATAAATCCAGAACTTGAAGCAGCAAAAGATATAAAACAAAATAT > 2:483684/1‑239 ATATTTATTTCATCTTTTTCAGTAACAGCTATAAAAACATCAGCTTTTGGGACTTCTGCTTCCATCTGTACATCATAACTCACACCACTACCAACGAACCCCATAATATCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP028101/865609‑865498‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataatatcatCAGTTATAGCTAAAAAATTAGGGGCAAAGTACACTATTGCCAGAGTTAGAAGTACAGATTATTCATCTCAACTTAACTTTATGACAGAATCTTTAGGGATAGATTTAGTAATAAATCCAGAACTTGAAGCAGCAAAAGATATAAAACAAAATAT > CP028101/865618‑865771 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |