Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_007793621,8000TG76.4% 8.3 / 35.6 73S969A (TCA→GCA) SAUSA300_RS02925MSCRAMM family adhesin SdrE
Reads supporting (aligned to +/- strand):  ref base T (17/0);  new base G (54/1);  total (72/1)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.66e-01

Only 100 of 203 total aligned reads displayed.

AGACAGCGATTCAGACTCAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCG  >  NC_007793/621718‑621899
                                                                                  |                                                                                                   
                 cAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCATACAGCGACTCAGAGTCAGATAGCGACTCAGa                                                                   >  1:4612507/1‑100 (MQ=255)
                       gacccccggacagcgattcagacgcagatagcgattctgatgcgGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGACTCTGATGCGGa                                                             >  1:1236663/9‑100 (MQ=2)
                          atgcggacagcgattcagacgcagatagcgattctgatgcgGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGagag                                                          >  1:3374747/6‑100 (MQ=2)
                            gcagacagcgactcagacgcagatagcgattcagatgCGGACAGCAACTCAGACACAGACAGCGACTCAGCGGCAGATAGCGCATCTGAAGCGGACAGCg                                                        >  1:1395709/2‑100 (MQ=2)
                             cagacagcgactcagactcggatagcgattcagattCAGATAGCGATTCGGATTCAGACAGTGATTCAGATTCAGACAGAGACTCAGA‑TCGGAcgagcac                                                      >  1:3715299/1‑94 (MQ=14)
                             cagacagcgactcagactcagacagcgactcagactCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGa                                                       >  1:4024689/1‑100 (MQ=40)
                             cagacagcgactcagactcagacagcgactcagactCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGATTCGAACAGcag                                                       >  1:5537518/1‑98 (MQ=255)
                                         cagacgcagatagcgtctcagacgcagatagCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGa                                           >  1:3700804/1‑100 (MQ=2)
                                             ttatcccagcgattcagacgcagatagCGATTCTGATGCGCACAGCGATTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATTCAGACGCAGATAGc                                       >  1:1004773/7‑100 (MQ=2)
                                             ctcagacagcgactcagacgcagatagCGATTCAGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGAAGCAGATAGc                                       >  1:6634854/1‑100 (MQ=2)
                                               cagacagcgactcagactcagacagTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGa                                     >  1:4725866/1‑100 (MQ=255)
                                                agccagcgattcagattcagatagCGATTCAGATTCAGACAGAGACTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGAC‑CAGAtcggaaga                                   >  1:1439992/4‑93 (MQ=18)
                                                acagggcgactcagacgcagatagCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGat                                    >  1:2740358/6‑99 (MQ=2)
                                                    cgcgactcagacgcagatagCGATTCAGATGCGGACAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATtcag                                >  1:3809096/2‑100 (MQ=11)
                                                      tgactcagacgcagatagCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATtctgat                              >  1:1993531/2‑100 (MQ=2)
                                                        cctcagacgcagatagCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGCTAGCGATtctgatgc                            >  1:3801882/2‑98 (MQ=2)
                                                           cggacgcagatagCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATtctgatgcaga                         >  1:4061804/3‑100 (MQ=2)
                                                           cagatgcggacagcgattcagacgcagacagcgattcagacgcaGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGACtcagattcaga                         >  1:3098806/9‑100 (MQ=2)
                                                           cagacgcagatagCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATtctgatgcaga                         >  1:6085354/1‑100 (MQ=2)
                                                           cagacgcagatagCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATtctgatgcaga                         >  1:1556693/1‑100 (MQ=2)
                                                           cagacgcagatagCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATtctgatgcaga                         >  1:2595148/1‑100 (MQ=2)
                                                           cagacgcagatagCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATtctgatgcaga                         >  1:3546540/1‑100 (MQ=2)
                                                            ctatgcggacagcgattcagacgcagacagcgattcagacgcaGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGCttcagattcagac                        >  1:6427093/8‑99 (MQ=2)
                                                            cgacgcagatagCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATTCAGACGCAGATAGCGATtctgatgcggac                        >  1:2789454/2‑94 (MQ=0)
                                                            agacgcagatagCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATtctgatgcagac                        >  1:4291587/1‑99 (MQ=2)
                                                             gacgcagatagCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATTCAGACGCAGATAGCGATtctgatgcggaca                       >  1:4040136/1‑93 (MQ=0)
                                                              acgcagatagCGATTCTGATGCAGACAGCGACTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATTCAGACGCAGACAGCGATTCAGACGCAGATAg                      >  1:290589/4‑100 (MQ=2)
                                                              acgcagatagCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCAGACAg                      >  1:6494264/4‑100 (MQ=2)
                                                                  ctatagcgattctgatgcaGACAGCGACTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATTCAGACGCAGACAGCGATTCAGACGCAGATAGCGAt                  >  1:3153787/8‑100 (MQ=2)
                                                                    ctggcgactcagattcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtc                >  1:2209503/9‑100 (MQ=11)
                                                                     tagcgattcagatgcgGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGACtca               >  1:5074594/5‑100 (MQ=1)
                                                                     cagCGATTCTGATGCAGACAGCGACTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATTCAGACGCAGACAGCGATTCAGACGCAGATAGCGATtct               >  1:1705439/1‑99 (MQ=11)
                                                                     aagcgactcagattcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGGTTCAGATAGCGATtct               >  1:5554264/8‑99 (MQ=1)
                                                                      agcgattcagattcaGACAGCGACTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATtcag              >  1:4899970/4‑100 (MQ=11)
                                                                      agcgattcagatgcgGACAGCGATTCCGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctg              >  1:1790769/4‑98 (MQ=0)
                                                                      agcgattcagatgcgGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctg              >  1:3839523/4‑98 (MQ=1)
                                                                      agcgattcagatgcgGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctg              >  1:5314054/4‑98 (MQ=1)
                                                                      agcgattcagatgcgGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctg              >  1:2064669/4‑98 (MQ=1)
                                                                       cagattcagatgcaGACAGCGACTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATTCAGACGCAGACAGCGATTCAGACGCAGATAGCGATtctga             >  1:2298134/3‑100 (MQ=11)
                                                                       atGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctga             >  1:3638704/2‑100 (MQ=11)
                                                                         caccccgattcagaCAGCGACTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATtcagacg           >  1:3424424/7‑99 (MQ=11)
                                                                         aattcagatgcggACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctgatg           >  1:1906093/2‑98 (MQ=11)
                                                                          attctgatgcggACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGACtctgatgc          >  1:1148608/1‑97 (MQ=2)
                                                                          actcagattcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctgatgc          >  1:487167/3‑97 (MQ=11)
                                                                          acccagattcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctgatgc          >  1:957678/4‑97 (MQ=11)
                                                                           ctcagattcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctgatgcg         >  1:5176113/2‑96 (MQ=11)
                                                                           ctcagatgcggaCAGCGATTCAGATGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctgatacg         >  1:2628801/2‑96 (MQ=11)
                                                                           cccagattcagaCAGCGACTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATtcagacgca         >  1:6206979/3‑100 (MQ=11)
                                                                            gcagattcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctgatgcgg        >  1:6385109/2‑95 (MQ=11)
                                                                            gcagattcagaCAGCGACTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATTCCGACGCAGATAGCGATTCTGATGCGGTCAGCGCGtcagacgcag        >  1:584888/2‑100 (MQ=2)
                                                                            ccagattcagaCAGCGACTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATtcagacgcag        >  1:4215209/2‑100 (MQ=11)
                                                                             cagattcagtCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATACAGACGCAGATAGCGATTCCGATTCAGATAGCGATtctgttgcgga       >  1:3522333/1‑91 (MQ=2)
                                                                             cagattcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctgatgtgga       >  1:3058496/1‑94 (MQ=11)
                                                                             cagattcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctgatgcgga       >  1:77835/1‑94 (MQ=11)
                                                                             cagattcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctgatgcgga       >  1:3813640/1‑94 (MQ=11)
                                                                             cagattcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctgatgcgga       >  1:5659135/1‑94 (MQ=11)
                                                                             cagattcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctgatgcgga       >  1:5049117/1‑94 (MQ=11)
                                                                             cagattcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctgatgcgga       >  1:4840381/1‑94 (MQ=11)
                                                                             cagattcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctgatgcgga       >  1:491704/1‑94 (MQ=11)
                                                                             cagattcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctgatgcgga       >  1:5730130/1‑94 (MQ=11)
                                                                             cagattcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctgatgcgga       >  1:881015/1‑94 (MQ=11)
                                                                             cagattcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctgatgcgga       >  1:4996549/1‑94 (MQ=11)
                                                                             cagattcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctgatgcgga       >  1:2087933/1‑94 (MQ=11)
                                                                             cagattcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctgatgcgga       >  1:4514100/1‑94 (MQ=11)
                                                                             cagattcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctgatgcgga       >  1:4111001/1‑94 (MQ=11)
                                                                             cagattcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctgatgcgga       >  1:2470961/1‑94 (MQ=11)
                                                                             cagattcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctgatgcgga       >  1:2684762/1‑94 (MQ=11)
                                                                             cagattcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctgatgcgga       >  1:3619956/1‑94 (MQ=11)
                                                                             cagattcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctgatgcgga       >  1:1174340/1‑94 (MQ=11)
                                                                             cagattcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctgatgcgga       >  1:3118373/1‑94 (MQ=11)
                                                                             cagattcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctgatgcgga       >  1:1938930/1‑94 (MQ=11)
                                                                             cagattcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctgatgcgaa       >  1:6394095/1‑94 (MQ=11)
                                                                             cagattcagaCAGCGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATtcagactcaga       >  1:6125688/1‑100 (MQ=255)
                                                                             cagattcagaCAGCGACTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATtcagacgcaga       >  1:3398899/1‑100 (MQ=11)
                                                                             cagattcagaCAGCGACTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATtcagacgcaga       >  1:3462201/1‑100 (MQ=11)
                                                                             cagattcagaCAGCGACTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATtcagacgcaga       >  1:1961586/1‑100 (MQ=11)
                                                                             cagattcagaCAGCGACTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATtcagacgcaga       >  1:3225764/1‑100 (MQ=11)
                                                                             cagattcagaCAGCGACTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATtcagacgcaga       >  1:3886851/1‑100 (MQ=11)
                                                                             cagatgcggaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATtcagacgcaga       >  1:1046385/1‑100 (MQ=2)
                                                                              tgatgcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctgatgcggac      >  1:1636831/2‑93 (MQ=2)
                                                                              agattcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctgatgcggac      >  1:838475/1‑93 (MQ=11)
                                                                              agattcagaCAGCGACTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATtcagacgcagat      >  1:1141375/1‑99 (MQ=11)
                                                                               gattcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctgatgcggaca     >  1:5884139/1‑92 (MQ=11)
                                                                               gattcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctgatgcggaca     >  1:3743054/1‑92 (MQ=11)
                                                                               gatgcagaCAGCGACTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATtcagacgcagata     >  1:6530459/1‑98 (MQ=2)
                                                                                tctcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAg    >  1:6289053/3‑100 (MQ=2)
                                                                                 ttcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGc   >  1:6067981/1‑100 (MQ=11)
                                                                                 ttcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGc   >  1:4175272/1‑100 (MQ=11)
                                                                                 ctcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGCTTCAGATTCAGATAGCGATTCTGATGCGGACAGc   >  1:2517801/2‑100 (MQ=2)
                                                                                 ctcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGc   >  1:348546/2‑100 (MQ=11)
                                                                                 ctcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGc   >  1:722342/2‑100 (MQ=11)
                                                                                 ctcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGc   >  1:4397999/2‑100 (MQ=11)
                                                                                 ctcagaCAGCGATTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGAAGCGGACAGc   >  1:5146529/2‑100 (MQ=11)
                                                                                 atcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGc   >  1:1344580/2‑100 (MQ=11)
                                                                                  tcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCg  >  1:1533908/1‑100 (MQ=11)
                                                                                  tcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCg  >  1:6558414/1‑100 (MQ=11)
                                                                                  tcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCg  >  1:5018285/1‑100 (MQ=11)
                                                                                  tcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCg  >  1:3325475/1‑100 (MQ=11)
                                                                                  tcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCg  >  1:5415951/1‑100 (MQ=11)
                                                                                  tcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATGCAGACAGCGATTCTGACGCGGACAGCg  >  1:6580672/1‑100 (MQ=2)
                                                                                  |                                                                                                   
AGACAGCGATTCAGACTCAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCG  >  NC_007793/621718‑621899

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑