mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 873 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 621,890 | 0 | T | G | 79.7% | 198.1 / 267.0 | 569 | S999A (TCA→GCA) | SAUSA300_RS02925 | MSCRAMM family adhesin SdrE |
| * | NC_007793 | 1,101,337 | 0 | T | A | 79.4% | 793.5 / 182.4 | 415 | S74S (TCA→TCT) | SAUSA300_RS05410 | divalent metal cation transporter |
| * | NC_007793 | 621,994 | 0 | G | A | 78.5% | 27.2 / 22.9 | 94 | S1033S (TCG→TCA) | SAUSA300_RS02925 | MSCRAMM family adhesin SdrE |
| * | NC_007793 | 2,411,453 | 0 | T | G | 78.3% | 39.6 / 7.1 | 23 | Y37D (TAT→GAT) | SAUSA300_RS12395 | hypothetical protein |
| * | NC_007793 | 1,101,340 | 0 | A | G | 78.2% | 597.7 / 165.4 | 409 | I73I (ATT→ATC) | SAUSA300_RS05410 | divalent metal cation transporter |
| * | NC_007793 | 2,119,924 | 0 | A | C | 78.1% | 14.9 / 8.7 | 32 | N71K (AAT→AAG) | SAUSA300_RS10760 | hypothetical protein |
| * | NC_007793 | 2,411,452 | 0 | T | C | 77.3% | 25.9 / 4.4 | 22 | S36S (TCT→TCC) | SAUSA300_RS12395 | hypothetical protein |
| * | NC_007793 | 128,677 | 0 | A | G | 77.1% | 1661.1 / inf | 3221 | N339N (AAT→AAC) | SAUSA300_RS00585 | peptidoglycan‑binding protein LysM |
| * | NC_007793 | 2,249,009 | 0 | A | T | 76.9% | 15.8 / 2.1 | 13 | intergenic (‑396/+3) | SAUSA300_RS11480/SAUSA300_RS11485 | hypothetical protein/ATP‑grasp domain‑containing protein |
| * | NC_007793 | 2,623,498 | 0 | T | A | 76.8% | 188.7 / 50.2 | 113 | intergenic (‑4/+1418) | SAUSA300_RS13500/SAUSA300_RS13505 | hypothetical protein/hypothetical protein |
| * | NC_007793 | 616,684 | 0 | T | A | 76.4% | 35.5 / 53.6 | 106 | N776K (AAT→AAA) | SAUSA300_RS02920 | serine‑aspartate repeat‑containing protein D |
| * | NC_007793 | 616,686 | 0 | G | A | 76.4% | 44.6 / 42.6 | 106 | G777D (GGT→GAT) | SAUSA300_RS02920 | serine‑aspartate repeat‑containing protein D |
| * | NC_007793 | 621,800 | 0 | T | G | 76.4% | 8.3 / 35.6 | 73 | S969A (TCA→GCA) | SAUSA300_RS02925 | MSCRAMM family adhesin SdrE |
| * | NC_007793 | 618,019 | 0 | C | T | 76.3% | 76.1 / 44.1 | 131 | D1221D (GAC→GAT) | SAUSA300_RS02920 | serine‑aspartate repeat‑containing protein D |
| * | NC_007793 | 613,630 | 0 | T | C | 76.1% | 22.5 / 13.3 | 46 | S828S (AGT→AGC) | SAUSA300_RS02915 | serine‑aspartate repeat‑containing protein C |
| * | NC_007793 | 616,693 | 0 | T | C | 75.7% | 40.2 / 46.6 | 107 | D779D (GAT→GAC) | SAUSA300_RS02920 | serine‑aspartate repeat‑containing protein D |
| * | NC_007793 | 616,697 | 0 | A | T | 75.7% | 36.3 / 53.7 | 107 | M781L (ATG→TTG) | SAUSA300_RS02920 | serine‑aspartate repeat‑containing protein D |
| * | NC_007793 | 616,698 | 0 | T | G | 75.7% | 29.9 / 60.2 | 107 | M781R (ATG→AGG) | SAUSA300_RS02920 | serine‑aspartate repeat‑containing protein D |
| * | NC_007793 | 613,061 | 0 | C | A | 75.4% | ‑1.5 / 30.6 | 57 | Q639K (CAA→AAA) | SAUSA300_RS02915 | serine‑aspartate repeat‑containing protein C |
| * | NC_007793 | 613,456 | 0 | G | A | 75.3% | 119.1 / 51.4 | 163 | S770S (TCG→TCA) | SAUSA300_RS02915 | serine‑aspartate repeat‑containing protein C |