New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? Xen14_105 = 4988276 (1.840)60 (0.510) 35/296 0.7 17.9% intergenic (+229/–) Xen14_04638/– IS3 family transposase ISCfr6/–
?Xen14_152 859 = NA (NA)intergenic (–/–) –/– –/–
Rejected: Frequency below/above cutoff threshold.

CTGCGTAAATCGTCATGGGGCTAAAATCCCCGAATAAGAGTTTGTAAAATCCAAGATACAGTCTGACTGTTTCAGGTTCTTTAATCCGCGATATAACGAAGCTCCCGGAGCTGCGTAAGGTCTTTTGGGGCTTAATATTTGACAAAGGTTGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCTGTGAACTCAGGCTGCCAGATCATCGTTTCCGATGGAAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  Xen14_152/710‑934
                                                                                                                                                     |                                                                                          
cTGCGTAAATCGTCATGGGGCTAAAATCCCCGAATAAGAGTTTGTAAAATCCAAGATACAGTCTGACTGTTTCAGGTTCTTTAATCCGCGATATAACGAAGCTCCCGGAGCTGCGTAAGGTCTTTTGGGGCTTAATATTTGACAAAGGtt                                                                                            <  1:3333964/150‑1 (MQ=255)
  gCGTAAATCGTCATGGGGCTAAAATCCCCGAATAAGAGTTTGTAAAATCCAAGATACAGTCTGACTGTTTCAGGTTCTTTAATCCGCGATATAACGAAGCTCCCGGAGCTGCGTAAGGTCTTTTGGGGCTTAATATTTGACAAAGGTTGa                                                                                          <  1:3600287/150‑1 (MQ=255)
    gTAAATCGTCATGGGGCTAAAATCCCCGAATAAGAGTTTGTAAAATCCAAGATACAGTCTGACTGTTTCAGGTTCTTTAATCCGCGATATAACGAAGCTCCCGGAGCTGCGTAAGGTCTTTTGGGGCTTAATATTTGATAAAGGTTGAAc                                                                                        >  1:2303972/1‑150 (MQ=255)
    gTAAATCGTCATGGGGCTAAAATCCCCGAATAAGAGTTTGTAAAATCCAAGATACAGTCTGACTGTTTCAGGTTCTTTAATCCGCGATATAACGAAGCTCCCGGAGCTGCGTAAGGTCTTTTGGGGCTTAATATTTGATAAAGGTTGAAc                                                                                        >  1:2303971/1‑150 (MQ=255)
      aaaTCGTCATGGGGCTAAAATCCCCGAATAAGAGTTTGTAAAATCCAAGATACAGTCTGACTGTTTCAGGTTCTTTAATACGCGATATAACGAAGCTCCCGGAGCTGCGTAAGGTCTTTTGGGGCTTAATATTTGACAAAGGTTGAACCg                                                                                      >  1:3399394/1‑150 (MQ=255)
           gTCATGGGGCTAAAATCCCCGAATAAGAGTTTGTAAAATCCAAGATACAGTCTGACTGTTTCAGGTTCTTTAATCCGCGATATAACGAAGCTCCCGGAGCTGCGTAAGGTCTTTTGGGGCTTAATATTTGACAAAGGTTGAACCGCCCCg                                                                                 >  1:2415182/1‑150 (MQ=255)
           gTCATGGGGCTAAAATCCCCGAATAAGAGTTTGTAAAATCCAAGATACAGTCTGACTGTTTCAGGTTCTTTAATCCGCGATATAACGAAGCTCCCGGAGCTGCGTAAGGTCTTTTGGGGCTTAATATTTGACAAAGGTTGAACCGCCCCg                                                                                 <  1:1809647/150‑1 (MQ=255)
           gTCATGGGGCTAAAATCCCCGAATAAGAGTTTGTAAAATCCAAGATACAGTCTGACTGTTTCAGGTTCTTTAATCCGCGATATAACGAAGCTCCCGGAGCTGCGTAAGGTCTTTTGGGGCTTAATATTTGACAAAGGTTGAACCGCCCCg                                                                                 <  1:1809648/150‑1 (MQ=255)
              aTGGGGCTAAAATCCCCGAATAAGAGTTTGTAAAATCCAAGATACAGTCTGACTGTTTCAGGTTCTTTAATCCGCGATATAACGAAGCTCCCGGAGCTGCGTAAGGTCTTTTGGGGCTTAATATTTGACAAAGGTTGAACCGCCCCGGGt                                                                              <  1:291669/150‑1 (MQ=255)
                  ggCTAAAATCCCCGAATAAGAGTTTGTAAAATCCAAGATACAGTCTGACTGTTTCTGGTTCTTTAATCCGCGATATAACGAAGCTCCCGGAGCTGCGTAAGGTCTTTTGGGGCTTAATATTTGACAAAGGTTGAACCGCCCCGGGTTTcc                                                                          <  1:2764421/150‑1 (MQ=255)
                   gCTAAAATCCCCGAATAAGAGTTTGTAAAATCCAAGATACAGTCTGACTGTTTCAGGTTCTTTAATCCGCGATATAACGAAGCTCCCGGAGCTGCGTAAGGTCTTTTGGGGCTTAATATTTGACAAAGGTTGAACCGCCCCGGGTTTCCt                                                                         >  1:1846110/1‑150 (MQ=255)
                    cTAAAATCCCCGAATAAGAGTTTGTAAAATCTAAGATACAGTCTGACTGTTTCAGGTTCTTTAATCCGCGATATAACGAAGCTCCCGGAGCTGCGTAAGGTCTTTTGGGGCTTAATATTTGACAAAGGTTGAAc                                                                                        <  1:3268773/134‑1 (MQ=255)
                     tAAAATCCCCGAATAAGAGTTTGTAAAATCCAAGATACAGTCTGACTGTTTCAGGTTCTTTAATCCGCGATATAACGAAGCTCCCGGAGCTGCGTAAGGTCTTTTGGGGCTTAATATTTGACAAAGGTTGAACCGCCCCAGGTTTCCTgg                                                                       <  1:592135/150‑1 (MQ=255)
                         aTCCCCGAATAAGAGTTTGTAAAATCCAAGATACAGTCTGACTGTTTCAGGTTCTTTAATCCGCGATATAACGAAGCTCCCGGAGCTGCGTAAGGTCTTTTGGGGCTTAATATCTGACAAAGGTTGAACCGCCCCGGGTTTCCTGGagag                                                                   <  1:3306228/150‑1 (MQ=255)
                                   aaGAGTTTGTAAAATCCAAGATACAGTCTGACTGTTTCAGGTTCTTTAATCCGCGATATAACGAAGCTCCCGGAGCTGCGTAAGGTCTTTTGGGGCTTAATATTTGACAAAGGTTGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCt                                                         <  1:311221/150‑1 (MQ=255)
                                      agTTTGTAAAATCCAAGATACAGTCTGACTGTTTCAGGTTCTTTAATCCGCGATATAACGAAGCTCCCGGAGCTGCGTAAGGTCTTTTGGGGCTTAATATTTGACAAAGGTTGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCtgtg                                                      <  1:187083/150‑1 (MQ=255)
                                       gTTTGTAAAATCCAAGATACAGTCTGACTGTTTCAGGTTCTTTAATCCGCGATATAACGAAGCTCCCGGAGCTGCGTAAGGTCTTTTGGGGCTTAATATTTGACAAAGGTTGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCTGTGa                                                     >  1:333307/1‑150 (MQ=255)
                                         ttGTAAAATCCAAGATACAGTCTGACTGTTTCAGGTTCTTTAATCCGCGATATAACGAAGCTCCCGGAGCTGCGTAAGGTCTTTTGGGGCTTAATATTTGACAAAGGTTGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCTGTGAAc                                                   <  1:951781/150‑1 (MQ=255)
                                         ttGTAAAATCCAAGATACAGTCTGACTGTTTCAGGTTCTTTAATCCGCGATATAACGAAGCTCCCGGAGCTGCGTAAGGTCTTTTGGGGCTTAATATTTGACAAAGGTTGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCTGTGAAc                                                   <  1:951780/150‑1 (MQ=255)
                                              aaaTCCAAGATACAGTCTGACTGTTTCAGGTTCTTTAATCCGCGATATAACGAAGCTCCCGGAGCTGCGTAAGGTATTTTGGGGCTTAATATTTGACAAAGGTTGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCTGTGAACTCAgg                                              <  1:1102667/150‑1 (MQ=255)
                                                aTCCAAGATACAGTCTGACTGTTTCAGGTTCTTTAATCCGCGATATAACGAAGCTCCCGGAGCTGCGTAAGGTCTTTTGGGGCTTAATATTTGACAAAGGTTGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCTGTGAACTCAGGCt                                            >  1:1227852/1‑150 (MQ=255)
                                                  ccAAGATACAGTCTGACTGTTTCAGGTTCTTTAATCCGCGATATAACGAAGCTCCCGGAGCGGCGTAAGGTCTTTTGGGGCTTAATATGTGACAAAGGTTGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCTGTGAACTCAGGCTGc                                          <  1:2804205/150‑1 (MQ=255)
                                                   cAAGATACAGTCTGACTGTTTCAGGTTCTTTAATCCGCGATATAACGAAGCTCCCGGAGCTGCGTAAGGTCTTTTGGGGCTTAATATTTGACAAAGGTTGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCTGTGAACTCAGGCTGcc                                         <  1:3002524/150‑1 (MQ=255)
                                                    aaGATACAGTCTGACTGTTTCAGGTTCTTTAATCCGCGATATAACGAAGCTCCCGGAGCTGCGTAAGGTCTTTTGGGGCTTAATATTTGACAAAGGTTGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCTGTGAACTCAGGCTGCCa                                        <  1:3286511/150‑1 (MQ=255)
                                                       aTACAGTCTGACTGTTTCAGGTTCTTTAATCCGCGATATAACGAAGCTCCCGGAGCTGCGTAAGGTCTTTTGGGGCTTAATATTTGACAAAGGTTGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCTGTGAACTCAGGCTGCCAGat                                     >  1:1281170/1‑150 (MQ=255)
                                                          cAGTCTGACTGTTTCAGGTTCTTTAATCCGCGATATAACGAAGCTCCCGGAGCTGCGTAAGGTCTTTTGGGGCTTAATATTTGACAAAGGTTGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCTGTGAACTCAGGCTGCCAGatcat                                  >  1:2780564/1‑150 (MQ=255)
                                                            ttCTGACTGTTTCAGGTTCTTTAATCCGCGATATAACGAAGCTCCCGGAGCTGCGTAAGGTCTTTTGGGGCTTAATATTTGACAAAGGTTGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCTGTGAACTCAGGCTGCCAGATCATCg                                <  1:1364170/149‑1 (MQ=255)
                                                             tttGACTGTTTCAGGTTCTTTAATCCGCGATATAACGAAGCTCCCGGAGCTGCGTAAGGTCTTTTGGGGCTTAATATTTGACAAAGGTTGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCTGTGAACTCAGGCTGCCAGATCATCGt                               <  1:3025373/148‑1 (MQ=255)
                                                             tttGACTGTTTCAGGTTCTTTAATCCGCGATATAACGAAGCTCCCGGAGCTGCGTAAGGTCTTTTGGGGCTTAATATTTGACAAAGGTTGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCTGTGAACTCAGGCTGCCAGATCATCGt                               <  1:3025374/148‑1 (MQ=255)
                                                                   tGTTTCAGGTTCTTTAATCCGCGATATAACGAAGCTCCCGGAGCTGCGTAAGGTCTTTTGGGGCTTAATATTTGACAAAGGTTGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCTGTGAACTCAGGCTGCCAGATCATCGTTTCCGa                         <  1:3095650/150‑1 (MQ=255)
                                                                     tttCAGGTTCTTTAATCCGCGATATAACGAAGCTCCCGGAGCTGCGTAAGGTCTTTTGGGGCTTAATATTTGACAAAGGTTGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCTGTGAACTCAGGCTGCCAGATCATCGTTTCCGATg                       <  1:1632391/150‑1 (MQ=255)
                                                                           gTTCTTTAATCCGCGATATAACGAAGCTCCCGGAGCTGCGTAAGGTCTTTTGGGGCTTAATATTTGACAAAGGTTGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCTGTGAACTCAGGCTGCCAGATCATCGTTTCCGATGGAAGCa                 >  1:752214/1‑150 (MQ=255)
                                                                            ttCTTTAATCCGCGATATAACGAAGCTCCCGGAGCTGCGTAAGGTCTTTTGGGGCTTAATATTTGACAAAGGTTGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCTGTGAACTCAGGCTGCCAGATCATCGTTTCCGATGGAAGCat                >  1:1050715/1‑149 (MQ=255)
                                                                              cTTTAATCCGCGATATAACGAAGCTCCCGGAGCTGCGTAAGGTCTTTTGGGGCTTAATATTTGACAAAGTTTGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCTGTGAACTGAGGCTGCCAGATCATCGTTTCCGATGGAAGCataa              <  1:3575333/150‑4 (MQ=255)
                                                                              cTTTAATCCGCGATATAACGAAGCTCCCGGAGCTGCGTAAGGTCTTTTGGGGCTTAATATTTGACAAAGGTTGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCTGTGAACTCAGGCTGCCAGATCATCGTTTCCGATGGAAGCataa              >  1:1101666/1‑147 (MQ=255)
                                                                                 tagttcgcgATATAACGAAGCTCCCGGAGCTGCGTAAGGTCTTTTGGGGCTTAATATTTGACAAAGGTTGAACCGCCCCGGGTTTCCTGGAGAGTATTTTATCTGTGAACTCAGGCTGCCAGATCATCGTTTCCGATGGAAGCataataa           <  1:3063188/145‑7 (MQ=25)
                                                                                 tAATCCGCGATATAACGAAGCTCCCGGAGTTGCGTAAGGTCTTTTGGGGCTTAATATTTGACAAAGGTTGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCTGTGAACTCAGGCTGCCAGATCATCGTTTCCGATGGAAGCataataa           >  1:3168746/1‑144 (MQ=255)
                                                                                    tCCGCGATATAACGAAGCTCCCGGAGCTGCGTAAGGTCTTTTGGGGCTTAATATTTGACAAAGGTTGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCTGTGAACTCAGGCTGCCAGATCATCGTTTCCGATGGAAGCataataagct        <  1:1917025/150‑10 (MQ=255)
                                                                                     ccGCGATATAACGAAGCTCCCGGAGCTGCGTAAGGTCTTTTGGGGCTTAATATTTGACAAAGGTTGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCTGTGAACTCAGGCTGCCAGATCATCGTTTCCGATGGAAGCataataagctt       >  1:3177740/1‑140 (MQ=255)
                                                                                          atatAACGAAGCTCCCGGAGCTGCGTAAGGTCTTTTGGGGCTTAATATTTGACAAAGGTTGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCTGTGAACTCTGGCTGCCAGATCATCGTTTCCGATGGAAGCataataagctttttct  >  1:2884669/1‑135 (MQ=18)
                                                                                                                        tCTTTTGGGGCTTAATATTTGACAAAGGTTGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCTGTGAACTCAGGCTGCCAGATCATCGTTTCCGATGGAAGCataataagct        <  1:2174038/114‑10 (MQ=255)
                                                                                                                                                     |                                                                                          
CTGCGTAAATCGTCATGGGGCTAAAATCCCCGAATAAGAGTTTGTAAAATCCAAGATACAGTCTGACTGTTTCAGGTTCTTTAATCCGCGATATAACGAAGCTCCCGGAGCTGCGTAAGGTCTTTTGGGGCTTAATATTTGACAAAGGTTGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCTGTGAACTCAGGCTGCCAGATCATCGTTTCCGATGGAAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  Xen14_152/710‑934

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.