mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.38.1
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 592 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Xen14_143 | 155 | 0 | G | A | 79.5% | 1134.7 / 250.2 | 668 | A51V (GCG→GTG) | Xen14_04759 | hypothetical protein |
| * | Xen14_126 | 1,900 | 0 | A | T | 78.5% | 2641.8 / inf | 1356 | R38R (CGA→CGT) | Xen14_04726 | hypothetical protein |
| * | Xen14_126 | 2,062 | 0 | T | C | 78.5% | 1286.6 / 308.0 | 778 | A92A (GCT→GCC) | Xen14_04726 | hypothetical protein |
| * | Xen14_38 | 48,337 | 0 | A | G | 78.3% | 719.2 / 202.4 | 509 | Y167H (TAC→CAC) | Xen14_03355 | IS21 family transposase IS100kyp |
| * | Xen14_28 | 78 | 0 | T | C | 78.3% | 180.7 / 41.8 | 115 | intergenic (–/‑507) | –/gadC | –/putative glutamate/gamma‑aminobutyrate antiporter |
| * | Xen14_126 | 2,059 | 0 | T | G | 78.1% | 1680.5 / inf | 779 | A91A (GCT→GCG) | Xen14_04726 | hypothetical protein |
| * | Xen14_126 | 2,063 | 0 | C | A | 77.8% | 1560.5 / inf | 782 | L93I (CTT→ATT) | Xen14_04726 | hypothetical protein |
| * | Xen14_126 | 2,066 | 0 | A | G | 77.5% | 1281.9 / inf | 787 | T94A (ACT→GCT) | Xen14_04726 | hypothetical protein |
| * | Xen14_126 | 2,068 | 0 | T | G | 77.5% | 1675.6 / inf | 787 | T94T (ACT→ACG) | Xen14_04726 | hypothetical protein |
| * | Xen14_17 | 79,627 | 0 | T | C | 77.3% | 886.4 / inf | 982 | S215G (AGC→GGC) ‡ | Xen14_02064 | IS4 family transposase ISEc13 |
| * | Xen14_17 | 79,624 | 0 | T | G | 77.2% | 844.3 / inf | 982 | S216R (AGC→CGC) | Xen14_02064 | IS4 family transposase ISEc13 |
| * | Xen14_17 | 79,625 | 0 | G | A | 77.1% | 874.3 / inf | 982 | S215S (AGC→AGT) ‡ | Xen14_02064 | IS4 family transposase ISEc13 |
| * | Xen14_17 | 79,628 | 0 | T | G | 77.0% | 824.2 / inf | 982 | T214T (ACA→ACC) | Xen14_02064 | IS4 family transposase ISEc13 |
| * | Xen14_126 | 1,855 | 0 | T | G | 76.2% | 1826.9 / inf | 1234 | V23V (GTT→GTG) | Xen14_04726 | hypothetical protein |
| * | Xen14_28 | 132 | 0 | G | C | 74.9% | 400.2 / 156.0 | 212 | intergenic (–/‑453) | –/gadC | –/putative glutamate/gamma‑aminobutyrate antiporter |
| * | Xen14_17 | 79,607 | 0 | A | G | 74.4% | 542.7 / inf | 780 | V221V (GTT→GTC) | Xen14_02064 | IS4 family transposase ISEc13 |
| * | Xen14_191 | 160 | 0 | T | C | 74.4% | 292.6 / 135.5 | 281 | intergenic (–/–) | –/– | –/– |
| * | Xen14_126 | 1,987 | 0 | A | G | 73.8% | 1547.4 / inf | 1100 | T67T (ACA→ACG) | Xen14_04726 | hypothetical protein |
| * | Xen14_70 | 14,259 | 0 | C | G | 73.7% | 154.2 / 135.5 | 176 | intergenic (+838/–) | Xen14_04299/– | hypothetical protein/– |
| * | Xen14_143 | 498 | 0 | C | T | 73.6% | 313.7 / 199.4 | 399 | intergenic (‑192/–) | Xen14_04759/– | hypothetical protein/– |
| Marginal new junction evidence (lowest skew 10 of 153 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Xen14_168 | = 298 | 1569 (1.140) | 92 (0.130) | 55/296 | 0.0 | 5.5% | coding (221/459 nt) | Xen14_04774 | IS200/IS605 family transposase IS200C |
| ? | Xen14_94 | 7510 = | NA (NA) | intergenic (‑130/–) | Xen14_04561/– | hypothetical protein/– | |||||
| * | ? | Xen14_168 | 296 = | 1549 (1.120) | 91 (0.130) | 48/296 | 0.1 | 5.5% | coding (223/459 nt) | Xen14_04774 | IS200/IS605 family transposase IS200C |
| ? | Xen14_190 | 374 = | NA (NA) | intergenic (–/–) | –/– | –/– | |||||
| * | ? | Xen14_180 | = 75 | NA (NA) | 88 (0.280) | 44/296 | 0.3 | 10.6% | intergenic (–/–) | –/– | –/– |
| ? | Xen14_202 | = 280 | 742 (1.350) | intergenic (–/–) | –/– | –/– | |||||
| * | ? | Xen14_105 | = 4988 | 276 (1.840) | 60 (0.510) | 35/296 | 0.7 | 17.9% | intergenic (+229/–) | Xen14_04638/– | IS3 family transposase ISCfr6/– |
| ? | Xen14_152 | 859 = | NA (NA) | intergenic (–/–) | –/– | –/– | |||||
| * | ? | Xen14_166 | = 330 | 1368 (0.580) | 109 (0.090) | 48/296 | 1.0 | 12.9% | intergenic (–/–) | –/– | –/– |
| ? | Xen14_38 | 48182 = | 103 (0.940) | intergenic (+768/+108) | Xen14_03354/Xen14_03355 | hypothetical protein/IS21 family transposase IS100kyp | |||||
| * | ? | Xen14_143 | = 812 | 1111 (1.490) | 49 (0.120) | 24/292 | 1.2 | 4.3% | intergenic (‑506/–) | Xen14_04759/– | hypothetical protein/– |
| ? | Xen14_180 | = 73 | NA (NA) | intergenic (–/–) | –/– | –/– | |||||
| * | ? | Xen14_12 | 25 = | 991 (12.740) | 43 (0.040) | 29/280 | 1.5 | 8.4% | intergenic (–/+303) | –/Xen14_01540 | –/hypothetical protein |
| ? | Xen14_166 | = 677 | 0 (0.000) | intergenic (–/–) | –/– | –/– | |||||
| * | ? | Xen14_138 | 1232 = | 108 (0.850) | 77 (0.180) +GT |
45/292 | 1.7 | 11.5% | intergenic (‑5/–) | scrY_2/– | Sucrose porin/– |
| ? | Xen14_143 | 808 = | 1089 (1.460) | intergenic (‑502/–) | Xen14_04759/– | hypothetical protein/– | |||||
| * | ? | Xen14_166 | = 330 | 1368 (0.580) | 20 (0.020) | 15/296 | 2.0 | 1.4% | intergenic (–/–) | –/– | –/– |
| ? | Xen14_180 | = 75 | NA (NA) | intergenic (–/–) | –/– | –/– | |||||
| * | ? | Xen14_138 | 1232 = | 108 (0.850) | 82 (0.240) | 42/296 | 2.2 | 16.2% | intergenic (‑5/–) | scrY_2/– | Sucrose porin/– |
| ? | Xen14_202 | 276 = | 741 (1.350) | intergenic (–/–) | –/– | –/– | |||||