New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? Xen14_168 = 2981569 (1.140)92 (0.130) 55/296 0.0 5.5% coding (221/459 nt) Xen14_04774 IS200/IS605 family transposase IS200C
?Xen14_94 7510 = NA (NA)intergenic (‑130/–) Xen14_04561/– hypothetical protein/–
Rejected: Frequency below/above cutoff threshold.

GTGGGATGTACGTTCATTACCTGCTCAAGAATTTGAGCATTCTCACTTCCCTTTGTTTGCATATCGGGAGAATCAAGGAATGATTGGTTGCCATCATCGTTGGGATCAAACTCACGAATACAGCGTTTCTCAATAGTAGAAAGAACTGAAGTGGTCAACAAAAACTGGCCACCGCGTTAGAGTTTTTCCAGTATCGATTTTCCGATTCGTTTGGGGGTAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  Xen14_94/7364‑7584
                                                                                                                                                  |                                                                                         
gtgGGATGTACGTTCATTACCTGCTCAAGAATTTGAGCATTCTCACTTCCCTTTGTTTGCATATCGGGAGAATCAAGGAATGATTGGTTGCCATCATCGTTGGGATCAAACTCACGAATACAGCGTTTCTCAATAGTAGAAAGAACTGaa                                                                                        <  1:3431073/150‑1 (MQ=255)
 tgGGATGTACGTTCATTACCTGCTCAAGAATTTGAGCATTCTCACTTCCCTTTGTTTGCATATTGGGAGAATCAAGGAATGATTGGTTGCCATCATCGTTGGGATCAAACTCACGAATACAGCGTTTCTCAATAGTAGAAAGAACTGAAg                                                                                       <  1:849904/150‑1 (MQ=255)
  gggATGTACGTTCATTACCTGCTCAAGAATTTGAGCATTCTCACTTCCCTTTGTTTGCATATCGGGAGAATCAAGGAATGATTGGTTGCCATCATCGTTGGGATCAAACTCACGAATACAGCGTTTCTCAATAGTAGAAAGAACTGAAGt                                                                                      >  1:1629035/1‑150 (MQ=255)
  gggATGTACGTTCATTACCTGCTCAAGAATTTGAGCATTCTCACTTCCCTTTGTTTGCATATCGGGAGAATCAAGGAATGATTGGTTGCCATCATCGTTGGGATCAAACTCACGAATACAGCGTTTCTCAATAGTAGAAAGAACTGAAGt                                                                                      >  1:1629037/1‑150 (MQ=255)
  gggATGTAAGTTCATTACCTGCTCAAGAATTTGGGCATTCTCACTTCCCTTTGTTTGCATATCGGGAGAATCAAGGAATGATTGGTTGCCATCATCGTTGGGATCAAACTCACGAATACAGCGTTTCTCCATAGTAGAAAGAACTGAAGt                                                                                      >  1:30765/1‑150 (MQ=255)
        tACGTTCATTACCTGCTCAAGAATTTGAGCATTCTCACTTCCCTTTGTCTGCATATCGGGAGAATCAAGGAATGATTGGTTGCCATCATCGTTGGGATCAAACTCACGAATACAGCGTTTCTCAATAGTAGAAAGAACTGAAGTGGTcaa                                                                                >  1:2947621/1‑150 (MQ=255)
                 tACCTGCTCAAGAATTTGAGCATTCTCACTTCCCTTTGTTTGCATATCGGGAGAATCAAGGAATGATTGGTTGCCATCATCGTTGGGATCAAACTCACGAATACAGCGTTTCTCAATAGTAGAAAGAACTGAAGTGGTCAACAAAAACTg                                                                       <  1:2638379/150‑1 (MQ=255)
                  aCCTGCTCAAGAATTTGAGCATTCTCACTTCCCTTTGTTTGCATATCGGGAGAATCAAGGAATGATTGGTTGCCATTATCGTTGGGATCAAACTCACGAATACAGCGTTTCTCAATAGTAGAAAGAACTGAAGTGGTCAACAAAAACTgg                                                                      <  1:46116/150‑1 (MQ=255)
                   ccTGCTCAAGAATTTGAGCATTCTCACTTCCCTTTGTTTGCATATCGGGAGAATCAAGGAATGATTGGTTGCCATCATCGTTGGGGTCAAACTCACGAATACAGCGTTTCTCAATAGTAGAAAGAACTGAAGTGGTCAATAAAAACTGGc                                                                     <  1:1673581/150‑1 (MQ=255)
                   ccTGCTCAAGAATTTGAGCATTCTCACTTCCCTTTGTTTGCATATCGGGAGAATCAAGGAATGATTGGTTGCCATCATCGTTGGGATCAAACTCACGAATACAGCGTTTCTCAATAGTAGAAAGAACTGAAGTGGTCAACAAAAACTGGc                                                                     >  1:3430931/1‑150 (MQ=255)
                   ccTGCTCAAGAATTTGAGCATTCTCACTTCCCTTTGTTTGCATATCGGGAGAATCAAGGAATGATTGGTTGCCATCATCGTTGGGATCAAACTCACGAATACAGCGTTTCTCAATAGTAGAAAGAACTGAAGTGGTCAACAAAAACTGGc                                                                     >  1:3452704/1‑150 (MQ=255)
                   ccTGCTCAAGAATTTGAGCATTCTCACTTCCCTTTGTTTGCATATCGGGAGAATCAAGGAATGATTGGTTGCCATCATCGTTGGGATCAAACTCACGAATACAGCGTTTCTCAATAGTAGAAAGAACTGAAGTGGTCAACAAAAACTGGc                                                                     >  1:3685603/1‑150 (MQ=255)
                   ccTGCTCAAGAATTTGAGCATTCTCACTTCCCTTTGTTTGCATATCGGGAGAATCAAGGAATGATTGGTTGCCATCATCGTTGGGATCAAACTCACGAATACAGCGTTTCTCAATAGTAGAAAGAACTGAAGTGGTCAACAAAAAATGGc                                                                     >  1:3452706/1‑150 (MQ=255)
                      gCTCAAGAATTTGAGCATTCTCACTTCCCTTTGTTTGCATATCGGGAGAATCAAGGAATGATTGGTTGCCATCATCGTTGGGATCAAACTCACGAATACAGCGTTTCTCAATAGTAGAAAGAACTGAAGTGGTCAANAAAAACTGGCCAc                                                                  <  1:3120516/150‑1 (MQ=255)
                      gCTCAAGAATTTGAGCATTCTCACTTCCCTTTGTTTGCATATCGGGAGAATCAAGGAATGATTGGTTGCCATCATCGTTGGGATCAAACTCACGAATACAGCGTTTCTCAATAGTAGAAAGAACTGAAGTGGTCAACAAAAACTGGCCAc                                                                  <  1:3049400/150‑1 (MQ=255)
                         cAAGAATTTGAGCATTCTCACTTCCCTTTGTTTGTATATCGGGAGAATCAAGGAATGATCGGTTGCCATCATCGTTGGGATCAAACTCACGAATACAGCGTTTCTCAACAGTAGAAAGAACTGAAGTAGTCAACAAAAACTGGCCActgc                                                               >  1:3120715/1‑147 (MQ=255)
                         cAAGAATTTGAGCATTCTCACTTCCCTTTGTTTGCATATCGGGAGAATCAAGGAATGATTGGTTGCCATCCTCGTTGGGATCAAACTCACGAATACAGCGTTTCTCAATAGTAGAAAGAACTGAAGTGGTCAACAAAAACTGGCCActgc                                                               >  1:3015898/1‑147 (MQ=255)
                         cAAGAATTTGAGCATTCTCACTTCCCTTTGTTTGCATATCGGGAGAATCAAGGAATGATTGGTTGCCATCATCGTTGGGATCAAACTCACGAATACAGCGTTTCTCAATAGTAGAAAGAACTGAAGTGGTCAACAAAAACTGGCCActgc                                                               >  1:3015899/1‑147 (MQ=255)
                         cAAGAATTTGAGCATTCTCACTTCCCTTTGTTTGCATATCGGGAGAATCAAGGAATGATTGGTTGCCATCATCGTTGGGATCAAACTCACGAATACAGCGTTTCTCAATAGTAGAAAGAACTGAAGTGGTCAACAAAAACTGGCCActgc                                                               >  1:3120713/1‑147 (MQ=255)
                         cAAGAATTTGAGCATTCTCACTTCCCTTTGTTTGCATATCGGGAGAATCAAGGAATGATTGGTTGCCATCATCGTTGGGATCAAACTCACGAATACAGCGTTTCTCAATAGTAGAAAGAACTGAAGTGGTCAACAAAAACTGGCCActgc                                                               >  1:3120714/1‑147 (MQ=255)
                         cAAGAATTTGAGCATTCTCACTTCCCTTTGTTTGCATATCGGGAGAATCAAGGAATGATTGGTTGCCATCATCGTTGGGATCAAACTCACGAATACAGCGTTTCTCAATAGTAGAAAGAACTGAAGTGGTCAACAAAAACTGGCCACcgc                                                               >  1:2682468/1‑150 (MQ=255)
                         cAAGAATTTGAGCATTCTCACTTCCCTTTGTTTGCATATCGGGAGAATCAAGGAATGATTGGTTGCCATCATCGTTGGGATCAAACTCACGAATACAGCGTTTCTCAATAGTAGAAAGAACTGAAGTGGTCAACAAAAACTGGCCACcgc                                                               >  1:1486060/1‑150 (MQ=255)
                         cAAGAATTTGAGCATTCTCACTTCCCTTTGTTTGCATATCGGGAGAATCAAGGAATGATTGGTTGCCATCATCGTTGGGATCAAACTCACGAATACAGCGTTTCTCAATAGTAGAAAGAACTGAAGTGGTCAACAAAAACTGGCCACcgc                                                               >  1:952758/1‑150 (MQ=255)
                           aGAATTTGAGCATTCTCACTTCCCTTTGTTTGCATATCGGGAGAATCAAGGAATGATTGGTTGCCATCATCGTTGGGATCAAACTCACGAATACAGCGTTTCTCAATAGTAGAAAGAACTGAAGTGGTCAACAAAAACTGGCCACCGCGt                                                             >  1:2948651/1‑150 (MQ=255)
                               tttGAGCATTCTCACTTCCCTTTGTTTGCATATCGGGAGAATCAAGGAATGATTGGTTGCCATCATCGTTGGGATCAAACTCACGAATACAGCGTTTCTCAATAGTAGAAAGAACTGAAGTGGTCAACAAAAACTTGCCACCGCGTTaga                                                         <  1:3322594/150‑1 (MQ=255)
                               tttGAGCATTCTCACTTCCCTTTGTTTGCATATCGGGAGAATCAAGGAATGATTGGTTGCCATCATCGTTGGGATCAAACTCACGAATACAGCGTTTCTCAATAGTAGAAAGAACTGAAGTGGTCAACAAAAACTGGCCACCGCGTTaga                                                         <  1:3322595/150‑1 (MQ=255)
                                ttGAGCATTCTCACTTCCCTTTGTTTGCATATCGGGAGAATCAAGGAATGATTGGTTGCCATCATCGTTGGGATCAAACTCACGAATACAGCGTTTCTCAATAGTAGAAAGAACTGAAGTGGTCAACAAAAACTGGCCACCGCGTTagag                                                        >  1:2851065/1‑150 (MQ=255)
                                ttGAGCATTCTCACTTCCCTTTGTTTGCATATCGGGAGAATCAAGGAATGATTGGTTGCCATCATCGTTGGGATCAAACTCACGAATACAGCGTTTCTCAATAGTAGAAAGAACTGAAATGGTCAACAAAACCTGGCCACCGCGTTagag                                                        >  1:2707545/1‑150 (MQ=255)
                                    gCATTCTCACTTCCCTTTGTTTGCATATCGGGAGAATCAAGGAATGATTGGTTGCCATCATCGTTGGGATCAAACTCACGAATACAGCGTTTCTCAATAGTAGAAAGAACTGAAGTGGTCAACAAAAACTGGCCACCGCGTTAGAGtttt                                                    >  1:563181/1‑150 (MQ=255)
                                     cATTCTCACTTCCCTTTGTTTGCATATCGGGAGAATCAAGGAATGATTGGTTGCCATCATCGTTGGGATCAAACTCACGAATACAGCGTTTCTCAATAGTAGAAAGAACTGAAGTGGTCAACAAAAACTGGCCACCGCGTTAGAGttttt                                                   <  1:867544/150‑1 (MQ=255)
                                     cATTCTCACTTCCCTTTGTTTGCATATCGGGAGAATCAAGGAATGATTGGTTGCCATCATCGTTGGGATCAAACTCACGAATACAGCGTTTCTCAATAGTAGAAAGAACTGAAGTGGTCAACAAAAACTGGCCACCGCGTTAGAGttttt                                                   <  1:2455327/150‑1 (MQ=255)
                                      aTTCTCACTTCCCTTTGTTTGCATATCGGGAGAATCAAGGAATGATTGGTTGCCATCATCGTTGGGATCAAACTCACGAATACAGCGTTTCTCAATAGTAGAAAGAAATGAAGTGGTCAACAAAAACTGGCCACCGCGTTAGAGTTTTTc                                                  >  1:1766801/1‑150 (MQ=255)
                                        tctcACTTCCCTTTGTTTGCATATCGGGAGAATCAAGGAATGATTGGTTGCCATCATCGTTGGGATCAAACTCACGAATACAGCGTTTCTCAATAGTAGAAAGAACTGAAGTGGTCAACAAAAACTGGCCACCGCGTTAGAGTTTTTCCa                                                <  1:1466291/150‑1 (MQ=255)
                                        tctcACTTCCCTTTGTTTGCATATCGGGAGAATCAAGGAATGATTGGTTGCCATCATCGTTGGGATCAAACTCACGAATACAGCGTTTCTCAATAGTAGAAAGAACTGAAGTGGTCAACAAAAACTGGCCACCGCGTTAGAGTTTTTCCa                                                <  1:648759/150‑1 (MQ=255)
                                        tctcACTTCCCTTTGTTTGCATATCGGGAGAATCAAGGAATGATTGGTTGCCATCATCGTTGGGATCAAACTCACGAATACAGCGTTTCTCAATAGTAGAAAGAACTGAAGTGGTCAACAAAAACTGGCCACCGCGTTAGAGTTTTTCCa                                                <  1:1466292/150‑1 (MQ=255)
                                           cACTTCCCTTTGTTTGCATATCGGGAGAATCAAGGAATGATTGGTTGCCATCATCGTTGGGATCAAACTCACGAATACAGCGTTTCTCAATAGTAGAAAGAACTGAAGTGGTCAACAAAAACTGGCCACCGCGTTAGAGTTTTTCCAGTa                                             >  1:1525/1‑150 (MQ=255)
                                             cTTCCCTTTGTTTGCATATCGGGAGAATCAAGGAATGATTGGTTGCCATCATCGTTGGGATCAAACTCACGAATACAGCGTTTCTCAATAGTAGAAAGAACTGAAGTGGTCAACAAAAACTGGCCACCGCGTTAGAGTTTTTCCAGTATc                                           >  1:1868112/1‑150 (MQ=255)
                                             cTTCCCTTTGTTTGCATATCGGGAGAATCAAGGAATGATTGGTTGCCATCATCGTTGGGATCAAACTCACGAATACAGCGTTTCTCAATAGTAGAAAGAACTGAAGTGGTCAACAAAAACTGGCCACCGCGTTAGAGTTTTTCCAGTATc                                           >  1:1868108/1‑150 (MQ=255)
                                                  cTTTGTTTGCATATCGGGAGAATCAAGGAATGATTGGTTGCCATCATCGTTGGGATCAAACTCACGAATACAGCGTTTCTCAATAGTAGAAAGAACTGAAGTGGTCAACAAAAACTGGCCACCGCGTTAGAGTTTTTCCAGTATCGAttt                                      >  1:3653505/1‑150 (MQ=255)
                                                     tgtttgCATATCGGGAGAATCAAGGAATGATTGGTTGCCATCATCGTTGGGATCAAACTCACGAATACAGCGTTTCTCAATAGTAGAAAGAACTGAAGTGGTCAACAAAAACTGGCCACCGCGTTAGAGTTTTTCCAGTATCGATTTTcc                                   <  1:1892212/150‑1 (MQ=255)
                                                         tgCATATCGGGAGAATCAAGGAATGATTGGTTGCCATCATCGTTGGGATCAAACTCACGAATACAGCGTTTCTCAATAGTAGAAAGAACTGAAGTGGTCAACAAAAACTGGCCACCGCGTTAGAGTTTTTCCAGTATCGATTTTCCGAtt                               >  1:1088930/1‑150 (MQ=255)
                                                           cATATCGGGAGAATCAAGGAATGATTGGTTGCCATCATCGTTGGGATCAAACTCACGAATACAGCGTTTCTCAATAGTAGAAAGAACTGAAGTGGTCAACAAAAACTGGCCACCGCGTTAGAGTTTTTCCAGTATCGATTTTCCGATTCg                             >  1:2161079/1‑150 (MQ=255)
                                                                                 gATTGGTTGCCATCATCGTTGGGATCAAACTCACGAATACAGCGTTTCTCAATAGTAGAAAGAACTGAAGTGGTCAACAAAAACTGGCCACCGCGTTAGAGTTTTTCCAGTATCGATTTTCCGATTCGTTTGGGGGTAAcccaccattat       <  1:1575305/150‑11 (MQ=255)
                                                                                  aTTGGTTGCCATCATCGTTGGGATCAAACTCACGAATACAGCGTTTCTCAATAGTAGAAAGAACTGAAGTGGTCAACAAAAACTGGCCACCGCGTTAGAGTTTTTCCAGTATCGATTTTCCGATTCGTTTGGGGGTAAcccaccattata      >  1:979183/1‑139 (MQ=255)
                                                                                  aTTGGTTGCCATCATCGTTGGGATCAAACTCACGAATACAGCGTTTCTCAATAGTAGAAAGAACTGAAGTGGTCAACAAAAACTGGCCACCGCGTTAGAGTTTTTCCAGTATCGATTTTCCGATTCGTTTGGGGGTAAcccaccattata      >  1:979186/1‑139 (MQ=255)
                                                                                     ggTTGCCATCATCGTTGGGATCAAACTCACGAATACAGCGTTTCTCAATAGTAGAAAGAACTGAAGTGATCAACAAAAACTGGCCACCGCGTTAGAGTTTTTCCAGTATCGATTTTCCGATTCGTTTGGGGGTAAcccaccattatattc   >  1:2459325/1‑136 (MQ=21)
                                                                                      gTTGCCATCATCGTTGGGATCAAACTCACGAATACAGCGTTTCTCAATAGTAGAAAGAACTGAAGTGGTCAACAAAAACTGGCCACCGCGTTAGAGTTTTTCCAGTATCGATTTTCCGATTCGCTTGGGGGTAAcccaccattatattcg  >  1:2616671/1‑135 (MQ=18)
                                                                                                                                                  |                                                                                         
GTGGGATGTACGTTCATTACCTGCTCAAGAATTTGAGCATTCTCACTTCCCTTTGTTTGCATATCGGGAGAATCAAGGAATGATTGGTTGCCATCATCGTTGGGATCAAACTCACGAATACAGCGTTTCTCAATAGTAGAAAGAACTGAAGTGGTCAACAAAAACTGGCCACCGCGTTAGAGTTTTTCCAGTATCGATTTTCCGATTCGTTTGGGGGTAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  Xen14_94/7364‑7584

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.