| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 2,249,009 | 0 | A | T | 76.9% | 15.8 / 2.1 | 13 | intergenic (‑396/+3) | SAUSA300_RS11480/SAUSA300_RS11485 | hypothetical protein/ATP‑grasp domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base A (0/3); new base T (0/10); total (0/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.55e-01 | |||||||||||
TTGACTAGAATCGAAAAAAGCTTGTTACAAACGCATATTCAGTCAACTACTGGCAACACAACATTGTAGCGCCTTATGTTCCGAACTCTAATAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGCCAAACCTTGATTTA > NC_007793/2248925‑2249105 | ttGACTAGAATCGAAAAAAGCTTGTTACAAACGCATATTCAGTCAACTACTGGCAACACAACATTGTAGCGCCTTATGTTCCGAACTCTAATAGTGTTCa < 1:1585876/100‑1 (MQ=255) caacaTTGTAGCGCCTTATGTTCCGAACTCTAATAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGcc < 1:4633427/100‑1 (MQ=255) acgtgtgctcttCCGATCTCTAATGGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGcc < 1:6172541/90‑1 (MQ=255) acgtgtgctcttCCGATCTCTAATAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGcc < 1:1855267/90‑1 (MQ=255) acgtgtgctcttCCGATCTCT‑ATAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGCCa < 1:325630/90‑1 (MQ=255) cgtgtgctcttCCGATCTCTAGTAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGCCa < 1:3951700/91‑1 (MQ=255) cgtgtgctcttCCGATCTCC‑ATAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTTCTGTTTCTTTTGAATCACCATGCCAAATACAGCCaa < 1:6360781/91‑1 (MQ=255) ctcttCCGATCTTT‑ATAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGCCAAACCTTg < 1:6629470/97‑1 (MQ=255) ctcttCCGATCTCTAAAAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGCCAAACCtt < 1:236476/97‑1 (MQ=255) ccgatctgAACCCTAATAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGCCAAACCtt < 1:931125/93‑1 (MQ=255) tcttCCGATCTCTAATAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCAATCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGCCAAACCtgt < 1:3829429/98‑3 (MQ=255) tcttCCGATCTCAAATAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGCCAAACCTTg < 1:5529428/98‑1 (MQ=255) cGATCTCTAATAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGCCAAACCTTGAtttc < 1:2524548/100‑2 (MQ=255) | TTGACTAGAATCGAAAAAAGCTTGTTACAAACGCATATTCAGTCAACTACTGGCAACACAACATTGTAGCGCCTTATGTTCCGAACTCTAATAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGCCAAACCTTGATTTA > NC_007793/2248925‑2249105 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |