| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Xen14_126 | 2,062 | 0 | T | C | 78.5% | 1286.6 / 308.0 | 778 | A92A (GCT→GCC) | Xen14_04726 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (59/108); new base C (311/298); total (371/407) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.27e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.66e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 791 total aligned reads displayed.
CAATGATAATGTTATTTTCAAATGGCTCAGACTTTGGCAAAACGAAGGGCGTATATCGCGGCGTCTTTCGGTAACAACCTCTTCTGACACTGGCGTTGAATTATTACCTGTGGAGATAACGCCGGATGAGCCGAAAGAACCGGTGGCTGCTCTTACTCCGTCTTTA‑‑‑‑‑‑TCCA‑‑‑C‑‑‑‑‑C‑‑‑CAGACTACTGTCAGTGCCAGCTCCTGCAAGGTGGAGTTCCGTCACGGTAACATGACGCTGGAAAATCCTTCACCAGAGCTGCTCACGGTGTTGATCCGCGAACTGAGTGGGAGGGGAAGATGATTTC > Xen14_126/1912‑2210 | tAATGTTATTTTCAAATGGCTCAGACTTTGGCAAAACGAAGGGCGTATATCGCGGCGTCTTTCGGTAACAACCTCTTCTGACACTGGCGTTGAATTATTACCTGTGGAGATAACGCCGGATGAGCCGAAAGAACCGGTGGCTGCTCTTAc < 1:3376653/150‑1 (MQ=255) aTGTTATTTTCAAATGGCTCAGACTTTGGCAAAACGAAGGGCGTATATCGCGGCGTCTTTCGGTAACAACCTCTTCTGACACTGGCGTTGAATTATTACCTGTGGAGATAACGCCGGATGAGCCGAAAGAACCGGTGGCTGCTCTCACTc > 1:1081985/1‑150 (MQ=255) tATTTTCAAATGGCTCAGACTTTGGCAAAACGAAGGGCGTATATCGCGGCGTCTTTCGGTAACAACCTCTTCTGACACTGGCGTTGAATTATTACCTGTGGAGATAACGCCGGATGAGCCGAAAGAACCGGTGGCTGCTCTTACTCCGTc > 1:3415115/1‑150 (MQ=255) aaaTGGCTCAGGCTCTGGCAGAACGAAGGGCATGTTTCGCGGCGTCTTCCGGTAACAACCTCTTCTGACACTGGCGTTGAATTATTACCTGTAGAAATAACGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCGTCTTTA‑‑‑‑‑‑Tcc > 1:650037/1‑150 (MQ=255) aTGGCTCAGGCTCTGGCAGAACGAAGGGCGTGTTTCGCGGCGTCTTCCGGTAACGACCTCTTCTGACACTGGCGTTGAATTATTACCTGTAGAAATAACGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCATCTTTA‑‑‑‑‑‑TCCA‑‑‑c < 1:3012924/150‑1 (MQ=255) aTGGCTCAGACTTTGGCAAAACGAAGGGCGTATATCGCGGCGTCTTTCGGTAACAACCTCTTCTGACACTGGCGTTGAATTATTACCTGTGGAGATAACGCCGGATGAGCCGAAAGAACCGGTGGCTGCTCTTACTCCGTCTTTA‑‑‑‑‑‑TCCA‑‑‑c > 1:1976933/1‑150 (MQ=255) gCTCAGGCTCTGGCAGAACGAAGGGCGTGTTTCGCGGTGTCTTCCGGTAACGACCTCTTCTGACACTGGCGTTGAATTATTACCTGTAGAAATAACGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCATCTTTA‑‑‑‑‑‑TCCA‑‑‑cttc < 1:933392/150‑4 (MQ=255) gCTCAGGCTCTGGCAGAACGAAGGGCGTGTTTCGCGGCGTCTTCCGGTAACGACCTCTTCTGACACTGGCGTTGAATTATTACCTGTAGAAATAACGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCATCTTTA‑‑‑‑‑‑TCCA‑‑‑cttc > 1:2553208/1‑147 (MQ=255) cTCAGGCTCTGGCAGAACGAAGGGCGTGTTTCGCGGCGTCTTCCGGTAACGACCTCTTCTGACACTGGCGTTGAATTATTACCTGTAGAAATAACGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCATCTTTA‑‑‑‑‑‑TCCA‑‑‑cttcc < 1:128026/150‑5 (MQ=255) cTCAGGCTCTGGCAGAACGAAGGGCGTGTTTCGCGGCGTCTTCCGGTAACGACCTCTTCTGACACTGGCGTTGAATTATTACCTGTAGAAATAACGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCATCTTTA‑‑‑‑‑‑TCCA‑‑‑cttcc < 1:2875089/150‑5 (MQ=255) cTCAGGCTCTGGCAGAACGAAGGGCGTGTTTCGCGGCGTCTTCCGGTAACGACCTCTTCTGACACTGGCGTTGAATTATTACCTGTAGAAATAACACCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCATCTTTA‑‑‑‑‑‑TCCA‑‑‑cttcc > 1:1463587/1‑146 (MQ=255) aggctctGGCAGAACGAAGGGCGTGTTTCGCGGCGTCTTCCGGTAACGACCTCTTCTGACACTGGCGTTGAATTATTACCTGTAGAAATAACGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCATCTTTA‑‑‑‑‑‑TCCA‑‑‑cttccact < 1:358740/144‑8 (MQ=255) gctctGGCAGAACGAAGGGCATGTTTCGCGGCGTCTTCCGGTAACAACCTCTTCTGACACTGGCGTTGAATTATTACCTGTAGAAATAACGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCGTCTTTA‑‑‑‑‑‑TCCA‑‑‑cttccactca > 1:3317123/5‑141 (MQ=255) ctctGGCAGAACGAAGGGCGTGTTTCGCGGCGTCTTCCGGTAACGACCTCTTCTGACACTGGCGTTGAATTATTACCTGTAGAAATAACGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCATCTTTA‑‑‑‑‑‑TCCA‑‑‑cttccactcag > 1:1870597/4‑140 (MQ=255) ctctGGCAGAACGAAGGGCGTGTTTCGCGGCGTCTTCCGGTAACGACCTCTTCTGACACTGGCGTTGAATTATTACCTGTAGAAATAACGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCATCTTTA‑‑‑‑‑‑TCCA‑‑‑cttccactcag > 1:1045367/4‑140 (MQ=255) ctctGGCAGAACGAAGGGCGTGTTTCGCGGCGTATTCCGGTAACGACCTCTTCTGACACTGGCGTTGAATTATTACCCGTAGAAATAACGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCATCTTTA‑‑‑‑‑‑TCCA‑‑‑cttccactcag > 1:1557856/4‑140 (MQ=255) tctGGCAGAACGAAGGGCATGTTTCGCGGCGTCTTCCGGTAACAACCTCTTCTGACACTGGCGTTGAATTATTACCTGTAGAAATAACGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCGTCTTTA‑‑‑‑‑‑TCCA‑‑‑cttccactcaga > 1:1002077/3‑139 (MQ=255) tGGCAAAACGAAGGGCGTATATCGCGGCGTCTTTCGGTAACAACCTCTTCTGACACTGGCGTTGAATTATTACCTGTGGAGATAACGCCGGATGAGCCGAAAGAACCGGTGGCTGCTCTTACTCCGTCTTTA‑‑‑‑‑‑TCCA‑‑‑C‑‑‑‑‑C‑‑‑CAGa < 1:1580374/142‑1 (MQ=255) ggCAGAACGAAGGGCGTGTTTCGCGGCGTCTTCCGGTAACGACCTCTTCTGACACTGGCGTTGAATTATTACCTGTAGAAATAACGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCATCTTTA‑‑‑‑‑‑TCCA‑‑‑cttccactcagacca > 1:3445788/1‑136 (MQ=255) ggCAGAACGAAGGGCGTGTTTCGCGGCGTCTTCCGGTAACGACCTCTTCTGACACTGGCGTTGAATTATTACCTGTAGAAATAACGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCATCTTTA‑‑‑‑‑‑TCCA‑‑‑cttccactcagacca < 1:3085928/150‑15 (MQ=255) ggCAGAACGAAGGGCATGTTTCGCGGCGTCTTCCGGTAACAACCTCTTCTGACACTGGCGTTGAATTATTACCTGTAGAAATAACGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCGTCTTTA‑‑‑‑‑‑TCCA‑‑‑cttccactcagacca > 1:1257299/1‑136 (MQ=255) aaaaCGAAGGGCGTATATCGCGGCGCTTTTCGGGAACAACCTCTTCTGAGACTGGCGTTGAATTGTTACCTGTGGAGATAACGCCGGAGGAGCCGAAAGAACCGGTGGCTGCTCTTACTCCGTCTTTA‑‑‑‑‑‑TCCA‑‑‑C‑‑‑‑‑C‑‑‑CAGactac < 1:2254336/142‑1 (MQ=255) tataTCGCGGCGTCTTTCGGTAACAACCTCTTCTGACACTGGCGTTGAATTATTACCTGTGGAGATAACGCCGGATGAGCCGAAAGAACCGGTGgctgct > 1:1216775/1‑100 (MQ=255) gcggcgTCTTTCGGTAACAACCTCTTCTGACACTGGCGTTGAATTATTACCTGTGGAGATAACGCCGGATGAGCCGAAAGAACCGGTGACTGCTCTTACTCCGTCTTTA‑‑‑‑‑‑TCCA‑‑‑C‑‑‑‑‑C‑‑‑CAGACTACTGTCAGTGCCAGCTCCTGCAAGGTGGa > 1:1231310/1‑150 (MQ=255) ggcgTCTTCCGGTAACGACCTCTTCTGACACTGGCGTTGAATTATTACCTGTAGAAATAACGCCGGATGAGCCGAAAGAACCGGTGGCTGCTCTTACTCCGTCTTTA‑‑‑‑‑‑TCCA‑‑‑C‑‑‑‑‑C‑‑‑CAGACTACTGTCAGTGCCAGCTCCTGCAAGGTGGAGt < 1:3339197/150‑1 (MQ=255) gcgTCTTTCGGTAACAACCTCTTCTGACACTGGCGTTGAATTATTACCTGTGGAGATAACGCCGGATGAGCCGAAAGAACCGGTGGCTGCTCTTACTCCGTCTTTA‑‑‑‑‑‑TCCA‑‑‑C‑‑‑‑‑C‑‑‑CAGACTACTGTCAGTGCCAGCTCCTGCAAGGTGGAGtt < 1:1813681/150‑1 (MQ=255) cgTCTTCCGGTAACGACCTCTTCTGACACTGGCGTTGAATTATTACCTGTAGAAATAACGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCGTCTTTA‑‑‑‑‑‑TCCA‑‑‑Cttccactcagaccagagtcagtgccagttcctgcaaggtg < 1:3727885‑M1/150‑41 (MQ=255) gTCTTCCGGTAACGACCTCTTCTGACACTGGCGTTGAATTATTACCTGTGGAAATAACGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCATCTTTA‑‑‑‑‑‑TCCA‑‑‑Cttccactcagaccagagtcagtgccagttcctgcaaggtgg < 1:682563‑M1/150‑42 (MQ=255) tttCGGTAACAACCTCTTCTGACACTGGCGTTGAATTATTACCTGTGGAGATAACGCCGGATGAGCCGAAAGAACCGGTGGCTGCTCTTACTCCGTCTTTA‑‑‑‑‑‑TCCA‑‑‑C‑‑‑‑‑C‑‑‑CATACTACTGTCAGTGCCAGCTCCTGCAAGGTGGAGTTCCGTc < 1:3243728/150‑1 (MQ=255) cGGTAACGACCTCTTCTGACACTGGCGTTGAATTATTACCTGTAGAAATAACGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCGTCTTTA‑‑‑‑‑‑TCCA‑‑‑Cttccactcagaccagagtcagtgccagttcctgcaaggtggaattcc > 1:844080‑M1/1‑103 (MQ=255) cGGTAACAACCTCTTCTGACACTGGCGTTGAATTATTACCTGTGGAGATAACGCCGGATGAGCCGAAAGAACCGGTGGCTGCTCTTACTCCGTCTTTA‑‑‑‑‑‑TCCA‑‑‑C‑‑‑‑‑C‑‑‑CAGACTACTGTCAGTGCCAGCTCCTGCAAGGTGGAGTTCCGTCACg < 1:2739689/150‑1 (MQ=255) cGGTAACAACCTCTTCTGACACTGGCGTTGAATTATTACCTGTGGAGATAACGCCGGATGAGCCGAAAGAACCGGTGGCTGCTCTTACTCCGTCTTTA‑‑‑‑‑‑TCCA‑‑‑C‑‑‑‑‑C‑‑‑CAGACTACTGTCAGTGCCAGCTCCTGCAAGGTGGAGTTCCGTCACg < 1:2567488/150‑1 (MQ=255) ggTAACGACCTCTTCTGACACTGGCGTTGAATTATTACCTGTAGAAATAACGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCATCTTTA‑‑‑‑‑‑TCCA‑‑‑Cttccactcagaccagagtcagtgccagttcctgcaaggtggaattccg < 1:2415388‑M1/150‑49 (MQ=255) ggTAACAACCTCTTCTGACACTGGCGTTGAATTATTACCTGTGGAGATAACGCCGGATGAGCCGAAAGAACCGGTGGCTGCTCTTACTCCGTCTTTA‑‑‑‑‑‑TCCA‑‑‑C‑‑‑‑‑C‑‑‑CAGACTACTGTCAGTGCCAGCTCCTGCAAGGTGGAGTTCCGTCACgg < 1:3185267/150‑1 (MQ=255) gTAACAACCTCTTCTGACACTGGCGTTGAATTATTACCTGTGGAGATAACGCCGGATGAGCCGAAAGAACCGGTGGCTGCTCTTACTCCGTCTTTA‑‑‑‑‑‑TCCA‑‑‑C‑‑‑‑‑C‑‑‑TAGACTACTGTCAGTGCCAGCTCCTGCAAGGTGGAGTTCCGTCACGGt > 1:1420846/1‑150 (MQ=255) aacgacctctTCTGACACTGGCGTTGAATTATTACCTGTAGAAATAACGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCATCTTTA‑‑‑‑‑‑TCCA‑‑‑Cttccactcagaccagagtcagtgccagttcctgcaaggtggaattccgtca < 1:1940081‑M1/146‑52 (MQ=255) acgacctcTTCTGACACTGGCGTTGAATTATTACCTGTAGAAATAACGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCATCTTTA‑‑‑‑‑‑TCCA‑‑‑Cttccactcagaccagagtcagtgccagttcctgcaaggtggaattccgtcac > 1:1634113‑M1/4‑98 (MQ=255) cgacctCTTCTGACACTGGCGTTGAATTATTACCTGTAGAAATAACGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCATCTTTA‑‑‑‑‑‑TCCA‑‑‑Cttccactcagaccagagtcagtgccagttcctgcaaggtggaattccgtcacg > 1:943934‑M1/3‑97 (MQ=255) cgacctCTTCTGACACTGGCGTTGAATTATTACCTGTAGAAATAACGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCATCTTTA‑‑‑‑‑‑TCCA‑‑‑Cttccactcagaccagagtcagtgccagttcctgcaaggtggaattccgtcacc > 1:1523989‑M1/3‑97 (MQ=255) cgacCTCTTCTGACACTGGCGTTGAATTATTACCTGTAGAAATAACGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCATCTTTA‑‑‑‑‑‑TCCA‑‑‑CTTCCACT‑‑CAGACCGGAGTCAGTGCCAGTTCCTGCAAGGTGGAATTCCGTCACg > 1:2642745/3‑150 (MQ=255) caacCTCTTCTGACACTGGCGTTGAATTATTACCTGTGGAGATAACGCCGGATGAGCCGAAAGAACCGGTGGCTGCTCTTACTCCGTCTTTA‑‑‑‑‑‑TCCA‑‑‑C‑‑‑‑‑C‑‑‑CAGACTACTGTCAGTGCCAGCTCCTGCAAGGTGGAGTTCCGTCACGGTAACa > 1:606687/1‑150 (MQ=255) caacCTCTTCTGACACTGGCGTTGAATTATTACCTGTAGAAATAACGCCGGATGAGCATAAAGAACCTGTGGCGGCCATTGCGCCGTCTTTA‑‑‑‑‑‑TCCA‑‑‑Cctccactcagaccagagtcagtgccagttcctgcaaggtggaattccgtcacg > 1:3677322‑M1/1‑97 (MQ=255) gaccTCTTCTGACACTGGCGTTGAATTATTACCTGTAGAAATAACGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCGTCTTTA‑‑‑‑‑‑TCCA‑‑‑Cttccactcagaccagagtcagtgccagttcctgcaaggtggaattccgtcacgg < 1:3805106‑M1/149‑55 (MQ=255) gaccTCTTCTGACACTGGCGTTGAATTATTACCTGTAGAAATAACGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCGTCTTTA‑‑‑‑‑‑TCCA‑‑‑Cttccactcagaccagagtcagtgccagttcctgcaaggtggaattccgtcacgg < 1:2065868‑M1/149‑55 (MQ=255) gaccTCTTCTGACACTGGCGTTGAATTATTACCTGTAGAAATAACGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCGTCTTTA‑‑‑‑‑‑TCCA‑‑‑Cttccactcagaccagagtcagtgccagttcctgcaaggtggaattccgtcacgg < 1:1322780‑M1/149‑55 (MQ=255) gaccTCTTCTGACACTGGCGTTGAATTATTACCTGTAGAAATAACGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCATCTTTA‑‑‑‑‑‑TCCA‑‑‑Cttccactcagaccagagtcagtgccagttcctgcaaggtggaattccgtcacgg > 1:2908660‑M1/2‑96 (MQ=255) acCTCTTCTGACACTGGCGTTGAATTATTACCTGTGGAGATAACGCCGGATGAGCCGAAAGAACCGGTGGCTGCTCTTACTCCGTCTTTA‑‑‑‑‑‑TCCA‑‑‑C‑‑‑‑‑C‑‑‑CAGACTACTGTCAGTGCCAGCTCCTGCAAGGTGGaa > 1:2316741/1‑131 (MQ=255) acCTCTTCTGACACTGGCGTTGAATTATTACCTGTGGAGATAACGCCGGATGAGCCGAAAGAACCGGTGGCTGCTCTTACTCCGTCTTTA‑‑‑‑‑‑TCCA‑‑‑C‑‑‑‑‑C‑‑‑CAGACTACTGTCAGTGCCAGCTCCTGCAAGGTGGaa > 1:2622868/1‑131 (MQ=255) acCTCTTCTGACACTGGCGTTGAATTATTACCTGTAGAAATAACGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCGTCTTTA‑‑‑‑‑‑TCCA‑‑‑Cttccactcagaccagagtcagtgccagttcctgcaaggtggaattccgtcacggt > 1:3121028‑M1/1‑95 (MQ=255) ccTCTTCTGACACTGGCGTTGAATTATTACCTGTAGAAATAACGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCATCTTTA‑‑‑‑‑‑TCCA‑‑‑Cttccactcagaccagagtcagtgccagttcctgcaaggtggaattccgtcacggta > 1:2455070‑M1/1‑94 (MQ=255) ccTCTTCTGACACTGGCGTTGAATTATTACCTGTAGAAATAACGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCATCTTTA‑‑‑‑‑‑TCCA‑‑‑Cttccactcagaccagagtcagtgccagttcctgcaaggtggaattccgtcacggta > 1:1617452‑M1/1‑94 (MQ=255) ctctTCTGACACTGGCGTTGAATTATTACCTGTAGAAATAACGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCGTCTTTA‑‑‑‑‑‑TCCA‑‑‑Cttccactcagaccagagtcagtgccagttcctgcaaggtggaattccgtcacggtaa > 1:796320‑M1/1‑93 (MQ=255) tntGACACTGGCGTTGAATTATTACCTGTAGAAATAACGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCATCTTTA‑‑‑‑‑‑TCCA‑‑‑Cttccactcagaccagagtcagtgccagttcctgcaaggtggaattccgtcacggtaacatg > 1:3561025‑M1/1‑89 (MQ=255) acTGGCGTTGAATTATTACCTGTGGAGATAACGCCGGATGAGCCGAAAGAACCGGTGGCTGCTCTTACTCCGTCTTTA‑‑‑‑‑‑TCCA‑‑‑C‑‑‑‑‑C‑‑‑CAGACTACTGTCAGTGCCAGCTCCTGCAAGGTGGAGTTCCGTCACGGTAACATGACGCTGGAAAAt < 1:1400221/150‑1 (MQ=255) acTGGCGTTGAATTATTACCTGTGGAGATAACGCCGGATGAGCCGAAAGAACCGGTGGCTGCTCTTACTCCGTCTTTA‑‑‑‑‑‑TCCA‑‑‑C‑‑‑‑‑C‑‑‑CAGACTACTGTCAGTGCCAGCTCCTGCAAGGTGGAGTTCCGTCACGGTAACATGACGCTGGAAAAt > 1:3278758/1‑150 (MQ=255) acTGGCGTTGAATTATTACCTGTAGAAATAACGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCATCTTTA‑‑‑‑‑‑TCCA‑‑‑Cttccactcagaccagagtcagtgccagttcctgcaaggtggaattccgtcacggtaacatgacgctg < 1:2019723‑M1/150‑68 (MQ=255) acTGGCGTTGAATTATTACCCGTAAAAATAAAGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCATCTTTA‑‑‑‑‑‑TCCACTTC‑‑‑‑‑CAATCAGACCAGAGTCAGTACCAGTTCCTGCAAGGTGGAATTCGGTCACGGTAACATGACGCTg < 1:468441/150‑1 (MQ=255) cTGGCGTTGAATTATTACCTGTAGAAATAACGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCATCTTTA‑‑‑‑‑‑TCCA‑‑‑Cttccactcagaccagagtcagtgccagttcctgcaaggtggaattccgtcacggtaacatgacgctgg > 1:30716‑M1/1‑82 (MQ=255) ggCGTTGAATTATTACCTGTGGAGATAACGCCGGATGAGCCGAAAGAACCGGTGGCTGCTCTTACTCCGTCTTTA‑‑‑‑‑‑TCCA‑‑‑C‑‑‑‑‑C‑‑‑CAGACTACTGTCAGTGCCAGCTCCTGCAAGGTGGAGTTCCGTCACGGTAACATGACGCTGGAAAATCCt > 1:2093555/1‑150 (MQ=255) gCGTTGAATTATTACCTGTAGAAATAACGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCATCTTTATTCACTTCCA‑‑‑C‑‑‑‑‑T‑‑‑CAGACCAGAGTCAGTGCCAGTTCCTGCAAGGTGGAATTCCGTCACGGTAACATGACGCTGaaaa < 1:1023697/150‑1 (MQ=255) gTTGAATTATTACCTGTAGAAATAACGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCGTCTTTA‑‑‑‑‑‑TCCA‑‑‑Cttccactcagaccagagtcagtgccagttcctgcaaggtggaattccgtcacggtaacatgacgctggaaaat < 1:2033215‑M1/150‑74 (MQ=255) gTTGAATTATTACCTGTAGAAATAACGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCGTCTTTA‑‑‑‑‑‑TCCA‑‑‑Cttccactcagaccagagtcagtgccagttcctgcaaggtggaattccgtcacggtaacatgacgctggaaaat < 1:2376432‑M1/150‑74 (MQ=255) gTTGAATTATTACCTGTAGAAATAACGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCATCTTTA‑‑‑‑‑‑TCCA‑‑‑Cttccactcagaccagagtcagtgccagttcctgcaaggtggaattccgtcacggtaacatgacgctggaaaat < 1:1689645‑M1/150‑74 (MQ=255) gTTGAATTATTACCTGTAGAAATAACGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCATCTTTA‑‑‑‑‑‑TCCA‑‑‑Cttccactcagaccagagtcagtgccagttcctgcaaggtggaattccgtcacggtaacatgacgctggaaaat < 1:2854186‑M1/150‑74 (MQ=255) ttGAATTATTACCTGTAGAAATAACGCCGGATGGGCAGAAAGAACCTGTGGCGGCCATTGCGCCGTCTTTA‑‑‑‑‑‑TCCA‑‑‑Cttccactcagaccagagtcagtgccagttcctgcaaggtggaattccgtcacggtaacatgacgctggaaaatc > 1:2489120‑M1/1‑76 (MQ=255) ttGAATTATTACCTGTAGAAATAACGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCATCTTTA‑‑‑‑‑‑TCCA‑‑‑Cttccactcagaccagagtcagtgccagttcctgcaaggtggaattccgtcacggtaacatgacgctggaaaatc < 1:2769001‑M1/150‑75 (MQ=255) gAATTATTACCTGTAGAAATAACGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCATCTTTA‑‑‑‑‑‑TCCA‑‑‑Cttccactcagaccagagtcagtgccagttcctgcaaggtggaattccgtcacggtaacatgacgctggaaaatcca > 1:1725791‑M1/1‑74 (MQ=255) aaTTATTACCTGTAGAAATAACGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCATCTTTA‑‑‑‑‑‑TCCA‑‑‑Cttccactcagaccagagtcagtgccagttcctgcaaggtggaattccgtcacggtaacatgacgctggaaaatccat > 1:881627‑M1/1‑73 (MQ=255) ttattaCCTGTGGAGATAACGCCGGATGAGCCGAAAGAACCAGTGGCTGCTCTTACTCCGTCTTTA‑‑‑‑‑‑TCCA‑‑‑C‑‑‑‑‑C‑‑‑CAGACCACTGTCAGTGCCAGCTCCTGCAAGGTGGAGTTCCGTCACGGTAACATGACGCTGGAAAATCCTTCACCagag < 1:137749/150‑1 (MQ=255) ttattaCCTGTAGAAATAACGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCGTCTTTA‑‑‑‑‑‑TCCA‑‑‑Cttccactcagaccagagtcagtgccagttcctgcaaggtggaattccgtcacggtaacatgacgctggaaaatccatcg < 1:2968040‑M1/150‑80 (MQ=255) tattaCCTGTGGAGATAACGCCGGATGAGCCGAAAGAACCGGTGGCTGCTCTTACTCCGTCTTTA‑‑‑‑‑‑TCCA‑‑‑C‑‑‑‑‑C‑‑‑CAGACTACTGTCAGTGCCAGCTCCTGCAAGGTGGAGTTCCGTCACGGTAACATGACGCTGGAAAATCCTTCACCAGAgc < 1:299863/150‑1 (MQ=255) attaCCTGTGGAGATAACGCCGGATGAGCCGAAAGAACCGGTGGCTGCTCTTACTCCGTCTTTA‑‑‑‑‑‑TCCA‑‑‑C‑‑‑‑‑C‑‑‑CAGACTACTGTCAGTGCCAGCTCCTGCAAGGTGGAGTTCCGTCACGGTAACATGACGCTGGAAAATCCTTCa > 1:752680/1‑142 (MQ=255) attaCCTGTGGAGATAACGCCGGATGAGCCGAAAGAACCGGTGGCTGCTCTTACTCCGTCTTTA‑‑‑‑‑‑TCCA‑‑‑C‑‑‑‑‑C‑‑‑CAGACTACTGTCAGTGCCAGCTCCTGCAAGGTGGAGTTCCGTCACGGTAACATGACGCTGGAAAATCCTTCACCAGAgct > 1:3780569/1‑150 (MQ=255) attaCCTGTAGAAATAACGCCGGATGAGCAGAAAGAACCTGTGGCGGCAATTGCGCCATCTTTA‑‑‑‑‑‑TCCA‑‑‑Cttccactcagaccagagtcagtgccagttcctgcaaggtggaattccgtcacggtaacatgacgctggaaaatccatcgcc > 1:3628133‑M1/1‑69 (MQ=255) taCCTGTAGAAATAACGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCATCTTTA‑‑‑‑‑‑TCCA‑‑‑Cttccactcagaccagagtcagtgccagttcctgcaaggtggaattccgtcacggtaacatgacgctggaaaatccatcgccag < 1:2237387‑M1/150‑84 (MQ=255) taCCTGTAGAAATAACGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCATCTCTA‑‑‑‑‑‑TCCA‑‑‑Cttccactcagaccagagtcagtgccagttcctgcaaggtggaattccgtcacggtaacatgacgctggaaaatccatcgccag < 1:2789638‑M1/150‑84 (MQ=255) aCCTGTAGAAATAACGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCATCTTTA‑‑‑‑‑‑TCCA‑‑‑Cttccactcagaccagagtcagtgccagttcctgcaaggtggaattccgtcacggtaacatgacgctggaaaatccatcgccaga < 1:347551‑M1/150‑85 (MQ=255) ctgtagaaataacgccgGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCATCTTTA‑‑‑‑‑‑TCCA‑‑‑Cttctactcagaccagagtcagtgccagttcctgcaaggtggaattccgtcacggtaacatgacgctggaaaatccatcgccagagc < 1:63085‑M1/142‑87 (MQ=255) ctgtagaaataacgccgGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCATCTTTA‑‑‑‑‑‑TCCA‑‑‑Cttccactcagaccagagtcagtgccagttcctgcaaggtggaattccgtcacggtaacatgacgctggaaaatccatcgccagagc > 1:2206419‑M1/9‑64 (MQ=255) aatAACGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCATCTTTA‑‑‑‑‑‑TCCA‑‑‑Cttccactcagaccagagtcagtgccagttcctgcaaggtggaattccgtcacggtaacatgacgctggaaaatccatcgccagagctgctcac < 1:1768144‑M1/149‑94 (MQ=255) aaCGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCATCTTTA‑‑‑‑‑‑TCCA‑‑‑Cttccactcagaccagagtcagtgccagttcctgcaaggtggaattccgtcacggtaacatgacgctggaaaatccatcgccagagctgctcacggt < 1:2810335‑M1/150‑97 (MQ=255) aCGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCATCTTTA‑‑‑‑‑‑TCCA‑‑‑Cttccactcagaccagagtcagtgccagttcctgcaaggtggaattccgtcacggtaacatgacgctggaaaatccatcgccagagctgctcacggtg < 1:1190975‑M1/150‑98 (MQ=255) cGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCGTCTTTA‑‑‑‑‑‑TCCA‑‑‑Cttccactcagaccagagtcagtgccagttcctgcaaggtggaattccgtcacggtaacatgacgctggaaaatccatcgccagagctgctcacgatgt > 1:2126657‑M1/1‑52 (MQ=255) cGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCATCTTTA‑‑‑‑‑‑TCCA‑‑‑Cttccactcagaccagagtcagtgccagttcctgcaaggtggaattccgtcacggtaacatgacgctggaaaatccatcgccagagctgctcacggtgt > 1:3156724‑M1/1‑52 (MQ=255) gCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCATCTTTA‑‑‑‑‑‑TCCA‑‑‑Cttccactcagaccagagtcagtgccagttcctgcaaggtgggattccgtcacggtaacatgacgctggaaaatccatcgccagagctgctcacggtgtt < 1:1140636‑M1/150‑100 (MQ=255) gCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCATCTTTA‑‑‑‑‑‑TCCA‑‑‑Cttccactcagaccagagtcagtgccagttcctgcaaggtggaattccgtcacggtaacgtgacgctggaaaatccatcgccagagctgctcacggtgtt < 1:578842‑M1/150‑100 (MQ=255) gCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCATCTTTA‑‑‑‑‑‑TCCA‑‑‑Cttccactcagaccagagtcagtgccagttcctgcaaggtggaattccgtcacggtaacatgacgctggaaaatccatcgccagagctgctcatggtgtt < 1:541349‑M1/150‑100 (MQ=255) gCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCATCTTTA‑‑‑‑‑‑TCCA‑‑‑Cttccactcagaccagagtcagtgccagttcctgcaaggtggaattccgtcacggtaacatgacgctggaaaatccatcgccagagctgctcacggtgtt > 1:393059‑M1/1‑51 (MQ=255) gCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCATCTTTA‑‑‑‑‑‑TCCA‑‑‑Cttccactcagaccagagtcagtgccagttcctgcaaggtggaattccgtcacggtaacatgacgctggaaaatccatcgccagagctgctcacggtgtt < 1:2349009‑M1/150‑100 (MQ=255) cGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCATCTTTA‑‑‑‑‑‑TCCA‑‑‑Cttccactcagaccagagtcagtgccagttcctgcaaggtggaattccgtcacggtaacatgacgctggaaaatccatcgccagagctgctcacggtgttga > 1:587969‑M1/1‑49 (MQ=255) tGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCATCTTTA‑‑‑‑‑‑TCCA‑‑‑Cttccactcagaccagagtcagtgccagttcctgcaaggtggaattccgtcacggtaacatgacgctggaaaatccatcgccagagctgctcacggtgttgatccg < 1:2534868‑M1/150‑106 (MQ=255) agcagaaagAACCTGTGGCGGCCATTGCGCCGTCTTTA‑‑‑‑‑‑TCCA‑‑‑Cttccactcagaccagggtcagtgccagttcctgcaaggtggaattccgtcacggtaacatgacgctggaaaatccatcgccagagctgctcacgatgttaatccgcg < 1:435236‑M1/146‑108 (MQ=255) agcagaaagAACCTGTGGCGGCCATTGCGCCGTCTTTA‑‑‑‑‑‑TCCA‑‑‑Cttccactcagaccagagtcagtgccagttcctgcaaggtggaattccgtcacggtaacatgacgctggaaaatccatcgccagagctgctcacggtgttgatccgtg < 1:970217‑M1/146‑108 (MQ=255) gcagaaaGAACCTGTGGCGGCCATTGCGCCGTCTTTA‑‑‑‑‑‑TCCA‑‑‑Cttccactcagaccagagtcagtgccagttcctgcaaggtggaattccgtcacggtaacatgacgctggaaaatccatcgccagagctgctcacgatgttaatccgcga > 1:2514303‑M1/4‑42 (MQ=255) gCCGAAAGAACCGGTGGCTGCTCTTACTCCGTCTTTA‑‑‑‑‑‑TCCA‑‑‑C‑‑‑‑‑C‑‑‑CAGACTACTGTCAGTGCCAGCTCCTGCAAGGTGGAGTTCCGTCACGGTAACATGACGCTGGAAAATCCTTCACCAAAGCTGCTCACGGTGTTGATc > 1:2682090/1‑139 (MQ=255) cagaaAGAACCTGTGGCGGCCATTGCGCCGTCTTTA‑‑‑‑‑‑TCCA‑‑‑Cttccactcagaccagagtcagtgccagttcctgcaaggtggaattccgtcacggtaacatgacgctggaaaatccatcgccagagctgctcacggtgttgatccgtgaa > 1:3531111‑M1/3‑41 (MQ=255) gAAAGAACCTGTGGCTGCCATTGCGCCATCTTTA‑‑‑‑‑‑TCCA‑‑‑Cttccactcagaccagagtcagtgccagttcctgcaaggtggaattccgtcacggtaacatgacgctggaa < 1:2705807‑M1/109‑71 (MQ=255) aaaGAACCGGTGGCTGCTCTTACTCCGTCTTTA‑‑‑‑‑‑TCCA‑‑‑C‑‑‑‑‑C‑‑‑CAGACTACTGTCAGTGCCAGCTCCTGCAAGGTGGAGTTCCGTCACGGTAACATGACGCTGGAAAATCCTTCACCAGAGCTGCTCACGGTGTTGATCCGCGAACTGAGTggg < 1:1753923/150‑1 (MQ=255) tGGCTGCTCTTACTCCGTCTTTA‑‑‑‑‑‑TCCA‑‑‑C‑‑‑‑‑C‑‑‑CAGACTACTGTCAGTGCCAGCTCCTGCAAGGTGGAGTTCCGTCACGGTAACATGACGCTGGAAAATCCTTCACCAGAGCTGCTCACGGTGTTGATCCGCGAACTGAGTGGGAGGGGAAgat < 1:2395166/150‑1 (MQ=255) gctCTTACTCCGTCTTTA‑‑‑‑‑‑TCCA‑‑‑C‑‑‑‑‑C‑‑‑CAGACTACTGTCAGTGCCAGCTCCTGCAAGGTGGAGTTCCGTCACGGTAACATGACGCTGGAAAATCCTTCACCAGAGCTGCTCACGGTGTTGATCCGCGAACTGAGTGGGAGGGGAAGATGAttt > 1:3649636/1‑150 (MQ=255) | CAATGATAATGTTATTTTCAAATGGCTCAGACTTTGGCAAAACGAAGGGCGTATATCGCGGCGTCTTTCGGTAACAACCTCTTCTGACACTGGCGTTGAATTATTACCTGTGGAGATAACGCCGGATGAGCCGAAAGAACCGGTGGCTGCTCTTACTCCGTCTTTA‑‑‑‑‑‑TCCA‑‑‑C‑‑‑‑‑C‑‑‑CAGACTACTGTCAGTGCCAGCTCCTGCAAGGTGGAGTTCCGTCACGGTAACATGACGCTGGAAAATCCTTCACCAGAGCTGCTCACGGTGTTGATCCGCGAACTGAGTGGGAGGGGAAGATGATTTC > Xen14_126/1912‑2210 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |