#=GENOME_DIFF	1.0
#=CREATED	21:51:19 30 Oct 2024
#=PROGRAM	breseq 0.38.1 
#=COMMAND	breseq -j 32 -r /scratch/hb-JMvDijl/2024_10_Germany-NL-UMCG/assembly/prokka/Xen14.gff /scratch/hb-JMvDijl/2024_10_Germany-NL-UMCG/fastq/Unknown_CH607-002R0002_good_1.fq.gz -o /scratch/hb-JMvDijl/2024_10_Germany-NL-UMCG/breseq/Xen14_23A/
#=REFSEQ	/scratch/hb-JMvDijl/2024_10_Germany-NL-UMCG/assembly/prokka/Xen14.gff
#=READSEQ	/scratch/hb-JMvDijl/2024_10_Germany-NL-UMCG/fastq/Unknown_CH607-002R0002_good_1.fq.gz
#=CONVERTED-BASES	572159134
#=CONVERTED-READS	3838090
#=INPUT-BASES	572162858
#=INPUT-READS	3838115
#=MAPPED-BASES	550503889
#=MAPPED-READS	3696143
INS	1	98	Xen14_106	3879	T	repeat_length=1	repeat_new_copies=11	repeat_ref_copies=10	repeat_seq=T
SNP	2	144	Xen14_126	1873	T
SNP	3	145	Xen14_126	1876	A
SNP	4	146	Xen14_126	1885	T
SNP	5	147	Xen14_126	1888	A
SNP	6	148	Xen14_126	1897	A
SNP	7	150	Xen14_126	1942	G
SNP	8	151	Xen14_126	1945	C
SNP	9	152	Xen14_126	1951	G
SNP	10	153	Xen14_126	1964	G
SNP	11	154	Xen14_126	1966	T
SNP	12	155	Xen14_126	1979	C
SNP	13	157	Xen14_126	2023	A
SNP	14	158	Xen14_126	2026	A
SNP	15	159	Xen14_126	2043	A
SNP	16	160	Xen14_126	2053	T
INS	17	883	Xen14_143	77	GCTCTGC
SNP	18	255	Xen14_143	136	A
SNP	19	262	Xen14_143	594	T
SNP	20	263	Xen14_143	630	C
SNP	21	264	Xen14_143	651	G
SNP	22	265	Xen14_143	654	C
SNP	23	266	Xen14_143	696	A
SNP	24	267	Xen14_143	700	G
SNP	25	268	Xen14_143	726	A
SNP	26	269	Xen14_143	742	G
SNP	27	270	Xen14_143	753	T
SUB	28	271,272	Xen14_143	782	2	GT
SNP	29	273	Xen14_143	785	A
SNP	30	274	Xen14_143	793	G
SNP	31	275	Xen14_143	807	T
SNP	32	276	Xen14_143	839	T
SNP	33	277	Xen14_143	858	A
SNP	34	278	Xen14_143	879	G
SNP	35	279	Xen14_143	915	T
SNP	36	280	Xen14_143	960	C
SNP	37	281	Xen14_143	967	T
SNP	38	282	Xen14_143	996	A
SNP	39	283	Xen14_143	1030	C
SNP	40	325	Xen14_17	79736	C
SNP	41	326	Xen14_17	79802	G
SNP	42	327	Xen14_17	80371	A
DEL	43	347	Xen14_19	57809	1
SUB	44	350,351	Xen14_191	220	2	GA
SUB	45	352,353	Xen14_191	226	2	GA
SNP	46	354	Xen14_191	229	T
SNP	47	355	Xen14_191	251	G
SNP	48	356	Xen14_191	268	G
SNP	49	357	Xen14_191	275	G
SNP	50	358	Xen14_191	292	C
SNP	51	359	Xen14_191	310	A
SNP	52	360	Xen14_191	334	A
SNP	53	361	Xen14_191	358	A
SNP	54	362	Xen14_191	370	C
SNP	55	368	Xen14_202	78	G
SNP	56	369	Xen14_202	105	A
SNP	57	370	Xen14_202	109	T
SNP	58	371	Xen14_202	126	G
SNP	59	372	Xen14_202	134	T
SNP	60	373	Xen14_202	140	A
SNP	61	374	Xen14_202	191	T
SNP	62	375	Xen14_202	244	T
SUB	63	376,377	Xen14_202	259	2	GG
SUB	64	378,379	Xen14_202	266	2	TC
SNP	65	380	Xen14_202	294	A
SNP	66	381	Xen14_202	314	A
SNP	67	382	Xen14_202	320	G
SNP	68	383	Xen14_202	323	A
SNP	69	384	Xen14_202	332	T
SNP	70	385	Xen14_202	335	A
SNP	71	386	Xen14_202	341	G
SNP	72	387	Xen14_202	344	C
INS	73	414	Xen14_29	61551	T
SNP	74	446	Xen14_38	48371	T
RA	75	.	Xen14_1	121795	0	A	G	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=79.6	fisher_strand_p_value=1	frequency=2.414e-01	ks_quality_p_value=1	major_base=A	major_cov=27/17	major_frequency=7.586e-01	minor_base=G	minor_cov=8/6	new_cov=8/6	polymorphism_frequency=2.414e-01	polymorphism_score=22.7	prediction=polymorphism	ref_cov=27/17	total_cov=37/23
RA	76	.	Xen14_1	170922	0	A	G	bias_e_value=491.745	bias_p_value=9.90715e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=162.5	fisher_strand_p_value=7.76028e-06	frequency=2.157e-01	ks_quality_p_value=1	major_base=A	major_cov=41/39	major_frequency=7.843e-01	minor_base=G	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.157e-01	polymorphism_score=37.2	prediction=polymorphism	ref_cov=41/39	total_cov=63/39
RA	77	.	Xen14_10	78	0	G	T	bias_e_value=3026380	bias_p_value=0.609723	consensus_reject=FREQUENCY_CUTOFF	consensus_score=154.9	fisher_strand_p_value=0.259617	frequency=5.576e-01	ks_quality_p_value=1	major_base=T	major_cov=126/179	major_frequency=5.576e-01	minor_base=G	minor_cov=112/130	new_cov=126/179	polymorphism_frequency=5.576e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=112/130	total_cov=239/310
RA	78	.	Xen14_10	132	0	T	G	bias_e_value=4955170	bias_p_value=0.998315	consensus_reject=FREQUENCY_CUTOFF	consensus_score=981.7	fisher_strand_p_value=0.942514	frequency=6.537e-01	ks_quality_p_value=1	major_base=G	major_cov=259/296	major_frequency=6.537e-01	minor_base=T	minor_cov=138/156	new_cov=259/296	polymorphism_frequency=6.537e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=138/156	total_cov=399/453
RA	79	.	Xen14_10	205	0	G	A	bias_e_value=3613900	bias_p_value=0.728089	consensus_reject=FREQUENCY_CUTOFF	consensus_score=70.4	fisher_strand_p_value=0.486615	frequency=4.825e-01	ks_quality_p_value=0.740397	major_base=G	major_cov=211/217	major_frequency=5.175e-01	minor_base=A	minor_cov=207/192	new_cov=207/192	polymorphism_frequency=4.825e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=211/217	total_cov=419/409
RA	80	.	Xen14_10	249	0	A	G	bias_e_value=4350460	bias_p_value=0.876484	consensus_reject=FREQUENCY_CUTOFF	consensus_score=828.6	fisher_strand_p_value=0.546393	frequency=3.205e-01	ks_quality_p_value=0.99952	major_base=A	major_cov=289/260	major_frequency=6.795e-01	minor_base=G	minor_cov=130/129	new_cov=130/129	polymorphism_frequency=3.205e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=289/260	total_cov=419/390
RA	81	.	Xen14_10	252	0	G	A	bias_e_value=3817620	bias_p_value=0.769134	consensus_reject=FREQUENCY_CUTOFF	consensus_score=812.9	fisher_strand_p_value=0.402868	frequency=3.266e-01	ks_quality_p_value=1	major_base=G	major_cov=280/250	major_frequency=6.734e-01	minor_base=A	minor_cov=127/130	new_cov=127/130	polymorphism_frequency=3.266e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=280/250	total_cov=408/380
RA	82	.	Xen14_10	263	0	C	T	bias_e_value=4879430	bias_p_value=0.983056	consensus_reject=FREQUENCY_CUTOFF	consensus_score=750.8	fisher_strand_p_value=0.823147	frequency=3.387e-01	ks_quality_p_value=0.998182	major_base=C	major_cov=268/261	major_frequency=6.613e-01	minor_base=T	minor_cov=135/136	new_cov=135/136	polymorphism_frequency=3.387e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=268/261	total_cov=403/398
RA	83	.	Xen14_10	266	0	T	C	bias_e_value=4545650	bias_p_value=0.915808	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.0	fisher_strand_p_value=0.623173	frequency=5.055e-01	ks_quality_p_value=0.992987	major_base=C	major_cov=203/207	major_frequency=5.055e-01	minor_base=T	minor_cov=206/195	new_cov=203/207	polymorphism_frequency=5.055e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=206/195	total_cov=410/402
RA	84	.	Xen14_10	394	0	T	C	bias_e_value=3753000	bias_p_value=0.756113	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1311.8	fisher_strand_p_value=0.39493	frequency=2.748e-01	ks_quality_p_value=0.984526	major_base=T	major_cov=371/352	major_frequency=7.252e-01	minor_base=C	minor_cov=132/142	new_cov=132/142	polymorphism_frequency=2.748e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=371/352	total_cov=503/495
RA	85	.	Xen14_10	472	0	G	A	bias_e_value=4765340	bias_p_value=0.960069	consensus_reject=FREQUENCY_CUTOFF	consensus_score=152.1	fisher_strand_p_value=0.731051	frequency=4.652e-01	ks_quality_p_value=1	major_base=G	major_cov=135/157	major_frequency=5.348e-01	minor_base=A	minor_cov=122/132	new_cov=122/132	polymorphism_frequency=4.652e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=135/157	total_cov=258/289
RA	86	.	Xen14_10	510	0	G	C	bias_e_value=465297	bias_p_value=0.093743	consensus_reject=FREQUENCY_CUTOFF	consensus_score=834.6	fisher_strand_p_value=0.0214445	frequency=3.035e-01	ks_quality_p_value=0.879425	major_base=G	major_cov=182/176	major_frequency=6.965e-01	minor_base=C	minor_cov=62/94	new_cov=62/94	polymorphism_frequency=3.035e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=182/176	total_cov=244/270
RA	87	.	Xen14_10	512	0	G	T	bias_e_value=663368	bias_p_value=0.133648	consensus_reject=FREQUENCY_CUTOFF	consensus_score=775.2	fisher_strand_p_value=0.0345398	frequency=3.072e-01	ks_quality_p_value=0.855804	major_base=G	major_cov=179/175	major_frequency=6.928e-01	minor_base=T	minor_cov=63/94	new_cov=63/94	polymorphism_frequency=3.072e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=179/175	total_cov=242/269
RA	88	.	Xen14_10	559	1	.	T	bias_e_value=234898	bias_p_value=0.0473248	consensus_reject=FREQUENCY_CUTOFF	consensus_score=642.4	fisher_strand_p_value=0.0120089	frequency=3.680e-01	ks_quality_p_value=0.678237	major_base=.	major_cov=151/141	major_frequency=6.320e-01	minor_base=T	minor_cov=67/103	new_cov=67/103	polymorphism_frequency=3.680e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=151/141	total_cov=218/244
RA	89	.	Xen14_10	560	0	A	G	bias_e_value=895730	bias_p_value=0.180462	consensus_reject=FREQUENCY_CUTOFF	consensus_score=360.8	fisher_strand_p_value=0.0440087	frequency=3.780e-01	ks_quality_p_value=0.992719	major_base=A	major_cov=145/143	major_frequency=6.220e-01	minor_base=G	minor_cov=71/104	new_cov=71/104	polymorphism_frequency=3.780e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=145/143	total_cov=224/247
RA	90	.	Xen14_10	571	0	C	T	bias_e_value=2368890	bias_p_value=0.477258	consensus_reject=FREQUENCY_CUTOFF	consensus_score=527.2	fisher_strand_p_value=0.17342	frequency=3.025e-01	ks_quality_p_value=1	major_base=C	major_cov=152/150	major_frequency=6.975e-01	minor_base=T	minor_cov=56/75	new_cov=56/75	polymorphism_frequency=3.025e-01	polymorphism_score=253.9	prediction=polymorphism	ref_cov=152/150	total_cov=208/225
RA	91	.	Xen14_10	572	0	C	T	bias_e_value=2349790	bias_p_value=0.473411	consensus_reject=FREQUENCY_CUTOFF	consensus_score=534.7	fisher_strand_p_value=0.17157	frequency=2.986e-01	ks_quality_p_value=0.998031	major_base=C	major_cov=152/151	major_frequency=7.014e-01	minor_base=T	minor_cov=55/74	new_cov=55/74	polymorphism_frequency=2.986e-01	polymorphism_score=258.0	prediction=polymorphism	ref_cov=152/151	total_cov=208/225
RA	92	.	Xen14_10	574	0	G	A	bias_e_value=1317580	bias_p_value=0.265451	consensus_reject=FREQUENCY_CUTOFF	consensus_score=541.4	fisher_strand_p_value=0.0739156	frequency=2.972e-01	ks_quality_p_value=0.994799	major_base=G	major_cov=155/150	major_frequency=7.028e-01	minor_base=A	minor_cov=53/76	new_cov=53/76	polymorphism_frequency=2.972e-01	polymorphism_score=255.9	prediction=polymorphism	ref_cov=155/150	total_cov=208/226
RA	93	.	Xen14_10	575	0	A	G	bias_e_value=2070990	bias_p_value=0.417241	consensus_reject=FREQUENCY_CUTOFF	consensus_score=525.6	fisher_strand_p_value=0.141011	frequency=2.993e-01	ks_quality_p_value=1	major_base=A	major_cov=153/149	major_frequency=7.007e-01	minor_base=G	minor_cov=55/74	new_cov=55/74	polymorphism_frequency=2.993e-01	polymorphism_score=263.8	prediction=polymorphism	ref_cov=153/149	total_cov=209/224
RA	94	.	Xen14_10	610	0	C	T	bias_e_value=2056250	bias_p_value=0.414271	consensus_reject=FREQUENCY_CUTOFF	consensus_score=20.1	fisher_strand_p_value=0.139501	frequency=5.222e-01	ks_quality_p_value=0.999989	major_base=T	major_cov=85/103	major_frequency=5.222e-01	minor_base=C	minor_cov=92/80	new_cov=85/103	polymorphism_frequency=5.222e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=92/80	total_cov=179/183
RA	95	.	Xen14_10	77335	0	T	G	bias_e_value=1.47754e-06	bias_p_value=2.97678e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=230.1	fisher_strand_p_value=8.92594e-15	frequency=2.586e-01	ks_quality_p_value=1	major_base=T	major_cov=66/20	major_frequency=7.414e-01	minor_base=G	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=2.586e-01	polymorphism_score=13.3	prediction=polymorphism	ref_cov=66/20	total_cov=66/51
RA	96	.	Xen14_104	5019	0	G	A	bias_e_value=754816	bias_p_value=0.152072	consensus_reject=FREQUENCY_CUTOFF	consensus_score=89.8	fisher_strand_p_value=0.143296	frequency=3.366e-01	ks_quality_p_value=0.243705	major_base=G	major_cov=25/42	major_frequency=6.634e-01	minor_base=A	minor_cov=18/16	new_cov=18/16	polymorphism_frequency=3.366e-01	polymorphism_score=65.2	prediction=polymorphism	ref_cov=25/42	total_cov=43/58
RA	97	.	Xen14_106	1574	0	A	C	bias_e_value=998140	bias_p_value=0.201094	consensus_reject=FREQUENCY_CUTOFF	consensus_score=293.4	fisher_strand_p_value=0.139657	frequency=2.000e-01	ks_quality_p_value=0.361151	major_base=A	major_cov=59/53	major_frequency=8.000e-01	minor_base=C	minor_cov=10/18	new_cov=10/18	polymorphism_frequency=2.000e-01	polymorphism_score=72.5	prediction=polymorphism	ref_cov=59/53	total_cov=69/71
RA	98	.	Xen14_106	3879	1	.	T	bias_e_value=1829510	bias_p_value=0.36859	consensus_score=187.9	fisher_strand_p_value=0.580362	frequency=1	ks_quality_p_value=0.202046	major_base=T	major_cov=38/29	major_frequency=9.571e-01	minor_base=.	minor_cov=1/2	new_cov=38/29	polymorphism_frequency=9.571e-01	polymorphism_score=2.3	prediction=consensus	ref_cov=1/2	total_cov=39/31
RA	99	.	Xen14_106	4197	0	C	G	bias_e_value=4009.52	bias_p_value=0.000807795	consensus_reject=FREQUENCY_CUTOFF	consensus_score=110.1	fisher_strand_p_value=7.71556e-05	frequency=2.097e-01	ks_quality_p_value=1	major_base=C	major_cov=20/29	major_frequency=7.903e-01	minor_base=G	minor_cov=13/0	new_cov=13/0	polymorphism_frequency=2.097e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=20/29	total_cov=40/29
RA	100	.	Xen14_106	4198	0	C	G	bias_e_value=340.661	bias_p_value=6.86328e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=87.3	fisher_strand_p_value=5.21357e-06	frequency=2.456e-01	ks_quality_p_value=1	major_base=C	major_cov=14/29	major_frequency=7.544e-01	minor_base=G	minor_cov=14/0	new_cov=14/0	polymorphism_frequency=2.456e-01	polymorphism_score=12.8	prediction=polymorphism	ref_cov=14/29	total_cov=40/29
RA	101	.	Xen14_106	4199	0	A	G	bias_e_value=1464.35	bias_p_value=0.000295022	consensus_reject=FREQUENCY_CUTOFF	consensus_score=93.3	fisher_strand_p_value=2.54823e-05	frequency=2.464e-01	ks_quality_p_value=1	major_base=A	major_cov=23/29	major_frequency=7.536e-01	minor_base=G	minor_cov=17/0	new_cov=17/0	polymorphism_frequency=2.464e-01	polymorphism_score=16.6	prediction=polymorphism	ref_cov=23/29	total_cov=40/29
RA	102	.	Xen14_106	4200	0	C	G	bias_e_value=8.31201	bias_p_value=1.67461e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=101.4	fisher_strand_p_value=9.7694e-08	frequency=3.231e-01	ks_quality_p_value=1	major_base=C	major_cov=15/29	major_frequency=6.769e-01	minor_base=G	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=3.231e-01	polymorphism_score=31.6	prediction=polymorphism	ref_cov=15/29	total_cov=40/29
RA	103	.	Xen14_106	4201	0	C	G	bias_e_value=40.3148	bias_p_value=8.1222e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=108.2	fisher_strand_p_value=5.25399e-07	frequency=2.931e-01	ks_quality_p_value=1	major_base=C	major_cov=12/29	major_frequency=7.069e-01	minor_base=G	minor_cov=17/0	new_cov=17/0	polymorphism_frequency=2.931e-01	polymorphism_score=23.0	prediction=polymorphism	ref_cov=12/29	total_cov=40/29
RA	104	.	Xen14_108	127	0	T	C	bias_e_value=3876710	bias_p_value=0.781038	consensus_reject=FREQUENCY_CUTOFF	consensus_score=170.4	fisher_strand_p_value=0.416202	frequency=2.881e-01	ks_quality_p_value=1	major_base=T	major_cov=47/37	major_frequency=7.119e-01	minor_base=C	minor_cov=22/12	new_cov=22/12	polymorphism_frequency=2.881e-01	polymorphism_score=64.3	prediction=polymorphism	ref_cov=47/37	total_cov=69/49
RA	105	.	Xen14_112	3753	0	G	C	bias_e_value=1490400	bias_p_value=0.300269	consensus_reject=FREQUENCY_CUTOFF	consensus_score=173.9	fisher_strand_p_value=1	frequency=2.381e-01	ks_quality_p_value=0.0873396	major_base=G	major_cov=23/41	major_frequency=7.619e-01	minor_base=C	minor_cov=7/13	new_cov=7/13	polymorphism_frequency=2.381e-01	polymorphism_score=55.4	prediction=polymorphism	ref_cov=23/41	total_cov=30/54
RA	106	.	Xen14_112	3820	0	A	G	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=126.4	fisher_strand_p_value=1	frequency=2.558e-01	ks_quality_p_value=1	major_base=A	major_cov=20/44	major_frequency=7.442e-01	minor_base=G	minor_cov=7/15	new_cov=7/15	polymorphism_frequency=2.558e-01	polymorphism_score=38.1	prediction=polymorphism	ref_cov=20/44	total_cov=27/59
RA	107	.	Xen14_112	4026	0	A	G	bias_e_value=2763720	bias_p_value=0.556804	consensus_reject=FREQUENCY_CUTOFF	consensus_score=144.2	fisher_strand_p_value=0.22245	frequency=2.556e-01	ks_quality_p_value=1	major_base=A	major_cov=35/32	major_frequency=7.444e-01	minor_base=G	minor_cov=16/7	new_cov=16/7	polymorphism_frequency=2.556e-01	polymorphism_score=37.5	prediction=polymorphism	ref_cov=35/32	total_cov=51/39
RA	108	.	Xen14_112	4036	0	A	G	bias_e_value=1583230	bias_p_value=0.318971	consensus_reject=FREQUENCY_CUTOFF	consensus_score=128.7	fisher_strand_p_value=0.0951499	frequency=2.809e-01	ks_quality_p_value=1	major_base=A	major_cov=32/32	major_frequency=7.191e-01	minor_base=G	minor_cov=18/7	new_cov=18/7	polymorphism_frequency=2.809e-01	polymorphism_score=44.5	prediction=polymorphism	ref_cov=32/32	total_cov=50/39
RA	109	.	Xen14_112	4044	0	A	C	bias_e_value=1885530	bias_p_value=0.379877	consensus_reject=FREQUENCY_CUTOFF	consensus_score=160.1	fisher_strand_p_value=0.242252	frequency=2.955e-01	ks_quality_p_value=0.506008	major_base=A	major_cov=34/28	major_frequency=7.045e-01	minor_base=C	minor_cov=18/8	new_cov=18/8	polymorphism_frequency=2.955e-01	polymorphism_score=70.9	prediction=polymorphism	ref_cov=34/28	total_cov=52/36
RA	110	.	Xen14_112	4051	0	A	G	bias_e_value=1698180	bias_p_value=0.34213	consensus_reject=FREQUENCY_CUTOFF	consensus_score=122.8	fisher_strand_p_value=0.242775	frequency=2.889e-01	ks_quality_p_value=0.433379	major_base=A	major_cov=35/29	major_frequency=7.111e-01	minor_base=G	minor_cov=18/8	new_cov=18/8	polymorphism_frequency=2.889e-01	polymorphism_score=47.5	prediction=polymorphism	ref_cov=35/29	total_cov=53/37
RA	111	.	Xen14_112	4065	0	A	G	bias_e_value=4224310	bias_p_value=0.851069	consensus_reject=FREQUENCY_CUTOFF	consensus_score=112.9	fisher_strand_p_value=0.506547	frequency=3.229e-01	ks_quality_p_value=1	major_base=A	major_cov=39/26	major_frequency=6.771e-01	minor_base=G	minor_cov=21/10	new_cov=21/10	polymorphism_frequency=3.229e-01	polymorphism_score=60.3	prediction=polymorphism	ref_cov=39/26	total_cov=60/36
RA	112	.	Xen14_112	4183	0	G	A	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=76.8	fisher_strand_p_value=1	frequency=3.627e-01	ks_quality_p_value=1	major_base=G	major_cov=34/31	major_frequency=6.373e-01	minor_base=A	minor_cov=19/18	new_cov=19/18	polymorphism_frequency=3.627e-01	polymorphism_score=73.9	prediction=polymorphism	ref_cov=34/31	total_cov=53/49
RA	113	.	Xen14_112	4409	0	A	G	bias_e_value=4099610	bias_p_value=0.825945	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=5.1	fisher_strand_p_value=1	frequency=4.811e-01	ks_quality_p_value=0.471439	major_base=A	major_cov=33/22	major_frequency=5.189e-01	minor_base=G	minor_cov=30/21	new_cov=30/21	polymorphism_frequency=4.811e-01	polymorphism_score=114.0	prediction=polymorphism	ref_cov=33/22	total_cov=63/43
RA	114	.	Xen14_117	1411	0	C	G	bias_e_value=104.68	bias_p_value=2.10898e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=91.7	fisher_strand_p_value=1.46087e-06	frequency=2.909e-01	ks_quality_p_value=1	major_base=C	major_cov=12/27	major_frequency=7.091e-01	minor_base=G	minor_cov=16/0	new_cov=16/0	polymorphism_frequency=2.909e-01	polymorphism_score=18.8	prediction=polymorphism	ref_cov=12/27	total_cov=29/27
RA	115	.	Xen14_125	78	0	T	C	bias_e_value=95169.1	bias_p_value=0.0191736	consensus_reject=FREQUENCY_CUTOFF	consensus_score=11.5	fisher_strand_p_value=0.193268	frequency=5.581e-01	ks_quality_p_value=0.0144127	major_base=C	major_cov=17/31	major_frequency=5.581e-01	minor_base=T	minor_cov=19/19	new_cov=17/31	polymorphism_frequency=5.581e-01	polymorphism_score=81.2	prediction=polymorphism	ref_cov=19/19	total_cov=36/50
RA	116	.	Xen14_125	402	0	G	A	bias_e_value=2313620	bias_p_value=0.466123	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=2.2	fisher_strand_p_value=1	frequency=4.876e-01	ks_quality_p_value=0.16713	major_base=G	major_cov=37/25	major_frequency=5.124e-01	minor_base=A	minor_cov=36/23	new_cov=36/23	polymorphism_frequency=4.876e-01	polymorphism_score=130.6	prediction=polymorphism	ref_cov=37/25	total_cov=73/48
RA	117	.	Xen14_125	612	0	C	T	bias_e_value=4123880	bias_p_value=0.830834	consensus_reject=FREQUENCY_CUTOFF	consensus_score=54.3	fisher_strand_p_value=0.478001	frequency=5.746e-01	ks_quality_p_value=1	major_base=T	major_cov=43/34	major_frequency=5.746e-01	minor_base=C	minor_cov=36/21	new_cov=43/34	polymorphism_frequency=5.746e-01	polymorphism_score=119.9	prediction=polymorphism	ref_cov=36/21	total_cov=79/55
RA	118	.	Xen14_125	628	0	G	A	bias_e_value=4746130	bias_p_value=0.956199	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=6.8	fisher_strand_p_value=0.719016	frequency=5.194e-01	ks_quality_p_value=1	major_base=A	major_cov=41/26	major_frequency=5.194e-01	minor_base=G	minor_cov=40/22	new_cov=41/26	polymorphism_frequency=5.194e-01	polymorphism_score=137.4	prediction=polymorphism	ref_cov=40/22	total_cov=81/48
RA	119	.	Xen14_125	874	0	C	A	bias_e_value=3671390	bias_p_value=0.739671	consensus_reject=FREQUENCY_CUTOFF	consensus_score=38.6	fisher_strand_p_value=0.613895	frequency=4.648e-01	ks_quality_p_value=0.605662	major_base=C	major_cov=40/36	major_frequency=5.352e-01	minor_base=A	minor_cov=31/35	new_cov=31/35	polymorphism_frequency=4.648e-01	polymorphism_score=193.5	prediction=polymorphism	ref_cov=40/36	total_cov=71/71
RA	120	.	Xen14_125	930	0	T	.	bias_e_value=4493120	bias_p_value=0.905226	consensus_reject=FREQUENCY_CUTOFF	consensus_score=209.9	fisher_strand_p_value=0.597525	frequency=4.806e-01	ks_quality_p_value=1	major_base=T	major_cov=40/27	major_frequency=5.194e-01	minor_base=.	minor_cov=34/28	new_cov=34/28	polymorphism_frequency=4.806e-01	polymorphism_score=226.9	prediction=polymorphism	ref_cov=40/27	total_cov=75/55
RA	121	.	Xen14_125	968	0	C	T	bias_e_value=2252510	bias_p_value=0.453812	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-3.4	fisher_strand_p_value=0.358136	frequency=4.917e-01	ks_quality_p_value=0.447672	major_base=C	major_cov=37/24	major_frequency=5.083e-01	minor_base=T	minor_cov=30/29	new_cov=30/29	polymorphism_frequency=4.917e-01	polymorphism_score=129.5	prediction=polymorphism	ref_cov=37/24	total_cov=67/54
RA	122	.	Xen14_125	1120	0	C	T	bias_e_value=4589580	bias_p_value=0.924659	consensus_reject=FREQUENCY_CUTOFF	consensus_score=31.3	fisher_strand_p_value=0.637847	frequency=4.189e-01	ks_quality_p_value=1	major_base=C	major_cov=20/23	major_frequency=5.811e-01	minor_base=T	minor_cov=17/14	new_cov=17/14	polymorphism_frequency=4.189e-01	polymorphism_score=61.9	prediction=polymorphism	ref_cov=20/23	total_cov=37/37
RA	123	.	Xen14_125	1428	0	A	G	bias_e_value=2303020	bias_p_value=0.463987	consensus_reject=FREQUENCY_CUTOFF	consensus_score=36.2	fisher_strand_p_value=0.165938	frequency=4.436e-01	ks_quality_p_value=1	major_base=A	major_cov=38/36	major_frequency=5.564e-01	minor_base=G	minor_cov=23/36	new_cov=23/36	polymorphism_frequency=4.436e-01	polymorphism_score=129.3	prediction=polymorphism	ref_cov=38/36	total_cov=61/72
RA	124	.	Xen14_125	1485	0	T	A	bias_e_value=2117420	bias_p_value=0.426595	consensus_reject=FREQUENCY_CUTOFF	consensus_score=34.0	fisher_strand_p_value=0.575632	frequency=4.522e-01	ks_quality_p_value=0.253336	major_base=T	major_cov=33/30	major_frequency=5.478e-01	minor_base=A	minor_cov=24/28	new_cov=24/28	polymorphism_frequency=4.522e-01	polymorphism_score=152.5	prediction=polymorphism	ref_cov=33/30	total_cov=57/59
RA	125	.	Xen14_125	1515	0	G	A	bias_e_value=384821	bias_p_value=0.0775296	consensus_reject=FREQUENCY_CUTOFF	consensus_score=12.7	fisher_strand_p_value=0.0148891	frequency=5.304e-01	ks_quality_p_value=1	major_base=A	major_cov=25/36	major_frequency=5.304e-01	minor_base=G	minor_cov=35/19	new_cov=25/36	polymorphism_frequency=5.304e-01	polymorphism_score=119.1	prediction=polymorphism	ref_cov=35/19	total_cov=60/55
RA	126	.	Xen14_125	1698	0	A	T	bias_e_value=1152580	bias_p_value=0.23221	consensus_reject=FREQUENCY_CUTOFF	consensus_score=35.4	fisher_strand_p_value=0.0612146	frequency=5.470e-01	ks_quality_p_value=1	major_base=T	major_cov=41/23	major_frequency=5.470e-01	minor_base=A	minor_cov=24/29	new_cov=41/23	polymorphism_frequency=5.470e-01	polymorphism_score=155.2	prediction=polymorphism	ref_cov=24/29	total_cov=66/52
RA	127	.	Xen14_125	1702	0	T	G	bias_e_value=454945	bias_p_value=0.0916574	consensus_reject=FREQUENCY_CUTOFF	consensus_score=34.7	fisher_strand_p_value=0.0183354	frequency=5.289e-01	ks_quality_p_value=1	major_base=G	major_cov=42/22	major_frequency=5.289e-01	minor_base=T	minor_cov=25/32	new_cov=42/22	polymorphism_frequency=5.289e-01	polymorphism_score=163.2	prediction=polymorphism	ref_cov=25/32	total_cov=67/54
RA	128	.	Xen14_125	1741	0	G	A	bias_e_value=2389670	bias_p_value=0.481444	consensus_reject=FREQUENCY_CUTOFF	consensus_score=55.7	fisher_strand_p_value=0.495181	frequency=5.775e-01	ks_quality_p_value=0.355059	major_base=A	major_cov=50/32	major_frequency=5.775e-01	minor_base=G	minor_cov=33/27	new_cov=50/32	polymorphism_frequency=5.775e-01	polymorphism_score=130.3	prediction=polymorphism	ref_cov=33/27	total_cov=83/59
RA	129	.	Xen14_125	1742	0	A	T	bias_e_value=2389670	bias_p_value=0.481444	consensus_reject=FREQUENCY_CUTOFF	consensus_score=74.7	fisher_strand_p_value=0.495181	frequency=5.775e-01	ks_quality_p_value=0.355059	major_base=T	major_cov=50/32	major_frequency=5.775e-01	minor_base=A	minor_cov=33/27	new_cov=50/32	polymorphism_frequency=5.775e-01	polymorphism_score=174.7	prediction=polymorphism	ref_cov=33/27	total_cov=83/59
RA	130	.	Xen14_125	1790	0	A	G	bias_e_value=4026130	bias_p_value=0.811141	consensus_reject=FREQUENCY_CUTOFF	consensus_score=76.0	fisher_strand_p_value=0.452277	frequency=5.714e-01	ks_quality_p_value=1	major_base=G	major_cov=61/43	major_frequency=5.714e-01	minor_base=A	minor_cov=41/37	new_cov=61/43	polymorphism_frequency=5.714e-01	polymorphism_score=165.5	prediction=polymorphism	ref_cov=41/37	total_cov=102/80
RA	131	.	Xen14_125	1884	0	C	T	bias_e_value=3978850	bias_p_value=0.801617	consensus_reject=FREQUENCY_CUTOFF	consensus_score=43.4	fisher_strand_p_value=0.879185	frequency=4.509e-01	ks_quality_p_value=0.500998	major_base=C	major_cov=46/49	major_frequency=5.491e-01	minor_base=T	minor_cov=39/39	new_cov=39/39	polymorphism_frequency=4.509e-01	polymorphism_score=172.6	prediction=polymorphism	ref_cov=46/49	total_cov=85/88
RA	132	.	Xen14_125	1947	0	T	A	bias_e_value=75767.9	bias_p_value=0.0152649	consensus_reject=FREQUENCY_CUTOFF	consensus_score=139.6	fisher_strand_p_value=0.00886812	frequency=4.000e-01	ks_quality_p_value=0.240771	major_base=T	major_cov=43/77	major_frequency=6.000e-01	minor_base=A	minor_cov=44/36	new_cov=44/36	polymorphism_frequency=4.000e-01	polymorphism_score=232.0	prediction=polymorphism	ref_cov=43/77	total_cov=87/113
RA	133	.	Xen14_125	2035	0	A	C	bias_e_value=20863.8	bias_p_value=0.0042034	consensus_reject=FREQUENCY_CUTOFF	consensus_score=117.9	fisher_strand_p_value=0.000487254	frequency=4.118e-01	ks_quality_p_value=1	major_base=A	major_cov=36/84	major_frequency=5.882e-01	minor_base=C	minor_cov=46/38	new_cov=46/38	polymorphism_frequency=4.118e-01	polymorphism_score=246.6	prediction=polymorphism	ref_cov=36/84	total_cov=82/123
RA	134	.	Xen14_125	2322	0	T	C	bias_e_value=3796190	bias_p_value=0.764815	consensus_reject=FREQUENCY_CUTOFF	consensus_score=17.9	fisher_strand_p_value=0.717784	frequency=3.824e-01	ks_quality_p_value=0.55469	major_base=T	major_cov=9/12	major_frequency=6.176e-01	minor_base=C	minor_cov=4/9	new_cov=4/9	polymorphism_frequency=3.824e-01	polymorphism_score=19.9	prediction=polymorphism	ref_cov=9/12	total_cov=13/21
RA	135	.	Xen14_125	2379	0	T	A	bias_e_value=3323410	bias_p_value=0.669565	consensus_reject=FREQUENCY_CUTOFF	consensus_score=17.3	fisher_strand_p_value=0.307022	frequency=4.054e-01	ks_quality_p_value=1	major_base=T	major_cov=15/7	major_frequency=5.946e-01	minor_base=A	minor_cov=7/8	new_cov=7/8	polymorphism_frequency=4.054e-01	polymorphism_score=39.0	prediction=polymorphism	ref_cov=15/7	total_cov=22/15
RA	136	.	Xen14_125	2442	0	A	G	bias_e_value=2255700	bias_p_value=0.454455	consensus_reject=FREQUENCY_CUTOFF	consensus_score=19.4	fisher_strand_p_value=0.799136	frequency=5.738e-01	ks_quality_p_value=0.201065	major_base=G	major_cov=19/16	major_frequency=5.738e-01	minor_base=A	minor_cov=13/13	new_cov=19/16	polymorphism_frequency=5.738e-01	polymorphism_score=51.1	prediction=polymorphism	ref_cov=13/13	total_cov=32/29
RA	137	.	Xen14_126	1706	0	A	G	bias_e_value=78461.6	bias_p_value=0.0158076	consensus_reject=FREQUENCY_CUTOFF	consensus_score=222.3	fisher_strand_p_value=0.0132571	frequency=2.826e-01	ks_quality_p_value=0.16774	major_base=A	major_cov=81/51	major_frequency=7.174e-01	minor_base=G	minor_cov=21/31	new_cov=21/31	polymorphism_frequency=2.826e-01	polymorphism_score=101.5	prediction=polymorphism	ref_cov=81/51	total_cov=102/82
RA	138	.	Xen14_126	1734	0	T	C	bias_e_value=84695.9	bias_p_value=0.0170636	consensus_reject=FREQUENCY_CUTOFF	consensus_score=385.4	fisher_strand_p_value=0.00243089	frequency=3.713e-01	ks_quality_p_value=1	major_base=T	major_cov=115/100	major_frequency=6.287e-01	minor_base=C	minor_cov=46/81	new_cov=46/81	polymorphism_frequency=3.713e-01	polymorphism_score=271.5	prediction=polymorphism	ref_cov=115/100	total_cov=161/181
RA	139	.	Xen14_126	1739	0	A	G	bias_e_value=33621	bias_p_value=0.00677359	consensus_reject=FREQUENCY_CUTOFF	consensus_score=355.1	fisher_strand_p_value=0.000935517	frequency=4.005e-01	ks_quality_p_value=0.895578	major_base=A	major_cov=120/100	major_frequency=5.995e-01	minor_base=G	minor_cov=54/93	new_cov=54/93	polymorphism_frequency=4.005e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=120/100	total_cov=174/193
RA	140	.	Xen14_126	1768	0	C	T	bias_e_value=1240610	bias_p_value=0.249945	consensus_reject=FREQUENCY_CUTOFF	consensus_score=48.8	fisher_strand_p_value=0.0797657	frequency=5.638e-01	ks_quality_p_value=0.848508	major_base=T	major_cov=133/203	major_frequency=5.638e-01	minor_base=C	minor_cov=122/138	new_cov=133/203	polymorphism_frequency=5.638e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=122/138	total_cov=255/342
RA	141	.	Xen14_126	1770	0	C	T	bias_e_value=1234030	bias_p_value=0.24862	consensus_reject=FREQUENCY_CUTOFF	consensus_score=57.8	fisher_strand_p_value=0.0671904	frequency=5.611e-01	ks_quality_p_value=1	major_base=T	major_cov=132/203	major_frequency=5.611e-01	minor_base=C	minor_cov=123/139	new_cov=132/203	polymorphism_frequency=5.611e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=123/139	total_cov=255/342
RA	142	.	Xen14_126	1825	0	G	C	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1035.1	fisher_strand_p_value=1	frequency=7.159e-01	ks_quality_p_value=1	major_base=C	major_cov=367/384	major_frequency=7.159e-01	minor_base=G	minor_cov=145/153	new_cov=367/384	polymorphism_frequency=7.159e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=145/153	total_cov=513/537
RA	143	.	Xen14_126	1855	0	T	G	bias_e_value=2999830	bias_p_value=0.604374	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1826.9	fisher_strand_p_value=0.255673	frequency=7.620e-01	ks_quality_p_value=1	major_base=G	major_cov=463/475	major_frequency=7.620e-01	minor_base=T	minor_cov=156/137	new_cov=463/475	polymorphism_frequency=7.620e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=156/137	total_cov=621/613
RA	144	.	Xen14_126	1873	0	C	T	bias_e_value=2841200	bias_p_value=0.572414	consensus_score=2710.6	fisher_strand_p_value=0.233117	frequency=1	ks_quality_p_value=0.999495	major_base=T	major_cov=571/588	major_frequency=8.814e-01	minor_base=C	minor_cov=85/71	new_cov=571/588	polymorphism_frequency=8.814e-01	polymorphism_score=248.2	prediction=consensus	ref_cov=85/71	total_cov=656/660
RA	145	.	Xen14_126	1876	0	T	A	bias_e_value=3278310	bias_p_value=0.660479	consensus_score=3162.1	fisher_strand_p_value=0.306893	frequency=1	ks_quality_p_value=0.975612	major_base=A	major_cov=573/588	major_frequency=8.815e-01	minor_base=T	minor_cov=84/72	new_cov=573/588	polymorphism_frequency=8.815e-01	polymorphism_score=inf	prediction=consensus	ref_cov=84/72	total_cov=657/661
RA	146	.	Xen14_126	1885	0	G	T	bias_e_value=4345000	bias_p_value=0.875383	consensus_score=3244.3	fisher_strand_p_value=0.544316	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=567/584	major_frequency=8.847e-01	minor_base=G	minor_cov=78/72	new_cov=567/584	polymorphism_frequency=8.847e-01	polymorphism_score=inf	prediction=consensus	ref_cov=78/72	total_cov=646/656
RA	147	.	Xen14_126	1888	0	C	A	bias_e_value=3751160	bias_p_value=0.755744	consensus_score=3251.9	fisher_strand_p_value=0.388428	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=567/585	major_frequency=8.841e-01	minor_base=C	minor_cov=80/71	new_cov=567/585	polymorphism_frequency=8.841e-01	polymorphism_score=inf	prediction=consensus	ref_cov=80/71	total_cov=649/658
RA	148	.	Xen14_126	1897	0	T	A	bias_e_value=4390100	bias_p_value=0.884471	consensus_score=3392.3	fisher_strand_p_value=0.56041	frequency=1	ks_quality_p_value=0.998567	major_base=A	major_cov=591/610	major_frequency=8.799e-01	minor_base=T	minor_cov=85/79	new_cov=591/610	polymorphism_frequency=8.799e-01	polymorphism_score=inf	prediction=consensus	ref_cov=85/79	total_cov=677/690
RA	149	.	Xen14_126	1900	0	A	T	bias_e_value=4963430	bias_p_value=0.999978	consensus_reject=FREQUENCY_CUTOFF	consensus_score=2641.8	fisher_strand_p_value=1	frequency=7.851e-01	ks_quality_p_value=0.993418	major_base=T	major_cov=526/537	major_frequency=7.851e-01	minor_base=A	minor_cov=144/147	new_cov=526/537	polymorphism_frequency=7.851e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=144/147	total_cov=671/685
RA	150	.	Xen14_126	1942	0	A	G	bias_e_value=4963540	bias_p_value=1	consensus_score=2966.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=557/614	major_frequency=8.772e-01	minor_base=A	minor_cov=78/86	new_cov=557/614	polymorphism_frequency=8.772e-01	polymorphism_score=256.5	prediction=consensus	ref_cov=78/86	total_cov=635/702
RA	151	.	Xen14_126	1945	0	T	C	bias_e_value=4917710	bias_p_value=0.990766	consensus_score=2995.6	fisher_strand_p_value=0.867218	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=558/618	major_frequency=8.789e-01	minor_base=T	minor_cov=78/84	new_cov=558/618	polymorphism_frequency=8.789e-01	polymorphism_score=251.1	prediction=consensus	ref_cov=78/84	total_cov=636/702
RA	152	.	Xen14_126	1951	0	A	G	bias_e_value=4405690	bias_p_value=0.887611	consensus_score=2989.1	fisher_strand_p_value=0.565062	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=551/629	major_frequency=8.747e-01	minor_base=A	minor_cov=83/86	new_cov=551/629	polymorphism_frequency=8.747e-01	polymorphism_score=265.7	prediction=consensus	ref_cov=83/86	total_cov=635/715
RA	153	.	Xen14_126	1964	0	A	G	bias_e_value=4951680	bias_p_value=0.99761	consensus_score=2589.8	fisher_strand_p_value=0.931708	frequency=1	ks_quality_p_value=0.999953	major_base=G	major_cov=462/576	major_frequency=8.679e-01	minor_base=A	minor_cov=71/87	new_cov=462/576	polymorphism_frequency=8.679e-01	polymorphism_score=255.2	prediction=consensus	ref_cov=71/87	total_cov=533/663
RA	154	.	Xen14_126	1966	0	A	T	bias_e_value=4951680	bias_p_value=0.997612	consensus_score=3014.5	fisher_strand_p_value=0.931687	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=461/575	major_frequency=8.677e-01	minor_base=A	minor_cov=71/87	new_cov=461/575	polymorphism_frequency=8.677e-01	polymorphism_score=inf	prediction=consensus	ref_cov=71/87	total_cov=533/663
RA	155	.	Xen14_126	1979	0	T	C	bias_e_value=4352270	bias_p_value=0.876849	consensus_score=2398.6	fisher_strand_p_value=0.546735	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=423/549	major_frequency=8.594e-01	minor_base=T	minor_cov=65/94	new_cov=423/549	polymorphism_frequency=8.594e-01	polymorphism_score=259.7	prediction=consensus	ref_cov=65/94	total_cov=488/643
RA	156	.	Xen14_126	1987	0	A	G	bias_e_value=4891930	bias_p_value=0.985573	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1547.4	fisher_strand_p_value=0.835015	frequency=7.382e-01	ks_quality_p_value=1	major_base=G	major_cov=340/472	major_frequency=7.382e-01	minor_base=A	minor_cov=123/165	new_cov=340/472	polymorphism_frequency=7.382e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=123/165	total_cov=463/637
RA	157	.	Xen14_126	2023	0	G	A	bias_e_value=399261	bias_p_value=0.0804387	consensus_score=1839.1	fisher_strand_p_value=0.0155844	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=395/412	major_frequency=8.218e-01	minor_base=G	minor_cov=68/107	new_cov=395/412	polymorphism_frequency=8.218e-01	polymorphism_score=305.9	prediction=consensus	ref_cov=68/107	total_cov=464/519
RA	158	.	Xen14_126	2026	0	G	A	bias_e_value=280353	bias_p_value=0.0564825	consensus_score=1817.2	fisher_strand_p_value=0.0105614	frequency=1	ks_quality_p_value=0.95571	major_base=A	major_cov=394/414	major_frequency=8.170e-01	minor_base=G	minor_cov=69/112	new_cov=394/414	polymorphism_frequency=8.170e-01	polymorphism_score=inf	prediction=consensus	ref_cov=69/112	total_cov=464/527
RA	159	.	Xen14_126	2043	0	C	A	bias_e_value=578810	bias_p_value=0.116612	consensus_score=2194.1	fisher_strand_p_value=0.0248349	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=381/402	major_frequency=8.139e-01	minor_base=C	minor_cov=70/109	new_cov=381/402	polymorphism_frequency=8.139e-01	polymorphism_score=inf	prediction=consensus	ref_cov=70/109	total_cov=451/513
RA	160	.	Xen14_126	2053	0	G	T	bias_e_value=50448.6	bias_p_value=0.0101638	consensus_score=2010.0	fisher_strand_p_value=0.0013339	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=358/374	major_frequency=8.062e-01	minor_base=G	minor_cov=62/114	new_cov=358/374	polymorphism_frequency=8.062e-01	polymorphism_score=inf	prediction=consensus	ref_cov=62/114	total_cov=422/489
RA	161	.	Xen14_126	2059	0	T	G	bias_e_value=4420.33	bias_p_value=0.00089056	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1680.5	fisher_strand_p_value=8.59466e-05	frequency=7.809e-01	ks_quality_p_value=1	major_base=G	major_cov=311/295	major_frequency=7.809e-01	minor_base=T	minor_cov=58/112	new_cov=311/295	polymorphism_frequency=7.809e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=58/112	total_cov=371/408
RA	162	.	Xen14_126	2062	0	T	C	bias_e_value=14208.2	bias_p_value=0.00286252	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1286.6	fisher_strand_p_value=0.000327088	frequency=7.848e-01	ks_quality_p_value=0.965962	major_base=C	major_cov=311/298	major_frequency=7.848e-01	minor_base=T	minor_cov=59/108	new_cov=311/298	polymorphism_frequency=7.848e-01	polymorphism_score=308.0	prediction=polymorphism	ref_cov=59/108	total_cov=371/407
RA	163	.	Xen14_126	2063	0	C	A	bias_e_value=12612.6	bias_p_value=0.00254105	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1560.5	fisher_strand_p_value=0.00027639	frequency=7.785e-01	ks_quality_p_value=1	major_base=A	major_cov=311/297	major_frequency=7.785e-01	minor_base=C	minor_cov=61/112	new_cov=311/297	polymorphism_frequency=7.785e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=61/112	total_cov=372/410
RA	164	.	Xen14_126	2066	0	A	G	bias_e_value=14215.8	bias_p_value=0.00286404	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1281.9	fisher_strand_p_value=0.000316143	frequency=7.751e-01	ks_quality_p_value=1	major_base=G	major_cov=312/298	major_frequency=7.751e-01	minor_base=A	minor_cov=63/114	new_cov=312/298	polymorphism_frequency=7.751e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=63/114	total_cov=375/412
RA	165	.	Xen14_126	2068	0	T	G	bias_e_value=94293.5	bias_p_value=0.0189972	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1675.6	fisher_strand_p_value=0.00275557	frequency=7.745e-01	ks_quality_p_value=1	major_base=G	major_cov=312/296	major_frequency=7.745e-01	minor_base=T	minor_cov=68/109	new_cov=312/296	polymorphism_frequency=7.745e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=68/109	total_cov=380/407
RA	166	.	Xen14_126	2071	0	G	A	bias_e_value=1659840	bias_p_value=0.334406	consensus_reject=FREQUENCY_CUTOFF	consensus_score=169.2	fisher_strand_p_value=0.101808	frequency=5.346e-01	ks_quality_p_value=1	major_base=A	major_cov=216/209	major_frequency=5.346e-01	minor_base=G	minor_cov=166/204	new_cov=216/209	polymorphism_frequency=5.346e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=166/204	total_cov=382/413
RA	167	.	Xen14_131	849	0	C	G	bias_e_value=4894960	bias_p_value=0.986184	consensus_reject=FREQUENCY_CUTOFF	consensus_score=53.5	fisher_strand_p_value=0.838446	frequency=5.758e-01	ks_quality_p_value=1	major_base=G	major_cov=25/32	major_frequency=5.758e-01	minor_base=C	minor_cov=20/22	new_cov=25/32	polymorphism_frequency=5.758e-01	polymorphism_score=133.9	prediction=polymorphism	ref_cov=20/22	total_cov=45/54
RA	168	.	Xen14_131	852	0	T	C	bias_e_value=3433940	bias_p_value=0.691833	consensus_reject=FREQUENCY_CUTOFF	consensus_score=34.1	fisher_strand_p_value=0.68735	frequency=5.700e-01	ks_quality_p_value=0.474848	major_base=C	major_cov=25/32	major_frequency=5.700e-01	minor_base=T	minor_cov=21/22	new_cov=25/32	polymorphism_frequency=5.700e-01	polymorphism_score=91.2	prediction=polymorphism	ref_cov=21/22	total_cov=46/54
RA	169	.	Xen14_131	870	0	G	A	bias_e_value=3186300	bias_p_value=0.641942	consensus_reject=FREQUENCY_CUTOFF	consensus_score=30.1	fisher_strand_p_value=0.65563	frequency=4.337e-01	ks_quality_p_value=0.433714	major_base=G	major_cov=19/28	major_frequency=5.663e-01	minor_base=A	minor_cov=17/19	new_cov=17/19	polymorphism_frequency=4.337e-01	polymorphism_score=74.4	prediction=polymorphism	ref_cov=19/28	total_cov=36/47
RA	170	.	Xen14_131	871	0	C	T	bias_e_value=4196630	bias_p_value=0.845493	consensus_reject=FREQUENCY_CUTOFF	consensus_score=15.3	fisher_strand_p_value=1	frequency=4.819e-01	ks_quality_p_value=0.498444	major_base=C	major_cov=19/24	major_frequency=5.181e-01	minor_base=T	minor_cov=17/23	new_cov=17/23	polymorphism_frequency=4.819e-01	polymorphism_score=84.3	prediction=polymorphism	ref_cov=19/24	total_cov=36/47
RA	171	.	Xen14_131	905	0	C	A	bias_e_value=4897640	bias_p_value=0.986723	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-2.5	fisher_strand_p_value=0.841533	frequency=5.600e-01	ks_quality_p_value=1	major_base=A	major_cov=27/29	major_frequency=5.600e-01	minor_base=C	minor_cov=20/24	new_cov=27/29	polymorphism_frequency=5.600e-01	polymorphism_score=131.0	prediction=polymorphism	ref_cov=20/24	total_cov=47/53
RA	172	.	Xen14_131	908	0	G	A	bias_e_value=4895710	bias_p_value=0.986335	consensus_reject=FREQUENCY_CUTOFF	consensus_score=19.9	fisher_strand_p_value=0.839304	frequency=5.816e-01	ks_quality_p_value=1	major_base=A	major_cov=28/29	major_frequency=5.816e-01	minor_base=G	minor_cov=19/22	new_cov=28/29	polymorphism_frequency=5.816e-01	polymorphism_score=81.2	prediction=polymorphism	ref_cov=19/22	total_cov=47/51
RA	173	.	Xen14_131	936	0	C	T	bias_e_value=4900420	bias_p_value=0.987285	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-6.0	fisher_strand_p_value=0.844827	frequency=5.524e-01	ks_quality_p_value=1	major_base=T	major_cov=29/29	major_frequency=5.524e-01	minor_base=C	minor_cov=22/25	new_cov=29/29	polymorphism_frequency=5.524e-01	polymorphism_score=102.5	prediction=polymorphism	ref_cov=22/25	total_cov=51/54
RA	174	.	Xen14_131	993	0	C	T	bias_e_value=3083600	bias_p_value=0.62125	consensus_reject=FREQUENCY_CUTOFF	consensus_score=110.3	fisher_strand_p_value=0.823313	frequency=3.258e-01	ks_quality_p_value=0.325843	major_base=C	major_cov=29/31	major_frequency=6.742e-01	minor_base=T	minor_cov=15/14	new_cov=15/14	polymorphism_frequency=3.258e-01	polymorphism_score=55.9	prediction=polymorphism	ref_cov=29/31	total_cov=44/45
RA	175	.	Xen14_131	1267	0	T	C	bias_e_value=2880570	bias_p_value=0.580346	consensus_reject=FREQUENCY_CUTOFF	consensus_score=133.3	fisher_strand_p_value=0.238488	frequency=2.000e-01	ks_quality_p_value=1	major_base=T	major_cov=31/25	major_frequency=8.000e-01	minor_base=C	minor_cov=5/9	new_cov=5/9	polymorphism_frequency=2.000e-01	polymorphism_score=20.9	prediction=polymorphism	ref_cov=31/25	total_cov=36/34
RA	176	.	Xen14_131	1292	0	A	G	bias_e_value=4350300	bias_p_value=0.876451	consensus_reject=FREQUENCY_CUTOFF	consensus_score=92.6	fisher_strand_p_value=1	frequency=3.239e-01	ks_quality_p_value=0.546076	major_base=A	major_cov=26/22	major_frequency=6.761e-01	minor_base=G	minor_cov=12/11	new_cov=12/11	polymorphism_frequency=3.239e-01	polymorphism_score=43.1	prediction=polymorphism	ref_cov=26/22	total_cov=38/33
RA	177	.	Xen14_131	1298	0	A	G	bias_e_value=4125170	bias_p_value=0.831095	consensus_reject=FREQUENCY_CUTOFF	consensus_score=91.9	fisher_strand_p_value=0.478355	frequency=3.467e-01	ks_quality_p_value=1	major_base=A	major_cov=27/22	major_frequency=6.533e-01	minor_base=G	minor_cov=12/14	new_cov=12/14	polymorphism_frequency=3.467e-01	polymorphism_score=49.1	prediction=polymorphism	ref_cov=27/22	total_cov=39/36
RA	178	.	Xen14_131	1352	0	G	A	bias_e_value=4295990	bias_p_value=0.86551	consensus_reject=FREQUENCY_CUTOFF	consensus_score=68.0	fisher_strand_p_value=0.528467	frequency=7.311e-01	ks_quality_p_value=1	major_base=A	major_cov=32/55	major_frequency=7.311e-01	minor_base=G	minor_cov=14/18	new_cov=32/55	polymorphism_frequency=7.311e-01	polymorphism_score=59.1	prediction=polymorphism	ref_cov=14/18	total_cov=46/73
RA	179	.	Xen14_131	1358	0	C	T	bias_e_value=4318520	bias_p_value=0.870048	consensus_reject=FREQUENCY_CUTOFF	consensus_score=78.5	fisher_strand_p_value=0.535659	frequency=7.360e-01	ks_quality_p_value=1	major_base=T	major_cov=35/57	major_frequency=7.360e-01	minor_base=C	minor_cov=15/18	new_cov=35/57	polymorphism_frequency=7.360e-01	polymorphism_score=57.8	prediction=polymorphism	ref_cov=15/18	total_cov=50/75
RA	180	.	Xen14_131	1376	0	A	G	bias_e_value=3576970	bias_p_value=0.72065	consensus_reject=FREQUENCY_CUTOFF	consensus_score=44.5	fisher_strand_p_value=0.734691	frequency=6.626e-01	ks_quality_p_value=0.480573	major_base=G	major_cov=41/67	major_frequency=6.626e-01	minor_base=A	minor_cov=23/32	new_cov=41/67	polymorphism_frequency=6.626e-01	polymorphism_score=110.5	prediction=polymorphism	ref_cov=23/32	total_cov=64/99
RA	181	.	Xen14_131	1401	0	A	C	bias_e_value=3393470	bias_p_value=0.683679	consensus_reject=FREQUENCY_CUTOFF	consensus_score=65.5	fisher_strand_p_value=0.319176	frequency=6.919e-01	ks_quality_p_value=1	major_base=C	major_cov=48/71	major_frequency=6.919e-01	minor_base=A	minor_cov=26/27	new_cov=48/71	polymorphism_frequency=6.919e-01	polymorphism_score=141.7	prediction=polymorphism	ref_cov=26/27	total_cov=74/98
RA	182	.	Xen14_131	1414	0	A	C	bias_e_value=1548250	bias_p_value=0.311924	consensus_reject=FREQUENCY_CUTOFF	consensus_score=67.6	fisher_strand_p_value=0.092174	frequency=6.826e-01	ks_quality_p_value=1	major_base=C	major_cov=43/71	major_frequency=6.826e-01	minor_base=A	minor_cov=28/25	new_cov=43/71	polymorphism_frequency=6.826e-01	polymorphism_score=139.0	prediction=polymorphism	ref_cov=28/25	total_cov=71/96
RA	183	.	Xen14_131	1429	0	G	A	bias_e_value=164995	bias_p_value=0.0332414	consensus_reject=FREQUENCY_CUTOFF	consensus_score=85.9	fisher_strand_p_value=0.0134821	frequency=6.743e-01	ks_quality_p_value=0.395509	major_base=A	major_cov=40/78	major_frequency=6.743e-01	minor_base=G	minor_cov=31/26	new_cov=40/78	polymorphism_frequency=6.743e-01	polymorphism_score=116.1	prediction=polymorphism	ref_cov=31/26	total_cov=71/104
RA	184	.	Xen14_131	1505	0	C	T	bias_e_value=1608470	bias_p_value=0.324058	consensus_reject=FREQUENCY_CUTOFF	consensus_score=45.4	fisher_strand_p_value=0.0973228	frequency=4.354e-01	ks_quality_p_value=1	major_base=C	major_cov=36/47	major_frequency=5.646e-01	minor_base=T	minor_cov=37/27	new_cov=37/27	polymorphism_frequency=4.354e-01	polymorphism_score=135.8	prediction=polymorphism	ref_cov=36/47	total_cov=73/74
RA	185	.	Xen14_131	1684	1	.	T	bias_e_value=452819	bias_p_value=0.0912291	consensus_reject=FREQUENCY_CUTOFF	consensus_score=224.5	fisher_strand_p_value=0.0182284	frequency=5.758e-01	ks_quality_p_value=1	major_base=T	major_cov=22/54	major_frequency=5.758e-01	minor_base=.	minor_cov=28/28	new_cov=22/54	polymorphism_frequency=5.758e-01	polymorphism_score=202.2	prediction=polymorphism	ref_cov=28/28	total_cov=50/82
RA	186	.	Xen14_131	1794	0	C	T	bias_e_value=3060200	bias_p_value=0.616536	consensus_reject=FREQUENCY_CUTOFF	consensus_score=107.6	fisher_strand_p_value=1	frequency=2.647e-01	ks_quality_p_value=0.264706	major_base=C	major_cov=27/23	major_frequency=7.353e-01	minor_base=T	minor_cov=10/8	new_cov=10/8	polymorphism_frequency=2.647e-01	polymorphism_score=30.8	prediction=polymorphism	ref_cov=27/23	total_cov=37/31
RA	187	.	Xen14_131	1818	0	A	C	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=127.4	fisher_strand_p_value=1	frequency=2.812e-01	ks_quality_p_value=1	major_base=A	major_cov=26/20	major_frequency=7.188e-01	minor_base=C	minor_cov=10/8	new_cov=10/8	polymorphism_frequency=2.812e-01	polymorphism_score=47.5	prediction=polymorphism	ref_cov=26/20	total_cov=36/28
RA	188	.	Xen14_131	1828	0	C	T	bias_e_value=4830200	bias_p_value=0.973136	consensus_reject=FREQUENCY_CUTOFF	consensus_score=67.8	fisher_strand_p_value=0.777347	frequency=3.333e-01	ks_quality_p_value=1	major_base=C	major_cov=18/18	major_frequency=6.667e-01	minor_base=T	minor_cov=10/8	new_cov=10/8	polymorphism_frequency=3.333e-01	polymorphism_score=32.4	prediction=polymorphism	ref_cov=18/18	total_cov=28/26
RA	189	.	Xen14_131	1829	0	T	G	bias_e_value=3023020	bias_p_value=0.609046	consensus_reject=FREQUENCY_CUTOFF	consensus_score=89.9	fisher_strand_p_value=0.777347	frequency=3.333e-01	ks_quality_p_value=0.333333	major_base=T	major_cov=18/18	major_frequency=6.667e-01	minor_base=G	minor_cov=10/8	new_cov=10/8	polymorphism_frequency=3.333e-01	polymorphism_score=49.3	prediction=polymorphism	ref_cov=18/18	total_cov=28/26
RA	190	.	Xen14_131	1842	0	G	A	bias_e_value=3764610	bias_p_value=0.758453	consensus_reject=FREQUENCY_CUTOFF	consensus_score=43.9	fisher_strand_p_value=1	frequency=3.913e-01	ks_quality_p_value=0.391304	major_base=G	major_cov=16/12	major_frequency=6.087e-01	minor_base=A	minor_cov=10/8	new_cov=10/8	polymorphism_frequency=3.913e-01	polymorphism_score=34.4	prediction=polymorphism	ref_cov=16/12	total_cov=26/20
RA	191	.	Xen14_131	1843	0	T	C	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=40.5	fisher_strand_p_value=1	frequency=4.000e-01	ks_quality_p_value=1	major_base=T	major_cov=15/12	major_frequency=6.000e-01	minor_base=C	minor_cov=10/8	new_cov=10/8	polymorphism_frequency=4.000e-01	polymorphism_score=35.0	prediction=polymorphism	ref_cov=15/12	total_cov=25/20
RA	192	.	Xen14_131	1845	0	A	G	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=40.4	fisher_strand_p_value=1	frequency=4.000e-01	ks_quality_p_value=1	major_base=A	major_cov=15/12	major_frequency=6.000e-01	minor_base=G	minor_cov=10/8	new_cov=10/8	polymorphism_frequency=4.000e-01	polymorphism_score=35.1	prediction=polymorphism	ref_cov=15/12	total_cov=25/20
RA	193	.	Xen14_132	890	0	C	T	bias_e_value=2949560	bias_p_value=0.594245	consensus_reject=FREQUENCY_CUTOFF	consensus_score=357.4	fisher_strand_p_value=0.248324	frequency=2.315e-01	ks_quality_p_value=1	major_base=C	major_cov=81/75	major_frequency=7.685e-01	minor_base=T	minor_cov=29/18	new_cov=29/18	polymorphism_frequency=2.315e-01	polymorphism_score=84.1	prediction=polymorphism	ref_cov=81/75	total_cov=110/93
RA	194	.	Xen14_132	970	0	T	C	bias_e_value=48126	bias_p_value=0.00969591	consensus_reject=FREQUENCY_CUTOFF	consensus_score=350.7	fisher_strand_p_value=0.00221578	frequency=3.080e-01	ks_quality_p_value=0.570227	major_base=T	major_cov=82/118	major_frequency=6.920e-01	minor_base=C	minor_cov=54/35	new_cov=54/35	polymorphism_frequency=3.080e-01	polymorphism_score=180.2	prediction=polymorphism	ref_cov=82/118	total_cov=136/153
RA	195	.	Xen14_132	976	0	G	A	bias_e_value=120251	bias_p_value=0.0242269	consensus_reject=FREQUENCY_CUTOFF	consensus_score=373.7	fisher_strand_p_value=0.00368509	frequency=3.095e-01	ks_quality_p_value=0.994799	major_base=G	major_cov=85/118	major_frequency=6.905e-01	minor_base=A	minor_cov=55/36	new_cov=55/36	polymorphism_frequency=3.095e-01	polymorphism_score=181.3	prediction=polymorphism	ref_cov=85/118	total_cov=140/154
RA	196	.	Xen14_132	988	0	G	A	bias_e_value=150165	bias_p_value=0.0302537	consensus_reject=FREQUENCY_CUTOFF	consensus_score=308.5	fisher_strand_p_value=0.0166075	frequency=3.106e-01	ks_quality_p_value=0.287063	major_base=G	major_cov=79/103	major_frequency=6.894e-01	minor_base=A	minor_cov=49/33	new_cov=49/33	polymorphism_frequency=3.106e-01	polymorphism_score=160.5	prediction=polymorphism	ref_cov=79/103	total_cov=128/138
RA	197	.	Xen14_132	995	0	T	C	bias_e_value=397936	bias_p_value=0.0801719	consensus_reject=FREQUENCY_CUTOFF	consensus_score=283.2	fisher_strand_p_value=0.0164431	frequency=3.256e-01	ks_quality_p_value=0.943879	major_base=T	major_cov=71/103	major_frequency=6.744e-01	minor_base=C	minor_cov=48/36	new_cov=48/36	polymorphism_frequency=3.256e-01	polymorphism_score=171.6	prediction=polymorphism	ref_cov=71/103	total_cov=119/139
RA	198	.	Xen14_132	1000	0	A	T	bias_e_value=758012	bias_p_value=0.152716	consensus_reject=FREQUENCY_CUTOFF	consensus_score=383.3	fisher_strand_p_value=0.0440297	frequency=3.230e-01	ks_quality_p_value=0.797506	major_base=A	major_cov=70/104	major_frequency=6.770e-01	minor_base=T	minor_cov=45/38	new_cov=45/38	polymorphism_frequency=3.230e-01	polymorphism_score=231.3	prediction=polymorphism	ref_cov=70/104	total_cov=115/142
RA	199	.	Xen14_132	1030	0	G	A	bias_e_value=1027380	bias_p_value=0.206986	consensus_reject=FREQUENCY_CUTOFF	consensus_score=245.0	fisher_strand_p_value=0.0524224	frequency=3.361e-01	ks_quality_p_value=1	major_base=G	major_cov=58/100	major_frequency=6.639e-01	minor_base=A	minor_cov=40/40	new_cov=40/40	polymorphism_frequency=3.361e-01	polymorphism_score=160.1	prediction=polymorphism	ref_cov=58/100	total_cov=98/140
RA	200	.	Xen14_132	1032	0	T	G	bias_e_value=1896440	bias_p_value=0.382074	consensus_reject=FREQUENCY_CUTOFF	consensus_score=315.7	fisher_strand_p_value=0.12363	frequency=3.405e-01	ks_quality_p_value=1	major_base=T	major_cov=60/93	major_frequency=6.595e-01	minor_base=G	minor_cov=40/39	new_cov=40/39	polymorphism_frequency=3.405e-01	polymorphism_score=206.8	prediction=polymorphism	ref_cov=60/93	total_cov=100/132
RA	201	.	Xen14_132	1093	0	A	C	bias_e_value=2839690	bias_p_value=0.57211	consensus_reject=FREQUENCY_CUTOFF	consensus_score=252.4	fisher_strand_p_value=0.233173	frequency=4.059e-01	ks_quality_p_value=0.998359	major_base=A	major_cov=56/86	major_frequency=5.941e-01	minor_base=C	minor_cov=46/51	new_cov=46/51	polymorphism_frequency=4.059e-01	polymorphism_score=293.4	prediction=polymorphism	ref_cov=56/86	total_cov=102/137
RA	202	.	Xen14_132	1114	0	G	T	bias_e_value=2778360	bias_p_value=0.559753	consensus_reject=FREQUENCY_CUTOFF	consensus_score=222.5	fisher_strand_p_value=0.236353	frequency=4.449e-01	ks_quality_p_value=0.949505	major_base=G	major_cov=52/79	major_frequency=5.551e-01	minor_base=T	minor_cov=50/55	new_cov=50/55	polymorphism_frequency=4.449e-01	polymorphism_score=302.0	prediction=polymorphism	ref_cov=52/79	total_cov=102/134
RA	203	.	Xen14_132	1118	0	T	A	bias_e_value=3831780	bias_p_value=0.771985	consensus_reject=FREQUENCY_CUTOFF	consensus_score=347.1	fisher_strand_p_value=0.406017	frequency=3.210e-01	ks_quality_p_value=1	major_base=T	major_cov=68/97	major_frequency=6.790e-01	minor_base=A	minor_cov=37/41	new_cov=37/41	polymorphism_frequency=3.210e-01	polymorphism_score=216.9	prediction=polymorphism	ref_cov=68/97	total_cov=105/138
RA	204	.	Xen14_132	1210	0	T	A	bias_e_value=4565500	bias_p_value=0.919807	consensus_reject=FREQUENCY_CUTOFF	consensus_score=82.2	fisher_strand_p_value=0.627254	frequency=5.000e-01	ks_quality_p_value=1	major_base=T	major_cov=62/74	major_frequency=5.000e-01	minor_base=A	minor_cov=67/69	new_cov=67/69	polymorphism_frequency=5.000e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=62/74	total_cov=130/143
RA	205	.	Xen14_132	1212	0	A	T	bias_e_value=4565500	bias_p_value=0.919807	consensus_reject=FREQUENCY_CUTOFF	consensus_score=79.8	fisher_strand_p_value=0.627254	frequency=5.018e-01	ks_quality_p_value=1	major_base=T	major_cov=67/69	major_frequency=5.018e-01	minor_base=A	minor_cov=62/73	new_cov=67/69	polymorphism_frequency=5.018e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=62/73	total_cov=131/143
RA	206	.	Xen14_132	1219	0	G	A	bias_e_value=4904180	bias_p_value=0.988041	consensus_reject=FREQUENCY_CUTOFF	consensus_score=44.3	fisher_strand_p_value=0.902295	frequency=4.925e-01	ks_quality_p_value=0.941363	major_base=G	major_cov=63/72	major_frequency=5.075e-01	minor_base=A	minor_cov=63/68	new_cov=63/68	polymorphism_frequency=4.925e-01	polymorphism_score=299.8	prediction=polymorphism	ref_cov=63/72	total_cov=126/140
RA	207	.	Xen14_132	1228	0	A	G	bias_e_value=4723050	bias_p_value=0.951549	consensus_reject=FREQUENCY_CUTOFF	consensus_score=80.9	fisher_strand_p_value=0.711163	frequency=4.598e-01	ks_quality_p_value=0.99178	major_base=A	major_cov=66/75	major_frequency=5.402e-01	minor_base=G	minor_cov=59/61	new_cov=59/61	polymorphism_frequency=4.598e-01	polymorphism_score=268.3	prediction=polymorphism	ref_cov=66/75	total_cov=125/136
RA	208	.	Xen14_132	1234	0	T	C	bias_e_value=4646360	bias_p_value=0.936098	consensus_reject=FREQUENCY_CUTOFF	consensus_score=63.4	fisher_strand_p_value=1	frequency=4.587e-01	ks_quality_p_value=0.664509	major_base=T	major_cov=61/70	major_frequency=5.413e-01	minor_base=C	minor_cov=52/59	new_cov=52/59	polymorphism_frequency=4.587e-01	polymorphism_score=250.2	prediction=polymorphism	ref_cov=61/70	total_cov=113/129
RA	209	.	Xen14_132	1235	0	T	A	bias_e_value=4801450	bias_p_value=0.967344	consensus_reject=FREQUENCY_CUTOFF	consensus_score=118.2	fisher_strand_p_value=0.897536	frequency=4.545e-01	ks_quality_p_value=0.841831	major_base=T	major_cov=61/71	major_frequency=5.455e-01	minor_base=A	minor_cov=52/58	new_cov=52/58	polymorphism_frequency=4.545e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=61/71	total_cov=113/129
RA	210	.	Xen14_132	1311	0	T	C	bias_e_value=2259950	bias_p_value=0.45531	consensus_reject=FREQUENCY_CUTOFF	consensus_score=236.7	fisher_strand_p_value=0.298219	frequency=2.586e-01	ks_quality_p_value=0.540363	major_base=T	major_cov=73/56	major_frequency=7.414e-01	minor_base=C	minor_cov=21/24	new_cov=21/24	polymorphism_frequency=2.586e-01	polymorphism_score=82.6	prediction=polymorphism	ref_cov=73/56	total_cov=94/80
RA	211	.	Xen14_132	1634	0	A	C	bias_e_value=4919200	bias_p_value=0.991066	consensus_reject=FREQUENCY_CUTOFF	consensus_score=388.8	fisher_strand_p_value=0.869344	frequency=2.264e-01	ks_quality_p_value=1	major_base=A	major_cov=76/88	major_frequency=7.736e-01	minor_base=C	minor_cov=21/27	new_cov=21/27	polymorphism_frequency=2.264e-01	polymorphism_score=110.4	prediction=polymorphism	ref_cov=76/88	total_cov=97/115
RA	212	.	Xen14_132	1641	0	T	C	bias_e_value=154393	bias_p_value=0.0311054	consensus_reject=FREQUENCY_CUTOFF	consensus_score=329.2	fisher_strand_p_value=0.0558268	frequency=2.020e-01	ks_quality_p_value=0.0882589	major_base=T	major_cov=83/79	major_frequency=7.980e-01	minor_base=C	minor_cov=14/27	new_cov=14/27	polymorphism_frequency=2.020e-01	polymorphism_score=70.6	prediction=polymorphism	ref_cov=83/79	total_cov=97/106
RA	213	.	Xen14_132	1670	0	T	C	bias_e_value=3787970	bias_p_value=0.763159	consensus_reject=FREQUENCY_CUTOFF	consensus_score=169.9	fisher_strand_p_value=0.5394	frequency=3.871e-01	ks_quality_p_value=0.734806	major_base=T	major_cov=88/83	major_frequency=6.129e-01	minor_base=C	minor_cov=51/57	new_cov=51/57	polymorphism_frequency=3.871e-01	polymorphism_score=232.2	prediction=polymorphism	ref_cov=88/83	total_cov=139/140
RA	214	.	Xen14_132	1719	0	T	C	bias_e_value=4637240	bias_p_value=0.93426	consensus_reject=FREQUENCY_CUTOFF	consensus_score=20.3	fisher_strand_p_value=0.69937	frequency=4.790e-01	ks_quality_p_value=0.943775	major_base=T	major_cov=63/61	major_frequency=5.210e-01	minor_base=C	minor_cov=55/59	new_cov=55/59	polymorphism_frequency=4.790e-01	polymorphism_score=259.2	prediction=polymorphism	ref_cov=63/61	total_cov=118/120
RA	215	.	Xen14_132	1729	0	C	T	bias_e_value=3872610	bias_p_value=0.780213	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.2	fisher_strand_p_value=0.415261	frequency=4.793e-01	ks_quality_p_value=1	major_base=C	major_cov=58/55	major_frequency=5.207e-01	minor_base=T	minor_cov=47/57	new_cov=47/57	polymorphism_frequency=4.793e-01	polymorphism_score=232.3	prediction=polymorphism	ref_cov=58/55	total_cov=105/112
RA	216	.	Xen14_133	96	0	T	G	bias_e_value=3396690	bias_p_value=0.684328	consensus_reject=FREQUENCY_CUTOFF	consensus_score=306.8	fisher_strand_p_value=1	frequency=2.865e-01	ks_quality_p_value=0.319745	major_base=T	major_cov=62/75	major_frequency=7.135e-01	minor_base=G	minor_cov=25/30	new_cov=25/30	polymorphism_frequency=2.865e-01	polymorphism_score=153.0	prediction=polymorphism	ref_cov=62/75	total_cov=87/105
RA	217	.	Xen14_133	98	0	T	C	bias_e_value=4010090	bias_p_value=0.80791	consensus_reject=FREQUENCY_CUTOFF	consensus_score=245.1	fisher_strand_p_value=1	frequency=2.850e-01	ks_quality_p_value=0.448228	major_base=T	major_cov=63/75	major_frequency=7.150e-01	minor_base=C	minor_cov=25/30	new_cov=25/30	polymorphism_frequency=2.850e-01	polymorphism_score=107.4	prediction=polymorphism	ref_cov=63/75	total_cov=88/105
RA	218	.	Xen14_133	108	0	A	G	bias_e_value=4923240	bias_p_value=0.99188	consensus_reject=FREQUENCY_CUTOFF	consensus_score=256.4	fisher_strand_p_value=0.875303	frequency=2.843e-01	ks_quality_p_value=1	major_base=A	major_cov=65/76	major_frequency=7.157e-01	minor_base=G	minor_cov=25/31	new_cov=25/31	polymorphism_frequency=2.843e-01	polymorphism_score=106.9	prediction=polymorphism	ref_cov=65/76	total_cov=91/107
RA	219	.	Xen14_133	111	0	G	A	bias_e_value=3650820	bias_p_value=0.735527	consensus_reject=FREQUENCY_CUTOFF	consensus_score=262.9	fisher_strand_p_value=0.874589	frequency=2.814e-01	ks_quality_p_value=0.420366	major_base=G	major_cov=67/76	major_frequency=7.186e-01	minor_base=A	minor_cov=25/31	new_cov=25/31	polymorphism_frequency=2.814e-01	polymorphism_score=107.2	prediction=polymorphism	ref_cov=67/76	total_cov=92/107
RA	220	.	Xen14_133	116	0	G	T	bias_e_value=4923140	bias_p_value=0.99186	consensus_reject=FREQUENCY_CUTOFF	consensus_score=367.9	fisher_strand_p_value=0.875153	frequency=2.772e-01	ks_quality_p_value=1	major_base=G	major_cov=68/78	major_frequency=7.228e-01	minor_base=T	minor_cov=25/31	new_cov=25/31	polymorphism_frequency=2.772e-01	polymorphism_score=145.6	prediction=polymorphism	ref_cov=68/78	total_cov=93/109
RA	221	.	Xen14_133	117	0	G	A	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=275.9	fisher_strand_p_value=1	frequency=2.723e-01	ks_quality_p_value=1	major_base=G	major_cov=68/79	major_frequency=7.277e-01	minor_base=A	minor_cov=25/30	new_cov=25/30	polymorphism_frequency=2.723e-01	polymorphism_score=103.3	prediction=polymorphism	ref_cov=68/79	total_cov=93/109
RA	222	.	Xen14_133	120	0	G	A	bias_e_value=4600920	bias_p_value=0.926943	consensus_reject=FREQUENCY_CUTOFF	consensus_score=294.4	fisher_strand_p_value=0.642972	frequency=2.679e-01	ks_quality_p_value=1	major_base=G	major_cov=74/79	major_frequency=7.321e-01	minor_base=A	minor_cov=25/31	new_cov=25/31	polymorphism_frequency=2.679e-01	polymorphism_score=104.6	prediction=polymorphism	ref_cov=74/79	total_cov=99/110
RA	223	.	Xen14_133	126	0	G	C	bias_e_value=4370610	bias_p_value=0.880544	consensus_reject=FREQUENCY_CUTOFF	consensus_score=397.4	fisher_strand_p_value=0.552913	frequency=2.896e-01	ks_quality_p_value=1	major_base=G	major_cov=77/80	major_frequency=7.104e-01	minor_base=C	minor_cov=28/36	new_cov=28/36	polymorphism_frequency=2.896e-01	polymorphism_score=191.3	prediction=polymorphism	ref_cov=77/80	total_cov=105/116
RA	224	.	Xen14_133	153	0	T	G	bias_e_value=3686730	bias_p_value=0.742763	consensus_reject=FREQUENCY_CUTOFF	consensus_score=361.9	fisher_strand_p_value=0.374952	frequency=2.788e-01	ks_quality_p_value=1	major_base=T	major_cov=89/74	major_frequency=7.212e-01	minor_base=G	minor_cov=30/33	new_cov=30/33	polymorphism_frequency=2.788e-01	polymorphism_score=170.3	prediction=polymorphism	ref_cov=89/74	total_cov=119/107
RA	225	.	Xen14_133	156	0	A	C	bias_e_value=3245120	bias_p_value=0.653791	consensus_reject=FREQUENCY_CUTOFF	consensus_score=367.3	fisher_strand_p_value=0.299405	frequency=2.751e-01	ks_quality_p_value=0.98163	major_base=A	major_cov=93/73	major_frequency=7.249e-01	minor_base=C	minor_cov=30/33	new_cov=30/33	polymorphism_frequency=2.751e-01	polymorphism_score=177.5	prediction=polymorphism	ref_cov=93/73	total_cov=123/106
RA	226	.	Xen14_133	171	0	C	T	bias_e_value=3260140	bias_p_value=0.656818	consensus_reject=FREQUENCY_CUTOFF	consensus_score=305.7	fisher_strand_p_value=0.305094	frequency=2.735e-01	ks_quality_p_value=0.971456	major_base=C	major_cov=91/79	major_frequency=7.265e-01	minor_base=T	minor_cov=29/35	new_cov=29/35	polymorphism_frequency=2.735e-01	polymorphism_score=122.2	prediction=polymorphism	ref_cov=91/79	total_cov=121/114
RA	227	.	Xen14_133	186	0	A	G	bias_e_value=3775480	bias_p_value=0.760643	consensus_reject=FREQUENCY_CUTOFF	consensus_score=322.9	fisher_strand_p_value=0.393645	frequency=2.731e-01	ks_quality_p_value=1	major_base=A	major_cov=95/86	major_frequency=7.269e-01	minor_base=G	minor_cov=31/37	new_cov=31/37	polymorphism_frequency=2.731e-01	polymorphism_score=130.2	prediction=polymorphism	ref_cov=95/86	total_cov=126/123
RA	228	.	Xen14_133	195	0	G	T	bias_e_value=1485720	bias_p_value=0.299326	consensus_reject=FREQUENCY_CUTOFF	consensus_score=491.6	fisher_strand_p_value=0.0932357	frequency=2.547e-01	ks_quality_p_value=0.932617	major_base=G	major_cov=106/93	major_frequency=7.453e-01	minor_base=T	minor_cov=28/40	new_cov=28/40	polymorphism_frequency=2.547e-01	polymorphism_score=177.8	prediction=polymorphism	ref_cov=106/93	total_cov=134/135
RA	229	.	Xen14_133	198	0	A	G	bias_e_value=2246380	bias_p_value=0.452577	consensus_reject=FREQUENCY_CUTOFF	consensus_score=378.5	fisher_strand_p_value=0.160059	frequency=2.537e-01	ks_quality_p_value=0.997466	major_base=A	major_cov=104/96	major_frequency=7.463e-01	minor_base=G	minor_cov=28/40	new_cov=28/40	polymorphism_frequency=2.537e-01	polymorphism_score=129.9	prediction=polymorphism	ref_cov=104/96	total_cov=133/136
RA	230	.	Xen14_133	1536	0	G	T	bias_e_value=515718	bias_p_value=0.103901	consensus_reject=FREQUENCY_CUTOFF	consensus_score=407.8	fisher_strand_p_value=0.0232121	frequency=2.652e-01	ks_quality_p_value=0.924533	major_base=G	major_cov=90/79	major_frequency=7.348e-01	minor_base=T	minor_cov=43/18	new_cov=43/18	polymorphism_frequency=2.652e-01	polymorphism_score=160.0	prediction=polymorphism	ref_cov=90/79	total_cov=133/97
RA	231	.	Xen14_133	1542	0	A	G	bias_e_value=291365	bias_p_value=0.058701	consensus_reject=FREQUENCY_CUTOFF	consensus_score=308.9	fisher_strand_p_value=0.0112087	frequency=2.692e-01	ks_quality_p_value=0.943804	major_base=A	major_cov=90/81	major_frequency=7.308e-01	minor_base=G	minor_cov=45/18	new_cov=45/18	polymorphism_frequency=2.692e-01	polymorphism_score=121.9	prediction=polymorphism	ref_cov=90/81	total_cov=135/99
RA	232	.	Xen14_133	1564	0	T	C	bias_e_value=232116	bias_p_value=0.0467641	consensus_reject=FREQUENCY_CUTOFF	consensus_score=328.3	fisher_strand_p_value=0.00891831	frequency=2.642e-01	ks_quality_p_value=0.900228	major_base=T	major_cov=84/97	major_frequency=7.358e-01	minor_base=C	minor_cov=43/22	new_cov=43/22	polymorphism_frequency=2.642e-01	polymorphism_score=125.8	prediction=polymorphism	ref_cov=84/97	total_cov=127/119
RA	233	.	Xen14_133	1602	0	A	G	bias_e_value=1282650	bias_p_value=0.258415	consensus_reject=FREQUENCY_CUTOFF	consensus_score=332.3	fisher_strand_p_value=0.0726837	frequency=2.521e-01	ks_quality_p_value=0.974829	major_base=A	major_cov=84/94	major_frequency=7.479e-01	minor_base=G	minor_cov=37/23	new_cov=37/23	polymorphism_frequency=2.521e-01	polymorphism_score=114.6	prediction=polymorphism	ref_cov=84/94	total_cov=122/117
RA	234	.	Xen14_133	1641	0	A	G	bias_e_value=4232920	bias_p_value=0.852803	consensus_reject=FREQUENCY_CUTOFF	consensus_score=186.5	fisher_strand_p_value=0.509106	frequency=3.099e-01	ks_quality_p_value=1	major_base=A	major_cov=57/61	major_frequency=6.901e-01	minor_base=G	minor_cov=29/24	new_cov=29/24	polymorphism_frequency=3.099e-01	polymorphism_score=100.0	prediction=polymorphism	ref_cov=57/61	total_cov=87/85
RA	235	.	Xen14_133	1650	0	G	T	bias_e_value=3765980	bias_p_value=0.758729	consensus_reject=FREQUENCY_CUTOFF	consensus_score=225.8	fisher_strand_p_value=0.391599	frequency=3.161e-01	ks_quality_p_value=1	major_base=G	major_cov=48/58	major_frequency=6.839e-01	minor_base=T	minor_cov=26/23	new_cov=26/23	polymorphism_frequency=3.161e-01	polymorphism_score=126.0	prediction=polymorphism	ref_cov=48/58	total_cov=74/82
RA	236	.	Xen14_134	279	0	T	C	bias_e_value=2191750	bias_p_value=0.441571	consensus_reject=FREQUENCY_CUTOFF	consensus_score=62.9	fisher_strand_p_value=0.74947	frequency=4.241e-01	ks_quality_p_value=0.205099	major_base=T	major_cov=41/50	major_frequency=5.759e-01	minor_base=C	minor_cov=32/35	new_cov=32/35	polymorphism_frequency=4.241e-01	polymorphism_score=145.3	prediction=polymorphism	ref_cov=41/50	total_cov=73/85
RA	237	.	Xen14_134	342	0	A	T	bias_e_value=4921270	bias_p_value=0.991484	consensus_reject=FREQUENCY_CUTOFF	consensus_score=56.7	fisher_strand_p_value=0.872363	frequency=4.479e-01	ks_quality_p_value=1	major_base=A	major_cov=35/55	major_frequency=5.521e-01	minor_base=T	minor_cov=30/43	new_cov=30/43	polymorphism_frequency=4.479e-01	polymorphism_score=214.7	prediction=polymorphism	ref_cov=35/55	total_cov=65/99
RA	238	.	Xen14_134	523	0	G	T	bias_e_value=287810	bias_p_value=0.0579848	consensus_reject=FREQUENCY_CUTOFF	consensus_score=102.9	fisher_strand_p_value=0.473703	frequency=3.923e-01	ks_quality_p_value=0.0220004	major_base=G	major_cov=43/36	major_frequency=6.077e-01	minor_base=T	minor_cov=24/27	new_cov=24/27	polymorphism_frequency=3.923e-01	polymorphism_score=145.3	prediction=polymorphism	ref_cov=43/36	total_cov=67/63
RA	239	.	Xen14_134	572	0	C	A	bias_e_value=1525600	bias_p_value=0.307362	consensus_reject=FREQUENCY_CUTOFF	consensus_score=118.8	fisher_strand_p_value=0.605009	frequency=3.885e-01	ks_quality_p_value=0.149202	major_base=C	major_cov=48/37	major_frequency=6.115e-01	minor_base=A	minor_cov=28/26	new_cov=28/26	polymorphism_frequency=3.885e-01	polymorphism_score=153.8	prediction=polymorphism	ref_cov=48/37	total_cov=76/63
RA	240	.	Xen14_134	648	0	T	C	bias_e_value=4053640	bias_p_value=0.816684	consensus_reject=FREQUENCY_CUTOFF	consensus_score=201.7	fisher_strand_p_value=0.823074	frequency=2.049e-01	ks_quality_p_value=0.558068	major_base=T	major_cov=54/43	major_frequency=7.951e-01	minor_base=C	minor_cov=13/12	new_cov=13/12	polymorphism_frequency=2.049e-01	polymorphism_score=41.4	prediction=polymorphism	ref_cov=54/43	total_cov=67/55
RA	241	.	Xen14_134	828	0	A	G	bias_e_value=514896	bias_p_value=0.103736	consensus_reject=FREQUENCY_CUTOFF	consensus_score=32.8	fisher_strand_p_value=0.566452	frequency=4.483e-01	ks_quality_p_value=0.0378095	major_base=A	major_cov=26/38	major_frequency=5.517e-01	minor_base=G	minor_cov=18/34	new_cov=18/34	polymorphism_frequency=4.483e-01	polymorphism_score=114.3	prediction=polymorphism	ref_cov=26/38	total_cov=44/72
RA	242	.	Xen14_134	839	0	A	G	bias_e_value=3828530	bias_p_value=0.771331	consensus_reject=FREQUENCY_CUTOFF	consensus_score=49.4	fisher_strand_p_value=0.405293	frequency=4.175e-01	ks_quality_p_value=1	major_base=A	major_cov=24/36	major_frequency=5.825e-01	minor_base=G	minor_cov=13/30	new_cov=13/30	polymorphism_frequency=4.175e-01	polymorphism_score=90.4	prediction=polymorphism	ref_cov=24/36	total_cov=37/66
RA	243	.	Xen14_134	1015	0	A	T	bias_e_value=2213680	bias_p_value=0.445989	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.2	fisher_strand_p_value=0.57171	frequency=4.602e-01	ks_quality_p_value=0.273013	major_base=A	major_cov=30/31	major_frequency=5.398e-01	minor_base=T	minor_cov=29/23	new_cov=29/23	polymorphism_frequency=4.602e-01	polymorphism_score=153.1	prediction=polymorphism	ref_cov=30/31	total_cov=60/55
RA	244	.	Xen14_134	1099	0	T	G	bias_e_value=3319610	bias_p_value=0.668799	consensus_reject=FREQUENCY_CUTOFF	consensus_score=134.0	fisher_strand_p_value=0.306374	frequency=2.561e-01	ks_quality_p_value=1	major_base=T	major_cov=38/23	major_frequency=7.439e-01	minor_base=G	minor_cov=10/11	new_cov=10/11	polymorphism_frequency=2.561e-01	polymorphism_score=53.8	prediction=polymorphism	ref_cov=38/23	total_cov=48/34
RA	245	.	Xen14_137	156	0	G	A	bias_e_value=1221470	bias_p_value=0.246089	consensus_reject=FREQUENCY_CUTOFF	consensus_score=363.5	fisher_strand_p_value=0.129094	frequency=2.047e-01	ks_quality_p_value=0.513234	major_base=G	major_cov=93/78	major_frequency=7.953e-01	minor_base=A	minor_cov=18/26	new_cov=18/26	polymorphism_frequency=2.047e-01	polymorphism_score=75.4	prediction=polymorphism	ref_cov=93/78	total_cov=111/104
RA	246	.	Xen14_137	246	0	C	T	bias_e_value=4808070	bias_p_value=0.968679	consensus_reject=FREQUENCY_CUTOFF	consensus_score=335.2	fisher_strand_p_value=0.760389	frequency=2.500e-01	ks_quality_p_value=1	major_base=C	major_cov=83/88	major_frequency=7.500e-01	minor_base=T	minor_cov=26/31	new_cov=26/31	polymorphism_frequency=2.500e-01	polymorphism_score=103.6	prediction=polymorphism	ref_cov=83/88	total_cov=109/119
RA	247	.	Xen14_137	574	0	T	C	bias_e_value=3041.03	bias_p_value=0.000612674	consensus_reject=FREQUENCY_CUTOFF	consensus_score=287.0	fisher_strand_p_value=0.00100448	frequency=2.629e-01	ks_quality_p_value=0.0566076	major_base=T	major_cov=79/78	major_frequency=7.371e-01	minor_base=C	minor_cov=14/42	new_cov=14/42	polymorphism_frequency=2.629e-01	polymorphism_score=108.4	prediction=polymorphism	ref_cov=79/78	total_cov=93/120
RA	248	.	Xen14_137	678	0	T	C	bias_e_value=1087480	bias_p_value=0.219094	consensus_reject=FREQUENCY_CUTOFF	consensus_score=345.9	fisher_strand_p_value=0.114817	frequency=2.311e-01	ks_quality_p_value=0.492817	major_base=T	major_cov=89/84	major_frequency=7.689e-01	minor_base=C	minor_cov=20/32	new_cov=20/32	polymorphism_frequency=2.311e-01	polymorphism_score=94.7	prediction=polymorphism	ref_cov=89/84	total_cov=109/116
RA	249	.	Xen14_137	789	0	A	G	bias_e_value=2399690	bias_p_value=0.483464	consensus_reject=FREQUENCY_CUTOFF	consensus_score=335.9	fisher_strand_p_value=0.515207	frequency=2.304e-01	ks_quality_p_value=0.343517	major_base=A	major_cov=74/93	major_frequency=7.696e-01	minor_base=G	minor_cov=19/31	new_cov=19/31	polymorphism_frequency=2.304e-01	polymorphism_score=91.7	prediction=polymorphism	ref_cov=74/93	total_cov=94/124
RA	250	.	Xen14_137	795	0	A	G	bias_e_value=2027240	bias_p_value=0.408427	consensus_reject=FREQUENCY_CUTOFF	consensus_score=324.7	fisher_strand_p_value=0.516668	frequency=2.361e-01	ks_quality_p_value=0.264287	major_base=A	major_cov=72/93	major_frequency=7.639e-01	minor_base=G	minor_cov=19/32	new_cov=19/32	polymorphism_frequency=2.361e-01	polymorphism_score=93.9	prediction=polymorphism	ref_cov=72/93	total_cov=92/125
RA	251	.	Xen14_137	810	0	G	A	bias_e_value=4542950	bias_p_value=0.915265	consensus_reject=FREQUENCY_CUTOFF	consensus_score=350.7	fisher_strand_p_value=0.617672	frequency=2.160e-01	ks_quality_p_value=1	major_base=G	major_cov=77/90	major_frequency=7.840e-01	minor_base=A	minor_cov=19/27	new_cov=19/27	polymorphism_frequency=2.160e-01	polymorphism_score=80.2	prediction=polymorphism	ref_cov=77/90	total_cov=96/117
RA	252	.	Xen14_137	816	0	A	G	bias_e_value=3872110	bias_p_value=0.780111	consensus_reject=FREQUENCY_CUTOFF	consensus_score=311.7	fisher_strand_p_value=1	frequency=2.205e-01	ks_quality_p_value=0.415145	major_base=A	major_cov=66/86	major_frequency=7.795e-01	minor_base=G	minor_cov=19/24	new_cov=19/24	polymorphism_frequency=2.205e-01	polymorphism_score=76.9	prediction=polymorphism	ref_cov=66/86	total_cov=86/110
RA	253	.	Xen14_137	1449	0	G	C	bias_e_value=2142810	bias_p_value=0.431709	consensus_reject=FREQUENCY_CUTOFF	consensus_score=302.6	fisher_strand_p_value=0.849003	frequency=2.434e-01	ks_quality_p_value=0.174908	major_base=G	major_cov=47/68	major_frequency=7.566e-01	minor_base=C	minor_cov=16/21	new_cov=16/21	polymorphism_frequency=2.434e-01	polymorphism_score=106.9	prediction=polymorphism	ref_cov=47/68	total_cov=63/89
RA	254	.	Xen14_138	1284	0	A	G	bias_e_value=1267340	bias_p_value=0.255331	consensus_reject=FREQUENCY_CUTOFF	consensus_score=180.7	fisher_strand_p_value=0.546786	frequency=6.181e-01	ks_quality_p_value=0.127459	major_base=G	major_cov=94/84	major_frequency=6.181e-01	minor_base=A	minor_cov=54/56	new_cov=94/84	polymorphism_frequency=6.181e-01	polymorphism_score=235.5	prediction=polymorphism	ref_cov=54/56	total_cov=151/140
RA	255	.	Xen14_143	136	0	G	A	bias_e_value=3982480	bias_p_value=0.802346	consensus_score=1517.0	fisher_strand_p_value=0.465234	frequency=1	ks_quality_p_value=0.948685	major_base=A	major_cov=334/339	major_frequency=8.227e-01	minor_base=G	minor_cov=67/78	new_cov=334/339	polymorphism_frequency=8.227e-01	polymorphism_score=255.6	prediction=consensus	ref_cov=67/78	total_cov=401/417
RA	256	.	Xen14_143	155	0	G	A	bias_e_value=3989970	bias_p_value=0.803856	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1134.7	fisher_strand_p_value=0.443217	frequency=7.949e-01	ks_quality_p_value=0.999988	major_base=A	major_cov=262/269	major_frequency=7.949e-01	minor_base=G	minor_cov=62/75	new_cov=262/269	polymorphism_frequency=7.949e-01	polymorphism_score=250.2	prediction=polymorphism	ref_cov=62/75	total_cov=324/344
RA	257	.	Xen14_143	206	0	A	T	bias_e_value=4538670	bias_p_value=0.914401	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=7.5	fisher_strand_p_value=0.615885	frequency=5.257e-01	ks_quality_p_value=1	major_base=T	major_cov=62/71	major_frequency=5.257e-01	minor_base=A	minor_cov=60/60	new_cov=62/71	polymorphism_frequency=5.257e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=60/60	total_cov=122/131
RA	258	.	Xen14_143	216	0	C	T	bias_e_value=2354520	bias_p_value=0.474364	consensus_reject=FREQUENCY_CUTOFF	consensus_score=135.3	fisher_strand_p_value=0.171772	frequency=3.850e-01	ks_quality_p_value=1	major_base=C	major_cov=52/63	major_frequency=6.150e-01	minor_base=T	minor_cov=25/47	new_cov=25/47	polymorphism_frequency=3.850e-01	polymorphism_score=145.9	prediction=polymorphism	ref_cov=52/63	total_cov=78/110
RA	259	.	Xen14_143	480	0	G	C	bias_e_value=4940110	bias_p_value=0.995281	consensus_reject=FREQUENCY_CUTOFF	consensus_score=28.6	fisher_strand_p_value=0.904434	frequency=6.699e-01	ks_quality_p_value=1	major_base=C	major_cov=103/104	major_frequency=6.699e-01	minor_base=G	minor_cov=50/52	new_cov=103/104	polymorphism_frequency=6.699e-01	polymorphism_score=314.1	prediction=polymorphism	ref_cov=50/52	total_cov=153/156
RA	260	.	Xen14_143	498	0	C	T	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=313.7	fisher_strand_p_value=1	frequency=7.362e-01	ks_quality_p_value=1	major_base=T	major_cov=144/149	major_frequency=7.362e-01	minor_base=C	minor_cov=52/53	new_cov=144/149	polymorphism_frequency=7.362e-01	polymorphism_score=199.4	prediction=polymorphism	ref_cov=52/53	total_cov=197/202
RA	261	.	Xen14_143	501	0	C	T	bias_e_value=4880580	bias_p_value=0.983286	consensus_reject=FREQUENCY_CUTOFF	consensus_score=304.6	fisher_strand_p_value=0.822936	frequency=7.320e-01	ks_quality_p_value=0.999869	major_base=T	major_cov=146/149	major_frequency=7.320e-01	minor_base=C	minor_cov=52/56	new_cov=146/149	polymorphism_frequency=7.320e-01	polymorphism_score=209.7	prediction=polymorphism	ref_cov=52/56	total_cov=198/205
RA	262	.	Xen14_143	594	0	C	T	bias_e_value=4834990	bias_p_value=0.974102	consensus_score=2233.4	fisher_strand_p_value=0.782899	frequency=1	ks_quality_p_value=0.997856	major_base=T	major_cov=412/566	major_frequency=8.763e-01	minor_base=C	minor_cov=60/78	new_cov=412/566	polymorphism_frequency=8.763e-01	polymorphism_score=218.7	prediction=consensus	ref_cov=60/78	total_cov=472/644
RA	263	.	Xen14_143	630	0	A	C	bias_e_value=4907850	bias_p_value=0.988781	consensus_score=3065.6	fisher_strand_p_value=0.853993	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=507/554	major_frequency=8.886e-01	minor_base=A	minor_cov=62/71	new_cov=507/554	polymorphism_frequency=8.886e-01	polymorphism_score=297.8	prediction=consensus	ref_cov=62/71	total_cov=570/625
RA	264	.	Xen14_143	651	0	T	G	bias_e_value=4822030	bias_p_value=0.97149	consensus_score=2966.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.770917	major_base=G	major_cov=459/562	major_frequency=8.871e-01	minor_base=T	minor_cov=58/72	new_cov=459/562	polymorphism_frequency=8.871e-01	polymorphism_score=294.7	prediction=consensus	ref_cov=58/72	total_cov=518/635
RA	265	.	Xen14_143	654	0	A	C	bias_e_value=4513740	bias_p_value=0.90938	consensus_score=2936.9	fisher_strand_p_value=0.855374	frequency=1	ks_quality_p_value=0.708111	major_base=C	major_cov=454/564	major_frequency=8.806e-01	minor_base=A	minor_cov=63/75	new_cov=454/564	polymorphism_frequency=8.806e-01	polymorphism_score=304.6	prediction=consensus	ref_cov=63/75	total_cov=517/639
RA	266	.	Xen14_143	696	0	G	A	bias_e_value=4838800	bias_p_value=0.974869	consensus_score=2462.8	fisher_strand_p_value=0.784352	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=500/483	major_frequency=8.785e-01	minor_base=G	minor_cov=71/65	new_cov=500/483	polymorphism_frequency=8.785e-01	polymorphism_score=213.1	prediction=consensus	ref_cov=71/65	total_cov=572/548
RA	267	.	Xen14_143	700	0	C	G	bias_e_value=4963540	bias_p_value=1	consensus_score=2849.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=503/481	major_frequency=8.817e-01	minor_base=C	minor_cov=68/64	new_cov=503/481	polymorphism_frequency=8.817e-01	polymorphism_score=inf	prediction=consensus	ref_cov=68/64	total_cov=572/547
RA	268	.	Xen14_143	726	0	G	A	bias_e_value=1573160	bias_p_value=0.316943	consensus_score=2294.7	fisher_strand_p_value=0.0944065	frequency=1	ks_quality_p_value=0.99876	major_base=A	major_cov=467/445	major_frequency=8.863e-01	minor_base=G	minor_cov=70/47	new_cov=467/445	polymorphism_frequency=8.863e-01	polymorphism_score=179.8	prediction=consensus	ref_cov=70/47	total_cov=537/492
RA	269	.	Xen14_143	742	0	C	G	bias_e_value=3361360	bias_p_value=0.677211	consensus_score=2783.8	fisher_strand_p_value=0.331199	frequency=1	ks_quality_p_value=0.946732	major_base=G	major_cov=485/479	major_frequency=8.901e-01	minor_base=C	minor_cov=66/53	new_cov=485/479	polymorphism_frequency=8.901e-01	polymorphism_score=307.6	prediction=consensus	ref_cov=66/53	total_cov=553/535
RA	270	.	Xen14_143	753	0	C	T	bias_e_value=4881060	bias_p_value=0.983382	consensus_score=2426.1	fisher_strand_p_value=0.923137	frequency=1	ks_quality_p_value=0.891875	major_base=T	major_cov=500/461	major_frequency=8.882e-01	minor_base=C	minor_cov=64/57	new_cov=500/461	polymorphism_frequency=8.882e-01	polymorphism_score=186.7	prediction=consensus	ref_cov=64/57	total_cov=564/522
RA	271	.	Xen14_143	782	0	A	G	bias_e_value=4708880	bias_p_value=0.948694	consensus_score=2161.5	fisher_strand_p_value=0.697273	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=426/433	major_frequency=8.774e-01	minor_base=A	minor_cov=57/63	new_cov=426/433	polymorphism_frequency=8.774e-01	polymorphism_score=185.5	prediction=consensus	ref_cov=57/63	total_cov=483/497
RA	272	.	Xen14_143	783	0	C	T	bias_e_value=4821890	bias_p_value=0.971463	consensus_score=2134.6	fisher_strand_p_value=0.770813	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=425/428	major_frequency=8.767e-01	minor_base=C	minor_cov=58/62	new_cov=425/428	polymorphism_frequency=8.767e-01	polymorphism_score=187.1	prediction=consensus	ref_cov=58/62	total_cov=483/498
RA	273	.	Xen14_143	785	0	T	A	bias_e_value=4963540	bias_p_value=1	consensus_score=2482.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=425/436	major_frequency=8.759e-01	minor_base=T	minor_cov=60/62	new_cov=425/436	polymorphism_frequency=8.759e-01	polymorphism_score=284.4	prediction=consensus	ref_cov=60/62	total_cov=486/499
RA	274	.	Xen14_143	793	0	A	G	bias_e_value=4963520	bias_p_value=0.999996	consensus_score=2554.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.9972	major_base=G	major_cov=483/507	major_frequency=8.935e-01	minor_base=A	minor_cov=58/60	new_cov=483/507	polymorphism_frequency=8.935e-01	polymorphism_score=176.5	prediction=consensus	ref_cov=58/60	total_cov=541/568
RA	275	.	Xen14_143	807	0	C	T	bias_e_value=4536700	bias_p_value=0.914004	consensus_score=2653.9	fisher_strand_p_value=0.617622	frequency=1	ks_quality_p_value=0.995864	major_base=T	major_cov=496/529	major_frequency=9.031e-01	minor_base=C	minor_cov=56/54	new_cov=496/529	polymorphism_frequency=9.031e-01	polymorphism_score=162.6	prediction=consensus	ref_cov=56/54	total_cov=552/583
RA	276	.	Xen14_143	839	0	C	T	bias_e_value=1508220	bias_p_value=0.303859	consensus_score=2800.1	fisher_strand_p_value=0.0895824	frequency=1	ks_quality_p_value=0.991459	major_base=T	major_cov=496/576	major_frequency=9.062e-01	minor_base=C	minor_cov=61/50	new_cov=496/576	polymorphism_frequency=9.062e-01	polymorphism_score=162.5	prediction=consensus	ref_cov=61/50	total_cov=557/626
RA	277	.	Xen14_143	858	0	G	A	bias_e_value=3355030	bias_p_value=0.675935	consensus_score=2798.5	fisher_strand_p_value=0.312457	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=507/564	major_frequency=9.084e-01	minor_base=G	minor_cov=57/51	new_cov=507/564	polymorphism_frequency=9.084e-01	polymorphism_score=149.6	prediction=consensus	ref_cov=57/51	total_cov=566/616
RA	278	.	Xen14_143	879	0	A	G	bias_e_value=4369350	bias_p_value=0.880289	consensus_score=2697.2	fisher_strand_p_value=0.552482	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=521/509	major_frequency=9.019e-01	minor_base=A	minor_cov=60/52	new_cov=521/509	polymorphism_frequency=9.019e-01	polymorphism_score=157.4	prediction=consensus	ref_cov=60/52	total_cov=581/561
RA	279	.	Xen14_143	915	0	C	T	bias_e_value=373711	bias_p_value=0.0752913	consensus_score=2354.7	fisher_strand_p_value=0.0143594	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=518/483	major_frequency=8.391e-01	minor_base=C	minor_cov=118/74	new_cov=518/483	polymorphism_frequency=8.391e-01	polymorphism_score=inf	prediction=consensus	ref_cov=118/74	total_cov=636/557
RA	280	.	Xen14_143	960	0	T	C	bias_e_value=191228	bias_p_value=0.0385265	consensus_score=2641.8	fisher_strand_p_value=0.0067528	frequency=1	ks_quality_p_value=0.941814	major_base=C	major_cov=540/475	major_frequency=9.014e-01	minor_base=T	minor_cov=74/37	new_cov=540/475	polymorphism_frequency=9.014e-01	polymorphism_score=160.8	prediction=consensus	ref_cov=74/37	total_cov=617/512
RA	281	.	Xen14_143	967	0	C	T	bias_e_value=766494	bias_p_value=0.154425	consensus_score=2611.3	fisher_strand_p_value=0.0356253	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=553/455	major_frequency=8.992e-01	minor_base=C	minor_cov=74/39	new_cov=553/455	polymorphism_frequency=8.992e-01	polymorphism_score=164.1	prediction=consensus	ref_cov=74/39	total_cov=627/496
RA	282	.	Xen14_143	996	0	G	A	bias_e_value=1412490	bias_p_value=0.284573	consensus_score=2341.9	fisher_strand_p_value=0.0809979	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=509/403	major_frequency=8.941e-01	minor_base=G	minor_cov=70/38	new_cov=509/403	polymorphism_frequency=8.941e-01	polymorphism_score=161.4	prediction=consensus	ref_cov=70/38	total_cov=579/441
RA	283	.	Xen14_143	1030	0	A	C	bias_e_value=2672700	bias_p_value=0.538466	consensus_score=1860.5	fisher_strand_p_value=0.221701	frequency=1	ks_quality_p_value=0.949332	major_base=C	major_cov=341/295	major_frequency=8.945e-01	minor_base=A	minor_cov=46/29	new_cov=341/295	polymorphism_frequency=8.945e-01	polymorphism_score=167.0	prediction=consensus	ref_cov=46/29	total_cov=387/326
RA	284	.	Xen14_147	768	0	C	T	bias_e_value=4923530	bias_p_value=0.99194	consensus_reject=FREQUENCY_CUTOFF	consensus_score=392.2	fisher_strand_p_value=0.903243	frequency=2.927e-01	ks_quality_p_value=0.969564	major_base=C	major_cov=106/126	major_frequency=7.073e-01	minor_base=T	minor_cov=45/51	new_cov=45/51	polymorphism_frequency=2.927e-01	polymorphism_score=189.2	prediction=polymorphism	ref_cov=106/126	total_cov=152/177
RA	285	.	Xen14_147	922	0	T	C	bias_e_value=4525590	bias_p_value=0.911766	consensus_reject=FREQUENCY_CUTOFF	consensus_score=243.7	fisher_strand_p_value=0.668638	frequency=3.114e-01	ks_quality_p_value=0.913046	major_base=T	major_cov=74/83	major_frequency=6.886e-01	minor_base=C	minor_cov=36/35	new_cov=36/35	polymorphism_frequency=3.114e-01	polymorphism_score=142.5	prediction=polymorphism	ref_cov=74/83	total_cov=110/118
RA	286	.	Xen14_147	930	0	C	T	bias_e_value=3731660	bias_p_value=0.751814	consensus_reject=FREQUENCY_CUTOFF	consensus_score=223.8	fisher_strand_p_value=1	frequency=3.160e-01	ks_quality_p_value=0.384295	major_base=C	major_cov=69/76	major_frequency=6.840e-01	minor_base=T	minor_cov=32/35	new_cov=32/35	polymorphism_frequency=3.160e-01	polymorphism_score=134.6	prediction=polymorphism	ref_cov=69/76	total_cov=101/111
RA	287	.	Xen14_151	18	0	C	T	bias_e_value=3977520	bias_p_value=0.801347	consensus_reject=FREQUENCY_CUTOFF	consensus_score=98.7	fisher_strand_p_value=1	frequency=2.500e-01	ks_quality_p_value=0.440141	major_base=C	major_cov=23/31	major_frequency=7.500e-01	minor_base=T	minor_cov=8/10	new_cov=8/10	polymorphism_frequency=2.500e-01	polymorphism_score=30.2	prediction=polymorphism	ref_cov=23/31	total_cov=31/41
RA	288	.	Xen14_151	933	0	C	A	bias_e_value=4588110	bias_p_value=0.924362	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=6.3	fisher_strand_p_value=0.637186	frequency=4.706e-01	ks_quality_p_value=1	major_base=C	major_cov=5/4	major_frequency=5.294e-01	minor_base=A	minor_cov=3/5	new_cov=3/5	polymorphism_frequency=4.706e-01	polymorphism_score=18.5	prediction=polymorphism	ref_cov=5/4	total_cov=8/9
RA	289	.	Xen14_154	81	0	A	T	bias_e_value=1512730	bias_p_value=0.304768	consensus_reject=FREQUENCY_CUTOFF	consensus_score=207.7	fisher_strand_p_value=0.089193	frequency=2.632e-01	ks_quality_p_value=1	major_base=A	major_cov=52/32	major_frequency=7.368e-01	minor_base=T	minor_cov=13/17	new_cov=13/17	polymorphism_frequency=2.632e-01	polymorphism_score=77.2	prediction=polymorphism	ref_cov=52/32	total_cov=65/49
RA	290	.	Xen14_154	84	0	C	T	bias_e_value=1739090	bias_p_value=0.350373	consensus_reject=FREQUENCY_CUTOFF	consensus_score=175.0	fisher_strand_p_value=0.206235	frequency=2.500e-01	ks_quality_p_value=0.528053	major_base=C	major_cov=52/38	major_frequency=7.500e-01	minor_base=T	minor_cov=13/17	new_cov=13/17	polymorphism_frequency=2.500e-01	polymorphism_score=53.7	prediction=polymorphism	ref_cov=52/38	total_cov=65/55
RA	291	.	Xen14_154	93	0	A	G	bias_e_value=1106190	bias_p_value=0.222864	consensus_reject=FREQUENCY_CUTOFF	consensus_score=164.1	fisher_strand_p_value=0.111227	frequency=2.778e-01	ks_quality_p_value=0.520572	major_base=A	major_cov=52/39	major_frequency=7.222e-01	minor_base=G	minor_cov=14/21	new_cov=14/21	polymorphism_frequency=2.778e-01	polymorphism_score=64.5	prediction=polymorphism	ref_cov=52/39	total_cov=66/60
RA	292	.	Xen14_154	105	0	G	A	bias_e_value=874039	bias_p_value=0.176092	consensus_reject=FREQUENCY_CUTOFF	consensus_score=180.4	fisher_strand_p_value=0.127136	frequency=2.774e-01	ks_quality_p_value=0.332711	major_base=G	major_cov=57/42	major_frequency=7.226e-01	minor_base=A	minor_cov=16/22	new_cov=16/22	polymorphism_frequency=2.774e-01	polymorphism_score=71.3	prediction=polymorphism	ref_cov=57/42	total_cov=73/64
RA	293	.	Xen14_154	108	0	G	C	bias_e_value=503769	bias_p_value=0.101494	consensus_reject=FREQUENCY_CUTOFF	consensus_score=299.3	fisher_strand_p_value=0.19454	frequency=2.568e-01	ks_quality_p_value=0.107104	major_base=G	major_cov=60/50	major_frequency=7.432e-01	minor_base=C	minor_cov=16/22	new_cov=16/22	polymorphism_frequency=2.568e-01	polymorphism_score=111.3	prediction=polymorphism	ref_cov=60/50	total_cov=76/72
RA	294	.	Xen14_154	111	0	C	T	bias_e_value=1577990	bias_p_value=0.317916	consensus_reject=FREQUENCY_CUTOFF	consensus_score=234.7	fisher_strand_p_value=0.0947016	frequency=2.452e-01	ks_quality_p_value=1	major_base=C	major_cov=68/49	major_frequency=7.548e-01	minor_base=T	minor_cov=16/22	new_cov=16/22	polymorphism_frequency=2.452e-01	polymorphism_score=66.1	prediction=polymorphism	ref_cov=68/49	total_cov=84/72
RA	295	.	Xen14_154	114	0	T	C	bias_e_value=665640	bias_p_value=0.134106	consensus_reject=FREQUENCY_CUTOFF	consensus_score=242.8	fisher_strand_p_value=0.0589998	frequency=2.357e-01	ks_quality_p_value=0.503212	major_base=T	major_cov=71/49	major_frequency=7.643e-01	minor_base=C	minor_cov=15/22	new_cov=15/22	polymorphism_frequency=2.357e-01	polymorphism_score=66.1	prediction=polymorphism	ref_cov=71/49	total_cov=86/72
RA	296	.	Xen14_154	150	0	C	T	bias_e_value=1284760	bias_p_value=0.258839	consensus_reject=FREQUENCY_CUTOFF	consensus_score=290.4	fisher_strand_p_value=0.637955	frequency=2.596e-01	ks_quality_p_value=0.111316	major_base=C	major_cov=83/71	major_frequency=7.404e-01	minor_base=T	minor_cov=27/27	new_cov=27/27	polymorphism_frequency=2.596e-01	polymorphism_score=102.3	prediction=polymorphism	ref_cov=83/71	total_cov=110/98
RA	297	.	Xen14_154	153	0	T	A	bias_e_value=4280510	bias_p_value=0.862391	consensus_reject=FREQUENCY_CUTOFF	consensus_score=390.8	fisher_strand_p_value=0.523611	frequency=2.476e-01	ks_quality_p_value=1	major_base=T	major_cov=85/73	major_frequency=7.524e-01	minor_base=A	minor_cov=25/27	new_cov=25/27	polymorphism_frequency=2.476e-01	polymorphism_score=135.9	prediction=polymorphism	ref_cov=85/73	total_cov=110/100
RA	298	.	Xen14_154	162	0	C	T	bias_e_value=630709	bias_p_value=0.127068	consensus_reject=FREQUENCY_CUTOFF	consensus_score=280.6	fisher_strand_p_value=0.544774	frequency=2.765e-01	ks_quality_p_value=0.0508608	major_base=C	major_cov=84/73	major_frequency=7.235e-01	minor_base=T	minor_cov=29/31	new_cov=29/31	polymorphism_frequency=2.765e-01	polymorphism_score=116.1	prediction=polymorphism	ref_cov=84/73	total_cov=113/104
RA	299	.	Xen14_154	474	0	T	C	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=261.6	fisher_strand_p_value=1	frequency=2.830e-01	ks_quality_p_value=1	major_base=T	major_cov=58/94	major_frequency=7.170e-01	minor_base=C	minor_cov=23/37	new_cov=23/37	polymorphism_frequency=2.830e-01	polymorphism_score=115.9	prediction=polymorphism	ref_cov=58/94	total_cov=81/131
RA	300	.	Xen14_155	416	0	A	G	bias_e_value=19.9743	bias_p_value=4.02421e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=72.6	fisher_strand_p_value=2.48274e-07	frequency=2.581e-01	ks_quality_p_value=1	major_base=A	major_cov=13/33	major_frequency=7.419e-01	minor_base=G	minor_cov=16/0	new_cov=16/0	polymorphism_frequency=2.581e-01	polymorphism_score=13.6	prediction=polymorphism	ref_cov=13/33	total_cov=29/33
RA	301	.	Xen14_156	432	0	T	G	bias_e_value=3839560	bias_p_value=0.773552	consensus_reject=FREQUENCY_CUTOFF	consensus_score=518.5	fisher_strand_p_value=0.462661	frequency=2.470e-01	ks_quality_p_value=0.881337	major_base=T	major_cov=111/78	major_frequency=7.530e-01	minor_base=G	minor_cov=33/29	new_cov=33/29	polymorphism_frequency=2.470e-01	polymorphism_score=171.2	prediction=polymorphism	ref_cov=111/78	total_cov=144/107
RA	302	.	Xen14_156	453	0	G	A	bias_e_value=3344980	bias_p_value=0.67391	consensus_reject=FREQUENCY_CUTOFF	consensus_score=372.3	fisher_strand_p_value=0.754607	frequency=2.411e-01	ks_quality_p_value=0.411765	major_base=G	major_cov=91/79	major_frequency=7.589e-01	minor_base=A	minor_cov=27/27	new_cov=27/27	polymorphism_frequency=2.411e-01	polymorphism_score=99.4	prediction=polymorphism	ref_cov=91/79	total_cov=118/106
RA	303	.	Xen14_156	569	0	A	G	bias_e_value=2684750	bias_p_value=0.540895	consensus_reject=FREQUENCY_CUTOFF	consensus_score=342.2	fisher_strand_p_value=0.212031	frequency=2.689e-01	ks_quality_p_value=1	major_base=A	major_cov=70/85	major_frequency=7.311e-01	minor_base=G	minor_cov=20/37	new_cov=20/37	polymorphism_frequency=2.689e-01	polymorphism_score=108.8	prediction=polymorphism	ref_cov=70/85	total_cov=90/122
RA	304	.	Xen14_156	574	0	C	A	bias_e_value=1312820	bias_p_value=0.264492	consensus_reject=FREQUENCY_CUTOFF	consensus_score=444.9	fisher_strand_p_value=0.448938	frequency=2.811e-01	ks_quality_p_value=0.162972	major_base=C	major_cov=71/85	major_frequency=7.189e-01	minor_base=A	minor_cov=24/37	new_cov=24/37	polymorphism_frequency=2.811e-01	polymorphism_score=161.1	prediction=polymorphism	ref_cov=71/85	total_cov=95/122
RA	305	.	Xen14_156	605	0	A	T	bias_e_value=4928840	bias_p_value=0.993008	consensus_reject=FREQUENCY_CUTOFF	consensus_score=385.6	fisher_strand_p_value=0.884104	frequency=3.380e-01	ks_quality_p_value=1	major_base=A	major_cov=59/84	major_frequency=6.620e-01	minor_base=T	minor_cov=29/44	new_cov=29/44	polymorphism_frequency=3.380e-01	polymorphism_score=204.1	prediction=polymorphism	ref_cov=59/84	total_cov=88/129
RA	306	.	Xen14_156	611	0	A	G	bias_e_value=3668240	bias_p_value=0.739038	consensus_reject=FREQUENCY_CUTOFF	consensus_score=288.7	fisher_strand_p_value=0.371174	frequency=3.223e-01	ks_quality_p_value=1	major_base=A	major_cov=60/83	major_frequency=6.777e-01	minor_base=G	minor_cov=24/44	new_cov=24/44	polymorphism_frequency=3.223e-01	polymorphism_score=138.2	prediction=polymorphism	ref_cov=60/83	total_cov=84/128
RA	307	.	Xen14_156	620	0	T	C	bias_e_value=4623640	bias_p_value=0.931522	consensus_reject=FREQUENCY_CUTOFF	consensus_score=277.4	fisher_strand_p_value=0.653535	frequency=3.286e-01	ks_quality_p_value=1	major_base=T	major_cov=56/85	major_frequency=6.714e-01	minor_base=C	minor_cov=25/44	new_cov=25/44	polymorphism_frequency=3.286e-01	polymorphism_score=138.2	prediction=polymorphism	ref_cov=56/85	total_cov=81/129
RA	308	.	Xen14_156	623	0	C	T	bias_e_value=4618510	bias_p_value=0.930488	consensus_reject=FREQUENCY_CUTOFF	consensus_score=275.4	fisher_strand_p_value=0.651114	frequency=3.317e-01	ks_quality_p_value=1	major_base=C	major_cov=56/83	major_frequency=6.683e-01	minor_base=T	minor_cov=25/44	new_cov=25/44	polymorphism_frequency=3.317e-01	polymorphism_score=138.1	prediction=polymorphism	ref_cov=56/83	total_cov=81/127
RA	309	.	Xen14_156	632	0	T	C	bias_e_value=3974960	bias_p_value=0.800832	consensus_reject=FREQUENCY_CUTOFF	consensus_score=249.6	fisher_strand_p_value=0.462889	frequency=3.524e-01	ks_quality_p_value=0.949503	major_base=T	major_cov=55/81	major_frequency=6.476e-01	minor_base=C	minor_cov=26/48	new_cov=26/48	polymorphism_frequency=3.524e-01	polymorphism_score=154.0	prediction=polymorphism	ref_cov=55/81	total_cov=81/129
RA	310	.	Xen14_156	650	0	T	C	bias_e_value=3313070	bias_p_value=0.667482	consensus_reject=FREQUENCY_CUTOFF	consensus_score=214.2	fisher_strand_p_value=0.305262	frequency=3.714e-01	ks_quality_p_value=1	major_base=T	major_cov=54/78	major_frequency=6.286e-01	minor_base=C	minor_cov=26/52	new_cov=26/52	polymorphism_frequency=3.714e-01	polymorphism_score=161.3	prediction=polymorphism	ref_cov=54/78	total_cov=80/130
RA	311	.	Xen14_156	653	0	G	A	bias_e_value=3325740	bias_p_value=0.670034	consensus_reject=FREQUENCY_CUTOFF	consensus_score=208.1	fisher_strand_p_value=0.307419	frequency=3.857e-01	ks_quality_p_value=1	major_base=G	major_cov=53/76	major_frequency=6.143e-01	minor_base=A	minor_cov=27/54	new_cov=27/54	polymorphism_frequency=3.857e-01	polymorphism_score=170.3	prediction=polymorphism	ref_cov=53/76	total_cov=80/130
RA	312	.	Xen14_156	704	0	C	T	bias_e_value=2792750	bias_p_value=0.562653	consensus_reject=FREQUENCY_CUTOFF	consensus_score=108.7	fisher_strand_p_value=0.226364	frequency=4.533e-01	ks_quality_p_value=1	major_base=C	major_cov=60/63	major_frequency=5.467e-01	minor_base=T	minor_cov=41/61	new_cov=41/61	polymorphism_frequency=4.533e-01	polymorphism_score=219.6	prediction=polymorphism	ref_cov=60/63	total_cov=101/124
RA	313	.	Xen14_156	785	0	T	C	bias_e_value=357129	bias_p_value=0.0719504	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.0	fisher_strand_p_value=0.0893876	frequency=4.539e-01	ks_quality_p_value=0.151891	major_base=T	major_cov=47/30	major_frequency=5.461e-01	minor_base=C	minor_cov=29/35	new_cov=29/35	polymorphism_frequency=4.539e-01	polymorphism_score=142.0	prediction=polymorphism	ref_cov=47/30	total_cov=76/65
RA	314	.	Xen14_159	78	0	G	A	bias_e_value=791473	bias_p_value=0.159458	consensus_reject=FREQUENCY_CUTOFF	consensus_score=53.2	fisher_strand_p_value=0.157374	frequency=6.456e-01	ks_quality_p_value=0.236024	major_base=A	major_cov=23/28	major_frequency=6.456e-01	minor_base=G	minor_cov=18/10	new_cov=23/28	polymorphism_frequency=6.456e-01	polymorphism_score=55.6	prediction=polymorphism	ref_cov=18/10	total_cov=41/38
RA	315	.	Xen14_159	80	0	G	A	bias_e_value=474119	bias_p_value=0.0955203	consensus_reject=FREQUENCY_CUTOFF	consensus_score=54.6	fisher_strand_p_value=0.157374	frequency=6.456e-01	ks_quality_p_value=0.122687	major_base=A	major_cov=23/28	major_frequency=6.456e-01	minor_base=G	minor_cov=18/10	new_cov=23/28	polymorphism_frequency=6.456e-01	polymorphism_score=55.8	prediction=polymorphism	ref_cov=18/10	total_cov=41/38
RA	316	.	Xen14_159	91	0	T	G	bias_e_value=252767	bias_p_value=0.0509248	consensus_reject=FREQUENCY_CUTOFF	consensus_score=83.7	fisher_strand_p_value=0.0628205	frequency=6.337e-01	ks_quality_p_value=0.141679	major_base=G	major_cov=25/39	major_frequency=6.337e-01	minor_base=T	minor_cov=22/15	new_cov=25/39	polymorphism_frequency=6.337e-01	polymorphism_score=99.9	prediction=polymorphism	ref_cov=22/15	total_cov=47/54
RA	317	.	Xen14_159	338	0	T	C	bias_e_value=4415940	bias_p_value=0.889675	consensus_reject=FREQUENCY_CUTOFF	consensus_score=42.0	fisher_strand_p_value=0.5687	frequency=5.690e-01	ks_quality_p_value=1	major_base=C	major_cov=41/25	major_frequency=5.690e-01	minor_base=T	minor_cov=28/22	new_cov=41/25	polymorphism_frequency=5.690e-01	polymorphism_score=107.4	prediction=polymorphism	ref_cov=28/22	total_cov=69/47
RA	318	.	Xen14_159	582	0	T	C	bias_e_value=1605690	bias_p_value=0.323498	consensus_reject=FREQUENCY_CUTOFF	consensus_score=80.6	fisher_strand_p_value=0.0970826	frequency=5.946e-01	ks_quality_p_value=1	major_base=C	major_cov=52/36	major_frequency=5.946e-01	minor_base=T	minor_cov=27/33	new_cov=52/36	polymorphism_frequency=5.946e-01	polymorphism_score=122.2	prediction=polymorphism	ref_cov=27/33	total_cov=79/69
RA	319	.	Xen14_16	39947	0	C	G	bias_e_value=10.4315	bias_p_value=2.10162e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=163.5	fisher_strand_p_value=1.24356e-07	frequency=2.247e-01	ks_quality_p_value=1	major_base=C	major_cov=25/44	major_frequency=7.753e-01	minor_base=G	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.247e-01	polymorphism_score=27.6	prediction=polymorphism	ref_cov=25/44	total_cov=51/44
RA	320	.	Xen14_17	79607	0	A	G	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=542.7	fisher_strand_p_value=1	frequency=7.439e-01	ks_quality_p_value=1	major_base=G	major_cov=358/220	major_frequency=7.439e-01	minor_base=A	minor_cov=123/76	new_cov=358/220	polymorphism_frequency=7.439e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=123/76	total_cov=482/298
RA	321	.	Xen14_17	79624	0	T	G	bias_e_value=4459370	bias_p_value=0.898426	consensus_reject=FREQUENCY_CUTOFF	consensus_score=844.3	fisher_strand_p_value=0.584594	frequency=7.722e-01	ks_quality_p_value=1	major_base=G	major_cov=457/299	major_frequency=7.722e-01	minor_base=T	minor_cov=140/83	new_cov=457/299	polymorphism_frequency=7.722e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=140/83	total_cov=599/383
RA	322	.	Xen14_17	79625	0	G	A	bias_e_value=4463930	bias_p_value=0.899345	consensus_reject=FREQUENCY_CUTOFF	consensus_score=874.3	fisher_strand_p_value=0.586311	frequency=7.709e-01	ks_quality_p_value=1	major_base=A	major_cov=458/299	major_frequency=7.709e-01	minor_base=G	minor_cov=141/84	new_cov=458/299	polymorphism_frequency=7.709e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=141/84	total_cov=599/383
RA	323	.	Xen14_17	79627	0	T	C	bias_e_value=4305150	bias_p_value=0.867355	consensus_reject=FREQUENCY_CUTOFF	consensus_score=886.4	fisher_strand_p_value=0.531372	frequency=7.732e-01	ks_quality_p_value=1	major_base=C	major_cov=458/299	major_frequency=7.732e-01	minor_base=T	minor_cov=140/82	new_cov=458/299	polymorphism_frequency=7.732e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=140/82	total_cov=599/383
RA	324	.	Xen14_17	79628	0	T	G	bias_e_value=4463300	bias_p_value=0.899217	consensus_reject=FREQUENCY_CUTOFF	consensus_score=824.2	fisher_strand_p_value=0.586071	frequency=7.702e-01	ks_quality_p_value=1	major_base=G	major_cov=456/298	major_frequency=7.702e-01	minor_base=T	minor_cov=141/84	new_cov=456/298	polymorphism_frequency=7.702e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=141/84	total_cov=599/383
RA	325	.	Xen14_17	79736	0	T	C	bias_e_value=2020880	bias_p_value=0.407146	consensus_score=8120.7	fisher_strand_p_value=0.137099	frequency=1	ks_quality_p_value=0.991296	major_base=C	major_cov=1559/1640	major_frequency=9.185e-01	minor_base=T	minor_cov=152/132	new_cov=1559/1640	polymorphism_frequency=9.185e-01	polymorphism_score=inf	prediction=consensus	ref_cov=152/132	total_cov=1712/1773
RA	326	.	Xen14_17	79802	0	T	G	bias_e_value=4722740	bias_p_value=0.951486	consensus_score=10054.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.705138	major_base=G	major_cov=1867/1561	major_frequency=9.158e-01	minor_base=T	minor_cov=172/143	new_cov=1867/1561	polymorphism_frequency=9.158e-01	polymorphism_score=inf	prediction=consensus	ref_cov=172/143	total_cov=2041/1706
RA	327	.	Xen14_17	80371	0	G	A	bias_e_value=4057440	bias_p_value=0.81745	consensus_score=138.4	fisher_strand_p_value=0.460317	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=28/34	major_frequency=9.841e-01	minor_base=G	minor_cov=1/0	new_cov=28/34	polymorphism_frequency=9.841e-01	polymorphism_score=-5.5	prediction=consensus	ref_cov=1/0	total_cov=29/34
RA	328	.	Xen14_170	78	0	A	G	bias_e_value=117203	bias_p_value=0.0236128	consensus_reject=FREQUENCY_CUTOFF	consensus_score=20.5	fisher_strand_p_value=0.0176224	frequency=5.481e-01	ks_quality_p_value=0.20183	major_base=G	major_cov=21/36	major_frequency=5.481e-01	minor_base=A	minor_cov=29/18	new_cov=21/36	polymorphism_frequency=5.481e-01	polymorphism_score=102.1	prediction=polymorphism	ref_cov=29/18	total_cov=50/54
RA	329	.	Xen14_174	36	0	T	G	bias_e_value=2564110	bias_p_value=0.51659	consensus_reject=FREQUENCY_CUTOFF	consensus_score=202.0	fisher_strand_p_value=0.196725	frequency=2.500e-01	ks_quality_p_value=1	major_base=T	major_cov=43/44	major_frequency=7.500e-01	minor_base=G	minor_cov=19/10	new_cov=19/10	polymorphism_frequency=2.500e-01	polymorphism_score=78.5	prediction=polymorphism	ref_cov=43/44	total_cov=62/54
RA	330	.	Xen14_176	97	0	T	C	bias_e_value=2982040	bias_p_value=0.600789	consensus_reject=FREQUENCY_CUTOFF	consensus_score=237.6	fisher_strand_p_value=1	frequency=2.544e-01	ks_quality_p_value=0.253054	major_base=T	major_cov=84/42	major_frequency=7.456e-01	minor_base=C	minor_cov=29/14	new_cov=29/14	polymorphism_frequency=2.544e-01	polymorphism_score=78.3	prediction=polymorphism	ref_cov=84/42	total_cov=113/56
RA	331	.	Xen14_176	208	0	T	C	bias_e_value=1790310	bias_p_value=0.360692	consensus_reject=FREQUENCY_CUTOFF	consensus_score=350.2	fisher_strand_p_value=0.498695	frequency=2.075e-01	ks_quality_p_value=0.227798	major_base=T	major_cov=84/84	major_frequency=7.925e-01	minor_base=C	minor_cov=25/19	new_cov=25/19	polymorphism_frequency=2.075e-01	polymorphism_score=78.2	prediction=polymorphism	ref_cov=84/84	total_cov=109/103
RA	332	.	Xen14_176	353	0	C	T	bias_e_value=1297230	bias_p_value=0.261353	consensus_reject=FREQUENCY_CUTOFF	consensus_score=324.7	fisher_strand_p_value=0.747828	frequency=2.454e-01	ks_quality_p_value=0.0962352	major_base=C	major_cov=65/98	major_frequency=7.546e-01	minor_base=T	minor_cov=23/30	new_cov=23/30	polymorphism_frequency=2.454e-01	polymorphism_score=98.7	prediction=polymorphism	ref_cov=65/98	total_cov=88/128
RA	333	.	Xen14_176	427	0	T	C	bias_e_value=1062880	bias_p_value=0.214138	consensus_reject=FREQUENCY_CUTOFF	consensus_score=211.4	fisher_strand_p_value=0.137597	frequency=3.285e-01	ks_quality_p_value=0.398753	major_base=T	major_cov=59/80	major_frequency=6.715e-01	minor_base=C	minor_cov=37/31	new_cov=37/31	polymorphism_frequency=3.285e-01	polymorphism_score=138.0	prediction=polymorphism	ref_cov=59/80	total_cov=96/111
RA	334	.	Xen14_176	454	0	C	G	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=247.5	fisher_strand_p_value=1	frequency=3.444e-01	ks_quality_p_value=1	major_base=C	major_cov=56/62	major_frequency=6.556e-01	minor_base=G	minor_cov=30/32	new_cov=30/32	polymorphism_frequency=3.444e-01	polymorphism_score=193.7	prediction=polymorphism	ref_cov=56/62	total_cov=86/94
RA	335	.	Xen14_176	493	0	C	T	bias_e_value=398794	bias_p_value=0.0803448	consensus_reject=FREQUENCY_CUTOFF	consensus_score=90.8	fisher_strand_p_value=0.696953	frequency=3.604e-01	ks_quality_p_value=0.0223284	major_base=C	major_cov=38/33	major_frequency=6.396e-01	minor_base=T	minor_cov=23/17	new_cov=23/17	polymorphism_frequency=3.604e-01	polymorphism_score=81.3	prediction=polymorphism	ref_cov=38/33	total_cov=61/50
RA	336	.	Xen14_18	586	0	A	C	bias_e_value=787836	bias_p_value=0.158725	consensus_reject=FREQUENCY_CUTOFF	consensus_score=360.1	fisher_strand_p_value=0.143015	frequency=2.589e-01	ks_quality_p_value=0.258167	major_base=A	major_cov=79/67	major_frequency=7.411e-01	minor_base=C	minor_cov=21/30	new_cov=21/30	polymorphism_frequency=2.589e-01	polymorphism_score=140.9	prediction=polymorphism	ref_cov=79/67	total_cov=101/97
RA	337	.	Xen14_18	597	0	T	C	bias_e_value=844753	bias_p_value=0.170192	consensus_reject=FREQUENCY_CUTOFF	consensus_score=283.3	fisher_strand_p_value=0.0404471	frequency=2.275e-01	ks_quality_p_value=1	major_base=T	major_cov=77/52	major_frequency=7.725e-01	minor_base=C	minor_cov=15/23	new_cov=15/23	polymorphism_frequency=2.275e-01	polymorphism_score=64.1	prediction=polymorphism	ref_cov=77/52	total_cov=92/75
RA	338	.	Xen14_18	44420	0	C	T	bias_e_value=1.73163e-08	bias_p_value=3.48871e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=244.9	fisher_strand_p_value=9.199e-17	frequency=2.000e-01	ks_quality_p_value=1	major_base=C	major_cov=18/90	major_frequency=8.000e-01	minor_base=T	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=2.000e-01	polymorphism_score=13.3	prediction=polymorphism	ref_cov=18/90	total_cov=54/90
RA	339	.	Xen14_182	78	0	A	G	bias_e_value=603060	bias_p_value=0.121498	consensus_reject=FREQUENCY_CUTOFF	consensus_score=105.4	fisher_strand_p_value=0.382939	frequency=4.188e-01	ks_quality_p_value=0.0683304	major_base=A	major_cov=51/60	major_frequency=5.812e-01	minor_base=G	minor_cov=42/38	new_cov=42/38	polymorphism_frequency=4.188e-01	polymorphism_score=175.5	prediction=polymorphism	ref_cov=51/60	total_cov=93/98
RA	340	.	Xen14_182	96	0	A	G	bias_e_value=4391940	bias_p_value=0.884841	consensus_reject=FREQUENCY_CUTOFF	consensus_score=171.0	fisher_strand_p_value=0.573048	frequency=3.756e-01	ks_quality_p_value=0.977662	major_base=A	major_cov=64/69	major_frequency=6.244e-01	minor_base=G	minor_cov=42/38	new_cov=42/38	polymorphism_frequency=3.756e-01	polymorphism_score=169.7	prediction=polymorphism	ref_cov=64/69	total_cov=106/107
RA	341	.	Xen14_182	145	0	T	C	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=416.1	fisher_strand_p_value=1	frequency=2.258e-01	ks_quality_p_value=1	major_base=T	major_cov=99/93	major_frequency=7.742e-01	minor_base=C	minor_cov=29/27	new_cov=29/27	polymorphism_frequency=2.258e-01	polymorphism_score=100.5	prediction=polymorphism	ref_cov=99/93	total_cov=128/120
RA	342	.	Xen14_182	146	0	A	G	bias_e_value=4811860	bias_p_value=0.969442	consensus_reject=FREQUENCY_CUTOFF	consensus_score=416.6	fisher_strand_p_value=0.763193	frequency=2.258e-01	ks_quality_p_value=1	major_base=A	major_cov=98/94	major_frequency=7.742e-01	minor_base=G	minor_cov=30/26	new_cov=30/26	polymorphism_frequency=2.258e-01	polymorphism_score=99.7	prediction=polymorphism	ref_cov=98/94	total_cov=128/120
RA	343	.	Xen14_183	256	0	T	G	bias_e_value=2071340	bias_p_value=0.41731	consensus_reject=FREQUENCY_CUTOFF	consensus_score=299.3	fisher_strand_p_value=0.313256	frequency=2.109e-01	ks_quality_p_value=0.450261	major_base=T	major_cov=62/54	major_frequency=7.891e-01	minor_base=G	minor_cov=13/18	new_cov=13/18	polymorphism_frequency=2.109e-01	polymorphism_score=77.9	prediction=polymorphism	ref_cov=62/54	total_cov=75/73
RA	344	.	Xen14_184	137	0	G	A	bias_e_value=2721780	bias_p_value=0.548355	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1924.1	fisher_strand_p_value=0.21742	frequency=2.127e-01	ks_quality_p_value=0.997498	major_base=G	major_cov=426/470	major_frequency=7.873e-01	minor_base=A	minor_cov=104/138	new_cov=104/138	polymorphism_frequency=2.127e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=426/470	total_cov=530/608
RA	345	.	Xen14_185	394	0	C	T	bias_e_value=3684970	bias_p_value=0.742407	consensus_reject=FREQUENCY_CUTOFF	consensus_score=268.3	fisher_strand_p_value=0.374588	frequency=3.686e-01	ks_quality_p_value=1	major_base=C	major_cov=123/98	major_frequency=6.314e-01	minor_base=T	minor_cov=65/64	new_cov=65/64	polymorphism_frequency=3.686e-01	polymorphism_score=266.8	prediction=polymorphism	ref_cov=123/98	total_cov=188/162
RA	346	.	Xen14_19	57512	0	A	.	bias_e_value=4963420	bias_p_value=0.999976	consensus_reject=FREQUENCY_CUTOFF	consensus_score=399.1	fisher_strand_p_value=1	frequency=4.430e-01	ks_quality_p_value=0.993048	major_base=A	major_cov=60/67	major_frequency=5.570e-01	minor_base=.	minor_cov=47/54	new_cov=47/54	polymorphism_frequency=4.430e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=60/67	total_cov=107/122
RA	347	.	Xen14_19	57809	0	T	.	consensus_score=23.4	frequency=1	major_base=.	major_cov=4/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/3
RA	348	.	Xen14_19	58064	0	G	C	bias_e_value=2.34589e-06	bias_p_value=4.72624e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=187.7	fisher_strand_p_value=1.43772e-14	frequency=2.083e-01	ks_quality_p_value=1	major_base=G	major_cov=68/8	major_frequency=7.917e-01	minor_base=C	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.083e-01	polymorphism_score=23.7	prediction=polymorphism	ref_cov=68/8	total_cov=68/41
RA	349	.	Xen14_191	160	0	T	C	bias_e_value=3103020	bias_p_value=0.625163	consensus_reject=FREQUENCY_CUTOFF	consensus_score=292.6	fisher_strand_p_value=0.271257	frequency=7.438e-01	ks_quality_p_value=1	major_base=C	major_cov=114/95	major_frequency=7.438e-01	minor_base=T	minor_cov=45/27	new_cov=114/95	polymorphism_frequency=7.438e-01	polymorphism_score=135.5	prediction=polymorphism	ref_cov=45/27	total_cov=159/122
RA	350	.	Xen14_191	220	0	A	G	bias_e_value=4747410	bias_p_value=0.956456	consensus_score=826.8	fisher_strand_p_value=0.719797	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=218/187	major_frequency=8.265e-01	minor_base=A	minor_cov=48/37	new_cov=218/187	polymorphism_frequency=8.265e-01	polymorphism_score=143.1	prediction=consensus	ref_cov=48/37	total_cov=266/226
RA	351	.	Xen14_191	221	0	C	A	bias_e_value=4743260	bias_p_value=0.95562	consensus_score=906.0	fisher_strand_p_value=0.72003	frequency=1	ks_quality_p_value=0.996164	major_base=A	major_cov=219/189	major_frequency=8.293e-01	minor_base=C	minor_cov=47/37	new_cov=219/189	polymorphism_frequency=8.293e-01	polymorphism_score=214.7	prediction=consensus	ref_cov=47/37	total_cov=266/226
RA	352	.	Xen14_191	226	0	A	G	bias_e_value=4869240	bias_p_value=0.981001	consensus_score=826.3	fisher_strand_p_value=0.811511	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=217/188	major_frequency=8.265e-01	minor_base=A	minor_cov=47/38	new_cov=217/188	polymorphism_frequency=8.265e-01	polymorphism_score=145.5	prediction=consensus	ref_cov=47/38	total_cov=265/226
RA	353	.	Xen14_191	227	0	G	A	bias_e_value=4871640	bias_p_value=0.981486	consensus_score=813.6	fisher_strand_p_value=0.81385	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=217/187	major_frequency=8.228e-01	minor_base=G	minor_cov=48/39	new_cov=217/187	polymorphism_frequency=8.228e-01	polymorphism_score=149.8	prediction=consensus	ref_cov=48/39	total_cov=265/226
RA	354	.	Xen14_191	229	0	C	T	bias_e_value=4940690	bias_p_value=0.995396	consensus_score=811.0	fisher_strand_p_value=0.90559	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=217/187	major_frequency=8.245e-01	minor_base=C	minor_cov=47/39	new_cov=217/187	polymorphism_frequency=8.245e-01	polymorphism_score=146.7	prediction=consensus	ref_cov=47/39	total_cov=264/227
RA	355	.	Xen14_191	251	0	A	G	bias_e_value=1945040	bias_p_value=0.391866	consensus_score=1229.6	fisher_strand_p_value=0.128357	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=274/257	major_frequency=8.821e-01	minor_base=A	minor_cov=44/27	new_cov=274/257	polymorphism_frequency=8.821e-01	polymorphism_score=105.2	prediction=consensus	ref_cov=44/27	total_cov=318/284
RA	356	.	Xen14_191	268	0	A	G	bias_e_value=3205970	bias_p_value=0.645904	consensus_score=1296.3	fisher_strand_p_value=0.296049	frequency=1	ks_quality_p_value=0.971193	major_base=G	major_cov=271/273	major_frequency=8.933e-01	minor_base=A	minor_cov=37/28	new_cov=271/273	polymorphism_frequency=8.933e-01	polymorphism_score=93.9	prediction=consensus	ref_cov=37/28	total_cov=308/303
RA	357	.	Xen14_191	275	0	A	G	bias_e_value=3198760	bias_p_value=0.644452	consensus_score=1291.9	fisher_strand_p_value=0.286358	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=260/267	major_frequency=8.932e-01	minor_base=A	minor_cov=36/27	new_cov=260/267	polymorphism_frequency=8.932e-01	polymorphism_score=88.2	prediction=consensus	ref_cov=36/27	total_cov=296/294
RA	358	.	Xen14_191	292	0	T	C	bias_e_value=3974190	bias_p_value=0.800676	consensus_score=1404.7	fisher_strand_p_value=0.4971	frequency=1	ks_quality_p_value=0.883775	major_base=C	major_cov=281/268	major_frequency=9.030e-01	minor_base=T	minor_cov=33/26	new_cov=281/268	polymorphism_frequency=9.030e-01	polymorphism_score=84.4	prediction=consensus	ref_cov=33/26	total_cov=315/295
RA	359	.	Xen14_191	310	0	G	A	bias_e_value=4190750	bias_p_value=0.844306	consensus_score=1387.1	fisher_strand_p_value=0.499752	frequency=1	ks_quality_p_value=0.993982	major_base=A	major_cov=263/276	major_frequency=8.983e-01	minor_base=G	minor_cov=33/28	new_cov=263/276	polymorphism_frequency=8.983e-01	polymorphism_score=89.4	prediction=consensus	ref_cov=33/28	total_cov=296/304
RA	360	.	Xen14_191	334	0	T	A	bias_e_value=4336280	bias_p_value=0.873627	consensus_score=1443.4	fisher_strand_p_value=0.548341	frequency=1	ks_quality_p_value=0.987418	major_base=A	major_cov=246/253	major_frequency=9.122e-01	minor_base=T	minor_cov=26/22	new_cov=246/253	polymorphism_frequency=9.122e-01	polymorphism_score=101.5	prediction=consensus	ref_cov=26/22	total_cov=272/277
RA	361	.	Xen14_191	358	0	G	A	bias_e_value=4911520	bias_p_value=0.98952	consensus_score=1109.3	fisher_strand_p_value=0.864077	frequency=1	ks_quality_p_value=0.99385	major_base=A	major_cov=204/216	major_frequency=9.190e-01	minor_base=G	minor_cov=19/18	new_cov=204/216	polymorphism_frequency=9.190e-01	polymorphism_score=48.2	prediction=consensus	ref_cov=19/18	total_cov=223/234
RA	362	.	Xen14_191	370	0	A	C	bias_e_value=3594620	bias_p_value=0.724205	consensus_score=1136.9	fisher_strand_p_value=0.358751	frequency=1	ks_quality_p_value=0.993736	major_base=C	major_cov=193/195	major_frequency=9.238e-01	minor_base=A	minor_cov=19/13	new_cov=193/195	polymorphism_frequency=9.238e-01	polymorphism_score=61.7	prediction=consensus	ref_cov=19/13	total_cov=212/208
RA	363	.	Xen14_193	90	0	T	C	bias_e_value=2762720	bias_p_value=0.556604	consensus_reject=FREQUENCY_CUTOFF	consensus_score=252.7	fisher_strand_p_value=0.865617	frequency=2.568e-01	ks_quality_p_value=0.256831	major_base=T	major_cov=80/56	major_frequency=7.432e-01	minor_base=C	minor_cov=27/20	new_cov=27/20	polymorphism_frequency=2.568e-01	polymorphism_score=89.0	prediction=polymorphism	ref_cov=80/56	total_cov=107/76
RA	364	.	Xen14_193	156	0	C	T	bias_e_value=3561950	bias_p_value=0.717623	consensus_reject=FREQUENCY_CUTOFF	consensus_score=494.4	fisher_strand_p_value=0.350177	frequency=2.351e-01	ks_quality_p_value=1	major_base=C	major_cov=136/108	major_frequency=7.649e-01	minor_base=T	minor_cov=47/28	new_cov=47/28	polymorphism_frequency=2.351e-01	polymorphism_score=140.3	prediction=polymorphism	ref_cov=136/108	total_cov=183/136
RA	365	.	Xen14_193	361	0	C	T	bias_e_value=4932700	bias_p_value=0.993786	consensus_reject=FREQUENCY_CUTOFF	consensus_score=367.7	fisher_strand_p_value=0.890612	frequency=2.667e-01	ks_quality_p_value=1	major_base=C	major_cov=98/100	major_frequency=7.333e-01	minor_base=T	minor_cov=37/35	new_cov=37/35	polymorphism_frequency=2.667e-01	polymorphism_score=135.6	prediction=polymorphism	ref_cov=98/100	total_cov=135/135
RA	366	.	Xen14_195	19	0	G	A	bias_e_value=2120050	bias_p_value=0.427125	consensus_reject=FREQUENCY_CUTOFF	consensus_score=44.3	fisher_strand_p_value=0.418301	frequency=5.542e-01	ks_quality_p_value=0.349279	major_base=A	major_cov=56/36	major_frequency=5.542e-01	minor_base=G	minor_cov=50/24	new_cov=56/36	polymorphism_frequency=5.542e-01	polymorphism_score=158.9	prediction=polymorphism	ref_cov=50/24	total_cov=106/60
RA	367	.	Xen14_2	87686	0	T	G	bias_e_value=140.955	bias_p_value=2.83981e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=88.2	fisher_strand_p_value=2.01169e-06	frequency=3.115e-01	ks_quality_p_value=1	major_base=T	major_cov=26/16	major_frequency=6.885e-01	minor_base=G	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=3.115e-01	polymorphism_score=15.5	prediction=polymorphism	ref_cov=26/16	total_cov=26/35
RA	368	.	Xen14_202	78	0	A	G	bias_e_value=1882140	bias_p_value=0.379193	consensus_score=867.2	fisher_strand_p_value=0.122256	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=173/169	major_frequency=8.792e-01	minor_base=A	minor_cov=18/29	new_cov=173/169	polymorphism_frequency=8.792e-01	polymorphism_score=69.5	prediction=consensus	ref_cov=18/29	total_cov=191/198
RA	369	.	Xen14_202	105	0	G	A	bias_e_value=2812090	bias_p_value=0.566549	consensus_score=1147.8	fisher_strand_p_value=0.228997	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=230/245	major_frequency=8.543e-01	minor_base=G	minor_cov=33/48	new_cov=230/245	polymorphism_frequency=8.543e-01	polymorphism_score=132.1	prediction=consensus	ref_cov=33/48	total_cov=263/293
RA	370	.	Xen14_202	109	0	A	T	bias_e_value=2814130	bias_p_value=0.566961	consensus_score=1356.7	fisher_strand_p_value=0.229276	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=228/244	major_frequency=8.535e-01	minor_base=A	minor_cov=33/48	new_cov=228/244	polymorphism_frequency=8.535e-01	polymorphism_score=193.6	prediction=consensus	ref_cov=33/48	total_cov=262/293
RA	371	.	Xen14_202	126	0	C	G	bias_e_value=1754240	bias_p_value=0.353426	consensus_score=1657.9	fisher_strand_p_value=0.110284	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=279/293	major_frequency=8.654e-01	minor_base=C	minor_cov=35/54	new_cov=279/293	polymorphism_frequency=8.654e-01	polymorphism_score=236.0	prediction=consensus	ref_cov=35/54	total_cov=315/349
RA	372	.	Xen14_202	134	0	C	T	bias_e_value=1400410	bias_p_value=0.282139	consensus_score=1444.3	fisher_strand_p_value=0.0803743	frequency=1	ks_quality_p_value=0.995742	major_base=T	major_cov=296/297	major_frequency=8.594e-01	minor_base=C	minor_cov=39/58	new_cov=296/297	polymorphism_frequency=8.594e-01	polymorphism_score=159.1	prediction=consensus	ref_cov=39/58	total_cov=335/356
RA	373	.	Xen14_202	140	0	G	A	bias_e_value=632362	bias_p_value=0.127402	consensus_score=1455.8	fisher_strand_p_value=0.0278005	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=288/299	major_frequency=8.722e-01	minor_base=G	minor_cov=31/55	new_cov=288/299	polymorphism_frequency=8.722e-01	polymorphism_score=135.8	prediction=consensus	ref_cov=31/55	total_cov=319/354
RA	374	.	Xen14_202	191	0	G	T	bias_e_value=4268760	bias_p_value=0.860023	consensus_score=1953.8	fisher_strand_p_value=0.519971	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=327/341	major_frequency=8.709e-01	minor_base=G	minor_cov=52/47	new_cov=327/341	polymorphism_frequency=8.709e-01	polymorphism_score=237.2	prediction=consensus	ref_cov=52/47	total_cov=382/388
RA	375	.	Xen14_202	244	0	A	T	bias_e_value=4881250	bias_p_value=0.983421	consensus_score=2114.9	fisher_strand_p_value=0.823522	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=355/378	major_frequency=8.906e-01	minor_base=A	minor_cov=45/45	new_cov=355/378	polymorphism_frequency=8.906e-01	polymorphism_score=203.7	prediction=consensus	ref_cov=45/45	total_cov=400/423
RA	376	.	Xen14_202	259	0	A	G	bias_e_value=4394120	bias_p_value=0.88528	consensus_score=1653.2	fisher_strand_p_value=0.561004	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=310/350	major_frequency=8.883e-01	minor_base=A	minor_cov=42/41	new_cov=310/350	polymorphism_frequency=8.883e-01	polymorphism_score=123.6	prediction=consensus	ref_cov=42/41	total_cov=353/391
RA	377	.	Xen14_202	260	0	A	G	bias_e_value=4602890	bias_p_value=0.92734	consensus_score=1655.8	fisher_strand_p_value=0.643872	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=311/349	major_frequency=8.871e-01	minor_base=A	minor_cov=42/42	new_cov=311/349	polymorphism_frequency=8.871e-01	polymorphism_score=125.3	prediction=consensus	ref_cov=42/42	total_cov=353/391
RA	378	.	Xen14_202	266	0	C	T	bias_e_value=4385480	bias_p_value=0.883539	consensus_score=1645.0	fisher_strand_p_value=0.558006	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=311/348	major_frequency=8.893e-01	minor_base=C	minor_cov=42/40	new_cov=311/348	polymorphism_frequency=8.893e-01	polymorphism_score=120.3	prediction=consensus	ref_cov=42/40	total_cov=353/390
RA	379	.	Xen14_202	267	0	A	C	bias_e_value=4146940	bias_p_value=0.83548	consensus_score=1902.9	fisher_strand_p_value=0.484352	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=311/350	major_frequency=8.896e-01	minor_base=A	minor_cov=42/40	new_cov=311/350	polymorphism_frequency=8.896e-01	polymorphism_score=181.1	prediction=consensus	ref_cov=42/40	total_cov=353/390
RA	380	.	Xen14_202	294	0	C	A	bias_e_value=4963230	bias_p_value=0.999938	consensus_score=1862.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.988886	major_base=A	major_cov=350/333	major_frequency=8.940e-01	minor_base=C	minor_cov=42/39	new_cov=350/333	polymorphism_frequency=8.940e-01	polymorphism_score=191.5	prediction=consensus	ref_cov=42/39	total_cov=392/373
RA	381	.	Xen14_202	314	0	T	A	bias_e_value=3208780	bias_p_value=0.64647	consensus_score=1518.4	fisher_strand_p_value=0.287975	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=281/291	major_frequency=9.008e-01	minor_base=T	minor_cov=26/37	new_cov=281/291	polymorphism_frequency=9.008e-01	polymorphism_score=138.5	prediction=consensus	ref_cov=26/37	total_cov=307/328
RA	382	.	Xen14_202	320	0	A	G	bias_e_value=1523510	bias_p_value=0.30694	consensus_score=1195.3	fisher_strand_p_value=0.0900935	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=248/263	major_frequency=9.028e-01	minor_base=A	minor_cov=20/35	new_cov=248/263	polymorphism_frequency=9.028e-01	polymorphism_score=76.7	prediction=consensus	ref_cov=20/35	total_cov=268/298
RA	383	.	Xen14_202	323	0	G	A	bias_e_value=2164450	bias_p_value=0.43607	consensus_score=1185.1	fisher_strand_p_value=0.150793	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=246/263	major_frequency=9.057e-01	minor_base=G	minor_cov=20/33	new_cov=246/263	polymorphism_frequency=9.057e-01	polymorphism_score=74.0	prediction=consensus	ref_cov=20/33	total_cov=267/297
RA	384	.	Xen14_202	332	0	C	T	bias_e_value=2844060	bias_p_value=0.57299	consensus_score=1061.0	fisher_strand_p_value=0.233395	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=221/244	major_frequency=9.029e-01	minor_base=C	minor_cov=19/31	new_cov=221/244	polymorphism_frequency=9.029e-01	polymorphism_score=69.9	prediction=consensus	ref_cov=19/31	total_cov=240/276
RA	385	.	Xen14_202	335	0	T	A	bias_e_value=856995	bias_p_value=0.172658	consensus_score=1201.4	fisher_strand_p_value=0.0412182	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=221/243	major_frequency=9.116e-01	minor_base=T	minor_cov=14/31	new_cov=221/243	polymorphism_frequency=9.116e-01	polymorphism_score=94.0	prediction=consensus	ref_cov=14/31	total_cov=235/275
RA	386	.	Xen14_202	341	0	A	G	bias_e_value=1697250	bias_p_value=0.341944	consensus_score=895.9	fisher_strand_p_value=0.106801	frequency=1	ks_quality_p_value=0.984368	major_base=G	major_cov=173/227	major_frequency=9.029e-01	minor_base=A	minor_cov=13/30	new_cov=173/227	polymorphism_frequency=9.029e-01	polymorphism_score=60.2	prediction=consensus	ref_cov=13/30	total_cov=186/257
RA	387	.	Xen14_202	344	0	T	C	bias_e_value=2063360	bias_p_value=0.415704	consensus_score=901.1	fisher_strand_p_value=0.140496	frequency=1	ks_quality_p_value=0.998092	major_base=C	major_cov=173/226	major_frequency=9.048e-01	minor_base=T	minor_cov=13/29	new_cov=173/226	polymorphism_frequency=9.048e-01	polymorphism_score=55.2	prediction=consensus	ref_cov=13/29	total_cov=186/255
RA	388	.	Xen14_205	259	0	T	A	bias_e_value=379160	bias_p_value=0.0763891	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1658.9	fisher_strand_p_value=0.0159007	frequency=2.375e-01	ks_quality_p_value=0.919372	major_base=T	major_cov=285/373	major_frequency=7.625e-01	minor_base=A	minor_cov=109/96	new_cov=109/96	polymorphism_frequency=2.375e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=285/373	total_cov=395/469
RA	389	.	Xen14_205	264	0	A	T	bias_e_value=226611	bias_p_value=0.0456551	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1612.9	fisher_strand_p_value=0.00782128	frequency=2.409e-01	ks_quality_p_value=0.997195	major_base=A	major_cov=286/357	major_frequency=7.591e-01	minor_base=T	minor_cov=113/91	new_cov=113/91	polymorphism_frequency=2.409e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=286/357	total_cov=400/450
RA	390	.	Xen14_23	57348	0	T	C	bias_e_value=5.17636	bias_p_value=1.04288e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=155.6	fisher_strand_p_value=5.91069e-08	frequency=2.277e-01	ks_quality_p_value=1	major_base=T	major_cov=47/31	major_frequency=7.723e-01	minor_base=C	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.277e-01	polymorphism_score=18.6	prediction=polymorphism	ref_cov=47/31	total_cov=47/54
RA	391	.	Xen14_24	9196	0	G	C	bias_e_value=255.83	bias_p_value=5.15419e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=148.0	fisher_strand_p_value=3.82532e-06	frequency=2.222e-01	ks_quality_p_value=1	major_base=G	major_cov=37/26	major_frequency=7.778e-01	minor_base=C	minor_cov=0/18	new_cov=0/18	polymorphism_frequency=2.222e-01	polymorphism_score=22.3	prediction=polymorphism	ref_cov=37/26	total_cov=37/46
RA	392	.	Xen14_24	9197	0	T	C	bias_e_value=136.941	bias_p_value=2.75895e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=123.5	fisher_strand_p_value=1.95011e-06	frequency=2.289e-01	ks_quality_p_value=1	major_base=T	major_cov=37/27	major_frequency=7.711e-01	minor_base=C	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.289e-01	polymorphism_score=13.9	prediction=polymorphism	ref_cov=37/27	total_cov=37/46
RA	393	.	Xen14_25	61736	0	T	C	bias_e_value=1348.83	bias_p_value=0.000271748	consensus_reject=FREQUENCY_CUTOFF	consensus_score=31.6	fisher_strand_p_value=2.32912e-05	frequency=3.333e-01	ks_quality_p_value=1	major_base=T	major_cov=19/11	major_frequency=6.667e-01	minor_base=C	minor_cov=0/15	new_cov=0/15	polymorphism_frequency=3.333e-01	polymorphism_score=19.8	prediction=polymorphism	ref_cov=19/11	total_cov=19/26
RA	394	.	Xen14_27	69396	0	T	C	bias_e_value=243.894	bias_p_value=4.91372e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=144.6	fisher_strand_p_value=3.63294e-06	frequency=2.128e-01	ks_quality_p_value=1	major_base=T	major_cov=40/34	major_frequency=7.872e-01	minor_base=C	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.128e-01	polymorphism_score=12.5	prediction=polymorphism	ref_cov=40/34	total_cov=40/54
RA	395	.	Xen14_27	70010	0	A	T	bias_e_value=4767670	bias_p_value=0.960539	consensus_reject=FREQUENCY_CUTOFF	consensus_score=241.4	fisher_strand_p_value=0.732556	frequency=3.012e-01	ks_quality_p_value=1	major_base=A	major_cov=69/47	major_frequency=6.988e-01	minor_base=T	minor_cov=28/22	new_cov=28/22	polymorphism_frequency=3.012e-01	polymorphism_score=135.3	prediction=polymorphism	ref_cov=69/47	total_cov=97/69
RA	396	.	Xen14_27	70100	0	C	T	bias_e_value=4929010	bias_p_value=0.993044	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=1.1	fisher_strand_p_value=0.884395	frequency=5.079e-01	ks_quality_p_value=1	major_base=T	major_cov=43/53	major_frequency=5.079e-01	minor_base=C	minor_cov=43/50	new_cov=43/53	polymorphism_frequency=5.079e-01	polymorphism_score=210.0	prediction=polymorphism	ref_cov=43/50	total_cov=86/103
RA	397	.	Xen14_27	70319	0	C	T	bias_e_value=3306400	bias_p_value=0.666137	consensus_reject=FREQUENCY_CUTOFF	consensus_score=42.4	fisher_strand_p_value=0.56144	frequency=4.555e-01	ks_quality_p_value=0.541697	major_base=C	major_cov=53/51	major_frequency=5.445e-01	minor_base=T	minor_cov=40/47	new_cov=40/47	polymorphism_frequency=4.555e-01	polymorphism_score=192.6	prediction=polymorphism	ref_cov=53/51	total_cov=93/99
RA	398	.	Xen14_27	70334	0	A	G	bias_e_value=2121660	bias_p_value=0.427449	consensus_reject=FREQUENCY_CUTOFF	consensus_score=29.5	fisher_strand_p_value=0.146272	frequency=5.291e-01	ks_quality_p_value=1	major_base=G	major_cov=44/56	major_frequency=5.291e-01	minor_base=A	minor_cov=49/40	new_cov=44/56	polymorphism_frequency=5.291e-01	polymorphism_score=198.1	prediction=polymorphism	ref_cov=49/40	total_cov=93/96
RA	399	.	Xen14_27	70510	0	A	G	bias_e_value=709424	bias_p_value=0.142927	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=0.4	fisher_strand_p_value=0.0656994	frequency=5.050e-01	ks_quality_p_value=0.49053	major_base=G	major_cov=58/43	major_frequency=5.050e-01	minor_base=A	minor_cov=43/56	new_cov=58/43	polymorphism_frequency=5.050e-01	polymorphism_score=225.9	prediction=polymorphism	ref_cov=43/56	total_cov=101/99
RA	400	.	Xen14_27	70545	0	G	T	bias_e_value=2694750	bias_p_value=0.54291	consensus_reject=FREQUENCY_CUTOFF	consensus_score=80.6	fisher_strand_p_value=0.213332	frequency=4.571e-01	ks_quality_p_value=1	major_base=G	major_cov=55/59	major_frequency=5.429e-01	minor_base=T	minor_cov=55/41	new_cov=55/41	polymorphism_frequency=4.571e-01	polymorphism_score=279.6	prediction=polymorphism	ref_cov=55/59	total_cov=110/100
RA	401	.	Xen14_27	70578	0	C	T	bias_e_value=4963500	bias_p_value=0.999993	consensus_reject=FREQUENCY_CUTOFF	consensus_score=42.9	fisher_strand_p_value=1	frequency=4.612e-01	ks_quality_p_value=0.996352	major_base=C	major_cov=53/58	major_frequency=5.388e-01	minor_base=T	minor_cov=46/49	new_cov=46/49	polymorphism_frequency=4.612e-01	polymorphism_score=211.0	prediction=polymorphism	ref_cov=53/58	total_cov=99/107
RA	402	.	Xen14_27	70598	0	G	T	bias_e_value=4899040	bias_p_value=0.987005	consensus_reject=FREQUENCY_CUTOFF	consensus_score=60.0	fisher_strand_p_value=0.889343	frequency=4.641e-01	ks_quality_p_value=0.948091	major_base=G	major_cov=50/62	major_frequency=5.359e-01	minor_base=T	minor_cov=42/55	new_cov=42/55	polymorphism_frequency=4.641e-01	polymorphism_score=286.6	prediction=polymorphism	ref_cov=50/62	total_cov=92/117
RA	403	.	Xen14_27	70661	0	C	T	bias_e_value=3753670	bias_p_value=0.756248	consensus_reject=FREQUENCY_CUTOFF	consensus_score=57.6	fisher_strand_p_value=0.388961	frequency=5.533e-01	ks_quality_p_value=1	major_base=T	major_cov=46/63	major_frequency=5.533e-01	minor_base=C	minor_cov=43/45	new_cov=46/63	polymorphism_frequency=5.533e-01	polymorphism_score=191.0	prediction=polymorphism	ref_cov=43/45	total_cov=89/108
RA	404	.	Xen14_27	70693	0	T	A	bias_e_value=2964780	bias_p_value=0.597313	consensus_reject=FREQUENCY_CUTOFF	consensus_score=112.5	fisher_strand_p_value=0.367141	frequency=5.860e-01	ks_quality_p_value=0.682392	major_base=A	major_cov=43/66	major_frequency=5.860e-01	minor_base=T	minor_cov=36/41	new_cov=43/66	polymorphism_frequency=5.860e-01	polymorphism_score=224.0	prediction=polymorphism	ref_cov=36/41	total_cov=79/108
RA	405	.	Xen14_27	70865	0	T	C	bias_e_value=4785280	bias_p_value=0.964086	consensus_reject=FREQUENCY_CUTOFF	consensus_score=89.4	fisher_strand_p_value=0.744252	frequency=5.963e-01	ks_quality_p_value=1	major_base=C	major_cov=37/59	major_frequency=5.963e-01	minor_base=T	minor_cov=27/38	new_cov=37/59	polymorphism_frequency=5.963e-01	polymorphism_score=135.0	prediction=polymorphism	ref_cov=27/38	total_cov=64/97
RA	406	.	Xen14_27	71183	0	A	G	bias_e_value=554405	bias_p_value=0.111695	consensus_reject=FREQUENCY_CUTOFF	consensus_score=55.6	fisher_strand_p_value=1	frequency=6.000e-01	ks_quality_p_value=0.0235141	major_base=G	major_cov=31/35	major_frequency=6.000e-01	minor_base=A	minor_cov=20/24	new_cov=31/35	polymorphism_frequency=6.000e-01	polymorphism_score=92.4	prediction=polymorphism	ref_cov=20/24	total_cov=51/59
RA	407	.	Xen14_28	78	0	T	C	bias_e_value=3750250	bias_p_value=0.75556	consensus_reject=FREQUENCY_CUTOFF	consensus_score=180.7	fisher_strand_p_value=1	frequency=7.826e-01	ks_quality_p_value=0.388233	major_base=C	major_cov=35/55	major_frequency=7.826e-01	minor_base=T	minor_cov=10/15	new_cov=35/55	polymorphism_frequency=7.826e-01	polymorphism_score=41.8	prediction=polymorphism	ref_cov=10/15	total_cov=45/70
RA	408	.	Xen14_28	132	0	G	C	bias_e_value=367890	bias_p_value=0.0741185	consensus_reject=FREQUENCY_CUTOFF	consensus_score=400.2	fisher_strand_p_value=0.0579591	frequency=7.488e-01	ks_quality_p_value=0.242993	major_base=C	major_cov=74/84	major_frequency=7.488e-01	minor_base=G	minor_cov=33/20	new_cov=74/84	polymorphism_frequency=7.488e-01	polymorphism_score=156.0	prediction=polymorphism	ref_cov=33/20	total_cov=108/104
RA	409	.	Xen14_28	207	0	T	C	bias_e_value=3798890	bias_p_value=0.76536	consensus_reject=FREQUENCY_CUTOFF	consensus_score=336.3	fisher_strand_p_value=0.399292	frequency=7.266e-01	ks_quality_p_value=0.998618	major_base=C	major_cov=103/83	major_frequency=7.266e-01	minor_base=T	minor_cov=43/27	new_cov=103/83	polymorphism_frequency=7.266e-01	polymorphism_score=132.9	prediction=polymorphism	ref_cov=43/27	total_cov=146/110
RA	410	.	Xen14_28	233	0	A	G	bias_e_value=1837950	bias_p_value=0.37029	consensus_reject=FREQUENCY_CUTOFF	consensus_score=300.6	fisher_strand_p_value=0.124391	frequency=7.092e-01	ks_quality_p_value=0.949058	major_base=G	major_cov=92/86	major_frequency=7.092e-01	minor_base=A	minor_cov=46/27	new_cov=92/86	polymorphism_frequency=7.092e-01	polymorphism_score=143.8	prediction=polymorphism	ref_cov=46/27	total_cov=138/113
RA	411	.	Xen14_28	252	0	C	T	bias_e_value=3024220	bias_p_value=0.609287	consensus_reject=FREQUENCY_CUTOFF	consensus_score=252.6	fisher_strand_p_value=0.259309	frequency=6.894e-01	ks_quality_p_value=0.999942	major_base=T	major_cov=79/83	major_frequency=6.894e-01	minor_base=C	minor_cov=42/31	new_cov=79/83	polymorphism_frequency=6.894e-01	polymorphism_score=143.8	prediction=polymorphism	ref_cov=42/31	total_cov=121/114
RA	412	.	Xen14_28	276	0	T	C	bias_e_value=4452920	bias_p_value=0.897126	consensus_reject=FREQUENCY_CUTOFF	consensus_score=255.2	fisher_strand_p_value=0.582182	frequency=6.792e-01	ks_quality_p_value=1	major_base=C	major_cov=76/87	major_frequency=6.792e-01	minor_base=T	minor_cov=39/38	new_cov=76/87	polymorphism_frequency=6.792e-01	polymorphism_score=151.3	prediction=polymorphism	ref_cov=39/38	total_cov=115/125
RA	413	.	Xen14_29	31773	0	C	G	bias_e_value=0.125202	bias_p_value=2.52243e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=60.5	fisher_strand_p_value=1.1696e-09	frequency=2.973e-01	ks_quality_p_value=1	major_base=C	major_cov=0/26	major_frequency=7.027e-01	minor_base=G	minor_cov=11/0	new_cov=11/0	polymorphism_frequency=2.973e-01	polymorphism_score=18.5	prediction=polymorphism	ref_cov=0/26	total_cov=13/26
RA	414	.	Xen14_29	61551	1	.	T	bias_e_value=4963540	bias_p_value=1	consensus_score=113.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=20/20	major_frequency=8.511e-01	minor_base=.	minor_cov=3/4	new_cov=20/20	polymorphism_frequency=8.511e-01	polymorphism_score=16.9	prediction=consensus	ref_cov=3/4	total_cov=23/24
RA	415	.	Xen14_3	40725	0	C	G	bias_e_value=0.000481206	bias_p_value=9.69482e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=219.2	fisher_strand_p_value=3.54263e-12	frequency=2.437e-01	ks_quality_p_value=1	major_base=C	major_cov=28/62	major_frequency=7.563e-01	minor_base=G	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=2.437e-01	polymorphism_score=46.4	prediction=polymorphism	ref_cov=28/62	total_cov=61/62
RA	416	.	Xen14_3	81286	0	A	C	bias_e_value=0.0130369	bias_p_value=2.62653e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=194.2	fisher_strand_p_value=1.09746e-10	frequency=2.692e-01	ks_quality_p_value=1	major_base=A	major_cov=26/50	major_frequency=7.308e-01	minor_base=C	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=2.692e-01	polymorphism_score=19.6	prediction=polymorphism	ref_cov=26/50	total_cov=56/50
RA	417	.	Xen14_3	84467	0	C	G	bias_e_value=0.0102232	bias_p_value=2.05965e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=144.2	fisher_strand_p_value=8.51571e-11	frequency=2.532e-01	ks_quality_p_value=1	major_base=C	major_cov=12/47	major_frequency=7.468e-01	minor_base=G	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.532e-01	polymorphism_score=23.0	prediction=polymorphism	ref_cov=12/47	total_cov=34/47
RA	418	.	Xen14_3	166152	0	T	C	bias_e_value=903897	bias_p_value=0.182107	consensus_reject=FREQUENCY_CUTOFF	consensus_score=184.4	fisher_strand_p_value=0.0442149	frequency=2.321e-01	ks_quality_p_value=1	major_base=T	major_cov=53/33	major_frequency=7.679e-01	minor_base=C	minor_cov=10/16	new_cov=10/16	polymorphism_frequency=2.321e-01	polymorphism_score=44.2	prediction=polymorphism	ref_cov=53/33	total_cov=63/49
RA	419	.	Xen14_31	58729	0	A	G	bias_e_value=273214	bias_p_value=0.0550442	consensus_reject=FREQUENCY_CUTOFF	consensus_score=84.7	fisher_strand_p_value=0.137687	frequency=3.721e-01	ks_quality_p_value=0.0710433	major_base=A	major_cov=44/37	major_frequency=6.279e-01	minor_base=G	minor_cov=33/15	new_cov=33/15	polymorphism_frequency=3.721e-01	polymorphism_score=98.1	prediction=polymorphism	ref_cov=44/37	total_cov=77/52
RA	420	.	Xen14_31	58747	0	C	A	bias_e_value=4627100	bias_p_value=0.932218	consensus_reject=FREQUENCY_CUTOFF	consensus_score=152.1	fisher_strand_p_value=0.655175	frequency=2.755e-01	ks_quality_p_value=1	major_base=C	major_cov=38/33	major_frequency=7.245e-01	minor_base=A	minor_cov=16/11	new_cov=16/11	polymorphism_frequency=2.755e-01	polymorphism_score=64.8	prediction=polymorphism	ref_cov=38/33	total_cov=54/44
RA	421	.	Xen14_31	58754	0	G	A	bias_e_value=4090470	bias_p_value=0.824104	consensus_reject=FREQUENCY_CUTOFF	consensus_score=99.2	fisher_strand_p_value=1	frequency=2.738e-01	ks_quality_p_value=0.469	major_base=G	major_cov=36/25	major_frequency=7.262e-01	minor_base=A	minor_cov=14/9	new_cov=14/9	polymorphism_frequency=2.738e-01	polymorphism_score=37.1	prediction=polymorphism	ref_cov=36/25	total_cov=50/34
RA	422	.	Xen14_32	20630	0	C	G	bias_e_value=106.193	bias_p_value=2.13945e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=52.3	fisher_strand_p_value=1.48356e-06	frequency=3.488e-01	ks_quality_p_value=1	major_base=C	major_cov=7/21	major_frequency=6.512e-01	minor_base=G	minor_cov=15/0	new_cov=15/0	polymorphism_frequency=3.488e-01	polymorphism_score=19.9	prediction=polymorphism	ref_cov=7/21	total_cov=28/21
RA	423	.	Xen14_36	51916	0	A	G	bias_e_value=13.4977	bias_p_value=2.71937e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=39.5	fisher_strand_p_value=1.42039e-06	frequency=3.455e-01	ks_quality_p_value=0.115152	major_base=A	major_cov=23/13	major_frequency=6.545e-01	minor_base=G	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=3.455e-01	polymorphism_score=35.5	prediction=polymorphism	ref_cov=23/13	total_cov=23/32
RA	424	.	Xen14_37	179	0	C	T	bias_e_value=3932340	bias_p_value=0.792245	consensus_reject=FREQUENCY_CUTOFF	consensus_score=69.7	fisher_strand_p_value=1	frequency=3.333e-01	ks_quality_p_value=0.429216	major_base=C	major_cov=23/25	major_frequency=6.667e-01	minor_base=T	minor_cov=11/13	new_cov=11/13	polymorphism_frequency=3.333e-01	polymorphism_score=45.1	prediction=polymorphism	ref_cov=23/25	total_cov=35/38
RA	425	.	Xen14_37	190	0	T	C	bias_e_value=3286660	bias_p_value=0.662162	consensus_reject=FREQUENCY_CUTOFF	consensus_score=107.5	fisher_strand_p_value=0.300806	frequency=2.632e-01	ks_quality_p_value=1	major_base=T	major_cov=31/25	major_frequency=7.368e-01	minor_base=C	minor_cov=8/12	new_cov=8/12	polymorphism_frequency=2.632e-01	polymorphism_score=33.2	prediction=polymorphism	ref_cov=31/25	total_cov=39/37
RA	426	.	Xen14_37	195	0	T	G	bias_e_value=3680220	bias_p_value=0.741451	consensus_reject=FREQUENCY_CUTOFF	consensus_score=159.6	fisher_strand_p_value=0.783895	frequency=2.267e-01	ks_quality_p_value=0.476615	major_base=T	major_cov=31/27	major_frequency=7.733e-01	minor_base=G	minor_cov=8/9	new_cov=8/9	polymorphism_frequency=2.267e-01	polymorphism_score=42.3	prediction=polymorphism	ref_cov=31/27	total_cov=39/36
RA	427	.	Xen14_37	196	0	T	A	bias_e_value=853553	bias_p_value=0.171965	consensus_reject=FREQUENCY_CUTOFF	consensus_score=156.1	fisher_strand_p_value=0.772313	frequency=2.083e-01	ks_quality_p_value=0.0530885	major_base=T	major_cov=31/26	major_frequency=7.917e-01	minor_base=A	minor_cov=7/8	new_cov=7/8	polymorphism_frequency=2.083e-01	polymorphism_score=34.2	prediction=polymorphism	ref_cov=31/26	total_cov=39/36
RA	428	.	Xen14_38	6665	0	C	T	bias_e_value=3.068	bias_p_value=6.18108e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=178.2	fisher_strand_p_value=3.39659e-08	frequency=2.241e-01	ks_quality_p_value=1	major_base=C	major_cov=40/50	major_frequency=7.759e-01	minor_base=T	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.241e-01	polymorphism_score=15.4	prediction=polymorphism	ref_cov=40/50	total_cov=70/51
RA	429	.	Xen14_38	15362	0	T	A	bias_e_value=3357630	bias_p_value=0.676459	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=8.3	fisher_strand_p_value=0.312908	frequency=4.900e-01	ks_quality_p_value=1	major_base=T	major_cov=44/58	major_frequency=5.100e-01	minor_base=A	minor_cov=35/63	new_cov=35/63	polymorphism_frequency=4.900e-01	polymorphism_score=296.3	prediction=polymorphism	ref_cov=44/58	total_cov=79/121
RA	430	.	Xen14_38	15487	0	C	A	bias_e_value=2649250	bias_p_value=0.533742	consensus_reject=FREQUENCY_CUTOFF	consensus_score=76.5	fisher_strand_p_value=0.391511	frequency=5.678e-01	ks_quality_p_value=0.529873	major_base=A	major_cov=56/57	major_frequency=5.678e-01	minor_base=C	minor_cov=37/49	new_cov=56/57	polymorphism_frequency=5.678e-01	polymorphism_score=261.4	prediction=polymorphism	ref_cov=37/49	total_cov=93/106
RA	431	.	Xen14_38	15801	0	A	G	bias_e_value=4711890	bias_p_value=0.9493	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=4.5	fisher_strand_p_value=0.70429	frequency=4.901e-01	ks_quality_p_value=0.99243	major_base=A	major_cov=70/59	major_frequency=5.099e-01	minor_base=G	minor_cov=71/53	new_cov=71/53	polymorphism_frequency=4.901e-01	polymorphism_score=285.6	prediction=polymorphism	ref_cov=70/59	total_cov=141/112
RA	432	.	Xen14_38	15816	0	A	T	bias_e_value=3499380	bias_p_value=0.705017	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-0.5	fisher_strand_p_value=0.363568	frequency=5.042e-01	ks_quality_p_value=0.930652	major_base=T	major_cov=67/53	major_frequency=5.042e-01	minor_base=A	minor_cov=58/60	new_cov=67/53	polymorphism_frequency=5.042e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=58/60	total_cov=125/113
RA	433	.	Xen14_38	15848	0	G	A	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=27.8	fisher_strand_p_value=1	frequency=4.777e-01	ks_quality_p_value=1	major_base=G	major_cov=57/60	major_frequency=5.223e-01	minor_base=A	minor_cov=53/54	new_cov=53/54	polymorphism_frequency=4.777e-01	polymorphism_score=240.1	prediction=polymorphism	ref_cov=57/60	total_cov=110/114
RA	434	.	Xen14_38	15864	0	C	T	bias_e_value=4829320	bias_p_value=0.97296	consensus_reject=FREQUENCY_CUTOFF	consensus_score=59.4	fisher_strand_p_value=0.776647	frequency=4.478e-01	ks_quality_p_value=1	major_base=C	major_cov=56/55	major_frequency=5.522e-01	minor_base=T	minor_cov=48/42	new_cov=48/42	polymorphism_frequency=4.478e-01	polymorphism_score=196.5	prediction=polymorphism	ref_cov=56/55	total_cov=104/98
RA	435	.	Xen14_38	15866	0	T	G	bias_e_value=4668520	bias_p_value=0.940563	consensus_reject=FREQUENCY_CUTOFF	consensus_score=85.3	fisher_strand_p_value=0.67566	frequency=4.327e-01	ks_quality_p_value=1	major_base=T	major_cov=59/59	major_frequency=5.673e-01	minor_base=G	minor_cov=48/42	new_cov=48/42	polymorphism_frequency=4.327e-01	polymorphism_score=272.4	prediction=polymorphism	ref_cov=59/59	total_cov=107/101
RA	436	.	Xen14_38	15869	0	A	G	bias_e_value=4658820	bias_p_value=0.938609	consensus_reject=FREQUENCY_CUTOFF	consensus_score=72.9	fisher_strand_p_value=0.67566	frequency=4.327e-01	ks_quality_p_value=0.992693	major_base=A	major_cov=59/59	major_frequency=5.673e-01	minor_base=G	minor_cov=48/42	new_cov=48/42	polymorphism_frequency=4.327e-01	polymorphism_score=199.0	prediction=polymorphism	ref_cov=59/59	total_cov=107/101
RA	437	.	Xen14_38	15879	0	C	T	bias_e_value=4707740	bias_p_value=0.948465	consensus_reject=FREQUENCY_CUTOFF	consensus_score=59.9	fisher_strand_p_value=0.696636	frequency=4.557e-01	ks_quality_p_value=1	major_base=C	major_cov=62/67	major_frequency=5.443e-01	minor_base=T	minor_cov=55/53	new_cov=55/53	polymorphism_frequency=4.557e-01	polymorphism_score=237.9	prediction=polymorphism	ref_cov=62/67	total_cov=117/120
RA	438	.	Xen14_38	16010	0	C	T	bias_e_value=1155830	bias_p_value=0.232863	consensus_reject=FREQUENCY_CUTOFF	consensus_score=54.9	fisher_strand_p_value=0.0614488	frequency=4.660e-01	ks_quality_p_value=1	major_base=C	major_cov=34/76	major_frequency=5.340e-01	minor_base=T	minor_cov=42/54	new_cov=42/54	polymorphism_frequency=4.660e-01	polymorphism_score=215.3	prediction=polymorphism	ref_cov=34/76	total_cov=76/130
RA	439	.	Xen14_38	16016	0	T	C	bias_e_value=42312.9	bias_p_value=0.00852474	consensus_reject=FREQUENCY_CUTOFF	consensus_score=30.8	fisher_strand_p_value=0.0021014	frequency=4.899e-01	ks_quality_p_value=0.518647	major_base=T	major_cov=28/73	major_frequency=5.101e-01	minor_base=C	minor_cov=48/49	new_cov=48/49	polymorphism_frequency=4.899e-01	polymorphism_score=219.4	prediction=polymorphism	ref_cov=28/73	total_cov=76/122
RA	440	.	Xen14_38	16020	0	G	A	bias_e_value=151350	bias_p_value=0.0304925	consensus_reject=FREQUENCY_CUTOFF	consensus_score=31.2	fisher_strand_p_value=0.0048121	frequency=4.948e-01	ks_quality_p_value=1	major_base=G	major_cov=28/69	major_frequency=5.052e-01	minor_base=A	minor_cov=47/48	new_cov=47/48	polymorphism_frequency=4.948e-01	polymorphism_score=214.8	prediction=polymorphism	ref_cov=28/69	total_cov=75/117
RA	441	.	Xen14_38	16025	0	G	T	bias_e_value=87663.7	bias_p_value=0.0176615	consensus_reject=FREQUENCY_CUTOFF	consensus_score=50.0	fisher_strand_p_value=0.00487187	frequency=5.134e-01	ks_quality_p_value=0.519421	major_base=T	major_cov=48/48	major_frequency=5.134e-01	minor_base=G	minor_cov=27/64	new_cov=48/48	polymorphism_frequency=5.134e-01	polymorphism_score=282.6	prediction=polymorphism	ref_cov=27/64	total_cov=75/112
RA	442	.	Xen14_38	16124	0	G	A	bias_e_value=305847	bias_p_value=0.0616188	consensus_reject=FREQUENCY_CUTOFF	consensus_score=155.1	fisher_strand_p_value=0.0112245	frequency=3.000e-01	ks_quality_p_value=1	major_base=G	major_cov=37/40	major_frequency=7.000e-01	minor_base=A	minor_cov=25/8	new_cov=25/8	polymorphism_frequency=3.000e-01	polymorphism_score=59.1	prediction=polymorphism	ref_cov=37/40	total_cov=62/48
RA	443	.	Xen14_38	48227	0	A	G	bias_e_value=3394790	bias_p_value=0.683946	consensus_reject=FREQUENCY_CUTOFF	consensus_score=133.0	fisher_strand_p_value=0.6042	frequency=3.377e-01	ks_quality_p_value=0.52865	major_base=A	major_cov=47/53	major_frequency=6.623e-01	minor_base=G	minor_cov=21/30	new_cov=21/30	polymorphism_frequency=3.377e-01	polymorphism_score=102.1	prediction=polymorphism	ref_cov=47/53	total_cov=68/83
RA	444	.	Xen14_38	48325	0	T	C	bias_e_value=1087030	bias_p_value=0.219003	consensus_reject=FREQUENCY_CUTOFF	consensus_score=197.6	fisher_strand_p_value=0.0565519	frequency=6.646e-01	ks_quality_p_value=0.999999	major_base=C	major_cov=133/81	major_frequency=6.646e-01	minor_base=T	minor_cov=55/53	new_cov=133/81	polymorphism_frequency=6.646e-01	polymorphism_score=220.7	prediction=polymorphism	ref_cov=55/53	total_cov=188/135
RA	445	.	Xen14_38	48337	0	A	G	bias_e_value=4646950	bias_p_value=0.936217	consensus_reject=FREQUENCY_CUTOFF	consensus_score=719.2	fisher_strand_p_value=0.667699	frequency=7.835e-01	ks_quality_p_value=0.995657	major_base=G	major_cov=212/186	major_frequency=7.835e-01	minor_base=A	minor_cov=56/54	new_cov=212/186	polymorphism_frequency=7.835e-01	polymorphism_score=202.4	prediction=polymorphism	ref_cov=56/54	total_cov=268/241
RA	446	.	Xen14_38	48371	0	G	T	bias_e_value=2276020	bias_p_value=0.458549	consensus_score=2174.7	fisher_strand_p_value=0.162926	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=359/432	major_frequency=8.721e-01	minor_base=G	minor_cov=61/55	new_cov=359/432	polymorphism_frequency=8.721e-01	polymorphism_score=284.3	prediction=consensus	ref_cov=61/55	total_cov=424/487
RA	447	.	Xen14_39	31639	0	A	G	bias_e_value=565.054	bias_p_value=0.000113841	consensus_reject=FREQUENCY_CUTOFF	consensus_score=88.0	fisher_strand_p_value=9.02379e-06	frequency=2.273e-01	ks_quality_p_value=1	major_base=A	major_cov=19/32	major_frequency=7.727e-01	minor_base=G	minor_cov=15/0	new_cov=15/0	polymorphism_frequency=2.273e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=19/32	total_cov=34/32
RA	448	.	Xen14_43	39111	0	A	G	bias_e_value=1418340	bias_p_value=0.285751	consensus_reject=FREQUENCY_CUTOFF	consensus_score=149.3	fisher_strand_p_value=0.848931	frequency=3.125e-01	ks_quality_p_value=0.0959646	major_base=A	major_cov=45/43	major_frequency=6.875e-01	minor_base=G	minor_cov=19/21	new_cov=19/21	polymorphism_frequency=3.125e-01	polymorphism_score=79.1	prediction=polymorphism	ref_cov=45/43	total_cov=64/64
RA	449	.	Xen14_43	39114	0	G	A	bias_e_value=2574080	bias_p_value=0.518599	consensus_reject=FREQUENCY_CUTOFF	consensus_score=150.0	fisher_strand_p_value=0.848931	frequency=3.150e-01	ks_quality_p_value=0.233191	major_base=G	major_cov=44/43	major_frequency=6.850e-01	minor_base=A	minor_cov=19/21	new_cov=19/21	polymorphism_frequency=3.150e-01	polymorphism_score=78.4	prediction=polymorphism	ref_cov=44/43	total_cov=63/64
RA	450	.	Xen14_43	39195	0	G	A	bias_e_value=3278110	bias_p_value=0.660438	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-1.0	fisher_strand_p_value=0.53493	frequency=5.333e-01	ks_quality_p_value=0.559652	major_base=A	major_cov=40/48	major_frequency=5.333e-01	minor_base=G	minor_cov=39/38	new_cov=40/48	polymorphism_frequency=5.333e-01	polymorphism_score=171.8	prediction=polymorphism	ref_cov=39/38	total_cov=79/86
RA	451	.	Xen14_43	39246	0	A	G	bias_e_value=257062	bias_p_value=0.0517901	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=8.1	fisher_strand_p_value=0.0264401	frequency=5.220e-01	ks_quality_p_value=0.34357	major_base=G	major_cov=34/49	major_frequency=5.220e-01	minor_base=A	minor_cov=45/31	new_cov=34/49	polymorphism_frequency=5.220e-01	polymorphism_score=167.7	prediction=polymorphism	ref_cov=45/31	total_cov=79/80
RA	452	.	Xen14_43	39249	0	C	G	bias_e_value=109675	bias_p_value=0.0220961	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=2.6	fisher_strand_p_value=0.00712317	frequency=5.253e-01	ks_quality_p_value=0.461814	major_base=G	major_cov=34/49	major_frequency=5.253e-01	minor_base=C	minor_cov=47/28	new_cov=34/49	polymorphism_frequency=5.253e-01	polymorphism_score=248.7	prediction=polymorphism	ref_cov=47/28	total_cov=81/77
RA	453	.	Xen14_43	39258	0	T	A	bias_e_value=34297.5	bias_p_value=0.00690989	consensus_reject=FREQUENCY_CUTOFF	consensus_score=20.0	fisher_strand_p_value=0.00145296	frequency=5.283e-01	ks_quality_p_value=0.589898	major_base=A	major_cov=32/52	major_frequency=5.283e-01	minor_base=T	minor_cov=48/27	new_cov=32/52	polymorphism_frequency=5.283e-01	polymorphism_score=224.4	prediction=polymorphism	ref_cov=48/27	total_cov=80/79
RA	454	.	Xen14_43	39261	0	G	A	bias_e_value=92646.6	bias_p_value=0.0186654	consensus_reject=FREQUENCY_CUTOFF	consensus_score=10.3	fisher_strand_p_value=0.00269937	frequency=5.185e-01	ks_quality_p_value=1	major_base=A	major_cov=32/52	major_frequency=5.185e-01	minor_base=G	minor_cov=49/29	new_cov=32/52	polymorphism_frequency=5.185e-01	polymorphism_score=174.3	prediction=polymorphism	ref_cov=49/29	total_cov=81/81
RA	455	.	Xen14_43	39264	0	C	A	bias_e_value=48048.8	bias_p_value=0.00968035	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-0.5	fisher_strand_p_value=0.00269937	frequency=5.217e-01	ks_quality_p_value=0.467207	major_base=A	major_cov=32/52	major_frequency=5.217e-01	minor_base=C	minor_cov=48/29	new_cov=32/52	polymorphism_frequency=5.217e-01	polymorphism_score=241.8	prediction=polymorphism	ref_cov=48/29	total_cov=80/81
RA	456	.	Xen14_43	39291	0	G	A	bias_e_value=69240.6	bias_p_value=0.0139499	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.8	fisher_strand_p_value=0.0455013	frequency=4.583e-01	ks_quality_p_value=0.0422649	major_base=G	major_cov=51/40	major_frequency=5.417e-01	minor_base=A	minor_cov=31/46	new_cov=31/46	polymorphism_frequency=4.583e-01	polymorphism_score=171.6	prediction=polymorphism	ref_cov=51/40	total_cov=82/86
RA	457	.	Xen14_43	39293	0	C	A	bias_e_value=134475	bias_p_value=0.0270925	consensus_reject=FREQUENCY_CUTOFF	consensus_score=51.6	fisher_strand_p_value=0.043595	frequency=4.611e-01	ks_quality_p_value=0.0959527	major_base=C	major_cov=51/39	major_frequency=5.389e-01	minor_base=A	minor_cov=31/46	new_cov=31/46	polymorphism_frequency=4.611e-01	polymorphism_score=228.5	prediction=polymorphism	ref_cov=51/39	total_cov=82/85
RA	458	.	Xen14_43	39296	0	C	T	bias_e_value=211929	bias_p_value=0.0426971	consensus_reject=FREQUENCY_CUTOFF	consensus_score=45.1	fisher_strand_p_value=0.014142	frequency=4.503e-01	ks_quality_p_value=0.508757	major_base=C	major_cov=56/38	major_frequency=5.497e-01	minor_base=T	minor_cov=31/46	new_cov=31/46	polymorphism_frequency=4.503e-01	polymorphism_score=168.0	prediction=polymorphism	ref_cov=56/38	total_cov=87/84
RA	459	.	Xen14_43	39300	0	G	A	bias_e_value=369125	bias_p_value=0.0743674	consensus_reject=FREQUENCY_CUTOFF	consensus_score=45.4	fisher_strand_p_value=0.014142	frequency=4.503e-01	ks_quality_p_value=1	major_base=G	major_cov=56/38	major_frequency=5.497e-01	minor_base=A	minor_cov=31/46	new_cov=31/46	polymorphism_frequency=4.503e-01	polymorphism_score=170.4	prediction=polymorphism	ref_cov=56/38	total_cov=87/84
RA	460	.	Xen14_43	39312	0	G	A	bias_e_value=277131	bias_p_value=0.0558334	consensus_reject=FREQUENCY_CUTOFF	consensus_score=37.8	fisher_strand_p_value=0.00995263	frequency=4.602e-01	ks_quality_p_value=1	major_base=G	major_cov=59/36	major_frequency=5.398e-01	minor_base=A	minor_cov=34/47	new_cov=34/47	polymorphism_frequency=4.602e-01	polymorphism_score=179.5	prediction=polymorphism	ref_cov=59/36	total_cov=93/83
RA	461	.	Xen14_43	39330	0	G	C	bias_e_value=11659.6	bias_p_value=0.00234905	consensus_reject=FREQUENCY_CUTOFF	consensus_score=48.5	fisher_strand_p_value=0.00607092	frequency=4.566e-01	ks_quality_p_value=0.0416876	major_base=G	major_cov=57/37	major_frequency=5.434e-01	minor_base=C	minor_cov=31/48	new_cov=31/48	polymorphism_frequency=4.566e-01	polymorphism_score=261.2	prediction=polymorphism	ref_cov=57/37	total_cov=88/85
RA	462	.	Xen14_43	39336	0	C	T	bias_e_value=99771.4	bias_p_value=0.0201009	consensus_reject=FREQUENCY_CUTOFF	consensus_score=59.3	fisher_strand_p_value=0.00294387	frequency=4.371e-01	ks_quality_p_value=1	major_base=C	major_cov=56/38	major_frequency=5.629e-01	minor_base=T	minor_cov=26/47	new_cov=26/47	polymorphism_frequency=4.371e-01	polymorphism_score=156.3	prediction=polymorphism	ref_cov=56/38	total_cov=82/86
RA	463	.	Xen14_43	39338	0	G	A	bias_e_value=159061	bias_p_value=0.0320458	consensus_reject=FREQUENCY_CUTOFF	consensus_score=71.6	fisher_strand_p_value=0.00510481	frequency=4.286e-01	ks_quality_p_value=1	major_base=G	major_cov=56/40	major_frequency=5.714e-01	minor_base=A	minor_cov=26/46	new_cov=26/46	polymorphism_frequency=4.286e-01	polymorphism_score=150.3	prediction=polymorphism	ref_cov=56/40	total_cov=82/86
RA	464	.	Xen14_43	39342	0	A	G	bias_e_value=99439.2	bias_p_value=0.0200339	consensus_reject=FREQUENCY_CUTOFF	consensus_score=70.2	fisher_strand_p_value=0.00293239	frequency=4.311e-01	ks_quality_p_value=1	major_base=A	major_cov=57/38	major_frequency=5.689e-01	minor_base=G	minor_cov=26/46	new_cov=26/46	polymorphism_frequency=4.311e-01	polymorphism_score=147.6	prediction=polymorphism	ref_cov=57/38	total_cov=83/86
RA	465	.	Xen14_43	39366	0	T	C	bias_e_value=3062720	bias_p_value=0.617044	consensus_reject=FREQUENCY_CUTOFF	consensus_score=29.6	fisher_strand_p_value=0.630092	frequency=4.581e-01	ks_quality_p_value=0.420713	major_base=T	major_cov=44/40	major_frequency=5.419e-01	minor_base=C	minor_cov=34/37	new_cov=34/37	polymorphism_frequency=4.581e-01	polymorphism_score=158.5	prediction=polymorphism	ref_cov=44/40	total_cov=79/77
RA	466	.	Xen14_43	39408	0	A	G	bias_e_value=117229	bias_p_value=0.023618	consensus_reject=FREQUENCY_CUTOFF	consensus_score=40.8	fisher_strand_p_value=0.401256	frequency=4.345e-01	ks_quality_p_value=0.00886627	major_base=A	major_cov=35/47	major_frequency=5.655e-01	minor_base=G	minor_cov=32/31	new_cov=32/31	polymorphism_frequency=4.345e-01	polymorphism_score=138.7	prediction=polymorphism	ref_cov=35/47	total_cov=67/78
RA	467	.	Xen14_43	39411	0	G	A	bias_e_value=1538650	bias_p_value=0.309991	consensus_reject=FREQUENCY_CUTOFF	consensus_score=66.4	fisher_strand_p_value=0.241411	frequency=4.189e-01	ks_quality_p_value=0.378461	major_base=G	major_cov=35/51	major_frequency=5.811e-01	minor_base=A	minor_cov=32/30	new_cov=32/30	polymorphism_frequency=4.189e-01	polymorphism_score=130.5	prediction=polymorphism	ref_cov=35/51	total_cov=67/81
RA	468	.	Xen14_43	39417	0	G	A	bias_e_value=1401150	bias_p_value=0.282288	consensus_reject=FREQUENCY_CUTOFF	consensus_score=57.9	fisher_strand_p_value=0.126627	frequency=4.236e-01	ks_quality_p_value=0.632494	major_base=G	major_cov=32/51	major_frequency=5.764e-01	minor_base=A	minor_cov=32/29	new_cov=32/29	polymorphism_frequency=4.236e-01	polymorphism_score=131.1	prediction=polymorphism	ref_cov=32/51	total_cov=64/80
RA	469	.	Xen14_43	39423	0	G	C	bias_e_value=978948	bias_p_value=0.197228	consensus_reject=FREQUENCY_CUTOFF	consensus_score=108.4	fisher_strand_p_value=0.0491483	frequency=3.939e-01	ks_quality_p_value=1	major_base=G	major_cov=30/50	major_frequency=6.061e-01	minor_base=C	minor_cov=29/23	new_cov=29/23	polymorphism_frequency=3.939e-01	polymorphism_score=161.5	prediction=polymorphism	ref_cov=30/50	total_cov=59/73
RA	470	.	Xen14_43	39424	0	G	T	bias_e_value=717236	bias_p_value=0.144501	consensus_reject=FREQUENCY_CUTOFF	consensus_score=114.8	fisher_strand_p_value=0.0326867	frequency=3.893e-01	ks_quality_p_value=1	major_base=G	major_cov=30/50	major_frequency=6.107e-01	minor_base=T	minor_cov=29/22	new_cov=29/22	polymorphism_frequency=3.893e-01	polymorphism_score=139.7	prediction=polymorphism	ref_cov=30/50	total_cov=59/73
RA	471	.	Xen14_43	39425	0	A	G	bias_e_value=449346	bias_p_value=0.0905293	consensus_reject=FREQUENCY_CUTOFF	consensus_score=61.3	fisher_strand_p_value=0.0180539	frequency=4.048e-01	ks_quality_p_value=1	major_base=A	major_cov=25/50	major_frequency=5.952e-01	minor_base=G	minor_cov=28/23	new_cov=28/23	polymorphism_frequency=4.048e-01	polymorphism_score=110.4	prediction=polymorphism	ref_cov=25/50	total_cov=54/73
RA	472	.	Xen14_43	39435	0	G	A	bias_e_value=62114	bias_p_value=0.0125141	consensus_reject=FREQUENCY_CUTOFF	consensus_score=27.8	fisher_strand_p_value=0.00296242	frequency=4.580e-01	ks_quality_p_value=0.572423	major_base=G	major_cov=25/46	major_frequency=5.420e-01	minor_base=A	minor_cov=37/23	new_cov=37/23	polymorphism_frequency=4.580e-01	polymorphism_score=130.4	prediction=polymorphism	ref_cov=25/46	total_cov=62/69
RA	473	.	Xen14_43	39539	0	A	C	bias_e_value=3632.59	bias_p_value=0.000731856	consensus_reject=FREQUENCY_CUTOFF	consensus_score=76.9	fisher_strand_p_value=6.91815e-05	frequency=3.929e-01	ks_quality_p_value=1	major_base=A	major_cov=18/50	major_frequency=6.071e-01	minor_base=C	minor_cov=29/15	new_cov=29/15	polymorphism_frequency=3.929e-01	polymorphism_score=127.7	prediction=polymorphism	ref_cov=18/50	total_cov=47/65
RA	474	.	Xen14_43	39657	0	T	C	bias_e_value=122181	bias_p_value=0.0246157	consensus_reject=FREQUENCY_CUTOFF	consensus_score=11.9	fisher_strand_p_value=0.00970734	frequency=4.701e-01	ks_quality_p_value=0.384798	major_base=T	major_cov=22/40	major_frequency=5.299e-01	minor_base=C	minor_cov=33/22	new_cov=33/22	polymorphism_frequency=4.701e-01	polymorphism_score=120.7	prediction=polymorphism	ref_cov=22/40	total_cov=55/62
RA	475	.	Xen14_43	39680	0	T	C	bias_e_value=1266320	bias_p_value=0.255125	consensus_reject=FREQUENCY_CUTOFF	consensus_score=34.4	fisher_strand_p_value=0.292731	frequency=4.394e-01	ks_quality_p_value=0.237814	major_base=T	major_cov=33/41	major_frequency=5.606e-01	minor_base=C	minor_cov=32/26	new_cov=32/26	polymorphism_frequency=4.394e-01	polymorphism_score=125.6	prediction=polymorphism	ref_cov=33/41	total_cov=65/67
RA	476	.	Xen14_43	39862	0	C	A	bias_e_value=794.407	bias_p_value=0.000160049	consensus_reject=FREQUENCY_CUTOFF	consensus_score=11.7	fisher_strand_p_value=0.58635	frequency=4.672e-01	ks_quality_p_value=2.2291e-05	major_base=C	major_cov=35/30	major_frequency=5.328e-01	minor_base=A	minor_cov=27/30	new_cov=27/30	polymorphism_frequency=4.672e-01	polymorphism_score=168.6	prediction=polymorphism	ref_cov=35/30	total_cov=62/60
RA	477	.	Xen14_43	39877	0	G	A	bias_e_value=3669390	bias_p_value=0.739269	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=5.5	fisher_strand_p_value=0.580863	frequency=4.874e-01	ks_quality_p_value=0.639405	major_base=G	major_cov=29/32	major_frequency=5.126e-01	minor_base=A	minor_cov=24/34	new_cov=24/34	polymorphism_frequency=4.874e-01	polymorphism_score=128.9	prediction=polymorphism	ref_cov=29/32	total_cov=54/67
RA	478	.	Xen14_43	39878	0	T	C	bias_e_value=1741570	bias_p_value=0.350873	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=3.6	fisher_strand_p_value=0.462444	frequency=4.874e-01	ks_quality_p_value=0.235981	major_base=T	major_cov=30/31	major_frequency=5.126e-01	minor_base=C	minor_cov=24/34	new_cov=24/34	polymorphism_frequency=4.874e-01	polymorphism_score=129.3	prediction=polymorphism	ref_cov=30/31	total_cov=54/67
RA	479	.	Xen14_43	39899	0	T	G	bias_e_value=1183360	bias_p_value=0.23841	consensus_reject=FREQUENCY_CUTOFF	consensus_score=24.6	fisher_strand_p_value=0.139822	frequency=4.538e-01	ks_quality_p_value=0.453782	major_base=T	major_cov=32/33	major_frequency=5.462e-01	minor_base=G	minor_cov=19/35	new_cov=19/35	polymorphism_frequency=4.538e-01	polymorphism_score=165.1	prediction=polymorphism	ref_cov=32/33	total_cov=51/68
RA	480	.	Xen14_43	40767	0	G	A	bias_e_value=4194980	bias_p_value=0.84516	consensus_reject=FREQUENCY_CUTOFF	consensus_score=101.1	fisher_strand_p_value=0.832707	frequency=3.267e-01	ks_quality_p_value=0.598009	major_base=G	major_cov=39/29	major_frequency=6.733e-01	minor_base=A	minor_cov=18/15	new_cov=18/15	polymorphism_frequency=3.267e-01	polymorphism_score=63.7	prediction=polymorphism	ref_cov=39/29	total_cov=58/44
RA	481	.	Xen14_43	40794	0	G	A	bias_e_value=2669590	bias_p_value=0.537841	consensus_reject=FREQUENCY_CUTOFF	consensus_score=86.1	fisher_strand_p_value=0.210067	frequency=3.876e-01	ks_quality_p_value=1	major_base=G	major_cov=47/32	major_frequency=6.124e-01	minor_base=A	minor_cov=24/26	new_cov=24/26	polymorphism_frequency=3.876e-01	polymorphism_score=102.4	prediction=polymorphism	ref_cov=47/32	total_cov=71/58
RA	482	.	Xen14_43	40897	0	A	T	bias_e_value=4914130	bias_p_value=0.990047	consensus_reject=FREQUENCY_CUTOFF	consensus_score=26.8	fisher_strand_p_value=0.862268	frequency=4.662e-01	ks_quality_p_value=1	major_base=A	major_cov=31/40	major_frequency=5.338e-01	minor_base=T	minor_cov=26/36	new_cov=26/36	polymorphism_frequency=4.662e-01	polymorphism_score=184.1	prediction=polymorphism	ref_cov=31/40	total_cov=59/78
RA	483	.	Xen14_43	41059	0	A	G	bias_e_value=1106030	bias_p_value=0.222831	consensus_reject=FREQUENCY_CUTOFF	consensus_score=51.6	fisher_strand_p_value=0.221316	frequency=4.161e-01	ks_quality_p_value=0.261572	major_base=A	major_cov=41/39	major_frequency=5.839e-01	minor_base=G	minor_cov=36/21	new_cov=36/21	polymorphism_frequency=4.161e-01	polymorphism_score=121.9	prediction=polymorphism	ref_cov=41/39	total_cov=77/60
RA	484	.	Xen14_43	41061	0	T	C	bias_e_value=1900730	bias_p_value=0.382939	consensus_reject=FREQUENCY_CUTOFF	consensus_score=48.3	fisher_strand_p_value=0.291443	frequency=4.286e-01	ks_quality_p_value=0.425621	major_base=T	major_cov=39/37	major_frequency=5.714e-01	minor_base=C	minor_cov=35/22	new_cov=35/22	polymorphism_frequency=4.286e-01	polymorphism_score=121.7	prediction=polymorphism	ref_cov=39/37	total_cov=74/59
RA	485	.	Xen14_43	41075	0	G	A	bias_e_value=132697	bias_p_value=0.0267345	consensus_reject=FREQUENCY_CUTOFF	consensus_score=30.4	fisher_strand_p_value=0.0162348	frequency=4.519e-01	ks_quality_p_value=0.253639	major_base=G	major_cov=33/41	major_frequency=5.481e-01	minor_base=A	minor_cov=40/21	new_cov=40/21	polymorphism_frequency=4.519e-01	polymorphism_score=133.3	prediction=polymorphism	ref_cov=33/41	total_cov=73/62
RA	486	.	Xen14_43	41097	0	A	G	bias_e_value=1141310	bias_p_value=0.229938	consensus_reject=FREQUENCY_CUTOFF	consensus_score=42.0	fisher_strand_p_value=0.0604033	frequency=4.388e-01	ks_quality_p_value=1	major_base=A	major_cov=37/41	major_frequency=5.612e-01	minor_base=G	minor_cov=39/22	new_cov=39/22	polymorphism_frequency=4.388e-01	polymorphism_score=134.1	prediction=polymorphism	ref_cov=37/41	total_cov=76/63
RA	487	.	Xen14_43	41107	0	T	C	bias_e_value=1437620	bias_p_value=0.289636	consensus_reject=FREQUENCY_CUTOFF	consensus_score=28.0	fisher_strand_p_value=0.0830224	frequency=4.565e-01	ks_quality_p_value=1	major_base=T	major_cov=38/37	major_frequency=5.435e-01	minor_base=C	minor_cov=42/21	new_cov=42/21	polymorphism_frequency=4.565e-01	polymorphism_score=139.4	prediction=polymorphism	ref_cov=38/37	total_cov=80/58
RA	488	.	Xen14_43	41131	0	T	A	bias_e_value=699881	bias_p_value=0.141004	consensus_reject=FREQUENCY_CUTOFF	consensus_score=20.0	fisher_strand_p_value=0.0316692	frequency=4.720e-01	ks_quality_p_value=1	major_base=T	major_cov=32/34	major_frequency=5.280e-01	minor_base=A	minor_cov=40/19	new_cov=40/19	polymorphism_frequency=4.720e-01	polymorphism_score=175.3	prediction=polymorphism	ref_cov=32/34	total_cov=72/53
RA	489	.	Xen14_43	41148	0	C	T	bias_e_value=3082850	bias_p_value=0.6211	consensus_reject=FREQUENCY_CUTOFF	consensus_score=49.8	fisher_strand_p_value=0.577443	frequency=4.215e-01	ks_quality_p_value=0.464386	major_base=C	major_cov=40/30	major_frequency=5.785e-01	minor_base=T	minor_cov=32/19	new_cov=32/19	polymorphism_frequency=4.215e-01	polymorphism_score=108.9	prediction=polymorphism	ref_cov=40/30	total_cov=72/49
RA	490	.	Xen14_43	41162	0	T	C	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=60.9	fisher_strand_p_value=1	frequency=4.098e-01	ks_quality_p_value=1	major_base=T	major_cov=42/30	major_frequency=5.902e-01	minor_base=C	minor_cov=30/20	new_cov=30/20	polymorphism_frequency=4.098e-01	polymorphism_score=105.5	prediction=polymorphism	ref_cov=42/30	total_cov=72/50
RA	491	.	Xen14_43	41182	0	T	C	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=27.2	fisher_strand_p_value=1	frequency=4.528e-01	ks_quality_p_value=1	major_base=T	major_cov=35/23	major_frequency=5.472e-01	minor_base=C	minor_cov=29/19	new_cov=29/19	polymorphism_frequency=4.528e-01	polymorphism_score=103.7	prediction=polymorphism	ref_cov=35/23	total_cov=64/42
RA	492	.	Xen14_43	41209	0	T	A	bias_e_value=2322620	bias_p_value=0.467937	consensus_reject=FREQUENCY_CUTOFF	consensus_score=49.9	fisher_strand_p_value=0.823406	frequency=4.253e-01	ks_quality_p_value=0.204208	major_base=T	major_cov=32/18	major_frequency=5.747e-01	minor_base=A	minor_cov=22/15	new_cov=22/15	polymorphism_frequency=4.253e-01	polymorphism_score=106.0	prediction=polymorphism	ref_cov=32/18	total_cov=54/33
RA	493	.	Xen14_43	41219	1	.	T	bias_e_value=4571710	bias_p_value=0.921058	consensus_reject=FREQUENCY_CUTOFF	consensus_score=31.1	fisher_strand_p_value=0.629948	frequency=4.286e-01	ks_quality_p_value=1	major_base=.	major_cov=30/14	major_frequency=5.714e-01	minor_base=T	minor_cov=20/13	new_cov=20/13	polymorphism_frequency=4.286e-01	polymorphism_score=162.6	prediction=polymorphism	ref_cov=30/14	total_cov=50/27
RA	494	.	Xen14_45	36169	0	C	G	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=477.0	fisher_strand_p_value=1	frequency=2.180e-01	ks_quality_p_value=1	major_base=C	major_cov=71/94	major_frequency=7.820e-01	minor_base=G	minor_cov=20/26	new_cov=20/26	polymorphism_frequency=2.180e-01	polymorphism_score=129.5	prediction=polymorphism	ref_cov=71/94	total_cov=91/120
RA	495	.	Xen14_45	36193	0	A	C	bias_e_value=4701070	bias_p_value=0.947121	consensus_reject=FREQUENCY_CUTOFF	consensus_score=344.0	fisher_strand_p_value=0.692947	frequency=3.469e-01	ks_quality_p_value=1	major_base=A	major_cov=67/110	major_frequency=6.531e-01	minor_base=C	minor_cov=33/61	new_cov=33/61	polymorphism_frequency=3.469e-01	polymorphism_score=275.4	prediction=polymorphism	ref_cov=67/110	total_cov=100/171
RA	496	.	Xen14_45	36294	0	A	T	bias_e_value=3973750	bias_p_value=0.800588	consensus_reject=FREQUENCY_CUTOFF	consensus_score=559.7	fisher_strand_p_value=0.524531	frequency=3.118e-01	ks_quality_p_value=0.837351	major_base=A	major_cov=107/202	major_frequency=6.882e-01	minor_base=T	minor_cov=53/87	new_cov=53/87	polymorphism_frequency=3.118e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=107/202	total_cov=160/289
RA	497	.	Xen14_45	36298	0	C	T	bias_e_value=3628390	bias_p_value=0.73101	consensus_reject=FREQUENCY_CUTOFF	consensus_score=472.2	fisher_strand_p_value=0.392329	frequency=3.072e-01	ks_quality_p_value=0.925653	major_base=C	major_cov=106/203	major_frequency=6.928e-01	minor_base=T	minor_cov=53/84	new_cov=53/84	polymorphism_frequency=3.072e-01	polymorphism_score=276.1	prediction=polymorphism	ref_cov=106/203	total_cov=159/287
RA	498	.	Xen14_45	36361	0	A	C	bias_e_value=1704160	bias_p_value=0.343335	consensus_reject=FREQUENCY_CUTOFF	consensus_score=500.4	fisher_strand_p_value=0.111332	frequency=3.237e-01	ks_quality_p_value=0.949859	major_base=A	major_cov=108/174	major_frequency=6.763e-01	minor_base=C	minor_cov=63/72	new_cov=63/72	polymorphism_frequency=3.237e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=108/174	total_cov=172/246
RA	499	.	Xen14_5	81807	0	A	G	bias_e_value=0.0389617	bias_p_value=7.84959e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=155.0	fisher_strand_p_value=3.44445e-10	frequency=2.157e-01	ks_quality_p_value=1	major_base=A	major_cov=23/57	major_frequency=7.843e-01	minor_base=G	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.157e-01	polymorphism_score=20.1	prediction=polymorphism	ref_cov=23/57	total_cov=45/57
RA	500	.	Xen14_53	29874	0	A	G	bias_e_value=4926160	bias_p_value=0.99247	consensus_reject=FREQUENCY_CUTOFF	consensus_score=244.1	fisher_strand_p_value=0.879817	frequency=2.958e-01	ks_quality_p_value=1	major_base=A	major_cov=86/64	major_frequency=7.042e-01	minor_base=G	minor_cov=35/28	new_cov=35/28	polymorphism_frequency=2.958e-01	polymorphism_score=124.1	prediction=polymorphism	ref_cov=86/64	total_cov=121/93
RA	501	.	Xen14_53	30216	0	C	T	bias_e_value=2929270	bias_p_value=0.590157	consensus_reject=FREQUENCY_CUTOFF	consensus_score=41.6	fisher_strand_p_value=0.245402	frequency=5.469e-01	ks_quality_p_value=1	major_base=T	major_cov=53/52	major_frequency=5.469e-01	minor_base=C	minor_cov=36/51	new_cov=53/52	polymorphism_frequency=5.469e-01	polymorphism_score=189.5	prediction=polymorphism	ref_cov=36/51	total_cov=89/103
RA	502	.	Xen14_57	26027	0	T	A	bias_e_value=4629270	bias_p_value=0.932656	consensus_reject=FREQUENCY_CUTOFF	consensus_score=193.4	fisher_strand_p_value=0.656213	frequency=2.476e-01	ks_quality_p_value=1	major_base=T	major_cov=41/38	major_frequency=7.524e-01	minor_base=A	minor_cov=12/14	new_cov=12/14	polymorphism_frequency=2.476e-01	polymorphism_score=65.4	prediction=polymorphism	ref_cov=41/38	total_cov=53/52
RA	503	.	Xen14_57	26165	0	C	T	bias_e_value=1849960	bias_p_value=0.37271	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.3	fisher_strand_p_value=0.520255	frequency=4.444e-01	ks_quality_p_value=0.229098	major_base=C	major_cov=23/27	major_frequency=5.556e-01	minor_base=T	minor_cov=15/25	new_cov=15/25	polymorphism_frequency=4.444e-01	polymorphism_score=83.9	prediction=polymorphism	ref_cov=23/27	total_cov=38/52
RA	504	.	Xen14_59	23754	0	C	T	bias_e_value=3.39814	bias_p_value=6.8462e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=171.8	fisher_strand_p_value=1.96381e-07	frequency=2.095e-01	ks_quality_p_value=0.192716	major_base=C	major_cov=48/35	major_frequency=7.905e-01	minor_base=T	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.095e-01	polymorphism_score=35.9	prediction=polymorphism	ref_cov=48/35	total_cov=48/57
RA	505	.	Xen14_60	18851	0	T	A	bias_e_value=3559580	bias_p_value=0.717147	consensus_reject=FREQUENCY_CUTOFF	consensus_score=198.3	fisher_strand_p_value=0.822425	frequency=2.407e-01	ks_quality_p_value=0.425234	major_base=T	major_cov=38/44	major_frequency=7.593e-01	minor_base=A	minor_cov=11/15	new_cov=11/15	polymorphism_frequency=2.407e-01	polymorphism_score=65.1	prediction=polymorphism	ref_cov=38/44	total_cov=49/59
RA	506	.	Xen14_60	22002	0	C	T	bias_e_value=3571200	bias_p_value=0.719488	consensus_reject=FREQUENCY_CUTOFF	consensus_score=179.8	fisher_strand_p_value=0.351958	frequency=3.209e-01	ks_quality_p_value=1	major_base=C	major_cov=36/55	major_frequency=6.791e-01	minor_base=T	minor_cov=21/22	new_cov=21/22	polymorphism_frequency=3.209e-01	polymorphism_score=82.4	prediction=polymorphism	ref_cov=36/55	total_cov=57/77
RA	507	.	Xen14_60	22007	0	G	C	bias_e_value=3535550	bias_p_value=0.712305	consensus_reject=FREQUENCY_CUTOFF	consensus_score=196.3	fisher_strand_p_value=0.345143	frequency=3.554e-01	ks_quality_p_value=1	major_base=G	major_cov=31/47	major_frequency=6.446e-01	minor_base=C	minor_cov=21/22	new_cov=21/22	polymorphism_frequency=3.554e-01	polymorphism_score=131.7	prediction=polymorphism	ref_cov=31/47	total_cov=52/69
RA	508	.	Xen14_60	22014	0	G	A	bias_e_value=4413140	bias_p_value=0.889111	consensus_reject=FREQUENCY_CUTOFF	consensus_score=139.7	fisher_strand_p_value=0.567701	frequency=3.554e-01	ks_quality_p_value=1	major_base=G	major_cov=33/45	major_frequency=6.446e-01	minor_base=A	minor_cov=21/22	new_cov=21/22	polymorphism_frequency=3.554e-01	polymorphism_score=86.9	prediction=polymorphism	ref_cov=33/45	total_cov=54/67
RA	509	.	Xen14_60	22016	0	C	T	bias_e_value=488177	bias_p_value=0.0983527	consensus_reject=FREQUENCY_CUTOFF	consensus_score=133.2	fisher_strand_p_value=0.444392	frequency=3.613e-01	ks_quality_p_value=0.0450699	major_base=C	major_cov=31/45	major_frequency=6.387e-01	minor_base=T	minor_cov=21/22	new_cov=21/22	polymorphism_frequency=3.613e-01	polymorphism_score=87.7	prediction=polymorphism	ref_cov=31/45	total_cov=52/67
RA	510	.	Xen14_60	22041	0	C	T	bias_e_value=4712770	bias_p_value=0.949477	consensus_reject=FREQUENCY_CUTOFF	consensus_score=104.1	fisher_strand_p_value=0.699453	frequency=3.909e-01	ks_quality_p_value=1	major_base=C	major_cov=30/37	major_frequency=6.091e-01	minor_base=T	minor_cov=21/22	new_cov=21/22	polymorphism_frequency=3.909e-01	polymorphism_score=88.9	prediction=polymorphism	ref_cov=30/37	total_cov=51/59
RA	511	.	Xen14_60	22047	0	T	A	bias_e_value=3852280	bias_p_value=0.776117	consensus_reject=FREQUENCY_CUTOFF	consensus_score=136.5	fisher_strand_p_value=0.845578	frequency=3.874e-01	ks_quality_p_value=0.485621	major_base=T	major_cov=31/37	major_frequency=6.126e-01	minor_base=A	minor_cov=21/22	new_cov=21/22	polymorphism_frequency=3.874e-01	polymorphism_score=121.6	prediction=polymorphism	ref_cov=31/37	total_cov=52/59
RA	512	.	Xen14_60	22059	0	C	A	bias_e_value=944037	bias_p_value=0.190194	consensus_reject=FREQUENCY_CUTOFF	consensus_score=172.6	fisher_strand_p_value=0.508917	frequency=2.900e-01	ks_quality_p_value=0.0920234	major_base=C	major_cov=36/35	major_frequency=7.100e-01	minor_base=A	minor_cov=12/17	new_cov=12/17	polymorphism_frequency=2.900e-01	polymorphism_score=75.5	prediction=polymorphism	ref_cov=36/35	total_cov=48/53
RA	513	.	Xen14_60	22062	0	G	C	bias_e_value=771462	bias_p_value=0.155426	consensus_reject=FREQUENCY_CUTOFF	consensus_score=183.4	fisher_strand_p_value=0.511376	frequency=2.871e-01	ks_quality_p_value=0.0702533	major_base=G	major_cov=36/36	major_frequency=7.129e-01	minor_base=C	minor_cov=12/17	new_cov=12/17	polymorphism_frequency=2.871e-01	polymorphism_score=85.4	prediction=polymorphism	ref_cov=36/36	total_cov=48/53
RA	514	.	Xen14_60	22066	0	A	G	bias_e_value=1256280	bias_p_value=0.253101	consensus_reject=FREQUENCY_CUTOFF	consensus_score=142.9	fisher_strand_p_value=0.24407	frequency=2.632e-01	ks_quality_p_value=0.282123	major_base=A	major_cov=39/31	major_frequency=7.368e-01	minor_base=G	minor_cov=10/15	new_cov=10/15	polymorphism_frequency=2.632e-01	polymorphism_score=45.0	prediction=polymorphism	ref_cov=39/31	total_cov=49/46
RA	515	.	Xen14_60	22101	0	T	C	bias_e_value=27043	bias_p_value=0.00544832	consensus_reject=FREQUENCY_CUTOFF	consensus_score=156.1	fisher_strand_p_value=0.00155721	frequency=2.371e-01	ks_quality_p_value=0.419888	major_base=T	major_cov=37/37	major_frequency=7.629e-01	minor_base=C	minor_cov=3/20	new_cov=3/20	polymorphism_frequency=2.371e-01	polymorphism_score=40.3	prediction=polymorphism	ref_cov=37/37	total_cov=40/57
RA	516	.	Xen14_60	22116	0	T	C	bias_e_value=1988480	bias_p_value=0.400618	consensus_reject=FREQUENCY_CUTOFF	consensus_score=104.6	fisher_strand_p_value=0.132655	frequency=3.402e-01	ks_quality_p_value=1	major_base=T	major_cov=30/34	major_frequency=6.598e-01	minor_base=C	minor_cov=10/23	new_cov=10/23	polymorphism_frequency=3.402e-01	polymorphism_score=64.0	prediction=polymorphism	ref_cov=30/34	total_cov=40/57
RA	517	.	Xen14_60	22143	0	G	A	bias_e_value=3039950	bias_p_value=0.612456	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.6	fisher_strand_p_value=0.261649	frequency=4.737e-01	ks_quality_p_value=1	major_base=G	major_cov=30/30	major_frequency=5.263e-01	minor_base=A	minor_cov=21/33	new_cov=21/33	polymorphism_frequency=4.737e-01	polymorphism_score=119.7	prediction=polymorphism	ref_cov=30/30	total_cov=51/63
RA	518	.	Xen14_60	22155	0	C	T	bias_e_value=1741510	bias_p_value=0.350862	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=6.2	fisher_strand_p_value=0.109123	frequency=5.078e-01	ks_quality_p_value=1	major_base=T	major_cov=24/41	major_frequency=5.078e-01	minor_base=C	minor_cov=33/30	new_cov=24/41	polymorphism_frequency=5.078e-01	polymorphism_score=137.8	prediction=polymorphism	ref_cov=33/30	total_cov=57/71
RA	519	.	Xen14_60	22344	0	C	T	bias_e_value=1195660	bias_p_value=0.240889	consensus_reject=FREQUENCY_CUTOFF	consensus_score=80.9	fisher_strand_p_value=0.140896	frequency=3.700e-01	ks_quality_p_value=0.45672	major_base=C	major_cov=41/22	major_frequency=6.300e-01	minor_base=T	minor_cov=18/19	new_cov=18/19	polymorphism_frequency=3.700e-01	polymorphism_score=74.1	prediction=polymorphism	ref_cov=41/22	total_cov=60/41
RA	520	.	Xen14_64	201	0	T	A	bias_e_value=2880630	bias_p_value=0.580358	consensus_reject=FREQUENCY_CUTOFF	consensus_score=71.0	fisher_strand_p_value=0.80618	frequency=3.623e-01	ks_quality_p_value=0.295835	major_base=T	major_cov=21/23	major_frequency=6.377e-01	minor_base=A	minor_cov=11/14	new_cov=11/14	polymorphism_frequency=3.623e-01	polymorphism_score=67.6	prediction=polymorphism	ref_cov=21/23	total_cov=32/37
RA	521	.	Xen14_64	219	0	G	A	bias_e_value=1971840	bias_p_value=0.397265	consensus_reject=FREQUENCY_CUTOFF	consensus_score=89.0	fisher_strand_p_value=0.246971	frequency=2.500e-01	ks_quality_p_value=0.530426	major_base=G	major_cov=25/23	major_frequency=7.500e-01	minor_base=A	minor_cov=5/11	new_cov=5/11	polymorphism_frequency=2.500e-01	polymorphism_score=25.7	prediction=polymorphism	ref_cov=25/23	total_cov=31/34
RA	522	.	Xen14_64	859	0	T	C	bias_e_value=3277290	bias_p_value=0.660274	consensus_reject=FREQUENCY_CUTOFF	consensus_score=121.6	fisher_strand_p_value=0.831649	frequency=3.069e-01	ks_quality_p_value=0.359813	major_base=T	major_cov=40/30	major_frequency=6.931e-01	minor_base=C	minor_cov=17/14	new_cov=17/14	polymorphism_frequency=3.069e-01	polymorphism_score=59.6	prediction=polymorphism	ref_cov=40/30	total_cov=57/44
RA	523	.	Xen14_64	867	0	G	A	bias_e_value=3856420	bias_p_value=0.77695	consensus_reject=FREQUENCY_CUTOFF	consensus_score=109.9	fisher_strand_p_value=1	frequency=3.364e-01	ks_quality_p_value=0.411568	major_base=G	major_cov=42/29	major_frequency=6.636e-01	minor_base=A	minor_cov=21/15	new_cov=21/15	polymorphism_frequency=3.364e-01	polymorphism_score=71.0	prediction=polymorphism	ref_cov=42/29	total_cov=63/44
RA	524	.	Xen14_64	927	0	G	A	bias_e_value=738188	bias_p_value=0.148722	consensus_reject=FREQUENCY_CUTOFF	consensus_score=171.4	fisher_strand_p_value=0.0339275	frequency=3.216e-01	ks_quality_p_value=1	major_base=G	major_cov=51/65	major_frequency=6.784e-01	minor_base=A	minor_cov=34/21	new_cov=34/21	polymorphism_frequency=3.216e-01	polymorphism_score=105.6	prediction=polymorphism	ref_cov=51/65	total_cov=85/86
RA	525	.	Xen14_64	1145	0	A	G	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=174.6	fisher_strand_p_value=1	frequency=7.188e-01	ks_quality_p_value=1	major_base=G	major_cov=64/74	major_frequency=7.188e-01	minor_base=A	minor_cov=25/29	new_cov=64/74	polymorphism_frequency=7.188e-01	polymorphism_score=100.1	prediction=polymorphism	ref_cov=25/29	total_cov=89/103
RA	526	.	Xen14_64	1160	0	G	A	bias_e_value=3543530	bias_p_value=0.713912	consensus_reject=FREQUENCY_CUTOFF	consensus_score=136.4	fisher_strand_p_value=0.873918	frequency=7.005e-01	ks_quality_p_value=0.396669	major_base=A	major_cov=63/68	major_frequency=7.005e-01	minor_base=G	minor_cov=26/30	new_cov=63/68	polymorphism_frequency=7.005e-01	polymorphism_score=110.6	prediction=polymorphism	ref_cov=26/30	total_cov=90/98
RA	527	.	Xen14_64	1193	0	A	G	bias_e_value=1998080	bias_p_value=0.402551	consensus_reject=FREQUENCY_CUTOFF	consensus_score=31.7	fisher_strand_p_value=0.282424	frequency=6.145e-01	ks_quality_p_value=0.473095	major_base=G	major_cov=58/52	major_frequency=6.145e-01	minor_base=A	minor_cov=30/39	new_cov=58/52	polymorphism_frequency=6.145e-01	polymorphism_score=141.7	prediction=polymorphism	ref_cov=30/39	total_cov=88/91
RA	528	.	Xen14_64	1211	0	G	T	bias_e_value=4963540	bias_p_value=1	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=4.2	fisher_strand_p_value=1	frequency=6.199e-01	ks_quality_p_value=1	major_base=T	major_cov=54/52	major_frequency=6.199e-01	minor_base=G	minor_cov=33/32	new_cov=54/52	polymorphism_frequency=6.199e-01	polymorphism_score=193.3	prediction=polymorphism	ref_cov=33/32	total_cov=87/84
RA	529	.	Xen14_64	1217	0	A	G	bias_e_value=919258	bias_p_value=0.185202	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=9.0	fisher_strand_p_value=0.757604	frequency=6.057e-01	ks_quality_p_value=0.059676	major_base=G	major_cov=54/52	major_frequency=6.057e-01	minor_base=A	minor_cov=33/36	new_cov=54/52	polymorphism_frequency=6.057e-01	polymorphism_score=147.3	prediction=polymorphism	ref_cov=33/36	total_cov=87/88
RA	530	.	Xen14_64	1331	0	G	A	bias_e_value=171029	bias_p_value=0.034457	consensus_reject=FREQUENCY_CUTOFF	consensus_score=111.1	fisher_strand_p_value=0.0343445	frequency=7.056e-01	ks_quality_p_value=0.16205	major_base=A	major_cov=52/75	major_frequency=7.056e-01	minor_base=G	minor_cov=31/22	new_cov=52/75	polymorphism_frequency=7.056e-01	polymorphism_score=104.8	prediction=polymorphism	ref_cov=31/22	total_cov=83/97
RA	531	.	Xen14_64	1339	0	A	G	bias_e_value=92974.3	bias_p_value=0.0187315	consensus_reject=FREQUENCY_CUTOFF	consensus_score=139.7	fisher_strand_p_value=0.00271054	frequency=7.312e-01	ks_quality_p_value=1	major_base=G	major_cov=55/81	major_frequency=7.312e-01	minor_base=A	minor_cov=33/17	new_cov=55/81	polymorphism_frequency=7.312e-01	polymorphism_score=91.0	prediction=polymorphism	ref_cov=33/17	total_cov=88/98
RA	532	.	Xen14_64	1364	0	G	A	bias_e_value=33929.1	bias_p_value=0.00683566	consensus_reject=FREQUENCY_CUTOFF	consensus_score=109.1	fisher_strand_p_value=0.000846596	frequency=7.239e-01	ks_quality_p_value=1	major_base=A	major_cov=49/69	major_frequency=7.239e-01	minor_base=G	minor_cov=32/13	new_cov=49/69	polymorphism_frequency=7.239e-01	polymorphism_score=85.6	prediction=polymorphism	ref_cov=32/13	total_cov=81/82
RA	533	.	Xen14_64	1391	0	A	G	bias_e_value=4799.09	bias_p_value=0.000966869	consensus_reject=FREQUENCY_CUTOFF	consensus_score=53.4	fisher_strand_p_value=0.000730645	frequency=6.934e-01	ks_quality_p_value=0.128843	major_base=G	major_cov=33/62	major_frequency=6.934e-01	minor_base=A	minor_cov=28/14	new_cov=33/62	polymorphism_frequency=6.934e-01	polymorphism_score=81.3	prediction=polymorphism	ref_cov=28/14	total_cov=61/76
RA	534	.	Xen14_64	1397	0	A	G	bias_e_value=17465.1	bias_p_value=0.00351868	consensus_reject=FREQUENCY_CUTOFF	consensus_score=34.2	fisher_strand_p_value=0.00156804	frequency=6.692e-01	ks_quality_p_value=0.254204	major_base=G	major_cov=32/57	major_frequency=6.692e-01	minor_base=A	minor_cov=29/15	new_cov=32/57	polymorphism_frequency=6.692e-01	polymorphism_score=87.6	prediction=polymorphism	ref_cov=29/15	total_cov=61/72
RA	535	.	Xen14_64	1457	0	C	T	bias_e_value=3574260	bias_p_value=0.720103	consensus_reject=FREQUENCY_CUTOFF	consensus_score=39.4	fisher_strand_p_value=0.352547	frequency=4.795e-01	ks_quality_p_value=1	major_base=C	major_cov=22/16	major_frequency=5.205e-01	minor_base=T	minor_cov=16/19	new_cov=16/19	polymorphism_frequency=4.795e-01	polymorphism_score=75.8	prediction=polymorphism	ref_cov=22/16	total_cov=38/35
RA	536	.	Xen14_64	1472	0	T	C	bias_e_value=1960460	bias_p_value=0.394973	consensus_reject=FREQUENCY_CUTOFF	consensus_score=61.0	fisher_strand_p_value=0.484078	frequency=2.683e-01	ks_quality_p_value=0.268293	major_base=T	major_cov=16/14	major_frequency=7.317e-01	minor_base=C	minor_cov=4/7	new_cov=4/7	polymorphism_frequency=2.683e-01	polymorphism_score=17.0	prediction=polymorphism	ref_cov=16/14	total_cov=20/21
RA	537	.	Xen14_64	1475	0	A	G	bias_e_value=4158590	bias_p_value=0.837828	consensus_reject=FREQUENCY_CUTOFF	consensus_score=67.0	fisher_strand_p_value=0.487607	frequency=2.558e-01	ks_quality_p_value=1	major_base=A	major_cov=17/15	major_frequency=7.442e-01	minor_base=G	minor_cov=4/7	new_cov=4/7	polymorphism_frequency=2.558e-01	polymorphism_score=16.7	prediction=polymorphism	ref_cov=17/15	total_cov=21/22
RA	538	.	Xen14_64	1783	1	.	T	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=179.0	fisher_strand_p_value=1	frequency=2.714e-01	ks_quality_p_value=1	major_base=.	major_cov=21/30	major_frequency=7.286e-01	minor_base=T	minor_cov=8/11	new_cov=8/11	polymorphism_frequency=2.714e-01	polymorphism_score=85.3	prediction=polymorphism	ref_cov=21/30	total_cov=29/41
RA	539	.	Xen14_64	1848	0	G	A	bias_e_value=1877330	bias_p_value=0.378224	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-3.7	fisher_strand_p_value=0.607273	frequency=5.929e-01	ks_quality_p_value=0.20056	major_base=A	major_cov=45/38	major_frequency=5.929e-01	minor_base=G	minor_cov=28/29	new_cov=45/38	polymorphism_frequency=5.929e-01	polymorphism_score=121.7	prediction=polymorphism	ref_cov=28/29	total_cov=73/67
RA	540	.	Xen14_64	1893	0	C	T	bias_e_value=1531840	bias_p_value=0.308618	consensus_reject=FREQUENCY_CUTOFF	consensus_score=13.8	fisher_strand_p_value=0.737779	frequency=6.333e-01	ks_quality_p_value=0.123061	major_base=T	major_cov=49/46	major_frequency=6.333e-01	minor_base=C	minor_cov=30/25	new_cov=49/46	polymorphism_frequency=6.333e-01	polymorphism_score=114.8	prediction=polymorphism	ref_cov=30/25	total_cov=79/71
RA	541	.	Xen14_64	1917	0	A	C	bias_e_value=4910300	bias_p_value=0.989275	consensus_reject=FREQUENCY_CUTOFF	consensus_score=15.5	fisher_strand_p_value=0.857159	frequency=6.691e-01	ks_quality_p_value=1	major_base=C	major_cov=48/45	major_frequency=6.691e-01	minor_base=A	minor_cov=25/21	new_cov=48/45	polymorphism_frequency=6.691e-01	polymorphism_score=126.3	prediction=polymorphism	ref_cov=25/21	total_cov=73/66
RA	542	.	Xen14_64	1935	0	A	G	bias_e_value=894862	bias_p_value=0.180287	consensus_reject=FREQUENCY_CUTOFF	consensus_score=29.7	fisher_strand_p_value=0.200467	frequency=6.589e-01	ks_quality_p_value=0.217654	major_base=G	major_cov=38/47	major_frequency=6.589e-01	minor_base=A	minor_cov=25/19	new_cov=38/47	polymorphism_frequency=6.589e-01	polymorphism_score=86.7	prediction=polymorphism	ref_cov=25/19	total_cov=63/66
RA	543	.	Xen14_64	1942	0	T	C	bias_e_value=3549610	bias_p_value=0.715136	consensus_reject=FREQUENCY_CUTOFF	consensus_score=11.4	fisher_strand_p_value=0.347814	frequency=6.364e-01	ks_quality_p_value=1	major_base=C	major_cov=33/44	major_frequency=6.364e-01	minor_base=T	minor_cov=23/21	new_cov=33/44	polymorphism_frequency=6.364e-01	polymorphism_score=89.3	prediction=polymorphism	ref_cov=23/21	total_cov=56/65
RA	544	.	Xen14_64	1944	0	A	G	bias_e_value=920956	bias_p_value=0.185544	consensus_reject=FREQUENCY_CUTOFF	consensus_score=10.5	fisher_strand_p_value=0.347814	frequency=6.364e-01	ks_quality_p_value=0.130303	major_base=G	major_cov=33/44	major_frequency=6.364e-01	minor_base=A	minor_cov=23/21	new_cov=33/44	polymorphism_frequency=6.364e-01	polymorphism_score=90.0	prediction=polymorphism	ref_cov=23/21	total_cov=56/65
RA	545	.	Xen14_64	1986	0	C	T	bias_e_value=3048520	bias_p_value=0.614183	consensus_reject=FREQUENCY_CUTOFF	consensus_score=71.2	fisher_strand_p_value=0.644626	frequency=4.079e-01	ks_quality_p_value=0.407895	major_base=C	major_cov=20/25	major_frequency=5.921e-01	minor_base=T	minor_cov=12/19	new_cov=12/19	polymorphism_frequency=4.079e-01	polymorphism_score=63.8	prediction=polymorphism	ref_cov=20/25	total_cov=32/44
RA	546	.	Xen14_64	2001	0	A	G	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=98.3	fisher_strand_p_value=1	frequency=2.742e-01	ks_quality_p_value=1	major_base=A	major_cov=19/26	major_frequency=7.258e-01	minor_base=G	minor_cov=7/10	new_cov=7/10	polymorphism_frequency=2.742e-01	polymorphism_score=27.4	prediction=polymorphism	ref_cov=19/26	total_cov=27/36
RA	547	.	Xen14_64	2004	0	A	G	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=100.5	fisher_strand_p_value=1	frequency=2.698e-01	ks_quality_p_value=1	major_base=A	major_cov=20/26	major_frequency=7.302e-01	minor_base=G	minor_cov=7/10	new_cov=7/10	polymorphism_frequency=2.698e-01	polymorphism_score=26.1	prediction=polymorphism	ref_cov=20/26	total_cov=27/36
RA	548	.	Xen14_64	2019	0	T	C	bias_e_value=2208440	bias_p_value=0.444932	consensus_reject=FREQUENCY_CUTOFF	consensus_score=88.2	fisher_strand_p_value=0.563746	frequency=2.759e-01	ks_quality_p_value=0.275862	major_base=T	major_cov=20/22	major_frequency=7.241e-01	minor_base=C	minor_cov=6/10	new_cov=6/10	polymorphism_frequency=2.759e-01	polymorphism_score=27.5	prediction=polymorphism	ref_cov=20/22	total_cov=26/32
RA	549	.	Xen14_64	2027	0	A	G	bias_e_value=3631170	bias_p_value=0.731568	consensus_reject=FREQUENCY_CUTOFF	consensus_score=90.6	fisher_strand_p_value=0.770188	frequency=2.712e-01	ks_quality_p_value=0.472238	major_base=A	major_cov=19/24	major_frequency=7.288e-01	minor_base=G	minor_cov=6/10	new_cov=6/10	polymorphism_frequency=2.712e-01	polymorphism_score=27.0	prediction=polymorphism	ref_cov=19/24	total_cov=25/34
RA	550	.	Xen14_64	2028	0	C	T	bias_e_value=3388680	bias_p_value=0.682714	consensus_reject=FREQUENCY_CUTOFF	consensus_score=88.3	fisher_strand_p_value=0.770188	frequency=2.712e-01	ks_quality_p_value=0.413318	major_base=C	major_cov=19/24	major_frequency=7.288e-01	minor_base=T	minor_cov=6/10	new_cov=6/10	polymorphism_frequency=2.712e-01	polymorphism_score=26.4	prediction=polymorphism	ref_cov=19/24	total_cov=25/34
RA	551	.	Xen14_64	2382	0	A	T	bias_e_value=2430400	bias_p_value=0.48965	consensus_reject=FREQUENCY_CUTOFF	consensus_score=85.6	fisher_strand_p_value=0.429977	frequency=3.832e-01	ks_quality_p_value=0.419966	major_base=A	major_cov=33/33	major_frequency=6.168e-01	minor_base=T	minor_cov=24/17	new_cov=24/17	polymorphism_frequency=3.832e-01	polymorphism_score=115.6	prediction=polymorphism	ref_cov=33/33	total_cov=57/50
RA	552	.	Xen14_69	11048	0	A	C	bias_e_value=0.839872	bias_p_value=1.69208e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=100.7	fisher_strand_p_value=8.64811e-09	frequency=3.239e-01	ks_quality_p_value=1	major_base=A	major_cov=15/33	major_frequency=6.761e-01	minor_base=C	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=3.239e-01	polymorphism_score=13.5	prediction=polymorphism	ref_cov=15/33	total_cov=39/33
RA	553	.	Xen14_70	14163	0	G	A	bias_e_value=3206540	bias_p_value=0.646019	consensus_reject=FREQUENCY_CUTOFF	consensus_score=82.3	fisher_strand_p_value=0.828821	frequency=3.977e-01	ks_quality_p_value=0.347015	major_base=G	major_cov=29/24	major_frequency=6.023e-01	minor_base=A	minor_cov=18/17	new_cov=18/17	polymorphism_frequency=3.977e-01	polymorphism_score=71.8	prediction=polymorphism	ref_cov=29/24	total_cov=47/41
RA	554	.	Xen14_70	14184	0	T	G	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=50.4	fisher_strand_p_value=1	frequency=5.439e-01	ks_quality_p_value=1	major_base=G	major_cov=34/28	major_frequency=5.439e-01	minor_base=T	minor_cov=29/23	new_cov=34/28	polymorphism_frequency=5.439e-01	polymorphism_score=149.7	prediction=polymorphism	ref_cov=29/23	total_cov=63/51
RA	555	.	Xen14_70	14188	0	T	C	bias_e_value=1411770	bias_p_value=0.284428	consensus_reject=FREQUENCY_CUTOFF	consensus_score=21.0	fisher_strand_p_value=0.853096	frequency=5.391e-01	ks_quality_p_value=0.0948786	major_base=C	major_cov=34/28	major_frequency=5.391e-01	minor_base=T	minor_cov=28/25	new_cov=34/28	polymorphism_frequency=5.391e-01	polymorphism_score=116.6	prediction=polymorphism	ref_cov=28/25	total_cov=62/53
RA	556	.	Xen14_70	14202	0	C	T	bias_e_value=2756740	bias_p_value=0.555398	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=5.7	fisher_strand_p_value=1	frequency=5.625e-01	ks_quality_p_value=0.221516	major_base=T	major_cov=42/30	major_frequency=5.625e-01	minor_base=C	minor_cov=33/23	new_cov=42/30	polymorphism_frequency=5.625e-01	polymorphism_score=122.3	prediction=polymorphism	ref_cov=33/23	total_cov=75/53
RA	557	.	Xen14_70	14208	0	A	G	bias_e_value=1287150	bias_p_value=0.25932	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=7.4	fisher_strand_p_value=0.859791	frequency=5.597e-01	ks_quality_p_value=0.082807	major_base=G	major_cov=44/31	major_frequency=5.597e-01	minor_base=A	minor_cov=36/23	new_cov=44/31	polymorphism_frequency=5.597e-01	polymorphism_score=127.7	prediction=polymorphism	ref_cov=36/23	total_cov=80/54
RA	558	.	Xen14_70	14217	0	A	C	bias_e_value=1869140	bias_p_value=0.376574	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=2.3	fisher_strand_p_value=0.393065	frequency=5.931e-01	ks_quality_p_value=0.307869	major_base=C	major_cov=47/39	major_frequency=5.931e-01	minor_base=A	minor_cov=37/22	new_cov=47/39	polymorphism_frequency=5.931e-01	polymorphism_score=165.4	prediction=polymorphism	ref_cov=37/22	total_cov=84/62
RA	559	.	Xen14_70	14220	0	G	A	bias_e_value=875535	bias_p_value=0.176393	consensus_reject=FREQUENCY_CUTOFF	consensus_score=12.6	fisher_strand_p_value=0.311813	frequency=5.959e-01	ks_quality_p_value=0.135962	major_base=A	major_cov=47/40	major_frequency=5.959e-01	minor_base=G	minor_cov=37/22	new_cov=47/40	polymorphism_frequency=5.959e-01	polymorphism_score=124.4	prediction=polymorphism	ref_cov=37/22	total_cov=84/62
RA	560	.	Xen14_70	14250	0	G	C	bias_e_value=380220	bias_p_value=0.0766026	consensus_reject=FREQUENCY_CUTOFF	consensus_score=112.3	fisher_strand_p_value=0.0599483	frequency=7.052e-01	ks_quality_p_value=0.244697	major_base=C	major_cov=69/53	major_frequency=7.052e-01	minor_base=G	minor_cov=37/14	new_cov=69/53	polymorphism_frequency=7.052e-01	polymorphism_score=155.0	prediction=polymorphism	ref_cov=37/14	total_cov=107/67
RA	561	.	Xen14_70	14259	0	C	G	bias_e_value=227678	bias_p_value=0.04587	consensus_reject=FREQUENCY_CUTOFF	consensus_score=154.2	fisher_strand_p_value=0.114763	frequency=7.371e-01	ks_quality_p_value=0.0683466	major_base=G	major_cov=75/54	major_frequency=7.371e-01	minor_base=C	minor_cov=33/13	new_cov=75/54	polymorphism_frequency=7.371e-01	polymorphism_score=135.5	prediction=polymorphism	ref_cov=33/13	total_cov=109/67
RA	562	.	Xen14_70	14316	0	A	T	bias_e_value=799516	bias_p_value=0.161078	consensus_reject=FREQUENCY_CUTOFF	consensus_score=143.9	fisher_strand_p_value=0.216455	frequency=7.328e-01	ks_quality_p_value=0.173879	major_base=T	major_cov=59/37	major_frequency=7.328e-01	minor_base=A	minor_cov=26/9	new_cov=59/37	polymorphism_frequency=7.328e-01	polymorphism_score=91.2	prediction=polymorphism	ref_cov=26/9	total_cov=85/46
RA	563	.	Xen14_70	14319	0	G	A	bias_e_value=4334010	bias_p_value=0.873169	consensus_reject=FREQUENCY_CUTOFF	consensus_score=134.8	fisher_strand_p_value=0.540696	frequency=7.209e-01	ks_quality_p_value=1	major_base=A	major_cov=58/35	major_frequency=7.209e-01	minor_base=G	minor_cov=25/11	new_cov=58/35	polymorphism_frequency=7.209e-01	polymorphism_score=65.1	prediction=polymorphism	ref_cov=25/11	total_cov=84/46
RA	564	.	Xen14_70	14325	0	C	A	bias_e_value=3243460	bias_p_value=0.653458	consensus_reject=FREQUENCY_CUTOFF	consensus_score=139.1	fisher_strand_p_value=0.293633	frequency=7.302e-01	ks_quality_p_value=1	major_base=A	major_cov=57/35	major_frequency=7.302e-01	minor_base=C	minor_cov=25/9	new_cov=57/35	polymorphism_frequency=7.302e-01	polymorphism_score=88.9	prediction=polymorphism	ref_cov=25/9	total_cov=82/45
RA	565	.	Xen14_75	6653	0	A	G	bias_e_value=165.437	bias_p_value=3.33304e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=118.2	fisher_strand_p_value=2.39029e-06	frequency=2.473e-01	ks_quality_p_value=1	major_base=A	major_cov=34/36	major_frequency=7.527e-01	minor_base=G	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.473e-01	polymorphism_score=14.6	prediction=polymorphism	ref_cov=34/36	total_cov=57/36
RA	566	.	Xen14_75	9248	0	A	G	bias_e_value=9.26986	bias_p_value=1.86759e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=133.7	fisher_strand_p_value=1.09693e-07	frequency=2.500e-01	ks_quality_p_value=1	major_base=A	major_cov=31/41	major_frequency=7.500e-01	minor_base=G	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.500e-01	polymorphism_score=18.8	prediction=polymorphism	ref_cov=31/41	total_cov=55/41
RA	567	.	Xen14_75	12911	0	C	T	bias_e_value=434519	bias_p_value=0.0875422	consensus_reject=FREQUENCY_CUTOFF	consensus_score=117.0	fisher_strand_p_value=0.0323973	frequency=3.500e-01	ks_quality_p_value=0.534415	major_base=C	major_cov=43/48	major_frequency=6.500e-01	minor_base=T	minor_cov=33/16	new_cov=33/16	polymorphism_frequency=3.500e-01	polymorphism_score=99.5	prediction=polymorphism	ref_cov=43/48	total_cov=76/64
RA	568	.	Xen14_75	13015	0	C	A	bias_e_value=3792130	bias_p_value=0.763997	consensus_reject=FREQUENCY_CUTOFF	consensus_score=43.1	fisher_strand_p_value=1	frequency=6.027e-01	ks_quality_p_value=0.39726	major_base=A	major_cov=18/26	major_frequency=6.027e-01	minor_base=C	minor_cov=11/18	new_cov=18/26	polymorphism_frequency=6.027e-01	polymorphism_score=85.5	prediction=polymorphism	ref_cov=11/18	total_cov=29/44
RA	569	.	Xen14_76	12826	0	G	A	bias_e_value=327293	bias_p_value=0.0659394	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=1.2	fisher_strand_p_value=0.012196	frequency=5.269e-01	ks_quality_p_value=1	major_base=A	major_cov=29/20	major_frequency=5.269e-01	minor_base=G	minor_cov=14/30	new_cov=29/20	polymorphism_frequency=5.269e-01	polymorphism_score=91.0	prediction=polymorphism	ref_cov=14/30	total_cov=43/50
RA	570	.	Xen14_76	12830	0	G	A	bias_e_value=789654	bias_p_value=0.159091	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=0.3	fisher_strand_p_value=0.0370327	frequency=5.111e-01	ks_quality_p_value=1	major_base=A	major_cov=26/20	major_frequency=5.111e-01	minor_base=G	minor_cov=15/29	new_cov=26/20	polymorphism_frequency=5.111e-01	polymorphism_score=89.2	prediction=polymorphism	ref_cov=15/29	total_cov=41/49
RA	571	.	Xen14_76	12843	0	C	T	bias_e_value=3851380	bias_p_value=0.775935	consensus_reject=FREQUENCY_CUTOFF	consensus_score=34.8	fisher_strand_p_value=0.410426	frequency=5.789e-01	ks_quality_p_value=1	major_base=T	major_cov=27/28	major_frequency=5.789e-01	minor_base=C	minor_cov=16/24	new_cov=27/28	polymorphism_frequency=5.789e-01	polymorphism_score=79.5	prediction=polymorphism	ref_cov=16/24	total_cov=43/52
RA	572	.	Xen14_76	12857	1	.	T	bias_e_value=3744300	bias_p_value=0.754361	consensus_reject=FREQUENCY_CUTOFF	consensus_score=177.3	fisher_strand_p_value=0.386968	frequency=6.559e-01	ks_quality_p_value=1	major_base=T	major_cov=29/32	major_frequency=6.559e-01	minor_base=.	minor_cov=12/20	new_cov=29/32	polymorphism_frequency=6.559e-01	polymorphism_score=109.0	prediction=polymorphism	ref_cov=12/20	total_cov=41/52
RA	573	.	Xen14_77	12505	0	T	C	bias_e_value=828508	bias_p_value=0.166919	consensus_reject=FREQUENCY_CUTOFF	consensus_score=127.4	fisher_strand_p_value=0.107657	frequency=2.222e-01	ks_quality_p_value=0.366264	major_base=T	major_cov=24/39	major_frequency=7.778e-01	minor_base=C	minor_cov=11/7	new_cov=11/7	polymorphism_frequency=2.222e-01	polymorphism_score=28.9	prediction=polymorphism	ref_cov=24/39	total_cov=35/46
RA	574	.	Xen14_77	12588	1	.	T	bias_e_value=371457	bias_p_value=0.0748372	consensus_reject=FREQUENCY_CUTOFF	consensus_score=82.8	fisher_strand_p_value=0.250609	frequency=2.833e-01	ks_quality_p_value=0.0568712	major_base=.	major_cov=17/26	major_frequency=7.167e-01	minor_base=T	minor_cov=10/7	new_cov=10/7	polymorphism_frequency=2.833e-01	polymorphism_score=77.7	prediction=polymorphism	ref_cov=17/26	total_cov=27/33
RA	575	.	Xen14_79	78	0	T	C	bias_e_value=3000540	bias_p_value=0.604516	consensus_reject=FREQUENCY_CUTOFF	consensus_score=29.6	fisher_strand_p_value=1	frequency=5.375e-01	ks_quality_p_value=0.255777	major_base=C	major_cov=40/46	major_frequency=5.375e-01	minor_base=T	minor_cov=34/40	new_cov=40/46	polymorphism_frequency=5.375e-01	polymorphism_score=164.6	prediction=polymorphism	ref_cov=34/40	total_cov=74/86
RA	576	.	Xen14_79	210	0	C	T	bias_e_value=4210140	bias_p_value=0.848213	consensus_reject=FREQUENCY_CUTOFF	consensus_score=16.7	fisher_strand_p_value=0.502374	frequency=4.848e-01	ks_quality_p_value=1	major_base=C	major_cov=74/45	major_frequency=5.152e-01	minor_base=T	minor_cov=64/48	new_cov=64/48	polymorphism_frequency=4.848e-01	polymorphism_score=251.0	prediction=polymorphism	ref_cov=74/45	total_cov=138/93
RA	577	.	Xen14_8	67793	0	C	G	bias_e_value=1.54516e-13	bias_p_value=3.11301e-20	consensus_reject=FREQUENCY_CUTOFF	consensus_score=169.1	fisher_strand_p_value=6.24794e-22	frequency=3.889e-01	ks_quality_p_value=1	major_base=C	major_cov=15/62	major_frequency=6.111e-01	minor_base=G	minor_cov=49/0	new_cov=49/0	polymorphism_frequency=3.889e-01	polymorphism_score=77.3	prediction=polymorphism	ref_cov=15/62	total_cov=71/62
RA	578	.	Xen14_81	3150	0	G	.	bias_e_value=517250	bias_p_value=0.10421	consensus_reject=FREQUENCY_CUTOFF	consensus_score=65.3	fisher_strand_p_value=1	frequency=2.162e-01	ks_quality_p_value=0.0215407	major_base=G	major_cov=20/9	major_frequency=7.838e-01	minor_base=.	minor_cov=6/2	new_cov=6/2	polymorphism_frequency=2.162e-01	polymorphism_score=23.9	prediction=polymorphism	ref_cov=20/9	total_cov=26/13
RA	579	.	Xen14_83	78	0	G	C	bias_e_value=1932550	bias_p_value=0.389348	consensus_reject=FREQUENCY_CUTOFF	consensus_score=131.0	fisher_strand_p_value=0.430625	frequency=3.509e-01	ks_quality_p_value=0.29523	major_base=G	major_cov=45/29	major_frequency=6.491e-01	minor_base=C	minor_cov=21/19	new_cov=21/19	polymorphism_frequency=3.509e-01	polymorphism_score=122.0	prediction=polymorphism	ref_cov=45/29	total_cov=66/48
RA	580	.	Xen14_83	91	0	T	C	bias_e_value=4147000	bias_p_value=0.835492	consensus_reject=FREQUENCY_CUTOFF	consensus_score=108.9	fisher_strand_p_value=0.484369	frequency=3.669e-01	ks_quality_p_value=1	major_base=T	major_cov=52/36	major_frequency=6.331e-01	minor_base=C	minor_cov=27/24	new_cov=27/24	polymorphism_frequency=3.669e-01	polymorphism_score=98.8	prediction=polymorphism	ref_cov=52/36	total_cov=79/60
RA	581	.	Xen14_83	11287	0	T	C	bias_e_value=3597890	bias_p_value=0.724864	consensus_score=28.0	deleted=1	fisher_strand_p_value=0.357143	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=4/9	major_frequency=9.286e-01	minor_base=T	minor_cov=1/0	new_cov=4/9	polymorphism_frequency=9.286e-01	polymorphism_score=-6.6	prediction=consensus	ref_cov=1/0	total_cov=5/9
RA	582	.	Xen14_83	11302	0	G	C	consensus_score=13.3	deleted=1	frequency=1	major_base=C	major_cov=3/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/5
RA	583	.	Xen14_83	11305	0	T	C	consensus_score=11.4	deleted=1	frequency=1	major_base=C	major_cov=3/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/5
RA	584	.	Xen14_85	2740	0	G	A	bias_e_value=2504020	bias_p_value=0.504484	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=0.7	fisher_strand_p_value=0.660082	frequency=4.973e-01	ks_quality_p_value=0.286881	major_base=G	major_cov=48/45	major_frequency=5.027e-01	minor_base=A	minor_cov=44/48	new_cov=44/48	polymorphism_frequency=4.973e-01	polymorphism_score=206.5	prediction=polymorphism	ref_cov=48/45	total_cov=92/93
RA	585	.	Xen14_85	2917	0	C	T	bias_e_value=175918	bias_p_value=0.0354421	consensus_reject=FREQUENCY_CUTOFF	consensus_score=251.4	fisher_strand_p_value=0.0172418	frequency=2.292e-01	ks_quality_p_value=0.333833	major_base=C	major_cov=54/57	major_frequency=7.708e-01	minor_base=T	minor_cov=24/9	new_cov=24/9	polymorphism_frequency=2.292e-01	polymorphism_score=58.2	prediction=polymorphism	ref_cov=54/57	total_cov=78/66
RA	586	.	Xen14_85	2923	0	T	A	bias_e_value=34430.6	bias_p_value=0.0069367	consensus_reject=FREQUENCY_CUTOFF	consensus_score=306.0	fisher_strand_p_value=0.000860896	frequency=2.628e-01	ks_quality_p_value=1	major_base=T	major_cov=54/61	major_frequency=7.372e-01	minor_base=A	minor_cov=32/9	new_cov=32/9	polymorphism_frequency=2.628e-01	polymorphism_score=107.0	prediction=polymorphism	ref_cov=54/61	total_cov=86/70
RA	587	.	Xen14_85	2935	0	C	A	bias_e_value=5183.53	bias_p_value=0.00104432	consensus_reject=FREQUENCY_CUTOFF	consensus_score=322.2	fisher_strand_p_value=0.00156908	frequency=2.978e-01	ks_quality_p_value=0.0653451	major_base=C	major_cov=65/60	major_frequency=7.022e-01	minor_base=A	minor_cov=41/12	new_cov=41/12	polymorphism_frequency=2.978e-01	polymorphism_score=143.9	prediction=polymorphism	ref_cov=65/60	total_cov=106/72
RA	588	.	Xen14_85	2938	0	G	C	bias_e_value=17465.4	bias_p_value=0.00351873	consensus_reject=FREQUENCY_CUTOFF	consensus_score=353.0	fisher_strand_p_value=0.00275535	frequency=2.880e-01	ks_quality_p_value=0.144667	major_base=G	major_cov=70/61	major_frequency=7.120e-01	minor_base=C	minor_cov=41/12	new_cov=41/12	polymorphism_frequency=2.880e-01	polymorphism_score=159.9	prediction=polymorphism	ref_cov=70/61	total_cov=111/73
RA	589	.	Xen14_85	2942	0	A	G	bias_e_value=88753.5	bias_p_value=0.0178811	consensus_reject=FREQUENCY_CUTOFF	consensus_score=265.1	fisher_strand_p_value=0.00256732	frequency=2.912e-01	ks_quality_p_value=1	major_base=A	major_cov=68/61	major_frequency=7.088e-01	minor_base=G	minor_cov=41/12	new_cov=41/12	polymorphism_frequency=2.912e-01	polymorphism_score=104.3	prediction=polymorphism	ref_cov=68/61	total_cov=109/73
RA	590	.	Xen14_85	2962	0	G	A	bias_e_value=213895	bias_p_value=0.0430932	consensus_reject=FREQUENCY_CUTOFF	consensus_score=251.1	fisher_strand_p_value=0.021195	frequency=3.316e-01	ks_quality_p_value=0.343252	major_base=G	major_cov=67/64	major_frequency=6.684e-01	minor_base=A	minor_cov=45/20	new_cov=45/20	polymorphism_frequency=3.316e-01	polymorphism_score=128.9	prediction=polymorphism	ref_cov=67/64	total_cov=112/84
RA	591	.	Xen14_85	2965	0	A	G	bias_e_value=411777	bias_p_value=0.0829604	consensus_reject=FREQUENCY_CUTOFF	consensus_score=235.5	fisher_strand_p_value=0.030246	frequency=3.386e-01	ks_quality_p_value=0.535383	major_base=A	major_cov=65/60	major_frequency=6.614e-01	minor_base=G	minor_cov=44/20	new_cov=44/20	polymorphism_frequency=3.386e-01	polymorphism_score=129.2	prediction=polymorphism	ref_cov=65/60	total_cov=110/80
RA	592	.	Xen14_85	2969	0	T	C	bias_e_value=68662.6	bias_p_value=0.0138334	consensus_reject=FREQUENCY_CUTOFF	consensus_score=239.4	fisher_strand_p_value=0.0202163	frequency=3.299e-01	ks_quality_p_value=0.094206	major_base=T	major_cov=68/62	major_frequency=6.701e-01	minor_base=C	minor_cov=45/19	new_cov=45/19	polymorphism_frequency=3.299e-01	polymorphism_score=128.5	prediction=polymorphism	ref_cov=68/62	total_cov=113/81
RA	593	.	Xen14_85	2971	0	C	G	bias_e_value=447117	bias_p_value=0.0900804	consensus_reject=FREQUENCY_CUTOFF	consensus_score=335.1	fisher_strand_p_value=0.0313738	frequency=3.351e-01	ks_quality_p_value=0.571883	major_base=C	major_cov=68/61	major_frequency=6.649e-01	minor_base=G	minor_cov=45/20	new_cov=45/20	polymorphism_frequency=3.351e-01	polymorphism_score=201.0	prediction=polymorphism	ref_cov=68/61	total_cov=113/81
RA	594	.	Xen14_85	2992	0	T	C	bias_e_value=365557	bias_p_value=0.0736484	consensus_reject=FREQUENCY_CUTOFF	consensus_score=259.6	fisher_strand_p_value=0.0316359	frequency=3.284e-01	ks_quality_p_value=0.441696	major_base=T	major_cov=74/61	major_frequency=6.716e-01	minor_base=C	minor_cov=47/19	new_cov=47/19	polymorphism_frequency=3.284e-01	polymorphism_score=132.1	prediction=polymorphism	ref_cov=74/61	total_cov=121/80
RA	595	.	Xen14_85	3019	0	G	A	bias_e_value=469597	bias_p_value=0.0946094	consensus_reject=FREQUENCY_CUTOFF	consensus_score=300.2	fisher_strand_p_value=0.0641826	frequency=3.019e-01	ks_quality_p_value=0.297235	major_base=G	major_cov=85/63	major_frequency=6.981e-01	minor_base=A	minor_cov=46/18	new_cov=46/18	polymorphism_frequency=3.019e-01	polymorphism_score=125.3	prediction=polymorphism	ref_cov=85/63	total_cov=131/81
RA	596	.	Xen14_85	3031	0	C	T	bias_e_value=267265	bias_p_value=0.0538456	consensus_reject=FREQUENCY_CUTOFF	consensus_score=280.7	fisher_strand_p_value=0.0230728	frequency=2.995e-01	ks_quality_p_value=0.412757	major_base=C	major_cov=81/57	major_frequency=7.005e-01	minor_base=T	minor_cov=45/14	new_cov=45/14	polymorphism_frequency=2.995e-01	polymorphism_score=116.2	prediction=polymorphism	ref_cov=81/57	total_cov=127/71
RA	597	.	Xen14_85	6486	0	A	G	bias_e_value=915964	bias_p_value=0.184538	consensus_reject=FREQUENCY_CUTOFF	consensus_score=167.5	fisher_strand_p_value=0.265321	frequency=3.388e-01	ks_quality_p_value=0.169593	major_base=A	major_cov=76/45	major_frequency=6.612e-01	minor_base=G	minor_cov=33/29	new_cov=33/29	polymorphism_frequency=3.388e-01	polymorphism_score=127.6	prediction=polymorphism	ref_cov=76/45	total_cov=109/74
RA	598	.	Xen14_85	6588	0	T	C	bias_e_value=2036350	bias_p_value=0.410261	consensus_reject=FREQUENCY_CUTOFF	consensus_score=105.0	fisher_strand_p_value=0.137471	frequency=5.841e-01	ks_quality_p_value=1	major_base=C	major_cov=60/72	major_frequency=5.841e-01	minor_base=T	minor_cov=53/41	new_cov=60/72	polymorphism_frequency=5.841e-01	polymorphism_score=201.1	prediction=polymorphism	ref_cov=53/41	total_cov=113/113
RA	599	.	Xen14_85	6615	0	A	G	bias_e_value=2268070	bias_p_value=0.456946	consensus_reject=FREQUENCY_CUTOFF	consensus_score=88.6	fisher_strand_p_value=0.171719	frequency=5.760e-01	ks_quality_p_value=0.943656	major_base=G	major_cov=60/65	major_frequency=5.760e-01	minor_base=A	minor_cov=53/39	new_cov=60/65	polymorphism_frequency=5.760e-01	polymorphism_score=200.4	prediction=polymorphism	ref_cov=53/39	total_cov=113/104
RA	600	.	Xen14_85	6678	0	G	A	bias_e_value=4929900	bias_p_value=0.993224	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-4.6	fisher_strand_p_value=0.885867	frequency=5.026e-01	ks_quality_p_value=1	major_base=A	major_cov=48/49	major_frequency=5.026e-01	minor_base=G	minor_cov=49/47	new_cov=48/49	polymorphism_frequency=5.026e-01	polymorphism_score=219.0	prediction=polymorphism	ref_cov=49/47	total_cov=97/96
RA	601	.	Xen14_85	6693	0	T	A	bias_e_value=2873220	bias_p_value=0.578865	consensus_reject=FREQUENCY_CUTOFF	consensus_score=59.1	fisher_strand_p_value=1	frequency=4.489e-01	ks_quality_p_value=0.237457	major_base=T	major_cov=53/44	major_frequency=5.511e-01	minor_base=A	minor_cov=44/35	new_cov=44/35	polymorphism_frequency=4.489e-01	polymorphism_score=234.8	prediction=polymorphism	ref_cov=53/44	total_cov=98/79
RA	602	.	Xen14_85	6696	0	C	T	bias_e_value=1060530	bias_p_value=0.213664	consensus_reject=FREQUENCY_CUTOFF	consensus_score=42.6	fisher_strand_p_value=1	frequency=4.494e-01	ks_quality_p_value=0.0547042	major_base=C	major_cov=54/44	major_frequency=5.506e-01	minor_base=T	minor_cov=45/35	new_cov=45/35	polymorphism_frequency=4.494e-01	polymorphism_score=176.9	prediction=polymorphism	ref_cov=54/44	total_cov=99/79
RA	603	.	Xen14_85	6698	0	G	T	bias_e_value=837871	bias_p_value=0.168805	consensus_reject=FREQUENCY_CUTOFF	consensus_score=65.3	fisher_strand_p_value=1	frequency=4.520e-01	ks_quality_p_value=0.0400156	major_base=G	major_cov=54/43	major_frequency=5.480e-01	minor_base=T	minor_cov=45/35	new_cov=45/35	polymorphism_frequency=4.520e-01	polymorphism_score=236.9	prediction=polymorphism	ref_cov=54/43	total_cov=99/78
RA	604	.	Xen14_85	6699	0	G	T	bias_e_value=4010150	bias_p_value=0.807922	consensus_reject=FREQUENCY_CUTOFF	consensus_score=68.9	fisher_strand_p_value=1	frequency=4.545e-01	ks_quality_p_value=0.448243	major_base=G	major_cov=53/43	major_frequency=5.455e-01	minor_base=T	minor_cov=45/35	new_cov=45/35	polymorphism_frequency=4.545e-01	polymorphism_score=234.2	prediction=polymorphism	ref_cov=53/43	total_cov=99/78
RA	605	.	Xen14_85	6708	0	G	A	bias_e_value=3501270	bias_p_value=0.705399	consensus_reject=FREQUENCY_CUTOFF	consensus_score=17.3	fisher_strand_p_value=1	frequency=4.789e-01	ks_quality_p_value=0.338708	major_base=G	major_cov=56/43	major_frequency=5.211e-01	minor_base=A	minor_cov=51/40	new_cov=51/40	polymorphism_frequency=4.789e-01	polymorphism_score=204.3	prediction=polymorphism	ref_cov=56/43	total_cov=108/83
RA	606	.	Xen14_85	6717	0	C	A	bias_e_value=1633440	bias_p_value=0.329088	consensus_reject=FREQUENCY_CUTOFF	consensus_score=387.8	fisher_strand_p_value=0.0994922	frequency=2.475e-01	ks_quality_p_value=1	major_base=C	major_cov=82/70	major_frequency=7.525e-01	minor_base=A	minor_cov=34/16	new_cov=34/16	polymorphism_frequency=2.475e-01	polymorphism_score=124.5	prediction=polymorphism	ref_cov=82/70	total_cov=116/86
RA	607	.	Xen14_85	6729	0	G	A	bias_e_value=4652840	bias_p_value=0.937403	consensus_reject=FREQUENCY_CUTOFF	consensus_score=50.1	fisher_strand_p_value=0.667721	frequency=4.563e-01	ks_quality_p_value=1	major_base=G	major_cov=68/44	major_frequency=5.437e-01	minor_base=A	minor_cov=60/34	new_cov=60/34	polymorphism_frequency=4.563e-01	polymorphism_score=208.9	prediction=polymorphism	ref_cov=68/44	total_cov=128/78
RA	608	.	Xen14_85	6744	0	A	C	bias_e_value=1318120	bias_p_value=0.265561	consensus_reject=FREQUENCY_CUTOFF	consensus_score=88.4	fisher_strand_p_value=0.364445	frequency=4.211e-01	ks_quality_p_value=0.201877	major_base=A	major_cov=65/45	major_frequency=5.789e-01	minor_base=C	minor_cov=53/27	new_cov=53/27	polymorphism_frequency=4.211e-01	polymorphism_score=245.4	prediction=polymorphism	ref_cov=65/45	total_cov=118/72
RA	609	.	Xen14_85	6766	0	A	C	bias_e_value=4662260	bias_p_value=0.939302	consensus_reject=FREQUENCY_CUTOFF	consensus_score=49.0	fisher_strand_p_value=0.672464	frequency=4.571e-01	ks_quality_p_value=1	major_base=A	major_cov=66/48	major_frequency=5.429e-01	minor_base=C	minor_cov=59/37	new_cov=59/37	polymorphism_frequency=4.571e-01	polymorphism_score=294.4	prediction=polymorphism	ref_cov=66/48	total_cov=125/85
RA	610	.	Xen14_85	6783	0	G	C	bias_e_value=4664960	bias_p_value=0.939845	consensus_reject=FREQUENCY_CUTOFF	consensus_score=46.0	fisher_strand_p_value=0.673835	frequency=4.689e-01	ks_quality_p_value=1	major_base=G	major_cov=63/48	major_frequency=5.311e-01	minor_base=C	minor_cov=59/39	new_cov=59/39	polymorphism_frequency=4.689e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=63/48	total_cov=122/88
RA	611	.	Xen14_85	6793	0	T	A	bias_e_value=4663610	bias_p_value=0.939574	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=8.0	fisher_strand_p_value=0.673149	frequency=4.905e-01	ks_quality_p_value=1	major_base=T	major_cov=66/41	major_frequency=5.095e-01	minor_base=A	minor_cov=60/43	new_cov=60/43	polymorphism_frequency=4.905e-01	polymorphism_score=312.4	prediction=polymorphism	ref_cov=66/41	total_cov=126/84
RA	612	.	Xen14_85	6804	0	T	C	bias_e_value=4836040	bias_p_value=0.974313	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.3	fisher_strand_p_value=0.782076	frequency=5.231e-01	ks_quality_p_value=1	major_base=C	major_cov=65/48	major_frequency=5.231e-01	minor_base=T	minor_cov=62/41	new_cov=65/48	polymorphism_frequency=5.231e-01	polymorphism_score=229.6	prediction=polymorphism	ref_cov=62/41	total_cov=127/89
RA	613	.	Xen14_85	6821	0	C	T	bias_e_value=2008040	bias_p_value=0.404558	consensus_reject=FREQUENCY_CUTOFF	consensus_score=26.9	fisher_strand_p_value=0.134612	frequency=5.270e-01	ks_quality_p_value=1	major_base=T	major_cov=64/53	major_frequency=5.270e-01	minor_base=C	minor_cov=68/37	new_cov=64/53	polymorphism_frequency=5.270e-01	polymorphism_score=238.9	prediction=polymorphism	ref_cov=68/37	total_cov=132/90
RA	614	.	Xen14_85	6822	0	A	G	bias_e_value=2368050	bias_p_value=0.47709	consensus_reject=FREQUENCY_CUTOFF	consensus_score=31.6	fisher_strand_p_value=0.173324	frequency=5.247e-01	ks_quality_p_value=1	major_base=G	major_cov=64/53	major_frequency=5.247e-01	minor_base=A	minor_cov=68/38	new_cov=64/53	polymorphism_frequency=5.247e-01	polymorphism_score=235.7	prediction=polymorphism	ref_cov=68/38	total_cov=132/91
RA	615	.	Xen14_85	6837	0	T	C	bias_e_value=3398330	bias_p_value=0.684659	consensus_reject=FREQUENCY_CUTOFF	consensus_score=77.2	fisher_strand_p_value=0.506798	frequency=5.660e-01	ks_quality_p_value=0.631484	major_base=C	major_cov=73/60	major_frequency=5.660e-01	minor_base=T	minor_cov=61/41	new_cov=73/60	polymorphism_frequency=5.660e-01	polymorphism_score=225.6	prediction=polymorphism	ref_cov=61/41	total_cov=134/101
RA	616	.	Xen14_85	6843	0	A	G	bias_e_value=4481590	bias_p_value=0.902902	consensus_reject=FREQUENCY_CUTOFF	consensus_score=77.0	fisher_strand_p_value=0.604816	frequency=5.569e-01	ks_quality_p_value=0.980538	major_base=G	major_cov=75/62	major_frequency=5.569e-01	minor_base=A	minor_cov=64/45	new_cov=75/62	polymorphism_frequency=5.569e-01	polymorphism_score=240.8	prediction=polymorphism	ref_cov=64/45	total_cov=139/107
RA	617	.	Xen14_85	6852	0	C	T	bias_e_value=3764590	bias_p_value=0.75845	consensus_reject=FREQUENCY_CUTOFF	consensus_score=79.0	fisher_strand_p_value=0.434941	frequency=5.661e-01	ks_quality_p_value=0.899663	major_base=T	major_cov=72/65	major_frequency=5.661e-01	minor_base=C	minor_cov=61/44	new_cov=72/65	polymorphism_frequency=5.661e-01	polymorphism_score=232.6	prediction=polymorphism	ref_cov=61/44	total_cov=133/109
RA	618	.	Xen14_85	6858	0	A	G	bias_e_value=2821170	bias_p_value=0.56838	consensus_reject=FREQUENCY_CUTOFF	consensus_score=119.3	fisher_strand_p_value=0.23566	frequency=5.900e-01	ks_quality_p_value=0.977004	major_base=G	major_cov=70/71	major_frequency=5.900e-01	minor_base=A	minor_cov=57/41	new_cov=70/71	polymorphism_frequency=5.900e-01	polymorphism_score=212.5	prediction=polymorphism	ref_cov=57/41	total_cov=127/112
RA	619	.	Xen14_85	6867	0	G	A	bias_e_value=2754410	bias_p_value=0.554929	consensus_reject=FREQUENCY_CUTOFF	consensus_score=110.1	fisher_strand_p_value=0.234774	frequency=5.872e-01	ks_quality_p_value=0.942205	major_base=A	major_cov=67/71	major_frequency=5.872e-01	minor_base=G	minor_cov=55/42	new_cov=67/71	polymorphism_frequency=5.872e-01	polymorphism_score=212.4	prediction=polymorphism	ref_cov=55/42	total_cov=122/113
RA	620	.	Xen14_85	6876	0	C	T	bias_e_value=3184080	bias_p_value=0.641493	consensus_reject=FREQUENCY_CUTOFF	consensus_score=125.8	fisher_strand_p_value=0.284418	frequency=5.991e-01	ks_quality_p_value=0.998528	major_base=T	major_cov=64/75	major_frequency=5.991e-01	minor_base=C	minor_cov=50/43	new_cov=64/75	polymorphism_frequency=5.991e-01	polymorphism_score=199.4	prediction=polymorphism	ref_cov=50/43	total_cov=114/118
RA	621	.	Xen14_85	6912	0	T	C	bias_e_value=948965	bias_p_value=0.191187	consensus_reject=FREQUENCY_CUTOFF	consensus_score=186.0	fisher_strand_p_value=0.0471569	frequency=6.296e-01	ks_quality_p_value=1	major_base=C	major_cov=63/90	major_frequency=6.296e-01	minor_base=T	minor_cov=49/41	new_cov=63/90	polymorphism_frequency=6.296e-01	polymorphism_score=186.0	prediction=polymorphism	ref_cov=49/41	total_cov=113/131
RA	622	.	Xen14_85	6915	0	T	C	bias_e_value=1184270	bias_p_value=0.238595	consensus_reject=FREQUENCY_CUTOFF	consensus_score=175.6	fisher_strand_p_value=0.0635157	frequency=6.230e-01	ks_quality_p_value=1	major_base=C	major_cov=63/89	major_frequency=6.230e-01	minor_base=T	minor_cov=50/42	new_cov=63/89	polymorphism_frequency=6.230e-01	polymorphism_score=189.7	prediction=polymorphism	ref_cov=50/42	total_cov=113/131
RA	623	.	Xen14_85	6926	0	C	T	bias_e_value=865280	bias_p_value=0.174327	consensus_reject=FREQUENCY_CUTOFF	consensus_score=183.8	fisher_strand_p_value=0.0417428	frequency=6.264e-01	ks_quality_p_value=1	major_base=T	major_cov=67/99	major_frequency=6.264e-01	minor_base=C	minor_cov=53/46	new_cov=67/99	polymorphism_frequency=6.264e-01	polymorphism_score=201.6	prediction=polymorphism	ref_cov=53/46	total_cov=120/146
RA	624	.	Xen14_85	6930	0	G	A	bias_e_value=578721	bias_p_value=0.116594	consensus_reject=FREQUENCY_CUTOFF	consensus_score=184.8	fisher_strand_p_value=0.02483	frequency=6.168e-01	ks_quality_p_value=1	major_base=A	major_cov=69/100	major_frequency=6.168e-01	minor_base=G	minor_cov=58/47	new_cov=69/100	polymorphism_frequency=6.168e-01	polymorphism_score=221.0	prediction=polymorphism	ref_cov=58/47	total_cov=128/147
RA	625	.	Xen14_85	6936	0	G	A	bias_e_value=2775090	bias_p_value=0.559094	consensus_reject=FREQUENCY_CUTOFF	consensus_score=195.5	fisher_strand_p_value=0.223977	frequency=6.167e-01	ks_quality_p_value=1	major_base=A	major_cov=75/102	major_frequency=6.167e-01	minor_base=G	minor_cov=55/55	new_cov=75/102	polymorphism_frequency=6.167e-01	polymorphism_score=225.5	prediction=polymorphism	ref_cov=55/55	total_cov=130/157
RA	626	.	Xen14_85	6978	0	C	T	bias_e_value=3665630	bias_p_value=0.738511	consensus_reject=FREQUENCY_CUTOFF	consensus_score=203.6	fisher_strand_p_value=0.370642	frequency=6.391e-01	ks_quality_p_value=1	major_base=T	major_cov=73/97	major_frequency=6.391e-01	minor_base=C	minor_cov=47/49	new_cov=73/97	polymorphism_frequency=6.391e-01	polymorphism_score=202.4	prediction=polymorphism	ref_cov=47/49	total_cov=120/146
RA	627	.	Xen14_85	6981	0	C	T	bias_e_value=3314950	bias_p_value=0.66786	consensus_reject=FREQUENCY_CUTOFF	consensus_score=220.9	fisher_strand_p_value=0.305581	frequency=6.429e-01	ks_quality_p_value=1	major_base=T	major_cov=73/98	major_frequency=6.429e-01	minor_base=C	minor_cov=47/48	new_cov=73/98	polymorphism_frequency=6.429e-01	polymorphism_score=186.5	prediction=polymorphism	ref_cov=47/48	total_cov=120/146
RA	628	.	Xen14_85	7107	0	A	G	bias_e_value=3197200	bias_p_value=0.644137	consensus_reject=FREQUENCY_CUTOFF	consensus_score=243.2	fisher_strand_p_value=0.286106	frequency=2.090e-01	ks_quality_p_value=1	major_base=A	major_cov=59/47	major_frequency=7.910e-01	minor_base=G	minor_cov=19/9	new_cov=19/9	polymorphism_frequency=2.090e-01	polymorphism_score=46.4	prediction=polymorphism	ref_cov=59/47	total_cov=78/56
RA	629	.	Xen14_85	7446	0	T	G	bias_e_value=3841670	bias_p_value=0.773978	consensus_reject=FREQUENCY_CUTOFF	consensus_score=320.5	fisher_strand_p_value=0.831821	frequency=2.000e-01	ks_quality_p_value=0.490773	major_base=T	major_cov=48/64	major_frequency=8.000e-01	minor_base=G	minor_cov=11/17	new_cov=11/17	polymorphism_frequency=2.000e-01	polymorphism_score=70.5	prediction=polymorphism	ref_cov=48/64	total_cov=59/81
RA	630	.	Xen14_85	7463	0	T	C	bias_e_value=3339950	bias_p_value=0.672896	consensus_reject=FREQUENCY_CUTOFF	consensus_score=231.7	fisher_strand_p_value=0.843901	frequency=2.500e-01	ks_quality_p_value=0.367169	major_base=T	major_cov=46/59	major_frequency=7.500e-01	minor_base=C	minor_cov=14/21	new_cov=14/21	polymorphism_frequency=2.500e-01	polymorphism_score=65.1	prediction=polymorphism	ref_cov=46/59	total_cov=60/81
RA	631	.	Xen14_85	7567	0	C	T	bias_e_value=2966510	bias_p_value=0.59766	consensus_reject=FREQUENCY_CUTOFF	consensus_score=12.3	fisher_strand_p_value=0.252973	frequency=5.098e-01	ks_quality_p_value=0.99135	major_base=T	major_cov=67/37	major_frequency=5.098e-01	minor_base=C	minor_cov=56/44	new_cov=67/37	polymorphism_frequency=5.098e-01	polymorphism_score=227.6	prediction=polymorphism	ref_cov=56/44	total_cov=123/81
RA	632	.	Xen14_85	7570	0	G	A	bias_e_value=2842730	bias_p_value=0.572722	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=6.4	fisher_strand_p_value=0.25046	frequency=5.172e-01	ks_quality_p_value=0.931128	major_base=A	major_cov=68/37	major_frequency=5.172e-01	minor_base=G	minor_cov=55/43	new_cov=68/37	polymorphism_frequency=5.172e-01	polymorphism_score=223.6	prediction=polymorphism	ref_cov=55/43	total_cov=123/80
RA	633	.	Xen14_85	7573	0	C	T	bias_e_value=2995930	bias_p_value=0.603588	consensus_reject=FREQUENCY_CUTOFF	consensus_score=19.8	fisher_strand_p_value=0.257271	frequency=5.024e-01	ks_quality_p_value=0.991549	major_base=T	major_cov=67/37	major_frequency=5.024e-01	minor_base=C	minor_cov=58/45	new_cov=67/37	polymorphism_frequency=5.024e-01	polymorphism_score=234.5	prediction=polymorphism	ref_cov=58/45	total_cov=125/82
RA	634	.	Xen14_85	7581	0	T	C	bias_e_value=3074490	bias_p_value=0.619415	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=2.1	fisher_strand_p_value=0.266878	frequency=5.225e-01	ks_quality_p_value=1	major_base=C	major_cov=77/39	major_frequency=5.225e-01	minor_base=T	minor_cov=62/44	new_cov=77/39	polymorphism_frequency=5.225e-01	polymorphism_score=240.2	prediction=polymorphism	ref_cov=62/44	total_cov=139/83
RA	635	.	Xen14_85	7585	0	A	G	bias_e_value=4404720	bias_p_value=0.887415	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=3.2	fisher_strand_p_value=0.581462	frequency=5.247e-01	ks_quality_p_value=0.971206	major_base=G	major_cov=76/41	major_frequency=5.247e-01	minor_base=A	minor_cov=65/41	new_cov=76/41	polymorphism_frequency=5.247e-01	polymorphism_score=239.3	prediction=polymorphism	ref_cov=65/41	total_cov=141/82
RA	636	.	Xen14_85	7588	0	T	C	bias_e_value=4697430	bias_p_value=0.946387	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-5.4	fisher_strand_p_value=0.782872	frequency=5.198e-01	ks_quality_p_value=0.882588	major_base=C	major_cov=77/41	major_frequency=5.198e-01	minor_base=T	minor_cov=69/40	new_cov=77/41	polymorphism_frequency=5.198e-01	polymorphism_score=246.4	prediction=polymorphism	ref_cov=69/40	total_cov=146/81
RA	637	.	Xen14_85	7609	0	A	G	bias_e_value=4665130	bias_p_value=0.93988	consensus_reject=FREQUENCY_CUTOFF	consensus_score=50.1	fisher_strand_p_value=0.691631	frequency=5.494e-01	ks_quality_p_value=0.9744	major_base=G	major_cov=92/47	major_frequency=5.494e-01	minor_base=A	minor_cov=72/42	new_cov=92/47	polymorphism_frequency=5.494e-01	polymorphism_score=253.5	prediction=polymorphism	ref_cov=72/42	total_cov=164/89
RA	638	.	Xen14_85	7645	0	T	C	bias_e_value=4936690	bias_p_value=0.99459	consensus_reject=FREQUENCY_CUTOFF	consensus_score=94.8	fisher_strand_p_value=0.897809	frequency=5.704e-01	ks_quality_p_value=0.999994	major_base=C	major_cov=104/54	major_frequency=5.704e-01	minor_base=T	minor_cov=80/39	new_cov=104/54	polymorphism_frequency=5.704e-01	polymorphism_score=259.6	prediction=polymorphism	ref_cov=80/39	total_cov=184/94
RA	639	.	Xen14_85	7681	0	G	T	bias_e_value=4903760	bias_p_value=0.987957	consensus_reject=FREQUENCY_CUTOFF	consensus_score=112.1	fisher_strand_p_value=0.904099	frequency=5.888e-01	ks_quality_p_value=0.938914	major_base=T	major_cov=113/66	major_frequency=5.888e-01	minor_base=G	minor_cov=80/45	new_cov=113/66	polymorphism_frequency=5.888e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=80/45	total_cov=193/111
RA	640	.	Xen14_85	7699	0	A	G	bias_e_value=4359610	bias_p_value=0.878328	consensus_reject=FREQUENCY_CUTOFF	consensus_score=113.0	fisher_strand_p_value=0.549194	frequency=5.793e-01	ks_quality_p_value=1	major_base=G	major_cov=117/62	major_frequency=5.793e-01	minor_base=A	minor_cov=80/50	new_cov=117/62	polymorphism_frequency=5.793e-01	polymorphism_score=277.8	prediction=polymorphism	ref_cov=80/50	total_cov=197/112
RA	641	.	Xen14_85	7801	0	T	G	bias_e_value=402719	bias_p_value=0.0811355	consensus_reject=FREQUENCY_CUTOFF	consensus_score=250.1	fisher_strand_p_value=0.026374	frequency=3.408e-01	ks_quality_p_value=0.597257	major_base=T	major_cov=58/60	major_frequency=6.592e-01	minor_base=G	minor_cov=41/20	new_cov=41/20	polymorphism_frequency=3.408e-01	polymorphism_score=171.0	prediction=polymorphism	ref_cov=58/60	total_cov=99/80
RA	642	.	Xen14_85	7816	0	A	G	bias_e_value=816818	bias_p_value=0.164564	consensus_reject=FREQUENCY_CUTOFF	consensus_score=239.8	fisher_strand_p_value=0.0696659	frequency=2.625e-01	ks_quality_p_value=0.555572	major_base=A	major_cov=61/57	major_frequency=7.375e-01	minor_base=G	minor_cov=29/13	new_cov=29/13	polymorphism_frequency=2.625e-01	polymorphism_score=78.7	prediction=polymorphism	ref_cov=61/57	total_cov=90/70
RA	643	.	Xen14_85	7891	0	C	T	bias_e_value=5.28306e-06	bias_p_value=1.06437e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=151.4	fisher_strand_p_value=3.32249e-14	frequency=2.642e-01	ks_quality_p_value=1	major_base=C	major_cov=17/61	major_frequency=7.358e-01	minor_base=T	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=2.642e-01	polymorphism_score=15.0	prediction=polymorphism	ref_cov=17/61	total_cov=54/61
RA	644	.	Xen14_85	8080	0	A	G	bias_e_value=3491780	bias_p_value=0.703486	consensus_reject=FREQUENCY_CUTOFF	consensus_score=193.8	fisher_strand_p_value=0.871121	frequency=3.218e-01	ks_quality_p_value=0.386795	major_base=A	major_cov=62/56	major_frequency=6.782e-01	minor_base=G	minor_cov=28/28	new_cov=28/28	polymorphism_frequency=3.218e-01	polymorphism_score=113.1	prediction=polymorphism	ref_cov=62/56	total_cov=90/84
RA	645	.	Xen14_85	8082	0	C	A	bias_e_value=4787810	bias_p_value=0.964595	consensus_reject=FREQUENCY_CUTOFF	consensus_score=271.0	fisher_strand_p_value=0.745984	frequency=3.218e-01	ks_quality_p_value=1	major_base=C	major_cov=63/55	major_frequency=6.782e-01	minor_base=A	minor_cov=28/28	new_cov=28/28	polymorphism_frequency=3.218e-01	polymorphism_score=152.9	prediction=polymorphism	ref_cov=63/55	total_cov=91/83
RA	646	.	Xen14_85	8169	0	C	A	bias_e_value=1267660	bias_p_value=0.255394	consensus_reject=FREQUENCY_CUTOFF	consensus_score=227.8	fisher_strand_p_value=0.0697166	frequency=3.777e-01	ks_quality_p_value=1	major_base=C	major_cov=71/46	major_frequency=6.223e-01	minor_base=A	minor_cov=33/38	new_cov=33/38	polymorphism_frequency=3.777e-01	polymorphism_score=200.4	prediction=polymorphism	ref_cov=71/46	total_cov=104/84
RA	647	.	Xen14_86	362	0	A	C	bias_e_value=1728700	bias_p_value=0.34828	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-2.7	fisher_strand_p_value=0.262254	frequency=5.043e-01	ks_quality_p_value=0.411665	major_base=C	major_cov=38/21	major_frequency=5.043e-01	minor_base=A	minor_cov=31/27	new_cov=38/21	polymorphism_frequency=5.043e-01	polymorphism_score=171.1	prediction=polymorphism	ref_cov=31/27	total_cov=69/48
RA	648	.	Xen14_86	375	0	G	A	bias_e_value=498573	bias_p_value=0.100447	consensus_reject=FREQUENCY_CUTOFF	consensus_score=13.2	fisher_strand_p_value=0.0633835	frequency=4.833e-01	ks_quality_p_value=0.324471	major_base=G	major_cov=32/30	major_frequency=5.167e-01	minor_base=A	minor_cov=40/18	new_cov=40/18	polymorphism_frequency=4.833e-01	polymorphism_score=125.8	prediction=polymorphism	ref_cov=32/30	total_cov=72/48
RA	649	.	Xen14_86	385	0	C	A	bias_e_value=361516	bias_p_value=0.0728344	consensus_reject=FREQUENCY_CUTOFF	consensus_score=39.7	fisher_strand_p_value=0.0249221	frequency=4.746e-01	ks_quality_p_value=0.55305	major_base=C	major_cov=30/32	major_frequency=5.254e-01	minor_base=A	minor_cov=39/17	new_cov=39/17	polymorphism_frequency=4.746e-01	polymorphism_score=156.7	prediction=polymorphism	ref_cov=30/32	total_cov=69/49
RA	650	.	Xen14_86	563	0	A	T	bias_e_value=1199180	bias_p_value=0.241597	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-1.6	fisher_strand_p_value=0.132874	frequency=5.091e-01	ks_quality_p_value=0.486239	major_base=T	major_cov=25/31	major_frequency=5.091e-01	minor_base=A	minor_cov=32/22	new_cov=25/31	polymorphism_frequency=5.091e-01	polymorphism_score=161.3	prediction=polymorphism	ref_cov=32/22	total_cov=57/53
RA	651	.	Xen14_86	3435	0	A	C	bias_e_value=8805.77	bias_p_value=0.00177409	consensus_reject=FREQUENCY_CUTOFF	consensus_score=19.2	fisher_strand_p_value=0.000646041	frequency=5.175e-01	ks_quality_p_value=0.286177	major_base=C	major_cov=35/39	major_frequency=5.175e-01	minor_base=A	minor_cov=52/17	new_cov=35/39	polymorphism_frequency=5.175e-01	polymorphism_score=204.9	prediction=polymorphism	ref_cov=52/17	total_cov=87/56
RA	652	.	Xen14_86	9216	0	A	G	bias_e_value=213433	bias_p_value=0.0430003	consensus_reject=FREQUENCY_CUTOFF	consensus_score=43.6	fisher_strand_p_value=0.0329994	frequency=4.318e-01	ks_quality_p_value=0.219894	major_base=A	major_cov=49/26	major_frequency=5.682e-01	minor_base=G	minor_cov=26/31	new_cov=26/31	polymorphism_frequency=4.318e-01	polymorphism_score=124.0	prediction=polymorphism	ref_cov=49/26	total_cov=75/57
RA	653	.	Xen14_86	9243	0	A	G	bias_e_value=219475	bias_p_value=0.0442174	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=8.6	fisher_strand_p_value=0.0156908	frequency=4.783e-01	ks_quality_p_value=0.478261	major_base=A	major_cov=49/23	major_frequency=5.217e-01	minor_base=G	minor_cov=31/35	new_cov=31/35	polymorphism_frequency=4.783e-01	polymorphism_score=149.3	prediction=polymorphism	ref_cov=49/23	total_cov=80/58
RA	654	.	Xen14_86	9278	0	G	T	bias_e_value=1481940	bias_p_value=0.298565	consensus_reject=FREQUENCY_CUTOFF	consensus_score=47.7	fisher_strand_p_value=0.412711	frequency=4.600e-01	ks_quality_p_value=0.209933	major_base=G	major_cov=47/34	major_frequency=5.400e-01	minor_base=T	minor_cov=35/34	new_cov=35/34	polymorphism_frequency=4.600e-01	polymorphism_score=204.4	prediction=polymorphism	ref_cov=47/34	total_cov=82/68
RA	655	.	Xen14_86	9295	0	G	A	bias_e_value=4785040	bias_p_value=0.964039	consensus_reject=FREQUENCY_CUTOFF	consensus_score=50.0	fisher_strand_p_value=0.744092	frequency=4.408e-01	ks_quality_p_value=1	major_base=G	major_cov=45/40	major_frequency=5.592e-01	minor_base=A	minor_cov=33/34	new_cov=33/34	polymorphism_frequency=4.408e-01	polymorphism_score=145.3	prediction=polymorphism	ref_cov=45/40	total_cov=78/74
RA	656	.	Xen14_86	9425	0	T	C	bias_e_value=197302	bias_p_value=0.0397502	consensus_reject=FREQUENCY_CUTOFF	consensus_score=69.3	fisher_strand_p_value=0.00660272	frequency=4.198e-01	ks_quality_p_value=1	major_base=T	major_cov=38/56	major_frequency=5.802e-01	minor_base=C	minor_cov=43/25	new_cov=43/25	polymorphism_frequency=4.198e-01	polymorphism_score=146.6	prediction=polymorphism	ref_cov=38/56	total_cov=81/81
RA	657	.	Xen14_86	9448	0	T	A	bias_e_value=502536	bias_p_value=0.101245	consensus_reject=FREQUENCY_CUTOFF	consensus_score=100.2	fisher_strand_p_value=0.120909	frequency=4.162e-01	ks_quality_p_value=0.171797	major_base=T	major_cov=50/51	major_frequency=5.838e-01	minor_base=A	minor_cov=45/27	new_cov=45/27	polymorphism_frequency=4.162e-01	polymorphism_score=210.0	prediction=polymorphism	ref_cov=50/51	total_cov=95/78
RA	658	.	Xen14_86	9457	0	G	A	bias_e_value=108799	bias_p_value=0.0219197	consensus_reject=FREQUENCY_CUTOFF	consensus_score=62.2	fisher_strand_p_value=0.023576	frequency=4.333e-01	ks_quality_p_value=0.138223	major_base=G	major_cov=49/53	major_frequency=5.667e-01	minor_base=A	minor_cov=51/27	new_cov=51/27	polymorphism_frequency=4.333e-01	polymorphism_score=170.4	prediction=polymorphism	ref_cov=49/53	total_cov=100/80
RA	659	.	Xen14_86	9472	0	C	T	bias_e_value=493021	bias_p_value=0.0993285	consensus_reject=FREQUENCY_CUTOFF	consensus_score=37.8	fisher_strand_p_value=0.0974875	frequency=4.576e-01	ks_quality_p_value=0.208012	major_base=C	major_cov=47/49	major_frequency=5.424e-01	minor_base=T	minor_cov=50/31	new_cov=50/31	polymorphism_frequency=4.576e-01	polymorphism_score=180.8	prediction=polymorphism	ref_cov=47/49	total_cov=97/80
RA	660	.	Xen14_86	9473	0	A	G	bias_e_value=1569340	bias_p_value=0.316173	consensus_reject=FREQUENCY_CUTOFF	consensus_score=39.8	fisher_strand_p_value=0.0939636	frequency=4.545e-01	ks_quality_p_value=1	major_base=A	major_cov=47/49	major_frequency=5.455e-01	minor_base=G	minor_cov=50/30	new_cov=50/30	polymorphism_frequency=4.545e-01	polymorphism_score=178.3	prediction=polymorphism	ref_cov=47/49	total_cov=97/80
RA	661	.	Xen14_86	9497	0	C	T	bias_e_value=1143480	bias_p_value=0.230377	consensus_reject=FREQUENCY_CUTOFF	consensus_score=26.1	fisher_strand_p_value=0.103765	frequency=4.703e-01	ks_quality_p_value=0.583623	major_base=C	major_cov=47/51	major_frequency=5.297e-01	minor_base=T	minor_cov=53/34	new_cov=53/34	polymorphism_frequency=4.703e-01	polymorphism_score=193.4	prediction=polymorphism	ref_cov=47/51	total_cov=100/85
RA	662	.	Xen14_86	9575	0	G	A	bias_e_value=3477530	bias_p_value=0.700616	consensus_reject=FREQUENCY_CUTOFF	consensus_score=91.1	fisher_strand_p_value=0.609728	frequency=3.862e-01	ks_quality_p_value=0.548304	major_base=G	major_cov=49/40	major_frequency=6.138e-01	minor_base=A	minor_cov=28/28	new_cov=28/28	polymorphism_frequency=3.862e-01	polymorphism_score=116.8	prediction=polymorphism	ref_cov=49/40	total_cov=77/68
RA	663	.	Xen14_86	9600	0	G	A	bias_e_value=2017090	bias_p_value=0.406382	consensus_reject=FREQUENCY_CUTOFF	consensus_score=87.3	fisher_strand_p_value=0.463273	frequency=3.750e-01	ks_quality_p_value=0.292535	major_base=G	major_cov=38/42	major_frequency=6.250e-01	minor_base=A	minor_cov=19/29	new_cov=19/29	polymorphism_frequency=3.750e-01	polymorphism_score=97.7	prediction=polymorphism	ref_cov=38/42	total_cov=57/71
RA	664	.	Xen14_86	9637	0	C	T	bias_e_value=1725050	bias_p_value=0.347545	consensus_reject=FREQUENCY_CUTOFF	consensus_score=157.3	fisher_strand_p_value=0.837078	frequency=2.645e-01	ks_quality_p_value=0.128579	major_base=C	major_cov=42/47	major_frequency=7.355e-01	minor_base=T	minor_cov=14/18	new_cov=14/18	polymorphism_frequency=2.645e-01	polymorphism_score=58.2	prediction=polymorphism	ref_cov=42/47	total_cov=56/65
RA	665	.	Xen14_86	9645	0	C	T	bias_e_value=3420090	bias_p_value=0.689042	consensus_reject=FREQUENCY_CUTOFF	consensus_score=162.7	fisher_strand_p_value=0.323903	frequency=2.778e-01	ks_quality_p_value=1	major_base=C	major_cov=46/45	major_frequency=7.222e-01	minor_base=T	minor_cov=14/21	new_cov=14/21	polymorphism_frequency=2.778e-01	polymorphism_score=62.7	prediction=polymorphism	ref_cov=46/45	total_cov=60/66
RA	666	.	Xen14_86	9674	0	G	T	bias_e_value=1787160	bias_p_value=0.360059	consensus_reject=FREQUENCY_CUTOFF	consensus_score=175.5	fisher_strand_p_value=0.398484	frequency=2.768e-01	ks_quality_p_value=0.284355	major_base=G	major_cov=43/38	major_frequency=7.232e-01	minor_base=T	minor_cov=13/18	new_cov=13/18	polymorphism_frequency=2.768e-01	polymorphism_score=77.9	prediction=polymorphism	ref_cov=43/38	total_cov=56/56
RA	667	.	Xen14_86	9694	0	T	C	bias_e_value=1101210	bias_p_value=0.22186	consensus_reject=FREQUENCY_CUTOFF	consensus_score=156.1	fisher_strand_p_value=0.533119	frequency=2.583e-01	ks_quality_p_value=0.107949	major_base=T	major_cov=41/48	major_frequency=7.417e-01	minor_base=C	minor_cov=12/19	new_cov=12/19	polymorphism_frequency=2.583e-01	polymorphism_score=57.1	prediction=polymorphism	ref_cov=41/48	total_cov=53/67
RA	668	.	Xen14_86	9713	0	A	G	bias_e_value=3295570	bias_p_value=0.663957	consensus_reject=FREQUENCY_CUTOFF	consensus_score=173.2	fisher_strand_p_value=0.302304	frequency=2.540e-01	ks_quality_p_value=1	major_base=A	major_cov=44/50	major_frequency=7.460e-01	minor_base=G	minor_cov=11/21	new_cov=11/21	polymorphism_frequency=2.540e-01	polymorphism_score=55.7	prediction=polymorphism	ref_cov=44/50	total_cov=55/71
RA	669	.	Xen14_86	9720	0	G	C	bias_e_value=3294100	bias_p_value=0.66366	consensus_reject=FREQUENCY_CUTOFF	consensus_score=266.4	fisher_strand_p_value=0.302056	frequency=2.385e-01	ks_quality_p_value=1	major_base=G	major_cov=47/52	major_frequency=7.615e-01	minor_base=C	minor_cov=11/20	new_cov=11/20	polymorphism_frequency=2.385e-01	polymorphism_score=88.2	prediction=polymorphism	ref_cov=47/52	total_cov=58/72
RA	670	.	Xen14_86	9799	0	A	G	bias_e_value=2839620	bias_p_value=0.572097	consensus_reject=FREQUENCY_CUTOFF	consensus_score=76.6	fisher_strand_p_value=0.232782	frequency=4.043e-01	ks_quality_p_value=1	major_base=A	major_cov=34/50	major_frequency=5.957e-01	minor_base=G	minor_cov=29/28	new_cov=29/28	polymorphism_frequency=4.043e-01	polymorphism_score=115.8	prediction=polymorphism	ref_cov=34/50	total_cov=63/78
RA	671	.	Xen14_86	9813	0	G	T	bias_e_value=1248510	bias_p_value=0.251536	consensus_reject=FREQUENCY_CUTOFF	consensus_score=104.5	fisher_strand_p_value=0.224081	frequency=3.942e-01	ks_quality_p_value=0.304683	major_base=G	major_cov=34/49	major_frequency=6.058e-01	minor_base=T	minor_cov=28/26	new_cov=28/26	polymorphism_frequency=3.942e-01	polymorphism_score=154.8	prediction=polymorphism	ref_cov=34/49	total_cov=63/75
RA	672	.	Xen14_87	7371	0	T	G	bias_e_value=1.40002e-14	bias_p_value=2.8206e-21	consensus_reject=FREQUENCY_CUTOFF	consensus_score=427.0	fisher_strand_p_value=5.39581e-23	frequency=2.045e-01	ks_quality_p_value=1	major_base=T	major_cov=119/21	major_frequency=7.955e-01	minor_base=G	minor_cov=0/36	new_cov=0/36	polymorphism_frequency=2.045e-01	polymorphism_score=19.2	prediction=polymorphism	ref_cov=119/21	total_cov=119/64
RA	673	.	Xen14_88	78	0	A	G	bias_e_value=4885810	bias_p_value=0.984341	consensus_reject=FREQUENCY_CUTOFF	consensus_score=24.1	fisher_strand_p_value=0.828332	frequency=5.176e-01	ks_quality_p_value=1	major_base=G	major_cov=21/23	major_frequency=5.176e-01	minor_base=A	minor_cov=18/23	new_cov=21/23	polymorphism_frequency=5.176e-01	polymorphism_score=89.7	prediction=polymorphism	ref_cov=18/23	total_cov=39/46
RA	674	.	Xen14_88	96	0	A	T	bias_e_value=4680170	bias_p_value=0.94291	consensus_reject=FREQUENCY_CUTOFF	consensus_score=93.7	fisher_strand_p_value=0.681716	frequency=4.583e-01	ks_quality_p_value=1	major_base=A	major_cov=22/30	major_frequency=5.417e-01	minor_base=T	minor_cov=21/23	new_cov=21/23	polymorphism_frequency=4.583e-01	polymorphism_score=128.0	prediction=polymorphism	ref_cov=22/30	total_cov=43/53
RA	675	.	Xen14_88	99	0	C	T	bias_e_value=4895630	bias_p_value=0.986318	consensus_reject=FREQUENCY_CUTOFF	consensus_score=65.1	fisher_strand_p_value=0.839206	frequency=4.490e-01	ks_quality_p_value=1	major_base=C	major_cov=24/30	major_frequency=5.510e-01	minor_base=T	minor_cov=21/23	new_cov=21/23	polymorphism_frequency=4.490e-01	polymorphism_score=92.8	prediction=polymorphism	ref_cov=24/30	total_cov=45/53
RA	676	.	Xen14_88	111	0	A	C	bias_e_value=3528920	bias_p_value=0.710969	consensus_reject=FREQUENCY_CUTOFF	consensus_score=118.9	fisher_strand_p_value=0.555623	frequency=4.231e-01	ks_quality_p_value=0.618925	major_base=A	major_cov=25/35	major_frequency=5.769e-01	minor_base=C	minor_cov=21/23	new_cov=21/23	polymorphism_frequency=4.231e-01	polymorphism_score=128.3	prediction=polymorphism	ref_cov=25/35	total_cov=46/58
RA	677	.	Xen14_88	114	0	G	A	bias_e_value=1147300	bias_p_value=0.231145	consensus_reject=FREQUENCY_CUTOFF	consensus_score=90.4	fisher_strand_p_value=0.693786	frequency=4.074e-01	ks_quality_p_value=0.0876841	major_base=G	major_cov=27/37	major_frequency=5.926e-01	minor_base=A	minor_cov=21/23	new_cov=21/23	polymorphism_frequency=4.074e-01	polymorphism_score=92.4	prediction=polymorphism	ref_cov=27/37	total_cov=48/60
RA	678	.	Xen14_88	129	0	T	G	bias_e_value=4901630	bias_p_value=0.987528	consensus_reject=FREQUENCY_CUTOFF	consensus_score=146.4	fisher_strand_p_value=0.846276	frequency=3.964e-01	ks_quality_p_value=1	major_base=T	major_cov=30/37	major_frequency=6.036e-01	minor_base=G	minor_cov=21/23	new_cov=21/23	polymorphism_frequency=3.964e-01	polymorphism_score=129.8	prediction=polymorphism	ref_cov=30/37	total_cov=51/60
RA	679	.	Xen14_88	130	0	A	G	bias_e_value=3893870	bias_p_value=0.784494	consensus_reject=FREQUENCY_CUTOFF	consensus_score=101.8	fisher_strand_p_value=0.846128	frequency=3.929e-01	ks_quality_p_value=0.496575	major_base=A	major_cov=30/38	major_frequency=6.071e-01	minor_base=G	minor_cov=21/23	new_cov=21/23	polymorphism_frequency=3.929e-01	polymorphism_score=92.5	prediction=polymorphism	ref_cov=30/38	total_cov=51/61
RA	680	.	Xen14_88	131	0	T	C	bias_e_value=4901630	bias_p_value=0.987528	consensus_reject=FREQUENCY_CUTOFF	consensus_score=100.0	fisher_strand_p_value=0.846276	frequency=3.964e-01	ks_quality_p_value=1	major_base=T	major_cov=30/37	major_frequency=6.036e-01	minor_base=C	minor_cov=21/23	new_cov=21/23	polymorphism_frequency=3.964e-01	polymorphism_score=89.4	prediction=polymorphism	ref_cov=30/37	total_cov=51/61
RA	681	.	Xen14_88	135	0	C	A	bias_e_value=4904180	bias_p_value=0.988041	consensus_reject=FREQUENCY_CUTOFF	consensus_score=176.0	fisher_strand_p_value=0.849386	frequency=3.846e-01	ks_quality_p_value=1	major_base=C	major_cov=33/39	major_frequency=6.154e-01	minor_base=A	minor_cov=22/23	new_cov=22/23	polymorphism_frequency=3.846e-01	polymorphism_score=119.7	prediction=polymorphism	ref_cov=33/39	total_cov=55/62
RA	682	.	Xen14_88	9245	0	C	T	bias_e_value=1859220	bias_p_value=0.374575	consensus_reject=FREQUENCY_CUTOFF	consensus_score=145.5	fisher_strand_p_value=0.459103	frequency=2.234e-01	ks_quality_p_value=0.261526	major_base=C	major_cov=37/36	major_frequency=7.766e-01	minor_base=T	minor_cov=13/8	new_cov=13/8	polymorphism_frequency=2.234e-01	polymorphism_score=35.0	prediction=polymorphism	ref_cov=37/36	total_cov=50/44
RA	683	.	Xen14_88	9286	0	C	T	bias_e_value=500463	bias_p_value=0.100828	consensus_reject=FREQUENCY_CUTOFF	consensus_score=23.4	fisher_strand_p_value=0.0369753	frequency=4.759e-01	ks_quality_p_value=0.558864	major_base=C	major_cov=47/40	major_frequency=5.241e-01	minor_base=T	minor_cov=56/23	new_cov=56/23	polymorphism_frequency=4.759e-01	polymorphism_score=176.7	prediction=polymorphism	ref_cov=47/40	total_cov=104/63
RA	684	.	Xen14_88	9314	0	G	A	bias_e_value=1475220	bias_p_value=0.297212	consensus_reject=FREQUENCY_CUTOFF	consensus_score=36.6	fisher_strand_p_value=0.11771	frequency=5.473e-01	ks_quality_p_value=0.731365	major_base=A	major_cov=68/42	major_frequency=5.473e-01	minor_base=G	minor_cov=46/45	new_cov=68/42	polymorphism_frequency=5.473e-01	polymorphism_score=202.5	prediction=polymorphism	ref_cov=46/45	total_cov=114/87
RA	685	.	Xen14_88	9462	0	T	G	bias_e_value=484142	bias_p_value=0.0975398	consensus_reject=FREQUENCY_CUTOFF	consensus_score=391.8	fisher_strand_p_value=0.0216292	frequency=2.742e-01	ks_quality_p_value=0.916405	major_base=T	major_cov=91/89	major_frequency=7.258e-01	minor_base=G	minor_cov=46/22	new_cov=46/22	polymorphism_frequency=2.742e-01	polymorphism_score=191.2	prediction=polymorphism	ref_cov=91/89	total_cov=138/112
RA	686	.	Xen14_88	9644	0	A	T	bias_e_value=728842	bias_p_value=0.146839	consensus_reject=FREQUENCY_CUTOFF	consensus_score=242.6	fisher_strand_p_value=0.25908	frequency=2.273e-01	ks_quality_p_value=0.128811	major_base=A	major_cov=36/49	major_frequency=7.727e-01	minor_base=T	minor_cov=14/11	new_cov=14/11	polymorphism_frequency=2.273e-01	polymorphism_score=61.7	prediction=polymorphism	ref_cov=36/49	total_cov=50/60
RA	687	.	Xen14_88	9657	0	G	A	bias_e_value=4891520	bias_p_value=0.98549	consensus_reject=FREQUENCY_CUTOFF	consensus_score=137.2	fisher_strand_p_value=0.834555	frequency=3.208e-01	ks_quality_p_value=1	major_base=G	major_cov=28/44	major_frequency=6.792e-01	minor_base=A	minor_cov=14/20	new_cov=14/20	polymorphism_frequency=3.208e-01	polymorphism_score=66.0	prediction=polymorphism	ref_cov=28/44	total_cov=42/64
RA	688	.	Xen14_88	9659	0	T	C	bias_e_value=3742250	bias_p_value=0.753947	consensus_reject=FREQUENCY_CUTOFF	consensus_score=137.3	fisher_strand_p_value=1	frequency=3.178e-01	ks_quality_p_value=0.386533	major_base=T	major_cov=29/44	major_frequency=6.822e-01	minor_base=C	minor_cov=14/20	new_cov=14/20	polymorphism_frequency=3.178e-01	polymorphism_score=66.7	prediction=polymorphism	ref_cov=29/44	total_cov=43/64
RA	689	.	Xen14_88	9744	0	A	G	bias_e_value=810629	bias_p_value=0.163317	consensus_reject=FREQUENCY_CUTOFF	consensus_score=34.7	fisher_strand_p_value=0.0383216	frequency=6.071e-01	ks_quality_p_value=1	major_base=G	major_cov=31/54	major_frequency=6.071e-01	minor_base=A	minor_cov=30/25	new_cov=31/54	polymorphism_frequency=6.071e-01	polymorphism_score=115.6	prediction=polymorphism	ref_cov=30/25	total_cov=61/79
RA	690	.	Xen14_88	9749	0	A	C	bias_e_value=360603	bias_p_value=0.0726504	consensus_reject=FREQUENCY_CUTOFF	consensus_score=22.8	fisher_strand_p_value=0.0353684	frequency=6.115e-01	ks_quality_p_value=0.388489	major_base=C	major_cov=31/54	major_frequency=6.115e-01	minor_base=A	minor_cov=30/24	new_cov=31/54	polymorphism_frequency=6.115e-01	polymorphism_score=153.9	prediction=polymorphism	ref_cov=30/24	total_cov=61/78
RA	691	.	Xen14_88	9756	0	T	G	bias_e_value=627525	bias_p_value=0.126427	consensus_reject=FREQUENCY_CUTOFF	consensus_score=59.4	fisher_strand_p_value=0.0275289	frequency=6.333e-01	ks_quality_p_value=1	major_base=G	major_cov=34/61	major_frequency=6.333e-01	minor_base=T	minor_cov=30/25	new_cov=34/61	polymorphism_frequency=6.333e-01	polymorphism_score=153.7	prediction=polymorphism	ref_cov=30/25	total_cov=64/86
RA	692	.	Xen14_88	9783	0	T	G	bias_e_value=101841	bias_p_value=0.0205178	consensus_reject=FREQUENCY_CUTOFF	consensus_score=26.6	fisher_strand_p_value=0.0142437	frequency=5.704e-01	ks_quality_p_value=0.211712	major_base=G	major_cov=23/58	major_frequency=5.704e-01	minor_base=T	minor_cov=30/31	new_cov=23/58	polymorphism_frequency=5.704e-01	polymorphism_score=175.2	prediction=polymorphism	ref_cov=30/31	total_cov=53/89
RA	693	.	Xen14_88	9823	0	G	T	bias_e_value=9245.07	bias_p_value=0.0018626	consensus_reject=FREQUENCY_CUTOFF	consensus_score=71.1	fisher_strand_p_value=0.00108811	frequency=4.261e-01	ks_quality_p_value=0.179405	major_base=G	major_cov=37/29	major_frequency=5.739e-01	minor_base=T	minor_cov=12/37	new_cov=12/37	polymorphism_frequency=4.261e-01	polymorphism_score=142.0	prediction=polymorphism	ref_cov=37/29	total_cov=49/66
RA	694	.	Xen14_88	9825	0	T	A	bias_e_value=73294.9	bias_p_value=0.0147667	consensus_reject=FREQUENCY_CUTOFF	consensus_score=64.0	fisher_strand_p_value=0.00205442	frequency=4.261e-01	ks_quality_p_value=1	major_base=T	major_cov=36/30	major_frequency=5.739e-01	minor_base=A	minor_cov=12/37	new_cov=12/37	polymorphism_frequency=4.261e-01	polymorphism_score=142.2	prediction=polymorphism	ref_cov=36/30	total_cov=48/67
RA	695	.	Xen14_88	9843	0	G	T	bias_e_value=830.01	bias_p_value=0.000167221	consensus_reject=FREQUENCY_CUTOFF	consensus_score=71.7	fisher_strand_p_value=0.00147482	frequency=4.037e-01	ks_quality_p_value=0.00929576	major_base=G	major_cov=35/30	major_frequency=5.963e-01	minor_base=T	minor_cov=10/34	new_cov=10/34	polymorphism_frequency=4.037e-01	polymorphism_score=125.8	prediction=polymorphism	ref_cov=35/30	total_cov=45/64
RA	696	.	Xen14_9	6871	0	A	C	bias_e_value=1.36322e-08	bias_p_value=2.74647e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=241.4	fisher_strand_p_value=7.19528e-17	frequency=2.364e-01	ks_quality_p_value=1	major_base=A	major_cov=11/73	major_frequency=7.636e-01	minor_base=C	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.364e-01	polymorphism_score=13.3	prediction=polymorphism	ref_cov=11/73	total_cov=43/73
RA	697	.	Xen14_96	1240	0	G	A	bias_e_value=3415060	bias_p_value=0.688029	consensus_reject=FREQUENCY_CUTOFF	consensus_score=60.9	fisher_strand_p_value=0.813082	frequency=3.973e-01	ks_quality_p_value=0.39726	major_base=G	major_cov=23/21	major_frequency=6.027e-01	minor_base=A	minor_cov=14/15	new_cov=14/15	polymorphism_frequency=3.973e-01	polymorphism_score=58.8	prediction=polymorphism	ref_cov=23/21	total_cov=37/37
RA	698	.	Xen14_96	1240	1	.	A	bias_e_value=3415060	bias_p_value=0.688029	consensus_reject=FREQUENCY_CUTOFF	consensus_score=119.7	fisher_strand_p_value=0.813082	frequency=3.973e-01	ks_quality_p_value=0.39726	major_base=.	major_cov=23/21	major_frequency=6.027e-01	minor_base=A	minor_cov=14/15	new_cov=14/15	polymorphism_frequency=3.973e-01	polymorphism_score=141.3	prediction=polymorphism	ref_cov=23/21	total_cov=37/36
RA	699	.	Xen14_96	1241	0	C	T	bias_e_value=3415060	bias_p_value=0.688029	consensus_reject=FREQUENCY_CUTOFF	consensus_score=59.3	fisher_strand_p_value=0.813082	frequency=3.973e-01	ks_quality_p_value=0.39726	major_base=C	major_cov=23/21	major_frequency=6.027e-01	minor_base=T	minor_cov=14/15	new_cov=14/15	polymorphism_frequency=3.973e-01	polymorphism_score=59.0	prediction=polymorphism	ref_cov=23/21	total_cov=37/36
RA	700	.	Xen14_96	1253	0	G	A	bias_e_value=4844880	bias_p_value=0.976095	consensus_reject=FREQUENCY_CUTOFF	consensus_score=74.4	fisher_strand_p_value=0.789467	frequency=3.226e-01	ks_quality_p_value=1	major_base=G	major_cov=23/19	major_frequency=6.774e-01	minor_base=A	minor_cov=10/10	new_cov=10/10	polymorphism_frequency=3.226e-01	polymorphism_score=36.3	prediction=polymorphism	ref_cov=23/19	total_cov=33/29
RA	701	.	Xen14_96	1254	0	G	A	bias_e_value=1391500	bias_p_value=0.280344	consensus_reject=FREQUENCY_CUTOFF	consensus_score=74.2	fisher_strand_p_value=0.789467	frequency=3.226e-01	ks_quality_p_value=0.100476	major_base=G	major_cov=23/19	major_frequency=6.774e-01	minor_base=A	minor_cov=10/10	new_cov=10/10	polymorphism_frequency=3.226e-01	polymorphism_score=36.8	prediction=polymorphism	ref_cov=23/19	total_cov=33/29
RA	702	.	Xen14_96	3247	0	C	T	bias_e_value=3740000	bias_p_value=0.753495	consensus_reject=FREQUENCY_CUTOFF	consensus_score=188.1	fisher_strand_p_value=1	frequency=2.155e-01	ks_quality_p_value=0.386057	major_base=C	major_cov=49/42	major_frequency=7.845e-01	minor_base=T	minor_cov=14/11	new_cov=14/11	polymorphism_frequency=2.155e-01	polymorphism_score=42.3	prediction=polymorphism	ref_cov=49/42	total_cov=63/53
RA	703	.	Xen14_96	3372	0	C	A	bias_e_value=1634430	bias_p_value=0.329287	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=5.2	fisher_strand_p_value=0.0995786	frequency=5.034e-01	ks_quality_p_value=1	major_base=A	major_cov=33/41	major_frequency=5.034e-01	minor_base=C	minor_cov=43/30	new_cov=33/41	polymorphism_frequency=5.034e-01	polymorphism_score=227.2	prediction=polymorphism	ref_cov=43/30	total_cov=76/71
RA	704	.	Xen14_96	3435	0	A	G	bias_e_value=699203	bias_p_value=0.140868	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=4.2	fisher_strand_p_value=0.599889	frequency=5.149e-01	ks_quality_p_value=0.0527259	major_base=G	major_cov=42/27	major_frequency=5.149e-01	minor_base=A	minor_cov=36/29	new_cov=42/27	polymorphism_frequency=5.149e-01	polymorphism_score=146.0	prediction=polymorphism	ref_cov=36/29	total_cov=78/56
RA	705	.	Xen14_96	3513	0	G	A	bias_e_value=4152380	bias_p_value=0.836577	consensus_reject=FREQUENCY_CUTOFF	consensus_score=20.7	fisher_strand_p_value=0.485869	frequency=4.706e-01	ks_quality_p_value=1	major_base=G	major_cov=40/32	major_frequency=5.294e-01	minor_base=A	minor_cov=40/24	new_cov=40/24	polymorphism_frequency=4.706e-01	polymorphism_score=139.4	prediction=polymorphism	ref_cov=40/32	total_cov=80/56
RA	706	.	Xen14_96	3721	0	T	C	bias_e_value=2708160	bias_p_value=0.54561	consensus_reject=FREQUENCY_CUTOFF	consensus_score=84.1	fisher_strand_p_value=0.616192	frequency=3.986e-01	ks_quality_p_value=0.349054	major_base=T	major_cov=41/48	major_frequency=6.014e-01	minor_base=C	minor_cov=30/29	new_cov=30/29	polymorphism_frequency=3.986e-01	polymorphism_score=126.3	prediction=polymorphism	ref_cov=41/48	total_cov=71/77
RA	707	.	Xen14_96	3739	0	A	G	bias_e_value=3287790	bias_p_value=0.662389	consensus_reject=FREQUENCY_CUTOFF	consensus_score=78.8	fisher_strand_p_value=0.73744	frequency=4.082e-01	ks_quality_p_value=0.408163	major_base=A	major_cov=43/44	major_frequency=5.918e-01	minor_base=G	minor_cov=32/28	new_cov=32/28	polymorphism_frequency=4.082e-01	polymorphism_score=129.9	prediction=polymorphism	ref_cov=43/44	total_cov=75/72
RA	708	.	Xen14_96	3815	0	A	G	bias_e_value=936597	bias_p_value=0.188695	consensus_reject=FREQUENCY_CUTOFF	consensus_score=185.0	fisher_strand_p_value=0.455147	frequency=2.797e-01	ks_quality_p_value=0.101821	major_base=A	major_cov=53/50	major_frequency=7.203e-01	minor_base=G	minor_cov=24/16	new_cov=24/16	polymorphism_frequency=2.797e-01	polymorphism_score=77.0	prediction=polymorphism	ref_cov=53/50	total_cov=77/66
RA	709	.	Xen14_96	3853	0	A	G	bias_e_value=592355	bias_p_value=0.119341	consensus_reject=FREQUENCY_CUTOFF	consensus_score=107.8	fisher_strand_p_value=0.0255763	frequency=3.798e-01	ks_quality_p_value=1	major_base=A	major_cov=42/38	major_frequency=6.202e-01	minor_base=G	minor_cov=36/13	new_cov=36/13	polymorphism_frequency=3.798e-01	polymorphism_score=100.7	prediction=polymorphism	ref_cov=42/38	total_cov=78/51
RA	710	.	Xen14_96	3856	0	C	A	bias_e_value=1152280	bias_p_value=0.23215	consensus_reject=FREQUENCY_CUTOFF	consensus_score=184.2	fisher_strand_p_value=0.0611932	frequency=3.643e-01	ks_quality_p_value=1	major_base=C	major_cov=45/37	major_frequency=6.357e-01	minor_base=A	minor_cov=34/13	new_cov=34/13	polymorphism_frequency=3.643e-01	polymorphism_score=127.2	prediction=polymorphism	ref_cov=45/37	total_cov=79/50
RA	711	.	Xen14_96	3859	0	G	C	bias_e_value=1533510	bias_p_value=0.308955	consensus_reject=FREQUENCY_CUTOFF	consensus_score=184.8	fisher_strand_p_value=0.0909323	frequency=3.730e-01	ks_quality_p_value=1	major_base=G	major_cov=45/34	major_frequency=6.270e-01	minor_base=C	minor_cov=34/13	new_cov=34/13	polymorphism_frequency=3.730e-01	polymorphism_score=145.5	prediction=polymorphism	ref_cov=45/34	total_cov=80/47
RA	712	.	Xen14_96	3913	0	G	A	bias_e_value=201133	bias_p_value=0.0405222	consensus_reject=FREQUENCY_CUTOFF	consensus_score=90.9	fisher_strand_p_value=0.00675685	frequency=3.483e-01	ks_quality_p_value=1	major_base=G	major_cov=27/31	major_frequency=6.517e-01	minor_base=A	minor_cov=24/7	new_cov=24/7	polymorphism_frequency=3.483e-01	polymorphism_score=60.7	prediction=polymorphism	ref_cov=27/31	total_cov=51/38
RA	713	.	Xen14_96	3922	0	G	A	bias_e_value=48554.1	bias_p_value=0.00978216	consensus_reject=FREQUENCY_CUTOFF	consensus_score=86.8	fisher_strand_p_value=0.00279461	frequency=3.448e-01	ks_quality_p_value=0.456746	major_base=G	major_cov=26/31	major_frequency=6.552e-01	minor_base=A	minor_cov=24/6	new_cov=24/6	polymorphism_frequency=3.448e-01	polymorphism_score=55.1	prediction=polymorphism	ref_cov=26/31	total_cov=50/37
RA	714	.	Xen14_96	3959	0	G	C	bias_e_value=139563	bias_p_value=0.0281176	consensus_reject=FREQUENCY_CUTOFF	consensus_score=152.3	fisher_strand_p_value=0.0081034	frequency=2.262e-01	ks_quality_p_value=0.539403	major_base=G	major_cov=32/33	major_frequency=7.738e-01	minor_base=C	minor_cov=16/3	new_cov=16/3	polymorphism_frequency=2.262e-01	polymorphism_score=51.0	prediction=polymorphism	ref_cov=32/33	total_cov=48/36
RA	715	.	Xen14_96	3970	0	G	A	bias_e_value=389676	bias_p_value=0.0785078	consensus_reject=FREQUENCY_CUTOFF	consensus_score=129.3	fisher_strand_p_value=0.0151221	frequency=2.022e-01	ks_quality_p_value=1	major_base=G	major_cov=35/36	major_frequency=7.978e-01	minor_base=A	minor_cov=15/3	new_cov=15/3	polymorphism_frequency=2.022e-01	polymorphism_score=26.7	prediction=polymorphism	ref_cov=35/36	total_cov=50/39
RA	716	.	Xen14_96	4041	0	T	C	bias_e_value=3485250	bias_p_value=0.70217	consensus_reject=FREQUENCY_CUTOFF	consensus_score=243.5	fisher_strand_p_value=0.850431	frequency=2.229e-01	ks_quality_p_value=0.394785	major_base=T	major_cov=65/57	major_frequency=7.771e-01	minor_base=C	minor_cov=18/17	new_cov=18/17	polymorphism_frequency=2.229e-01	polymorphism_score=61.4	prediction=polymorphism	ref_cov=65/57	total_cov=83/74
RA	717	.	Xen14_96	4058	0	T	C	bias_e_value=4755910	bias_p_value=0.958169	consensus_reject=FREQUENCY_CUTOFF	consensus_score=279.3	fisher_strand_p_value=0.725066	frequency=2.253e-01	ks_quality_p_value=1	major_base=T	major_cov=80/61	major_frequency=7.747e-01	minor_base=C	minor_cov=22/19	new_cov=22/19	polymorphism_frequency=2.253e-01	polymorphism_score=67.3	prediction=polymorphism	ref_cov=80/61	total_cov=102/80
RA	718	.	Xen14_96	4060	0	T	C	bias_e_value=3057710	bias_p_value=0.616034	consensus_reject=FREQUENCY_CUTOFF	consensus_score=284.1	fisher_strand_p_value=0.858944	frequency=2.216e-01	ks_quality_p_value=0.307737	major_base=T	major_cov=81/63	major_frequency=7.784e-01	minor_base=C	minor_cov=22/19	new_cov=22/19	polymorphism_frequency=2.216e-01	polymorphism_score=73.3	prediction=polymorphism	ref_cov=81/63	total_cov=103/82
RA	719	.	Xen14_96	4078	0	A	G	bias_e_value=2476570	bias_p_value=0.498953	consensus_reject=FREQUENCY_CUTOFF	consensus_score=289.2	fisher_strand_p_value=1	frequency=2.388e-01	ks_quality_p_value=0.186059	major_base=A	major_cov=91/62	major_frequency=7.612e-01	minor_base=G	minor_cov=28/20	new_cov=28/20	polymorphism_frequency=2.388e-01	polymorphism_score=90.2	prediction=polymorphism	ref_cov=91/62	total_cov=119/83
RA	720	.	Xen14_96	4081	0	T	C	bias_e_value=624176	bias_p_value=0.125752	consensus_reject=FREQUENCY_CUTOFF	consensus_score=142.0	fisher_strand_p_value=0.117908	frequency=7.044e-01	ks_quality_p_value=0.231886	major_base=C	major_cov=80/63	major_frequency=7.044e-01	minor_base=T	minor_cov=41/19	new_cov=80/63	polymorphism_frequency=7.044e-01	polymorphism_score=116.4	prediction=polymorphism	ref_cov=41/19	total_cov=121/82
RA	721	.	Xen14_96	4088	0	C	G	bias_e_value=3552180	bias_p_value=0.715656	consensus_reject=FREQUENCY_CUTOFF	consensus_score=397.8	fisher_strand_p_value=0.627131	frequency=2.512e-01	ks_quality_p_value=0.555397	major_base=C	major_cov=91/64	major_frequency=7.488e-01	minor_base=G	minor_cov=28/24	new_cov=28/24	polymorphism_frequency=2.512e-01	polymorphism_score=151.8	prediction=polymorphism	ref_cov=91/64	total_cov=123/90
RA	722	.	Xen14_96	4119	0	C	T	bias_e_value=3088090	bias_p_value=0.622155	consensus_reject=FREQUENCY_CUTOFF	consensus_score=288.7	fisher_strand_p_value=0.635023	frequency=2.657e-01	ks_quality_p_value=0.423542	major_base=C	major_cov=87/65	major_frequency=7.343e-01	minor_base=T	minor_cov=29/26	new_cov=29/26	polymorphism_frequency=2.657e-01	polymorphism_score=102.6	prediction=polymorphism	ref_cov=87/65	total_cov=116/91
RA	723	.	Xen14_96	4157	0	G	A	bias_e_value=1823360	bias_p_value=0.367351	consensus_reject=FREQUENCY_CUTOFF	consensus_score=39.4	fisher_strand_p_value=0.567196	frequency=4.646e-01	ks_quality_p_value=0.205718	major_base=G	major_cov=56/50	major_frequency=5.354e-01	minor_base=A	minor_cov=53/39	new_cov=53/39	polymorphism_frequency=4.646e-01	polymorphism_score=204.6	prediction=polymorphism	ref_cov=56/50	total_cov=109/89
RA	724	.	Xen14_96	4180	0	G	T	bias_e_value=2478080	bias_p_value=0.499257	consensus_reject=FREQUENCY_CUTOFF	consensus_score=16.0	fisher_strand_p_value=0.18624	frequency=5.105e-01	ks_quality_p_value=1	major_base=T	major_cov=61/36	major_frequency=5.105e-01	minor_base=G	minor_cov=49/44	new_cov=61/36	polymorphism_frequency=5.105e-01	polymorphism_score=291.3	prediction=polymorphism	ref_cov=49/44	total_cov=110/81
RA	725	.	Xen14_96	4185	0	G	A	bias_e_value=1393390	bias_p_value=0.280724	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=3.7	fisher_strand_p_value=0.189014	frequency=5.000e-01	ks_quality_p_value=0.420459	major_base=G	major_cov=50/46	major_frequency=5.000e-01	minor_base=A	minor_cov=60/36	new_cov=60/36	polymorphism_frequency=5.000e-01	polymorphism_score=217.5	prediction=polymorphism	ref_cov=50/46	total_cov=110/82
RA	726	.	Xen14_96	4370	0	G	A	bias_e_value=4055630	bias_p_value=0.817085	consensus_reject=FREQUENCY_CUTOFF	consensus_score=105.9	fisher_strand_p_value=0.459848	frequency=4.041e-01	ks_quality_p_value=1	major_base=G	major_cov=49/66	major_frequency=5.959e-01	minor_base=A	minor_cov=29/49	new_cov=29/49	polymorphism_frequency=4.041e-01	polymorphism_score=166.4	prediction=polymorphism	ref_cov=49/66	total_cov=79/115
RA	727	.	Xen14_96	4649	0	G	A	bias_e_value=632342	bias_p_value=0.127397	consensus_reject=FREQUENCY_CUTOFF	consensus_score=74.9	fisher_strand_p_value=0.167436	frequency=6.058e-01	ks_quality_p_value=0.166031	major_base=A	major_cov=44/39	major_frequency=6.058e-01	minor_base=G	minor_cov=22/32	new_cov=44/39	polymorphism_frequency=6.058e-01	polymorphism_score=114.9	prediction=polymorphism	ref_cov=22/32	total_cov=66/71
RA	728	.	Xen14_96	4936	0	A	G	bias_e_value=4963540	bias_p_value=1	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-5.0	fisher_strand_p_value=1	frequency=5.000e-01	ks_quality_p_value=1	major_base=G	major_cov=27/22	major_frequency=5.000e-01	minor_base=A	minor_cov=26/23	new_cov=27/22	polymorphism_frequency=5.000e-01	polymorphism_score=109.2	prediction=polymorphism	ref_cov=26/23	total_cov=53/46
RA	729	.	Xen14_96	5239	0	G	A	bias_e_value=76928.2	bias_p_value=0.0154987	consensus_reject=FREQUENCY_CUTOFF	consensus_score=262.1	fisher_strand_p_value=0.0186251	frequency=2.553e-01	ks_quality_p_value=0.116684	major_base=G	major_cov=64/76	major_frequency=7.447e-01	minor_base=A	minor_cov=32/16	new_cov=32/16	polymorphism_frequency=2.553e-01	polymorphism_score=89.5	prediction=polymorphism	ref_cov=64/76	total_cov=96/92
RA	730	.	Xen14_96	5260	0	G	A	bias_e_value=3185720	bias_p_value=0.641825	consensus_reject=FREQUENCY_CUTOFF	consensus_score=206.6	fisher_strand_p_value=0.284263	frequency=3.512e-01	ks_quality_p_value=1	major_base=G	major_cov=79/78	major_frequency=6.488e-01	minor_base=A	minor_cov=49/36	new_cov=49/36	polymorphism_frequency=3.512e-01	polymorphism_score=172.8	prediction=polymorphism	ref_cov=79/78	total_cov=128/114
RA	731	.	Xen14_96	5290	0	A	G	bias_e_value=4766870	bias_p_value=0.960377	consensus_reject=FREQUENCY_CUTOFF	consensus_score=269.0	fisher_strand_p_value=0.789867	frequency=3.140e-01	ks_quality_p_value=0.926784	major_base=A	major_cov=95/82	major_frequency=6.860e-01	minor_base=G	minor_cov=42/39	new_cov=42/39	polymorphism_frequency=3.140e-01	polymorphism_score=165.3	prediction=polymorphism	ref_cov=95/82	total_cov=137/121
RA	732	.	Xen14_96	5293	0	G	A	bias_e_value=4844480	bias_p_value=0.976013	consensus_reject=FREQUENCY_CUTOFF	consensus_score=280.9	fisher_strand_p_value=0.789121	frequency=3.127e-01	ks_quality_p_value=1	major_base=G	major_cov=96/82	major_frequency=6.873e-01	minor_base=A	minor_cov=42/39	new_cov=42/39	polymorphism_frequency=3.127e-01	polymorphism_score=159.3	prediction=polymorphism	ref_cov=96/82	total_cov=138/121
RA	733	.	Xen14_96	5633	0	A	G	bias_e_value=626081	bias_p_value=0.126136	consensus_reject=FREQUENCY_CUTOFF	consensus_score=122.0	fisher_strand_p_value=0.645005	frequency=2.680e-01	ks_quality_p_value=0.0425547	major_base=A	major_cov=41/30	major_frequency=7.320e-01	minor_base=G	minor_cov=13/13	new_cov=13/13	polymorphism_frequency=2.680e-01	polymorphism_score=47.6	prediction=polymorphism	ref_cov=41/30	total_cov=54/43
RA	734	.	Xen14_96	5874	0	A	T	bias_e_value=417967	bias_p_value=0.0842076	consensus_reject=FREQUENCY_CUTOFF	consensus_score=78.7	fisher_strand_p_value=0.0164964	frequency=3.696e-01	ks_quality_p_value=1	major_base=A	major_cov=20/38	major_frequency=6.304e-01	minor_base=T	minor_cov=21/13	new_cov=21/13	polymorphism_frequency=3.696e-01	polymorphism_score=93.8	prediction=polymorphism	ref_cov=20/38	total_cov=41/51
RA	735	.	Xen14_96	5876	0	G	A	bias_e_value=231313	bias_p_value=0.0466025	consensus_reject=FREQUENCY_CUTOFF	consensus_score=59.6	fisher_strand_p_value=0.0171148	frequency=3.736e-01	ks_quality_p_value=0.467142	major_base=G	major_cov=20/37	major_frequency=6.264e-01	minor_base=A	minor_cov=21/13	new_cov=21/13	polymorphism_frequency=3.736e-01	polymorphism_score=67.7	prediction=polymorphism	ref_cov=20/37	total_cov=41/50
RA	736	.	Xen14_96	5881	0	A	C	bias_e_value=140076	bias_p_value=0.028221	consensus_reject=FREQUENCY_CUTOFF	consensus_score=87.6	fisher_strand_p_value=0.00439004	frequency=3.511e-01	ks_quality_p_value=1	major_base=A	major_cov=18/43	major_frequency=6.489e-01	minor_base=C	minor_cov=20/13	new_cov=20/13	polymorphism_frequency=3.511e-01	polymorphism_score=94.7	prediction=polymorphism	ref_cov=18/43	total_cov=39/56
RA	737	.	Xen14_96	5896	0	T	A	bias_e_value=107196	bias_p_value=0.0215966	consensus_reject=FREQUENCY_CUTOFF	consensus_score=100.3	fisher_strand_p_value=0.00320241	frequency=3.564e-01	ks_quality_p_value=1	major_base=T	major_cov=21/44	major_frequency=6.436e-01	minor_base=A	minor_cov=23/13	new_cov=23/13	polymorphism_frequency=3.564e-01	polymorphism_score=99.2	prediction=polymorphism	ref_cov=21/44	total_cov=44/57
RA	738	.	Xen14_96	6530	0	C	T	bias_e_value=131280	bias_p_value=0.026449	consensus_reject=FREQUENCY_CUTOFF	consensus_score=170.8	fisher_strand_p_value=0.00406586	frequency=2.456e-01	ks_quality_p_value=1	major_base=C	major_cov=53/33	major_frequency=7.544e-01	minor_base=T	minor_cov=8/20	new_cov=8/20	polymorphism_frequency=2.456e-01	polymorphism_score=49.1	prediction=polymorphism	ref_cov=53/33	total_cov=61/53
RA	739	.	Xen14_98	6171	0	C	T	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=312.1	fisher_strand_p_value=1	frequency=2.706e-01	ks_quality_p_value=1	major_base=C	major_cov=84/75	major_frequency=7.294e-01	minor_base=T	minor_cov=31/28	new_cov=31/28	polymorphism_frequency=2.706e-01	polymorphism_score=111.4	prediction=polymorphism	ref_cov=84/75	total_cov=115/103
RA	740	.	Xen14_98	6276	0	C	T	bias_e_value=4770640	bias_p_value=0.961138	consensus_reject=FREQUENCY_CUTOFF	consensus_score=15.5	fisher_strand_p_value=0.734489	frequency=5.159e-01	ks_quality_p_value=1	major_base=T	major_cov=74/88	major_frequency=5.159e-01	minor_base=C	minor_cov=73/79	new_cov=74/88	polymorphism_frequency=5.159e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=73/79	total_cov=147/167
RA	741	.	Xen14_98	6285	0	C	T	bias_e_value=4767950	bias_p_value=0.960595	consensus_reject=FREQUENCY_CUTOFF	consensus_score=12.3	fisher_strand_p_value=0.737043	frequency=4.937e-01	ks_quality_p_value=0.994159	major_base=C	major_cov=79/81	major_frequency=5.063e-01	minor_base=T	minor_cov=74/82	new_cov=74/82	polymorphism_frequency=4.937e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=79/81	total_cov=153/164
RA	742	.	Xen14_98	6322	0	T	C	bias_e_value=1932190	bias_p_value=0.389277	consensus_reject=FREQUENCY_CUTOFF	consensus_score=56.1	fisher_strand_p_value=0.127099	frequency=5.342e-01	ks_quality_p_value=1	major_base=C	major_cov=70/86	major_frequency=5.342e-01	minor_base=T	minor_cov=74/62	new_cov=70/86	polymorphism_frequency=5.342e-01	polymorphism_score=305.1	prediction=polymorphism	ref_cov=74/62	total_cov=144/148
RA	743	.	Xen14_98	6333	0	A	G	bias_e_value=3508670	bias_p_value=0.706889	consensus_reject=FREQUENCY_CUTOFF	consensus_score=37.1	fisher_strand_p_value=0.341835	frequency=5.246e-01	ks_quality_p_value=0.994887	major_base=G	major_cov=70/79	major_frequency=5.246e-01	minor_base=A	minor_cov=72/63	new_cov=70/79	polymorphism_frequency=5.246e-01	polymorphism_score=302.9	prediction=polymorphism	ref_cov=72/63	total_cov=142/143
RA	744	.	Xen14_98	6351	0	G	A	bias_e_value=4689940	bias_p_value=0.944878	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-0.6	fisher_strand_p_value=0.707841	frequency=4.961e-01	ks_quality_p_value=0.970419	major_base=G	major_cov=67/61	major_frequency=5.039e-01	minor_base=A	minor_cov=69/57	new_cov=69/57	polymorphism_frequency=4.961e-01	polymorphism_score=284.7	prediction=polymorphism	ref_cov=67/61	total_cov=136/118
RA	745	.	Xen14_98	6374	0	G	A	bias_e_value=4865860	bias_p_value=0.980321	consensus_reject=FREQUENCY_CUTOFF	consensus_score=23.7	fisher_strand_p_value=0.808284	frequency=5.201e-01	ks_quality_p_value=1	major_base=A	major_cov=74/68	major_frequency=5.201e-01	minor_base=G	minor_cov=71/60	new_cov=74/68	polymorphism_frequency=5.201e-01	polymorphism_score=295.0	prediction=polymorphism	ref_cov=71/60	total_cov=145/128
RA	746	.	Xen14_98	6471	0	C	T	bias_e_value=4021320	bias_p_value=0.810173	consensus_reject=FREQUENCY_CUTOFF	consensus_score=19.5	fisher_strand_p_value=0.48927	frequency=5.161e-01	ks_quality_p_value=0.921901	major_base=T	major_cov=90/70	major_frequency=5.161e-01	minor_base=C	minor_cov=91/59	new_cov=90/70	polymorphism_frequency=5.161e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=91/59	total_cov=181/130
RA	747	.	Xen14_98	6517	0	A	G	bias_e_value=3163400	bias_p_value=0.637327	consensus_reject=FREQUENCY_CUTOFF	consensus_score=49.6	fisher_strand_p_value=0.328915	frequency=5.446e-01	ks_quality_p_value=0.853427	major_base=G	major_cov=76/46	major_frequency=5.446e-01	minor_base=A	minor_cov=70/32	new_cov=76/46	polymorphism_frequency=5.446e-01	polymorphism_score=227.1	prediction=polymorphism	ref_cov=70/32	total_cov=146/78
MC	748	.	Xen14_126	1	161	0	0	left_inside_cov=0	left_outside_cov=NA	right_inside_cov=72	right_outside_cov=75
MC	749	.	Xen14_170	581	619	0	0	left_inside_cov=16	left_outside_cov=88	right_inside_cov=0	right_outside_cov=NA
MC	750	.	Xen14_189	447	453	0	0	left_inside_cov=78	left_outside_cov=170	right_inside_cov=0	right_outside_cov=NA
MC	751	.	Xen14_197	403	433	0	0	left_inside_cov=16	left_outside_cov=77	right_inside_cov=0	right_outside_cov=NA
MC	752	.	Xen14_23	73962	73975	0	0	left_inside_cov=18	left_outside_cov=419	right_inside_cov=0	right_outside_cov=NA
MC	753	.	Xen14_31	1	26	0	0	left_inside_cov=0	left_outside_cov=NA	right_inside_cov=33	right_outside_cov=457
MC	754	.	Xen14_32	55357	55391	0	0	left_inside_cov=22	left_outside_cov=24	right_inside_cov=0	right_outside_cov=NA
MC	755	.	Xen14_33	53190	53241	0	0	left_inside_cov=36	left_outside_cov=98	right_inside_cov=0	right_outside_cov=NA
MC	756	.	Xen14_46	40325	40351	0	0	left_inside_cov=17	left_outside_cov=55	right_inside_cov=0	right_outside_cov=NA
MC	757	.	Xen14_58	1	41	0	0	left_inside_cov=0	left_outside_cov=NA	right_inside_cov=68	right_outside_cov=71
MC	758	.	Xen14_60	1	31	0	0	left_inside_cov=0	left_outside_cov=NA	right_inside_cov=12	right_outside_cov=52
MC	759	.	Xen14_62	1	43	0	0	left_inside_cov=0	left_outside_cov=NA	right_inside_cov=9	right_outside_cov=42
MC	760	.	Xen14_67	1	27	0	0	left_inside_cov=0	left_outside_cov=NA	right_inside_cov=8	right_outside_cov=54
MC	761	.	Xen14_69	1	49	0	0	left_inside_cov=0	left_outside_cov=NA	right_inside_cov=41	right_outside_cov=42
MC	762	.	Xen14_70	1	51	0	0	left_inside_cov=0	left_outside_cov=NA	right_inside_cov=24	right_outside_cov=26
MC	763	.	Xen14_76	1	32	0	0	left_inside_cov=0	left_outside_cov=NA	right_inside_cov=20	right_outside_cov=172
MC	764	.	Xen14_79	12270	12553	0	0	left_inside_cov=80	left_outside_cov=82	right_inside_cov=0	right_outside_cov=NA
MC	765	.	Xen14_82	11933	11983	0	0	left_inside_cov=43	left_outside_cov=127	right_inside_cov=0	right_outside_cov=NA
MC	766	.	Xen14_83	11240	11356	0	0	left_inside_cov=42	left_outside_cov=46	right_inside_cov=0	right_outside_cov=NA
JC	767	.	Xen14_1	1	1	Xen14_25	73164	1	-25	alignment_overlap=-25	coverage_minus=17	coverage_plus=10	flanking_left=150	flanking_right=77	frequency=1	junction_possible_overlap_registers=123	key=Xen14_1__1__1__Xen14_25__73164__1__-25__CAAAATGAATCAATCTTTACTTTCT__150__77__0__1	max_left=123	max_left_minus=123	max_left_plus=122	max_min_left=62	max_min_left_minus=62	max_min_left_plus=54	max_min_right=62	max_min_right_minus=60	max_min_right_plus=62	max_pos_hash_score=246	max_right=77	max_right_minus=77	max_right_plus=75	neg_log10_pos_hash_p_value=0.8	new_junction_coverage=0.63	new_junction_read_count=33	polymorphism_frequency=1.000e+00	pos_hash_score=23	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=27	unique_read_sequence=CAAAATGAATCAATCTTTACTTTCT
JC	768	.	Xen14_1	121778	1	Xen14_168	1	1	-48	alignment_overlap=-48	coverage_minus=11	coverage_plus=7	flanking_left=150	flanking_right=150	frequency=5.313e-01	junction_possible_overlap_registers=100	key=Xen14_1__121778__1__Xen14_168__1__1__-48__TAAATATCCTCCGGCATAGCCGGAGGTTTTTCAAATGCGCCTATAAGG__150__150__0__0	max_left=88	max_left_minus=88	max_left_plus=57	max_min_left=47	max_min_left_minus=47	max_min_left_plus=29	max_min_right=50	max_min_right_minus=46	max_min_right_plus=50	max_pos_hash_score=200	max_right=96	max_right_minus=96	max_right_plus=95	neg_log10_pos_hash_p_value=2.1	new_junction_coverage=0.04	new_junction_read_count=18	polymorphism_frequency=5.313e-01	pos_hash_score=14	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.68	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=47	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=18	unique_read_sequence=TAAATATCCTCCGGCATAGCCGGAGGTTTTTCAAATGCGCCTATAAGG
JC	769	.	Xen14_1	241843	-1	Xen14_47	36191	1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=1	flanking_left=150	flanking_right=84	frequency=1.333e-01	junction_possible_overlap_registers=148	key=Xen14_1__241843__-1__Xen14_47__36191__1__0____150__84__0__0	max_left=68	max_left_minus=68	max_left_plus=66	max_min_left=68	max_min_left_minus=68	max_min_left_plus=66	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=296	max_right=84	max_right_minus=84	max_right_plus=84	neg_log10_pos_hash_p_value=7.8	new_junction_coverage=0.11	new_junction_read_count=11	polymorphism_frequency=1.333e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.89	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=62	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.59	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=81	side_2_redundant=0	total_non_overlap_reads=5
JC	770	.	Xen14_1	242479	-1	Xen14_186	394	1	0	alignment_overlap=5	coverage_minus=155	coverage_plus=147	flanking_left=150	flanking_right=72	frequency=2.394e-01	junction_possible_overlap_registers=143	key=Xen14_1__242479__-1__Xen14_186__389__1__5____150__72__0__1	max_left=144	max_left_minus=144	max_left_plus=144	max_min_left=66	max_min_left_minus=66	max_min_left_plus=55	max_min_right=72	max_min_right_minus=72	max_min_right_plus=72	max_pos_hash_score=286	max_right=72	max_right_minus=72	max_right_plus=72	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=4.75	new_junction_read_count=347	polymorphism_frequency=2.394e-01	pos_hash_score=103	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=16.42	side_1_overlap=5	side_1_possible_overlap_registers=148	side_1_read_count=1141	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=302
JC	771	.	Xen14_1	242480	1	Xen14_105	4697	1	0	alignment_overlap=0	coverage_minus=107	coverage_plus=174	flanking_left=77	flanking_right=150	frequency=7.321e-01	junction_possible_overlap_registers=148	key=Xen14_1__242480__1__Xen14_105__4697__1__0____77__150__1__0	max_left=77	max_left_minus=77	max_left_plus=77	max_min_left=74	max_min_left_minus=74	max_min_left_plus=74	max_min_right=75	max_min_right_minus=75	max_min_right_plus=75	max_pos_hash_score=296	max_right=149	max_right_minus=149	max_right_plus=148	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=2.99	new_junction_read_count=328	polymorphism_frequency=7.321e-01	pos_hash_score=107	prediction=polymorphism	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.80	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=120	side_2_redundant=0	total_non_overlap_reads=281
JC	772	.	Xen14_10	471	-1	Xen14_23	73961	-1	0	alignment_overlap=14	coverage_minus=216	coverage_plus=169	flanking_left=150	flanking_right=150	frequency=6.095e-01	junction_possible_overlap_registers=134	key=Xen14_10__471__-1__Xen14_23__73975__-1__14____150__150__0__0	max_left=135	max_left_minus=135	max_left_plus=135	max_min_left=67	max_min_left_minus=67	max_min_left_plus=64	max_min_right=68	max_min_right_minus=68	max_min_right_plus=68	max_pos_hash_score=268	max_right=135	max_right_minus=135	max_right_plus=134	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=3.21	new_junction_read_count=395	polymorphism_frequency=6.095e-01	pos_hash_score=157	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=3.45	side_1_overlap=14	side_1_possible_overlap_registers=148	side_1_read_count=559	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=134	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=385
JC	773	.	Xen14_10	107217	-1	Xen14_123	2714	-1	-16	alignment_overlap=-16	coverage_minus=123	coverage_plus=90	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=132	key=Xen14_10__107217__-1__Xen14_123__2714__-1__-16__TGAGTTCGGCATGGGA__150__150__0__0	max_left=132	max_left_minus=132	max_left_plus=132	max_min_left=66	max_min_left_minus=66	max_min_left_plus=66	max_min_right=67	max_min_right_minus=67	max_min_right_plus=67	max_pos_hash_score=264	max_right=133	max_right_minus=133	max_right_plus=133	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=0.43	new_junction_read_count=217	polymorphism_frequency=1.000e+00	pos_hash_score=120	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=213	unique_read_sequence=TGAGTTCGGCATGGGA
JC	774	.	Xen14_10	107217	-1	Xen14_123	2714	-1	-16	alignment_overlap=-16	coverage_minus=12	coverage_plus=11	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=132	key=Xen14_10__107217__-1__Xen14_123__2714__-1__-16__TGAGTTCGGCATGGGG__150__150__0__0	max_left=129	max_left_minus=119	max_left_plus=129	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=53	max_min_right_minus=53	max_min_right_plus=47	max_pos_hash_score=264	max_right=53	max_right_minus=53	max_right_plus=47	neg_log10_pos_hash_p_value=9.9	new_junction_coverage=0.05	new_junction_read_count=23	polymorphism_frequency=1.000e+00	pos_hash_score=18	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=23	unique_read_sequence=TGAGTTCGGCATGGGG
JC	775	.	Xen14_101	2667	-1	Xen14_101	2672	-1	0	alignment_overlap=11	coverage_minus=5	coverage_plus=8	flanking_left=150	flanking_right=150	frequency=2.257e-02	junction_possible_overlap_registers=137	key=Xen14_101__2667__-1__Xen14_101__2683__-1__11____150__150__0__0	max_left=133	max_left_minus=119	max_left_plus=133	max_min_left=1	max_min_left_minus=1	max_min_left_plus=0	max_min_right=56	max_min_right_minus=56	max_min_right_plus=43	max_pos_hash_score=274	max_right=138	max_right_minus=138	max_right_plus=43	neg_log10_pos_hash_p_value=20.9	new_junction_coverage=0.02	new_junction_read_count=14	polymorphism_frequency=2.257e-02	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.75	side_1_overlap=11	side_1_possible_overlap_registers=148	side_1_read_count=639	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.78	side_2_overlap=0	side_2_possible_overlap_registers=137	side_2_read_count=621	side_2_redundant=0	total_non_overlap_reads=13
JC	776	.	Xen14_101	3360	-1	Xen14_101	3404	-1	0	alignment_overlap=6	coverage_minus=2	coverage_plus=4	flanking_left=150	flanking_right=150	frequency=8.879e-03	junction_possible_overlap_registers=142	key=Xen14_101__3360__-1__Xen14_101__3410__-1__6____150__150__0__0	max_left=140	max_left_minus=140	max_left_plus=95	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=60	max_min_right_minus=11	max_min_right_plus=60	max_pos_hash_score=284	max_right=60	max_right_minus=11	max_right_plus=60	neg_log10_pos_hash_p_value=23.3	new_junction_coverage=0.01	new_junction_read_count=6	polymorphism_frequency=8.879e-03	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.82	side_1_overlap=6	side_1_possible_overlap_registers=148	side_1_read_count=704	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=142	side_2_read_count=664	side_2_redundant=0	total_non_overlap_reads=6
JC	777	.	Xen14_102	5552	-1	Xen14_141	1	1	-8	alignment_overlap=-8	coverage_minus=17	coverage_plus=18	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=140	key=Xen14_102__5552__-1__Xen14_141__1__1__-8__AGGAGAGC__150__150__0__0	max_left=134	max_left_minus=134	max_left_plus=107	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=65	max_min_right_minus=65	max_min_right_plus=65	max_pos_hash_score=280	max_right=65	max_right_minus=65	max_right_plus=65	neg_log10_pos_hash_p_value=1.6	new_junction_coverage=0.05	new_junction_read_count=43	polymorphism_frequency=1.000e+00	pos_hash_score=18	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=35	unique_read_sequence=AGGAGAGC
JC	778	.	Xen14_105	91	-1	Xen14_168	629	-1	-1	alignment_overlap=-1	coverage_minus=3	coverage_plus=5	flanking_left=91	flanking_right=150	frequency=2.622e-01	junction_possible_overlap_registers=147	key=Xen14_105__91__-1__Xen14_168__629__-1__-1__G__91__150__0__0	max_left=7	max_left_minus=3	max_left_plus=7	max_min_left=7	max_min_left_minus=3	max_min_left_plus=7	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=294	max_right=148	max_right_minus=148	max_right_plus=148	neg_log10_pos_hash_p_value=16.8	new_junction_coverage=0.02	new_junction_read_count=12	polymorphism_frequency=2.622e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.45	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=68	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=8	unique_read_sequence=G
JC	779	.	Xen14_105	3419	1	Xen14_37	180	1	-3	alignment_overlap=-3	coverage_minus=9	coverage_plus=14	flanking_left=150	flanking_right=150	frequency=2.227e-01	junction_possible_overlap_registers=145	key=Xen14_105__3419__1__Xen14_37__180__1__-3__GCT__150__150__0__0	max_left=146	max_left_minus=135	max_left_plus=146	max_min_left=3	max_min_left_minus=0	max_min_left_plus=3	max_min_right=57	max_min_right_minus=56	max_min_right_plus=57	max_pos_hash_score=290	max_right=108	max_right_minus=56	max_right_plus=108	neg_log10_pos_hash_p_value=4.7	new_junction_coverage=0.21	new_junction_read_count=24	polymorphism_frequency=2.227e-01	pos_hash_score=17	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.63	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=95	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.87	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=76	side_2_redundant=0	total_non_overlap_reads=23	unique_read_sequence=GCT
JC	780	.	Xen14_105	3419	1	Xen14_52	23417	-1	0	alignment_overlap=1	coverage_minus=7	coverage_plus=5	flanking_left=150	flanking_right=150	frequency=2.965e-01	junction_possible_overlap_registers=147	key=Xen14_105__3419__1__Xen14_52__23418__-1__1____150__150__0__0	max_left=147	max_left_minus=146	max_left_plus=147	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=22	max_min_right_minus=19	max_min_right_plus=22	max_pos_hash_score=294	max_right=22	max_right_minus=19	max_right_plus=22	neg_log10_pos_hash_p_value=10.6	new_junction_coverage=0.27	new_junction_read_count=38	polymorphism_frequency=2.965e-01	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.63	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=95	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.64	side_2_overlap=0	side_2_possible_overlap_registers=147	side_2_read_count=86	side_2_redundant=0	total_non_overlap_reads=12
JC	781	.	Xen14_105	3420	1	Xen14_49	56	1	0	alignment_overlap=55	coverage_minus=26	coverage_plus=74	flanking_left=150	flanking_right=150	frequency=7.493e-01	junction_possible_overlap_registers=93	key=Xen14_105__3420__1__Xen14_49__1__1__55____150__150__0__0	max_left=94	max_left_minus=94	max_left_plus=94	max_min_left=44	max_min_left_minus=44	max_min_left_plus=43	max_min_right=42	max_min_right_minus=42	max_min_right_plus=40	max_pos_hash_score=186	max_right=93	max_right_minus=88	max_right_plus=93	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.30	new_junction_read_count=123	polymorphism_frequency=7.493e-01	pos_hash_score=52	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.87	side_1_overlap=55	side_1_possible_overlap_registers=148	side_1_read_count=131	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=93	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=100
JC	782	.	Xen14_105	3625	-1	Xen14_115	3560	1	-70	alignment_overlap=-70	coverage_minus=33	coverage_plus=13	flanking_left=150	flanking_right=74	frequency=2.015e-01	junction_possible_overlap_registers=78	key=Xen14_105__3625__-1__Xen14_115__3560__1__-70__GTTCTCCATTACCGCATTATCAAGGCAGTTGCCCTTGCGCGACATGCTCTGCACTAACCCTCTGTCCGCC__150__74__0__0	max_left=79	max_left_minus=79	max_left_plus=79	max_min_left=39	max_min_left_minus=39	max_min_left_plus=35	max_min_right=40	max_min_right_minus=40	max_min_right_plus=38	max_pos_hash_score=156	max_right=74	max_right_minus=74	max_right_plus=70	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.66	new_junction_read_count=48	polymorphism_frequency=2.015e-01	pos_hash_score=34	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=4.39	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=658	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.52	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=64	side_2_redundant=0	total_non_overlap_reads=46	unique_read_sequence=GTTCTCCATTACCGCATTATCAAGGCAGTTGCCCTTGCGCGACATGCTCTGCACTAACCCTCTGTCCGCC
JC	783	.	Xen14_105	3688	1	Xen14_12	188	-1	-1	alignment_overlap=-1	coverage_minus=41	coverage_plus=41	flanking_left=150	flanking_right=150	frequency=3.287e-01	junction_possible_overlap_registers=147	key=Xen14_105__3688__1__Xen14_12__188__-1__-1__G__150__150__0__0	max_left=49	max_left_minus=48	max_left_plus=49	max_min_left=49	max_min_left_minus=48	max_min_left_plus=49	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=294	max_right=148	max_right_minus=148	max_right_plus=148	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=1.02	new_junction_read_count=115	polymorphism_frequency=3.287e-01	pos_hash_score=42	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=2.69	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=403	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.90	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=70	side_2_redundant=0	total_non_overlap_reads=82	unique_read_sequence=G
JC	784	.	Xen14_105	3695	-1	Xen14_16	81842	1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=1	flanking_left=150	flanking_right=100	frequency=7.595e-02	junction_possible_overlap_registers=148	key=Xen14_105__3695__-1__Xen14_16__81842__1__0____150__100__0__0	max_left=52	max_left_minus=52	max_left_plus=50	max_min_left=52	max_min_left_minus=52	max_min_left_plus=50	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=296	max_right=100	max_right_minus=100	max_right_plus=100	neg_log10_pos_hash_p_value=12.3	new_junction_coverage=0.14	new_junction_read_count=18	polymorphism_frequency=7.595e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=2.38	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=357	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=81	side_2_redundant=0	total_non_overlap_reads=3
JC	785	.	Xen14_105	4985	1	Xen14_175	74	-1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=8	flanking_left=77	flanking_right=74	frequency=NA	junction_possible_overlap_registers=148	key=Xen14_105__4985__1__Xen14_175__74__-1__0____77__74__1__1	max_left=77	max_left_minus=75	max_left_plus=77	max_min_left=73	max_min_left_minus=73	max_min_left_plus=70	max_min_right=74	max_min_right_minus=74	max_min_right_plus=69	max_pos_hash_score=296	max_right=74	max_right_minus=74	max_right_plus=71	neg_log10_pos_hash_p_value=10.2	new_junction_coverage=0.13	new_junction_read_count=15	polymorphism_frequency=NA	pos_hash_score=7	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=10
JC	786	.	Xen14_105	4985	1	Xen14_191	128	1	0	alignment_overlap=0	coverage_minus=18	coverage_plus=14	flanking_left=77	flanking_right=150	frequency=3.846e-01	junction_possible_overlap_registers=148	key=Xen14_105__4985__1__Xen14_191__128__1__0____77__150__1__0	max_left=77	max_left_minus=68	max_left_plus=77	max_min_left=68	max_min_left_minus=68	max_min_left_plus=68	max_min_right=23	max_min_right_minus=0	max_min_right_plus=23	max_pos_hash_score=296	max_right=147	max_right_minus=147	max_right_plus=147	neg_log10_pos_hash_p_value=8.3	new_junction_coverage=0.21	new_junction_read_count=50	polymorphism_frequency=3.846e-01	pos_hash_score=22	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.25	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=80	side_2_redundant=0	total_non_overlap_reads=32
JC	787	.	Xen14_105	4988	-1	Xen14_152	859	1	0	alignment_overlap=0	coverage_minus=30	coverage_plus=19	flanking_left=150	flanking_right=76	frequency=1.786e-01	junction_possible_overlap_registers=148	key=Xen14_105__4988__-1__Xen14_152__859__1__0____150__76__0__1	max_left=148	max_left_minus=148	max_left_plus=148	max_min_left=71	max_min_left_minus=71	max_min_left_plus=71	max_min_right=74	max_min_right_minus=70	max_min_right_plus=74	max_pos_hash_score=296	max_right=76	max_right_minus=76	max_right_plus=74	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.51	new_junction_read_count=60	polymorphism_frequency=1.786e-01	pos_hash_score=35	prediction=polymorphism	reject=FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.84	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=276	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=49
JC	788	.	Xen14_106	87	-1	Xen14_159	728	-1	0	alignment_overlap=1	coverage_minus=7	coverage_plus=5	flanking_left=86	flanking_right=150	frequency=1.605e-01	junction_possible_overlap_registers=147	key=Xen14_106__87__-1__Xen14_159__729__-1__1____86__150__0__0	max_left=67	max_left_minus=67	max_left_plus=60	max_min_left=67	max_min_left_minus=67	max_min_left_plus=60	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=294	max_right=103	max_right_minus=103	max_right_plus=93	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.11	new_junction_read_count=12	polymorphism_frequency=1.605e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.77	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=74	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.43	side_2_overlap=0	side_2_possible_overlap_registers=147	side_2_read_count=52	side_2_redundant=0	total_non_overlap_reads=12
JC	789	.	Xen14_106	1597	1	Xen14_191	130	1	0	alignment_overlap=2	coverage_minus=5	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=1.383e-01	junction_possible_overlap_registers=146	key=Xen14_106__1597__1__Xen14_191__128__1__2____150__150__0__0	max_left=2	max_left_minus=2	max_left_plus=1	max_min_left=2	max_min_left_minus=2	max_min_left_plus=1	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=292	max_right=145	max_right_minus=145	max_right_plus=145	neg_log10_pos_hash_p_value=12.1	new_junction_coverage=0.08	new_junction_read_count=16	polymorphism_frequency=1.383e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.27	side_1_overlap=2	side_1_possible_overlap_registers=148	side_1_read_count=121	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.25	side_2_overlap=0	side_2_possible_overlap_registers=146	side_2_read_count=80	side_2_redundant=0	total_non_overlap_reads=7
JC	790	.	Xen14_106	1601	-1	Xen14_167	666	-1	0	alignment_overlap=0	coverage_minus=38	coverage_plus=36	flanking_left=150	flanking_right=150	frequency=6.205e-01	junction_possible_overlap_registers=148	key=Xen14_106__1601__-1__Xen14_167__666__-1__0____150__150__0__0	max_left=60	max_left_minus=59	max_left_plus=60	max_min_left=60	max_min_left_minus=59	max_min_left_plus=60	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=296	max_right=148	max_right_minus=147	max_right_plus=148	neg_log10_pos_hash_p_value=1.9	new_junction_coverage=0.23	new_junction_read_count=94	polymorphism_frequency=6.205e-01	pos_hash_score=37	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.20	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=115	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=74
JC	791	.	Xen14_106	4570	1	Xen14_47	36192	1	0	alignment_overlap=2	coverage_minus=5	coverage_plus=4	flanking_left=150	flanking_right=83	frequency=2.031e-01	junction_possible_overlap_registers=146	key=Xen14_106__4570__1__Xen14_47__36190__1__2____150__83__0__0	max_left=69	max_left_minus=69	max_left_plus=68	max_min_left=69	max_min_left_minus=69	max_min_left_plus=68	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=292	max_right=83	max_right_minus=83	max_right_plus=83	neg_log10_pos_hash_p_value=10.1	new_junction_coverage=0.18	new_junction_read_count=21	polymorphism_frequency=2.031e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.90	side_1_overlap=2	side_1_possible_overlap_registers=148	side_1_read_count=86	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.59	side_2_overlap=0	side_2_possible_overlap_registers=146	side_2_read_count=80	side_2_redundant=0	total_non_overlap_reads=9
JC	792	.	Xen14_106	4570	1	Xen14_90	73	-1	0	alignment_overlap=1	coverage_minus=13	coverage_plus=3	flanking_left=150	flanking_right=73	frequency=2.121e-01	junction_possible_overlap_registers=147	key=Xen14_106__4570__1__Xen14_90__74__-1__1____150__73__0__1	max_left=86	max_left_minus=85	max_left_plus=86	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=73	max_min_right_minus=73	max_min_right_plus=72	max_pos_hash_score=294	max_right=73	max_right_minus=73	max_right_plus=72	neg_log10_pos_hash_p_value=9.1	new_junction_coverage=0.22	new_junction_read_count=23	polymorphism_frequency=2.121e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.90	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=86	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=16
JC	793	.	Xen14_107	4859	1	Xen14_159	722	1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=5	flanking_left=74	flanking_right=77	frequency=2.105e-01	junction_possible_overlap_registers=148	key=Xen14_107__4859__1__Xen14_159__722__1__0____74__77__1__0	max_left=74	max_left_minus=74	max_left_plus=74	max_min_left=74	max_min_left_minus=74	max_min_left_plus=74	max_min_right=69	max_min_right_minus=0	max_min_right_plus=69	max_pos_hash_score=296	max_right=76	max_right_minus=76	max_right_plus=76	neg_log10_pos_hash_p_value=8.5	new_junction_coverage=0.17	new_junction_read_count=16	polymorphism_frequency=2.105e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.49	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=60	side_2_redundant=0	total_non_overlap_reads=8
JC	794	.	Xen14_107	4859	1	Xen14_85	2720	1	-2	alignment_overlap=-2	coverage_minus=35	coverage_plus=36	flanking_left=74	flanking_right=150	frequency=4.214e-01	junction_possible_overlap_registers=146	key=Xen14_107__4859__1__Xen14_85__2720__1__-2__CC__74__150__1__0	max_left=74	max_left_minus=74	max_left_plus=74	max_min_left=65	max_min_left_minus=65	max_min_left_plus=65	max_min_right=74	max_min_right_minus=74	max_min_right_plus=74	max_pos_hash_score=292	max_right=147	max_right_minus=147	max_right_plus=138	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.76	new_junction_read_count=74	polymorphism_frequency=4.214e-01	pos_hash_score=45	prediction=polymorphism	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.78	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=103	side_2_redundant=0	total_non_overlap_reads=71	unique_read_sequence=CC
JC	795	.	Xen14_108	2632	1	Xen14_144	1085	-1	0	alignment_overlap=6	coverage_minus=15	coverage_plus=19	flanking_left=150	flanking_right=150	frequency=5.072e-01	junction_possible_overlap_registers=142	key=Xen14_108__2632__1__Xen14_144__1091__-1__6____150__150__0__0	max_left=52	max_left_minus=50	max_left_plus=52	max_min_left=52	max_min_left_minus=50	max_min_left_plus=52	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=284	max_right=141	max_right_minus=137	max_right_plus=141	neg_log10_pos_hash_p_value=3.2	new_junction_coverage=0.12	new_junction_read_count=40	polymorphism_frequency=5.072e-01	pos_hash_score=26	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.88	side_1_overlap=6	side_1_possible_overlap_registers=148	side_1_read_count=81	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=142	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=34
JC	796	.	Xen14_109	121	1	Xen14_12	188	-1	-78	alignment_overlap=-78	coverage_minus=3	coverage_plus=5	flanking_left=150	flanking_right=150	frequency=2.404e-01	junction_possible_overlap_registers=70	key=Xen14_109__121__1__Xen14_12__188__-1__-78__TCCCAGACCGAACTGATTGTTGGTCAGTGCGCCTGACAGTCGAAACTTACAGCTCAGTCTGCCACCCCGTGTCAGCAG__150__150__0__0	max_left=61	max_left_minus=9	max_left_plus=61	max_min_left=14	max_min_left_minus=9	max_min_left_plus=14	max_min_right=11	max_min_right_minus=0	max_min_right_plus=11	max_pos_hash_score=140	max_right=69	max_right_minus=69	max_right_plus=68	neg_log10_pos_hash_p_value=4.0	new_junction_coverage=0.28	new_junction_read_count=11	polymorphism_frequency=2.404e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.89	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=77	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.90	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=70	side_2_redundant=0	total_non_overlap_reads=8	unique_read_sequence=TCCCAGACCGAACTGATTGTTGGTCAGTGCGCCTGACAGTCGAAACTTACAGCTCAGTCTGCCACCCCGTGTCAGCAG
JC	797	.	Xen14_110	1	1	Xen14_168	26	1	0	alignment_overlap=25	coverage_minus=9	coverage_plus=8	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=123	key=Xen14_110__1__1__Xen14_168__1__1__25____150__150__0__0	max_left=120	max_left_minus=101	max_left_plus=120	max_min_left=62	max_min_left_minus=62	max_min_left_plus=0	max_min_right=61	max_min_right_minus=61	max_min_right_plus=60	max_pos_hash_score=246	max_right=72	max_right_minus=72	max_right_plus=60	neg_log10_pos_hash_p_value=1.8	new_junction_coverage=0.03	new_junction_read_count=17	polymorphism_frequency=1.000e+00	pos_hash_score=15	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=25	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=123	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=17
JC	798	.	Xen14_111	1741	1	Xen14_111	1785	1	0	alignment_overlap=7	coverage_minus=8	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=1.639e-02	junction_possible_overlap_registers=141	key=Xen14_111__1741__1__Xen14_111__1778__1__7____150__150__0__0	max_left=53	max_left_minus=53	max_left_plus=39	max_min_left=53	max_min_left_minus=53	max_min_left_plus=39	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=282	max_right=123	max_right_minus=123	max_right_plus=104	neg_log10_pos_hash_p_value=28.5	new_junction_coverage=0.01	new_junction_read_count=9	polymorphism_frequency=1.639e-02	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=7	side_1_possible_overlap_registers=148	side_1_read_count=561	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.86	side_2_overlap=0	side_2_possible_overlap_registers=141	side_2_read_count=546	side_2_redundant=0	total_non_overlap_reads=9
JC	799	.	Xen14_113	1	1	Xen14_187	464	-1	-22	alignment_overlap=-22	coverage_minus=76	coverage_plus=110	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=126	key=Xen14_113__1__1__Xen14_187__464__-1__-22__CACCCCAACCCGTCACTACGCA__150__150__0__0	max_left=125	max_left_minus=122	max_left_plus=125	max_min_left=60	max_min_left_minus=57	max_min_left_plus=60	max_min_right=64	max_min_right_minus=64	max_min_right_plus=63	max_pos_hash_score=252	max_right=127	max_right_minus=126	max_right_plus=127	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.10	new_junction_read_count=186	polymorphism_frequency=1.000e+00	pos_hash_score=100	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=186	unique_read_sequence=CACCCCAACCCGTCACTACGCA
JC	800	.	Xen14_113	4275	-1	Xen14_123	2714	-1	-44	alignment_overlap=-44	coverage_minus=3	coverage_plus=7	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=104	key=Xen14_113__4275__-1__Xen14_123__2714__-1__-44__TACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGA__150__150__0__0	max_left=74	max_left_minus=74	max_left_plus=74	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=53	max_min_right_minus=53	max_min_right_plus=44	max_pos_hash_score=208	max_right=53	max_right_minus=53	max_right_plus=44	neg_log10_pos_hash_p_value=10.6	new_junction_coverage=0.04	new_junction_read_count=14	polymorphism_frequency=1.000e+00	pos_hash_score=8	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=10	unique_read_sequence=TACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGA
JC	801	.	Xen14_113	4275	-1	Xen14_123	2714	-1	-44	alignment_overlap=-44	coverage_minus=26	coverage_plus=13	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=104	key=Xen14_113__4275__-1__Xen14_123__2714__-1__-44__TACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGG__150__150__0__0	max_left=102	max_left_minus=96	max_left_plus=102	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=44	max_min_right_minus=44	max_min_right_plus=35	max_pos_hash_score=208	max_right=44	max_right_minus=44	max_right_plus=35	neg_log10_pos_hash_p_value=5.0	new_junction_coverage=0.12	new_junction_read_count=47	polymorphism_frequency=1.000e+00	pos_hash_score=23	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=39	unique_read_sequence=TACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGG
JC	802	.	Xen14_113	4275	-1	Xen14_3	166191	1	0	alignment_overlap=38	coverage_minus=32	coverage_plus=37	flanking_left=150	flanking_right=121	frequency=6.235e-01	junction_possible_overlap_registers=110	key=Xen14_113__4275__-1__Xen14_3__166153__1__38____150__121__0__0	max_left=111	max_left_minus=111	max_left_plus=105	max_min_left=52	max_min_left_minus=52	max_min_left_plus=49	max_min_right=55	max_min_right_minus=54	max_min_right_plus=55	max_pos_hash_score=220	max_right=88	max_right_minus=88	max_right_plus=79	neg_log10_pos_hash_p_value=1.0	new_junction_coverage=0.72	new_junction_read_count=77	polymorphism_frequency=6.235e-01	pos_hash_score=46	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=38	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=110	side_2_read_count=93	side_2_redundant=0	total_non_overlap_reads=69
JC	803	.	Xen14_115	77	-1	Xen14_43	39557	-1	0	alignment_overlap=0	coverage_minus=27	coverage_plus=11	flanking_left=77	flanking_right=150	frequency=3.697e-01	junction_possible_overlap_registers=148	key=Xen14_115__77__-1__Xen14_43__39557__-1__0____77__150__1__0	max_left=74	max_left_minus=74	max_left_plus=66	max_min_left=74	max_min_left_minus=74	max_min_left_plus=66	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=296	max_right=132	max_right_minus=132	max_right_plus=119	neg_log10_pos_hash_p_value=3.2	new_junction_coverage=0.42	new_junction_read_count=44	polymorphism_frequency=3.697e-01	pos_hash_score=23	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.86	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=75	side_2_redundant=0	total_non_overlap_reads=38
JC	804	.	Xen14_115	77	-1	Xen14_96	3984	-1	0	alignment_overlap=0	coverage_minus=8	coverage_plus=7	flanking_left=77	flanking_right=150	frequency=1.402e-01	junction_possible_overlap_registers=148	key=Xen14_115__77__-1__Xen14_96__3984__-1__0____77__150__1__0	max_left=40	max_left_minus=40	max_left_plus=36	max_min_left=40	max_min_left_minus=40	max_min_left_plus=36	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=296	max_right=149	max_right_minus=125	max_right_plus=149	neg_log10_pos_hash_p_value=7.6	new_junction_coverage=0.12	new_junction_read_count=15	polymorphism_frequency=1.402e-01	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.76	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=92	side_2_redundant=0	total_non_overlap_reads=15
JC	805	.	Xen14_115	78	-1	Xen14_14	89033	1	0	alignment_overlap=1	coverage_minus=2	coverage_plus=3	flanking_left=77	flanking_right=112	frequency=5.835e-02	junction_possible_overlap_registers=147	key=Xen14_115__78__-1__Xen14_14__89032__1__1____77__112__0__0	max_left=77	max_left_minus=77	max_left_plus=75	max_min_left=72	max_min_left_minus=0	max_min_left_plus=72	max_min_right=75	max_min_right_minus=75	max_min_right_plus=74	max_pos_hash_score=294	max_right=77	max_right_minus=75	max_right_plus=77	neg_log10_pos_hash_p_value=14.0	new_junction_coverage=0.04	new_junction_read_count=6	polymorphism_frequency=5.835e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.43	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=53	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.87	side_2_overlap=0	side_2_possible_overlap_registers=147	side_2_read_count=141	side_2_redundant=0	total_non_overlap_reads=5
JC	806	.	Xen14_117	77	-1	Xen14_7	136257	1	0	alignment_overlap=2	coverage_minus=18	coverage_plus=14	flanking_left=75	flanking_right=150	frequency=3.920e-01	junction_possible_overlap_registers=146	key=Xen14_117__77__-1__Xen14_7__136255__1__2____75__150__0__0	max_left=71	max_left_minus=71	max_left_plus=66	max_min_left=71	max_min_left_minus=71	max_min_left_plus=66	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=292	max_right=147	max_right_minus=147	max_right_plus=140	neg_log10_pos_hash_p_value=2.0	new_junction_coverage=0.51	new_junction_read_count=36	polymorphism_frequency=3.920e-01	pos_hash_score=25	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.34	side_1_overlap=2	side_1_possible_overlap_registers=148	side_1_read_count=25	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.24	side_2_overlap=0	side_2_possible_overlap_registers=146	side_2_read_count=87	side_2_redundant=0	total_non_overlap_reads=32
JC	807	.	Xen14_118	1	1	Xen14_184	442	-1	0	alignment_overlap=31	coverage_minus=6	coverage_plus=13	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=117	key=Xen14_118__1__1__Xen14_184__473__-1__31____150__150__0__0	max_left=112	max_left_minus=87	max_left_plus=112	max_min_left=53	max_min_left_minus=0	max_min_left_plus=53	max_min_right=55	max_min_right_minus=55	max_min_right_plus=51	max_pos_hash_score=234	max_right=70	max_right_minus=55	max_right_plus=70	neg_log10_pos_hash_p_value=1.8	new_junction_coverage=0.05	new_junction_read_count=19	polymorphism_frequency=1.000e+00	pos_hash_score=15	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=31	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=117	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=19
JC	808	.	Xen14_118	3283	1	Xen14_43	39549	1	0	alignment_overlap=0	coverage_minus=18	coverage_plus=16	flanking_left=73	flanking_right=150	frequency=3.302e-01	junction_possible_overlap_registers=148	key=Xen14_118__3283__1__Xen14_43__39549__1__0____73__150__1__0	max_left=73	max_left_minus=73	max_left_plus=73	max_min_left=73	max_min_left_minus=73	max_min_left_plus=73	max_min_right=73	max_min_right_minus=0	max_min_right_plus=73	max_pos_hash_score=296	max_right=145	max_right_minus=141	max_right_plus=145	neg_log10_pos_hash_p_value=1.2	new_junction_coverage=0.48	new_junction_read_count=35	polymorphism_frequency=3.302e-01	pos_hash_score=25	prediction=polymorphism	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=71	side_2_redundant=0	total_non_overlap_reads=34
JC	809	.	Xen14_118	3283	1	Xen14_96	5676	-1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=4	flanking_left=73	flanking_right=150	frequency=9.091e-02	junction_possible_overlap_registers=148	key=Xen14_118__3283__1__Xen14_96__5676__-1__0____73__150__1__0	max_left=65	max_left_minus=12	max_left_plus=65	max_min_left=23	max_min_left_minus=12	max_min_left_plus=23	max_min_right=35	max_min_right_minus=0	max_min_right_plus=35	max_pos_hash_score=296	max_right=136	max_right_minus=136	max_right_plus=133	neg_log10_pos_hash_p_value=5.8	new_junction_coverage=0.08	new_junction_read_count=7	polymorphism_frequency=9.091e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.58	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=70	side_2_redundant=0	total_non_overlap_reads=6
JC	810	.	Xen14_118	3284	1	Xen14_96	3975	1	0	alignment_overlap=1	coverage_minus=10	coverage_plus=11	flanking_left=72	flanking_right=150	frequency=2.011e-01	junction_possible_overlap_registers=147	key=Xen14_118__3283__1__Xen14_96__3975__1__1____72__150__1__0	max_left=70	max_left_minus=70	max_left_plus=68	max_min_left=70	max_min_left_minus=70	max_min_left_plus=68	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=294	max_right=135	max_right_minus=129	max_right_plus=135	neg_log10_pos_hash_p_value=3.1	new_junction_coverage=0.27	new_junction_read_count=24	polymorphism_frequency=2.011e-01	pos_hash_score=13	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.80	side_2_overlap=1	side_2_possible_overlap_registers=148	side_2_read_count=96	side_2_redundant=0	total_non_overlap_reads=21
JC	811	.	Xen14_119	73	-1	Xen14_134	121	-1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=8	flanking_left=73	flanking_right=120	frequency=1.509e-01	junction_possible_overlap_registers=147	key=Xen14_119__74__-1__Xen14_134__121__-1__1____73__120__1__0	max_left=65	max_left_minus=40	max_left_plus=65	max_min_left=65	max_min_left_minus=40	max_min_left_plus=65	max_min_right=34	max_min_right_minus=0	max_min_right_plus=34	max_pos_hash_score=294	max_right=115	max_right_minus=109	max_right_plus=115	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.10	new_junction_read_count=9	polymorphism_frequency=1.509e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.49	side_2_overlap=1	side_2_possible_overlap_registers=148	side_2_read_count=51	side_2_redundant=0	total_non_overlap_reads=9
JC	812	.	Xen14_119	73	-1	Xen14_168	629	-1	-15	alignment_overlap=-15	coverage_minus=22	coverage_plus=16	flanking_left=73	flanking_right=150	frequency=1	junction_possible_overlap_registers=133	key=Xen14_119__73__-1__Xen14_168__629__-1__-15__AGCTAGGCTGGGGGG__73__150__1__0	max_left=72	max_left_minus=62	max_left_plus=72	max_min_left=64	max_min_left_minus=62	max_min_left_plus=64	max_min_right=66	max_min_right_minus=0	max_min_right_plus=66	max_pos_hash_score=266	max_right=132	max_right_minus=132	max_right_plus=132	neg_log10_pos_hash_p_value=3.1	new_junction_coverage=0.06	new_junction_read_count=40	polymorphism_frequency=1.000e+00	pos_hash_score=21	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=38	unique_read_sequence=AGCTAGGCTGGGGGG
JC	813	.	Xen14_119	73	-1	Xen14_25	77	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=3	flanking_left=73	flanking_right=77	frequency=NA	junction_possible_overlap_registers=148	key=Xen14_119__73__-1__Xen14_25__77__-1__0____73__77__1__1	max_left=73	max_left_minus=65	max_left_plus=73	max_min_left=73	max_min_left_minus=65	max_min_left_plus=73	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=296	max_right=77	max_right_minus=77	max_right_plus=76	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.25	new_junction_read_count=18	polymorphism_frequency=NA	pos_hash_score=4	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=4
JC	814	.	Xen14_119	3208	-1	Xen14_168	26	1	0	alignment_overlap=25	coverage_minus=18	coverage_plus=26	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=123	key=Xen14_119__3208__-1__Xen14_168__1__1__25____150__150__0__0	max_left=121	max_left_minus=121	max_left_plus=115	max_min_left=62	max_min_left_minus=56	max_min_left_plus=62	max_min_right=59	max_min_right_minus=59	max_min_right_plus=55	max_pos_hash_score=246	max_right=74	max_right_minus=74	max_right_plus=74	neg_log10_pos_hash_p_value=1.6	new_junction_coverage=0.07	new_junction_read_count=44	polymorphism_frequency=1.000e+00	pos_hash_score=28	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=25	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=123	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=44
JC	815	.	Xen14_12	25	1	Xen14_166	677	-1	0	alignment_overlap=8	coverage_minus=17	coverage_plus=26	flanking_left=150	flanking_right=150	frequency=8.403e-02	junction_possible_overlap_registers=140	key=Xen14_12__25__1__Xen14_166__685__-1__8____150__150__0__0	max_left=139	max_left_minus=139	max_left_plus=132	max_min_left=63	max_min_left_minus=62	max_min_left_plus=63	max_min_right=65	max_min_right_minus=65	max_min_right_plus=61	max_pos_hash_score=280	max_right=137	max_right_minus=134	max_right_plus=137	neg_log10_pos_hash_p_value=1.5	new_junction_coverage=0.04	new_junction_read_count=43	polymorphism_frequency=8.403e-02	pos_hash_score=29	prediction=polymorphism	reject=FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=12.74	side_1_overlap=8	side_1_possible_overlap_registers=148	side_1_read_count=991	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=140	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=43
JC	816	.	Xen14_12	188	-1	Xen14_29	60	1	0	alignment_overlap=59	coverage_minus=21	coverage_plus=21	flanking_left=129	flanking_right=150	frequency=6.861e-01	junction_possible_overlap_registers=89	key=Xen14_12__188__-1__Xen14_29__1__1__59____129__150__0__0	max_left=90	max_left_minus=90	max_left_plus=88	max_min_left=45	max_min_left_minus=16	max_min_left_plus=45	max_min_right=35	max_min_right_minus=18	max_min_right_plus=35	max_pos_hash_score=178	max_right=88	max_right_minus=88	max_right_plus=77	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.16	new_junction_read_count=46	polymorphism_frequency=6.861e-01	pos_hash_score=25	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.90	side_1_overlap=59	side_1_possible_overlap_registers=148	side_1_read_count=70	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=89	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=42
JC	817	.	Xen14_12	188	-1	Xen14_68	16331	1	0	alignment_overlap=0	coverage_minus=23	coverage_plus=15	flanking_left=150	flanking_right=52	frequency=4.017e-01	junction_possible_overlap_registers=148	key=Xen14_12__188__-1__Xen14_68__16331__1__0____150__52__0__1	max_left=149	max_left_minus=145	max_left_plus=149	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=52	max_min_right_minus=52	max_min_right_plus=42	max_pos_hash_score=296	max_right=52	max_right_minus=52	max_right_plus=42	neg_log10_pos_hash_p_value=2.6	new_junction_coverage=0.39	new_junction_read_count=47	polymorphism_frequency=4.017e-01	pos_hash_score=23	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.90	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=70	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=38
JC	818	.	Xen14_12	189	-1	Xen14_21	59	-1	0	alignment_overlap=1	coverage_minus=37	coverage_plus=31	flanking_left=150	flanking_right=59	frequency=5.879e-01	junction_possible_overlap_registers=147	key=Xen14_12__189__-1__Xen14_21__60__-1__1____150__59__0__1	max_left=147	max_left_minus=147	max_left_plus=139	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=59	max_min_right_minus=59	max_min_right_plus=58	max_pos_hash_score=294	max_right=59	max_right_minus=59	max_right_plus=58	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=1.24	new_junction_read_count=85	polymorphism_frequency=5.879e-01	pos_hash_score=39	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.77	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=60	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=68
JC	819	.	Xen14_121	1	1	Xen14_184	443	-1	0	alignment_overlap=30	coverage_minus=15	coverage_plus=32	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=118	key=Xen14_121__1__1__Xen14_184__473__-1__30____150__150__0__0	max_left=119	max_left_minus=118	max_left_plus=119	max_min_left=58	max_min_left_minus=56	max_min_left_plus=58	max_min_right=58	max_min_right_minus=51	max_min_right_plus=58	max_pos_hash_score=236	max_right=74	max_right_minus=74	max_right_plus=73	neg_log10_pos_hash_p_value=1.4	new_junction_coverage=0.12	new_junction_read_count=51	polymorphism_frequency=1.000e+00	pos_hash_score=28	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=30	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=118	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=47
JC	820	.	Xen14_123	1	1	Xen14_205	404	-1	-34	alignment_overlap=-34	coverage_minus=98	coverage_plus=69	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=114	key=Xen14_123__1__1__Xen14_205__404__-1__-34__ACGCCTTTCCAGACGCTTCCACTAACACACACAC__150__150__0__0	max_left=115	max_left_minus=115	max_left_plus=110	max_min_left=57	max_min_left_minus=57	max_min_left_plus=56	max_min_right=57	max_min_right_minus=57	max_min_right_plus=57	max_pos_hash_score=228	max_right=115	max_right_minus=115	max_right_plus=110	neg_log10_pos_hash_p_value=16.5	new_junction_coverage=0.25	new_junction_read_count=170	polymorphism_frequency=1.000e+00	pos_hash_score=90	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=167	unique_read_sequence=ACGCCTTTCCAGACGCTTCCACTAACACACACAC
JC	821	.	Xen14_123	1	1	Xen14_205	404	-1	-34	alignment_overlap=-34	coverage_minus=286	coverage_plus=260	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=114	key=Xen14_123__1__1__Xen14_205__404__-1__-34__GCGCCTTTCCAGACGCTTCCACTAACACACACAT__150__150__0__0	max_left=115	max_left_minus=115	max_left_plus=114	max_min_left=57	max_min_left_minus=56	max_min_left_plus=57	max_min_right=58	max_min_right_minus=58	max_min_right_plus=58	max_pos_hash_score=228	max_right=115	max_right_minus=114	max_right_plus=115	neg_log10_pos_hash_p_value=1.3	new_junction_coverage=0.82	new_junction_read_count=548	polymorphism_frequency=1.000e+00	pos_hash_score=161	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=546	unique_read_sequence=GCGCCTTTCCAGACGCTTCCACTAACACACACAT
JC	822	.	Xen14_123	2714	-1	Xen14_17	1	1	-19	alignment_overlap=-19	coverage_minus=28	coverage_plus=18	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=129	key=Xen14_123__2714__-1__Xen14_17__1__1__-19__TCCCATGCCGAACTCAGAA__150__150__0__0	max_left=51	max_left_minus=51	max_left_plus=47	max_min_left=51	max_min_left_minus=51	max_min_left_plus=47	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=258	max_right=130	max_right_minus=130	max_right_plus=129	neg_log10_pos_hash_p_value=6.5	new_junction_coverage=0.10	new_junction_read_count=48	polymorphism_frequency=1.000e+00	pos_hash_score=25	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=46	unique_read_sequence=TCCCATGCCGAACTCAGAA
JC	823	.	Xen14_123	2714	-1	Xen14_4	1	1	-5	alignment_overlap=-5	coverage_minus=5	coverage_plus=17	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=143	key=Xen14_123__2714__-1__Xen14_4__1__1__-5__CCCCA__150__150__0__0	max_left=44	max_left_minus=35	max_left_plus=44	max_min_left=44	max_min_left_minus=35	max_min_left_plus=44	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=286	max_right=114	max_right_minus=113	max_right_plus=114	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.06	new_junction_read_count=30	polymorphism_frequency=1.000e+00	pos_hash_score=11	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=22	unique_read_sequence=CCCCA
JC	824	.	Xen14_123	2714	-1	Xen14_4	1	1	-5	alignment_overlap=-5	coverage_minus=12	coverage_plus=8	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=143	key=Xen14_123__2714__-1__Xen14_4__1__1__-5__TCCCA__150__150__0__0	max_left=53	max_left_minus=44	max_left_plus=53	max_min_left=53	max_min_left_minus=44	max_min_left_plus=53	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=286	max_right=136	max_right_minus=136	max_right_plus=135	neg_log10_pos_hash_p_value=5.0	new_junction_coverage=0.05	new_junction_read_count=24	polymorphism_frequency=1.000e+00	pos_hash_score=17	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=20	unique_read_sequence=TCCCA
JC	825	.	Xen14_123	2714	-1	Xen14_9	1	1	-15	alignment_overlap=-15	coverage_minus=70	coverage_plus=69	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=133	key=Xen14_123__2714__-1__Xen14_9__1__1__-15__CCCCATGCCGAACTC__150__150__0__0	max_left=130	max_left_minus=128	max_left_plus=130	max_min_left=67	max_min_left_minus=66	max_min_left_plus=67	max_min_right=57	max_min_right_minus=57	max_min_right_plus=55	max_pos_hash_score=266	max_right=130	max_right_minus=130	max_right_plus=129	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.28	new_junction_read_count=140	polymorphism_frequency=1.000e+00	pos_hash_score=84	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=139	unique_read_sequence=CCCCATGCCGAACTC
JC	826	.	Xen14_124	1	1	Xen14_165	691	-1	-1	alignment_overlap=-1	coverage_minus=57	coverage_plus=36	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=147	key=Xen14_124__1__1__Xen14_165__691__-1__-1__A__150__150__0__0	max_left=146	max_left_minus=146	max_left_plus=144	max_min_left=71	max_min_left_minus=71	max_min_left_plus=71	max_min_right=71	max_min_right_minus=71	max_min_right_plus=71	max_pos_hash_score=294	max_right=146	max_right_minus=146	max_right_plus=144	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.68	new_junction_read_count=93	polymorphism_frequency=1.000e+00	pos_hash_score=62	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=93	unique_read_sequence=A
JC	827	.	Xen14_124	1	1	Xen14_165	691	-1	-1	alignment_overlap=-1	coverage_minus=64	coverage_plus=37	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=147	key=Xen14_124__1__1__Xen14_165__691__-1__-1__G__150__150__0__0	max_left=146	max_left_minus=142	max_left_plus=146	max_min_left=74	max_min_left_minus=74	max_min_left_plus=70	max_min_right=74	max_min_right_minus=74	max_min_right_plus=72	max_pos_hash_score=294	max_right=145	max_right_minus=142	max_right_plus=145	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.74	new_junction_read_count=101	polymorphism_frequency=1.000e+00	pos_hash_score=68	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=101	unique_read_sequence=G
JC	828	.	Xen14_124	2576	-1	Xen14_21	74761	1	-28	alignment_overlap=-28	coverage_minus=35	coverage_plus=18	flanking_left=150	flanking_right=77	frequency=1	junction_possible_overlap_registers=120	key=Xen14_124__2576__-1__Xen14_21__74761__1__-28__CCTTCGGTTTTCATCAGTCCTGATAACA__150__77__0__1	max_left=121	max_left_minus=121	max_left_plus=119	max_min_left=58	max_min_left_minus=50	max_min_left_plus=58	max_min_right=57	max_min_right_minus=57	max_min_right_plus=57	max_pos_hash_score=240	max_right=77	max_right_minus=72	max_right_plus=77	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.79	new_junction_read_count=59	polymorphism_frequency=1.000e+00	pos_hash_score=30	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=53	unique_read_sequence=CCTTCGGTTTTCATCAGTCCTGATAACA
JC	829	.	Xen14_125	2302	-1	Xen14_165	5	1	0	alignment_overlap=4	coverage_minus=3	coverage_plus=5	flanking_left=150	flanking_right=150	frequency=1.489e-01	junction_possible_overlap_registers=144	key=Xen14_125__2302__-1__Xen14_165__1__1__4____150__150__0__0	max_left=138	max_left_minus=107	max_left_plus=138	max_min_left=48	max_min_left_minus=7	max_min_left_plus=48	max_min_right=39	max_min_right_minus=39	max_min_right_plus=8	max_pos_hash_score=288	max_right=143	max_right_minus=141	max_right_plus=143	neg_log10_pos_hash_p_value=10.4	new_junction_coverage=0.06	new_junction_read_count=8	polymorphism_frequency=1.489e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.74	side_1_overlap=4	side_1_possible_overlap_registers=148	side_1_read_count=94	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=144	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=8
JC	830	.	Xen14_125	2302	-1	Xen14_165	23	1	0	alignment_overlap=13	coverage_minus=2	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=6.742e-02	junction_possible_overlap_registers=135	key=Xen14_125__2302__-1__Xen14_165__10__1__13____150__150__0__0	max_left=129	max_left_minus=51	max_left_plus=129	max_min_left=51	max_min_left_minus=51	max_min_left_plus=13	max_min_right=8	max_min_right_minus=0	max_min_right_plus=8	max_pos_hash_score=270	max_right=124	max_right_minus=86	max_right_plus=124	neg_log10_pos_hash_p_value=13.0	new_junction_coverage=0.03	new_junction_read_count=4	polymorphism_frequency=6.742e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.75	side_1_overlap=13	side_1_possible_overlap_registers=148	side_1_read_count=95	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.18	side_2_overlap=0	side_2_possible_overlap_registers=135	side_2_read_count=24	side_2_redundant=0	total_non_overlap_reads=4
JC	831	.	Xen14_125	2356	-1	Xen14_165	5	1	0	alignment_overlap=4	coverage_minus=4	coverage_plus=3	flanking_left=150	flanking_right=150	frequency=1.095e-01	junction_possible_overlap_registers=144	key=Xen14_125__2356__-1__Xen14_165__1__1__4____150__150__0__0	max_left=142	max_left_minus=142	max_left_plus=5	max_min_left=56	max_min_left_minus=56	max_min_left_plus=5	max_min_right=4	max_min_right_minus=4	max_min_right_plus=0	max_pos_hash_score=288	max_right=143	max_right_minus=141	max_right_plus=143	neg_log10_pos_hash_p_value=10.9	new_junction_coverage=0.05	new_junction_read_count=7	polymorphism_frequency=1.095e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.92	side_1_overlap=4	side_1_possible_overlap_registers=148	side_1_read_count=117	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=144	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=7
JC	832	.	Xen14_125	2374	-1	Xen14_165	5	1	0	alignment_overlap=4	coverage_minus=4	coverage_plus=4	flanking_left=150	flanking_right=150	frequency=1.321e-01	junction_possible_overlap_registers=144	key=Xen14_125__2374__-1__Xen14_165__1__1__4____150__150__0__0	max_left=138	max_left_minus=42	max_left_plus=138	max_min_left=42	max_min_left_minus=42	max_min_left_plus=5	max_min_right=8	max_min_right_minus=0	max_min_right_plus=8	max_pos_hash_score=288	max_right=143	max_right_minus=141	max_right_plus=143	neg_log10_pos_hash_p_value=10.9	new_junction_coverage=0.06	new_junction_read_count=8	polymorphism_frequency=1.321e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.85	side_1_overlap=4	side_1_possible_overlap_registers=148	side_1_read_count=108	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=144	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=8
JC	833	.	Xen14_125	2392	-1	Xen14_165	5	1	0	alignment_overlap=4	coverage_minus=5	coverage_plus=4	flanking_left=150	flanking_right=150	frequency=1.451e-01	junction_possible_overlap_registers=144	key=Xen14_125__2392__-1__Xen14_165__1__1__4____150__150__0__0	max_left=137	max_left_minus=60	max_left_plus=137	max_min_left=60	max_min_left_minus=60	max_min_left_plus=5	max_min_right=9	max_min_right_minus=0	max_min_right_plus=9	max_pos_hash_score=288	max_right=143	max_right_minus=141	max_right_plus=143	neg_log10_pos_hash_p_value=10.4	new_junction_coverage=0.07	new_junction_read_count=9	polymorphism_frequency=1.451e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.86	side_1_overlap=4	side_1_possible_overlap_registers=148	side_1_read_count=109	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=144	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=9
JC	834	.	Xen14_125	2423	-1	Xen14_165	18	1	0	alignment_overlap=17	coverage_minus=5	coverage_plus=3	flanking_left=150	flanking_right=150	frequency=1.599e-01	junction_possible_overlap_registers=131	key=Xen14_125__2423__-1__Xen14_165__1__1__17____150__150__0__0	max_left=60	max_left_minus=60	max_left_plus=5	max_min_left=60	max_min_left_minus=60	max_min_left_plus=5	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=262	max_right=130	max_right_minus=128	max_right_plus=130	neg_log10_pos_hash_p_value=10.2	new_junction_coverage=0.07	new_junction_read_count=8	polymorphism_frequency=1.599e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.75	side_1_overlap=17	side_1_possible_overlap_registers=148	side_1_read_count=95	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=131	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=8
JC	835	.	Xen14_125	2458	-1	Xen14_165	35	1	0	alignment_overlap=34	coverage_minus=8	coverage_plus=6	flanking_left=150	flanking_right=150	frequency=3.575e-01	junction_possible_overlap_registers=114	key=Xen14_125__2458__-1__Xen14_165__1__1__34____150__150__0__0	max_left=60	max_left_minus=60	max_left_plus=27	max_min_left=56	max_min_left_minus=56	max_min_left_plus=27	max_min_right=56	max_min_right_minus=56	max_min_right_plus=0	max_pos_hash_score=228	max_right=111	max_right_minus=111	max_right_plus=95	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.14	new_junction_read_count=15	polymorphism_frequency=3.575e-01	pos_hash_score=11	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.55	side_1_overlap=34	side_1_possible_overlap_registers=148	side_1_read_count=70	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=114	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=14
JC	836	.	Xen14_125	2476	-1	Xen14_165	1	1	-2	alignment_overlap=-2	coverage_minus=15	coverage_plus=15	flanking_left=150	flanking_right=150	frequency=5.231e-01	junction_possible_overlap_registers=146	key=Xen14_125__2476__-1__Xen14_165__1__1__-2__CA__150__150__0__0	max_left=43	max_left_minus=40	max_left_plus=43	max_min_left=43	max_min_left_minus=40	max_min_left_plus=43	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=292	max_right=147	max_right_minus=145	max_right_plus=147	neg_log10_pos_hash_p_value=5.6	new_junction_coverage=0.24	new_junction_read_count=33	polymorphism_frequency=5.231e-01	pos_hash_score=22	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.48	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=61	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=30	unique_read_sequence=CA
JC	837	.	Xen14_125	2476	-1	Xen14_165	1	1	-2	alignment_overlap=-2	coverage_minus=10	coverage_plus=6	flanking_left=150	flanking_right=150	frequency=4.908e-01	junction_possible_overlap_registers=146	key=Xen14_125__2476__-1__Xen14_165__1__1__-2__CG__150__150__0__0	max_left=42	max_left_minus=42	max_left_plus=29	max_min_left=42	max_min_left_minus=42	max_min_left_plus=29	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=292	max_right=145	max_right_minus=145	max_right_plus=129	neg_log10_pos_hash_p_value=8.7	new_junction_coverage=0.21	new_junction_read_count=29	polymorphism_frequency=4.908e-01	pos_hash_score=12	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.48	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=61	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=16	unique_read_sequence=CG
JC	838	.	Xen14_125	2476	-1	Xen14_165	17	1	0	alignment_overlap=16	coverage_minus=12	coverage_plus=13	flanking_left=150	flanking_right=150	frequency=4.789e-01	junction_possible_overlap_registers=132	key=Xen14_125__2476__-1__Xen14_165__1__1__16____150__150__0__0	max_left=36	max_left_minus=36	max_left_plus=29	max_min_left=36	max_min_left_minus=36	max_min_left_plus=29	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=264	max_right=131	max_right_minus=129	max_right_plus=131	neg_log10_pos_hash_p_value=5.9	new_junction_coverage=0.20	new_junction_read_count=25	polymorphism_frequency=4.789e-01	pos_hash_score=18	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.48	side_1_overlap=16	side_1_possible_overlap_registers=148	side_1_read_count=61	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=132	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=25
JC	839	.	Xen14_126	1701	1	Xen14_85	2720	1	-1	alignment_overlap=-1	coverage_minus=3	coverage_plus=10	flanking_left=150	flanking_right=150	frequency=1.021e-01	junction_possible_overlap_registers=147	key=Xen14_126__1701__1__Xen14_85__2720__1__-1__C__150__150__0__0	max_left=121	max_left_minus=112	max_left_plus=121	max_min_left=13	max_min_left_minus=0	max_min_left_plus=13	max_min_right=45	max_min_right_minus=43	max_min_right_plus=45	max_pos_hash_score=294	max_right=133	max_right_minus=43	max_right_plus=133	neg_log10_pos_hash_p_value=10.6	new_junction_coverage=0.07	new_junction_read_count=14	polymorphism_frequency=1.021e-01	pos_hash_score=13	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.57	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=145	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.78	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=103	side_2_redundant=0	total_non_overlap_reads=13	unique_read_sequence=C
JC	840	.	Xen14_126	1702	1	Xen14_159	722	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=3	flanking_left=150	flanking_right=77	frequency=4.000e-02	junction_possible_overlap_registers=148	key=Xen14_126__1702__1__Xen14_159__722__1__0____150__77__0__1	max_left=122	max_left_minus=113	max_left_plus=122	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=57	max_min_right_minus=37	max_min_right_plus=57	max_pos_hash_score=296	max_right=57	max_right_minus=37	max_right_plus=57	neg_log10_pos_hash_p_value=8.0	new_junction_coverage=0.03	new_junction_read_count=6	polymorphism_frequency=4.000e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.57	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=144	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=4
JC	841	.	Xen14_126	1702	1	Xen14_75	13021	-1	0	alignment_overlap=0	coverage_minus=20	coverage_plus=25	flanking_left=150	flanking_right=150	frequency=3.782e-01	junction_possible_overlap_registers=148	key=Xen14_126__1702__1__Xen14_75__13021__-1__0____150__150__0__0	max_left=149	max_left_minus=147	max_left_plus=149	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=45	max_min_right_minus=44	max_min_right_plus=45	max_pos_hash_score=296	max_right=45	max_right_minus=44	max_right_plus=45	neg_log10_pos_hash_p_value=2.8	new_junction_coverage=0.30	new_junction_read_count=52	polymorphism_frequency=3.782e-01	pos_hash_score=29	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.57	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=144	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.29	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=27	side_2_redundant=0	total_non_overlap_reads=45
JC	842	.	Xen14_126	2082	-1	Xen14_206	403	-1	-47	alignment_overlap=-47	coverage_minus=234	coverage_plus=322	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=101	key=Xen14_126__2082__-1__Xen14_206__403__-1__-47__TTCCACTCAGACCAGAGTCAGTGCCAGTTCCTGCAAGGTGGAATTCC__150__150__0__0	max_left=102	max_left_minus=102	max_left_plus=102	max_min_left=51	max_min_left_minus=51	max_min_left_plus=51	max_min_right=51	max_min_right_minus=51	max_min_right_plus=50	max_pos_hash_score=202	max_right=102	max_right_minus=102	max_right_plus=102	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.75	new_junction_read_count=711	polymorphism_frequency=9.140e-01	pos_hash_score=125	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=196	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=556	unique_read_sequence=TTCCACTCAGACCAGAGTCAGTGCCAGTTCCTGCAAGGTGGAATTCC
JC	843	.	Xen14_126	2200	-1	Xen14_180	75	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=4	flanking_left=150	flanking_right=75	frequency=3.974e-02	junction_possible_overlap_registers=148	key=Xen14_126__2200__-1__Xen14_180__75__-1__0____150__75__0__1	max_left=108	max_left_minus=106	max_left_plus=108	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=44	max_min_right_minus=44	max_min_right_plus=44	max_pos_hash_score=296	max_right=44	max_right_minus=44	max_right_plus=44	neg_log10_pos_hash_p_value=4.3	new_junction_coverage=0.04	new_junction_read_count=6	polymorphism_frequency=3.974e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.57	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=145	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=5
JC	844	.	Xen14_126	2200	-1	Xen14_38	48182	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=4	flanking_left=150	flanking_right=150	frequency=4.615e-02	junction_possible_overlap_registers=148	key=Xen14_126__2200__-1__Xen14_38__48182__1__0____150__150__0__0	max_left=108	max_left_minus=106	max_left_plus=108	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=44	max_min_right_minus=44	max_min_right_plus=44	max_pos_hash_score=296	max_right=44	max_right_minus=44	max_right_plus=44	neg_log10_pos_hash_p_value=10.9	new_junction_coverage=0.03	new_junction_read_count=6	polymorphism_frequency=4.615e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.57	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=145	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=103	side_2_redundant=0	total_non_overlap_reads=5
JC	845	.	Xen14_126	2440	1	Xen14_86	3476	1	0	alignment_overlap=0	coverage_minus=7	coverage_plus=11	flanking_left=76	flanking_right=150	frequency=1.852e-01	junction_possible_overlap_registers=148	key=Xen14_126__2440__1__Xen14_86__3476__1__0____76__150__1__0	max_left=68	max_left_minus=68	max_left_plus=67	max_min_left=68	max_min_left_minus=68	max_min_left_plus=67	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=296	max_right=146	max_right_minus=124	max_right_plus=146	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.12	new_junction_read_count=20	polymorphism_frequency=1.852e-01	pos_hash_score=15	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.96	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=88	side_2_redundant=0	total_non_overlap_reads=18
JC	846	.	Xen14_127	45	1	Xen14_127	84	1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=5.776e-03	junction_possible_overlap_registers=148	key=Xen14_127__45__1__Xen14_127__84__1__0____150__150__0__0	max_left=51	max_left_minus=38	max_left_plus=51	max_min_left=51	max_min_left_minus=38	max_min_left_plus=51	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=296	max_right=141	max_right_minus=112	max_right_plus=141	neg_log10_pos_hash_p_value=55.1	new_junction_coverage=0.00	new_junction_read_count=4	polymorphism_frequency=5.776e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.52	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=537	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.82	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=840	side_2_redundant=0	total_non_overlap_reads=4
JC	847	.	Xen14_127	212	1	Xen14_127	413	1	0	alignment_overlap=17	coverage_minus=1	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=3.622e-03	junction_possible_overlap_registers=131	key=Xen14_127__212__1__Xen14_127__396__1__17____150__150__0__0	max_left=101	max_left_minus=101	max_left_plus=66	max_min_left=66	max_min_left_minus=0	max_min_left_plus=66	max_min_right=32	max_min_right_minus=32	max_min_right_plus=0	max_pos_hash_score=262	max_right=96	max_right_minus=32	max_right_plus=96	neg_log10_pos_hash_p_value=52.2	new_junction_coverage=0.00	new_junction_read_count=3	polymorphism_frequency=3.622e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.01	side_1_overlap=17	side_1_possible_overlap_registers=148	side_1_read_count=1031	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=131	side_2_read_count=738	side_2_redundant=0	total_non_overlap_reads=3
JC	848	.	Xen14_129	72	-1	Xen14_2	77	-1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=3	flanking_left=72	flanking_right=77	frequency=NA	junction_possible_overlap_registers=148	key=Xen14_129__72__-1__Xen14_2__77__-1__0____72__77__1__1	max_left=72	max_left_minus=72	max_left_plus=72	max_min_left=72	max_min_left_minus=72	max_min_left_plus=0	max_min_right=72	max_min_right_minus=0	max_min_right_plus=72	max_pos_hash_score=296	max_right=77	max_right_minus=77	max_right_plus=72	neg_log10_pos_hash_p_value=7.5	new_junction_coverage=0.17	new_junction_read_count=15	polymorphism_frequency=NA	pos_hash_score=4	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=6
JC	849	.	Xen14_13	98318	-1	Xen14_168	590	-1	0	alignment_overlap=39	coverage_minus=23	coverage_plus=20	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=109	key=Xen14_13__98318__-1__Xen14_168__629__-1__39____150__150__0__0	max_left=110	max_left_minus=104	max_left_plus=110	max_min_left=55	max_min_left_minus=54	max_min_left_plus=55	max_min_right=52	max_min_right_minus=52	max_min_right_plus=50	max_pos_hash_score=218	max_right=71	max_right_minus=71	max_right_plus=66	neg_log10_pos_hash_p_value=1.4	new_junction_coverage=0.08	new_junction_read_count=44	polymorphism_frequency=1.000e+00	pos_hash_score=27	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=39	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=109	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=43
JC	850	.	Xen14_131	846	1	Xen14_151	1	1	0	alignment_overlap=0	coverage_minus=18	coverage_plus=37	flanking_left=150	flanking_right=150	frequency=7.709e-01	junction_possible_overlap_registers=148	key=Xen14_131__846__1__Xen14_151__1__1__0____150__150__0__0	max_left=147	max_left_minus=146	max_left_plus=147	max_min_left=21	max_min_left_minus=21	max_min_left_plus=21	max_min_right=69	max_min_right_minus=69	max_min_right_plus=65	max_pos_hash_score=296	max_right=149	max_right_minus=148	max_right_plus=149	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.65	new_junction_read_count=69	polymorphism_frequency=7.709e-01	pos_hash_score=35	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.62	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=41	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=55
JC	851	.	Xen14_132	1586	1	Xen14_175	119	-1	-3	alignment_overlap=-3	coverage_minus=16	coverage_plus=8	flanking_left=150	flanking_right=119	frequency=1.673e-01	junction_possible_overlap_registers=145	key=Xen14_132__1586__1__Xen14_175__119__-1__-3__TGA__150__119__0__0	max_left=140	max_left_minus=140	max_left_plus=139	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=22	max_min_right_minus=22	max_min_right_plus=22	max_pos_hash_score=290	max_right=22	max_right_minus=22	max_right_plus=22	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.21	new_junction_read_count=25	polymorphism_frequency=1.673e-01	pos_hash_score=12	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.02	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=171	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.09	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=83	side_2_redundant=0	total_non_overlap_reads=24	unique_read_sequence=TGA
JC	852	.	Xen14_132	1586	1	Xen14_47	36191	1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=2	flanking_left=150	flanking_right=84	frequency=4.545e-02	junction_possible_overlap_registers=148	key=Xen14_132__1586__1__Xen14_47__36191__1__0____150__84__0__0	max_left=149	max_left_minus=71	max_left_plus=149	max_min_left=71	max_min_left_minus=71	max_min_left_plus=70	max_min_right=1	max_min_right_minus=0	max_min_right_plus=1	max_pos_hash_score=296	max_right=81	max_right_minus=81	max_right_plus=80	neg_log10_pos_hash_p_value=12.6	new_junction_coverage=0.04	new_junction_read_count=6	polymorphism_frequency=4.545e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.02	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=171	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.59	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=81	side_2_redundant=0	total_non_overlap_reads=4
JC	853	.	Xen14_132	1586	1	Xen14_90	74	-1	0	alignment_overlap=0	coverage_minus=21	coverage_plus=38	flanking_left=150	flanking_right=74	frequency=2.723e-01	junction_possible_overlap_registers=148	key=Xen14_132__1586__1__Xen14_90__74__-1__0____150__74__0__1	max_left=149	max_left_minus=140	max_left_plus=149	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=74	max_min_right_minus=70	max_min_right_plus=74	max_pos_hash_score=296	max_right=74	max_right_minus=70	max_right_plus=74	neg_log10_pos_hash_p_value=3.5	new_junction_coverage=0.46	new_junction_read_count=64	polymorphism_frequency=2.723e-01	pos_hash_score=34	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.02	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=171	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=59
JC	854	.	Xen14_134	121	-1	Xen14_16	81842	1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=5	flanking_left=120	flanking_right=100	frequency=1.542e-01	junction_possible_overlap_registers=147	key=Xen14_134__121__-1__Xen14_16__81841__1__1____120__100__0__0	max_left=71	max_left_minus=71	max_left_plus=68	max_min_left=71	max_min_left_minus=71	max_min_left_plus=68	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=294	max_right=93	max_right_minus=78	max_right_plus=93	neg_log10_pos_hash_p_value=8.4	new_junction_coverage=0.12	new_junction_read_count=12	polymorphism_frequency=1.542e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.49	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=51	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=147	side_2_read_count=81	side_2_redundant=0	total_non_overlap_reads=6
JC	855	.	Xen14_134	124	1	Xen14_80	11959	1	-6	alignment_overlap=-6	coverage_minus=5	coverage_plus=1	flanking_left=150	flanking_right=77	frequency=2.099e-01	junction_possible_overlap_registers=142	key=Xen14_134__124__1__Xen14_80__11959__1__-6__CCCTGT__150__77__0__1	max_left=85	max_left_minus=85	max_left_plus=85	max_min_left=63	max_min_left_minus=63	max_min_left_plus=0	max_min_right=71	max_min_right_minus=71	max_min_right_plus=59	max_pos_hash_score=284	max_right=77	max_right_minus=77	max_right_plus=59	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.12	new_junction_read_count=13	polymorphism_frequency=2.099e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.49	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=51	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=6	unique_read_sequence=CCCTGT
JC	856	.	Xen14_134	212	1	Xen14_134	213	-1	-13	alignment_overlap=-13	coverage_minus=15	coverage_plus=22	flanking_left=150	flanking_right=150	frequency=3.394e-01	junction_possible_overlap_registers=135	key=Xen14_134__212__1__Xen14_134__213__-1__-13__GTATCAGTTAGCG__150__150__0__0	max_left=135	max_left_minus=135	max_left_plus=130	max_min_left=67	max_min_left_minus=67	max_min_left_plus=67	max_min_right=64	max_min_right_minus=64	max_min_right_plus=63	max_pos_hash_score=270	max_right=100	max_right_minus=100	max_right_plus=89	neg_log10_pos_hash_p_value=1.7	new_junction_coverage=0.43	new_junction_read_count=41	polymorphism_frequency=3.394e-01	pos_hash_score=29	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.86	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=89	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.83	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=86	side_2_redundant=0	total_non_overlap_reads=37	unique_read_sequence=GTATCAGTTAGCG
JC	857	.	Xen14_134	693	1	Xen14_175	119	-1	-3	alignment_overlap=-3	coverage_minus=4	coverage_plus=3	flanking_left=150	flanking_right=119	frequency=7.064e-02	junction_possible_overlap_registers=145	key=Xen14_134__693__1__Xen14_175__119__-1__-3__TGA__150__119__0__0	max_left=146	max_left_minus=146	max_left_plus=143	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=20	max_min_right_minus=12	max_min_right_plus=20	max_pos_hash_score=290	max_right=20	max_right_minus=12	max_right_plus=20	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.08	new_junction_read_count=7	polymorphism_frequency=7.064e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.01	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=105	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.09	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=83	side_2_redundant=0	total_non_overlap_reads=7	unique_read_sequence=TGA
JC	858	.	Xen14_134	693	1	Xen14_47	36191	1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=3	flanking_left=150	flanking_right=84	frequency=1.389e-01	junction_possible_overlap_registers=148	key=Xen14_134__693__1__Xen14_47__36191__1__0____150__84__0__0	max_left=146	max_left_minus=146	max_left_plus=146	max_min_left=67	max_min_left_minus=67	max_min_left_plus=31	max_min_right=4	max_min_right_minus=4	max_min_right_plus=3	max_pos_hash_score=296	max_right=83	max_right_minus=83	max_right_plus=81	neg_log10_pos_hash_p_value=8.5	new_junction_coverage=0.12	new_junction_read_count=15	polymorphism_frequency=1.389e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.01	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=105	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.59	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=81	side_2_redundant=0	total_non_overlap_reads=6
JC	859	.	Xen14_134	693	1	Xen14_90	74	-1	0	alignment_overlap=0	coverage_minus=19	coverage_plus=10	flanking_left=150	flanking_right=74	frequency=2.336e-01	junction_possible_overlap_registers=148	key=Xen14_134__693__1__Xen14_90__74__-1__0____150__74__0__1	max_left=146	max_left_minus=146	max_left_plus=146	max_min_left=44	max_min_left_minus=44	max_min_left_plus=0	max_min_right=63	max_min_right_minus=63	max_min_right_plus=62	max_pos_hash_score=296	max_right=63	max_right_minus=63	max_right_plus=62	neg_log10_pos_hash_p_value=3.1	new_junction_coverage=0.30	new_junction_read_count=32	polymorphism_frequency=2.336e-01	pos_hash_score=22	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.01	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=105	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=29
JC	860	.	Xen14_134	695	-1	Xen14_162	691	1	0	alignment_overlap=0	coverage_minus=13	coverage_plus=11	flanking_left=150	flanking_right=75	frequency=2.374e-01	junction_possible_overlap_registers=148	key=Xen14_134__695__-1__Xen14_162__691__1__0____150__75__0__1	max_left=149	max_left_minus=149	max_left_plus=141	max_min_left=69	max_min_left_minus=69	max_min_left_plus=0	max_min_right=74	max_min_right_minus=68	max_min_right_plus=74	max_pos_hash_score=296	max_right=75	max_right_minus=75	max_right_plus=74	neg_log10_pos_hash_p_value=3.2	new_junction_coverage=0.26	new_junction_read_count=33	polymorphism_frequency=2.374e-01	pos_hash_score=21	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.02	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=106	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=24
JC	861	.	Xen14_134	1002	1	Xen14_96	5905	-1	-50	alignment_overlap=-50	coverage_minus=20	coverage_plus=15	flanking_left=150	flanking_right=150	frequency=4.593e-01	junction_possible_overlap_registers=98	key=Xen14_134__1002__1__Xen14_96__5905__-1__-50__TATCAGGAAGAGCAGACGACACGATAACAGGGTTGTTGGTGCGGGGGGCT__150__150__0__0	max_left=97	max_left_minus=90	max_left_plus=97	max_min_left=47	max_min_left_minus=47	max_min_left_plus=36	max_min_right=45	max_min_right_minus=42	max_min_right_plus=45	max_pos_hash_score=196	max_right=99	max_right_minus=99	max_right_plus=98	neg_log10_pos_hash_p_value=1.5	new_junction_coverage=0.48	new_junction_read_count=36	polymorphism_frequency=4.593e-01	pos_hash_score=22	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.63	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=65	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.52	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=63	side_2_redundant=0	total_non_overlap_reads=35	unique_read_sequence=TATCAGGAAGAGCAGACGACACGATAACAGGGTTGTTGGTGCGGGGGGCT
JC	862	.	Xen14_136	1	1	Xen14_170	580	-1	0	alignment_overlap=39	coverage_minus=32	coverage_plus=22	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=109	key=Xen14_136__1__1__Xen14_170__619__-1__39____150__150__0__0	max_left=110	max_left_minus=98	max_left_plus=110	max_min_left=38	max_min_left_minus=38	max_min_left_plus=38	max_min_right=38	max_min_right_minus=38	max_min_right_plus=38	max_pos_hash_score=218	max_right=108	max_right_minus=108	max_right_plus=95	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.86	new_junction_read_count=72	polymorphism_frequency=1.000e+00	pos_hash_score=35	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=39	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=109	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=54
JC	863	.	Xen14_136	77	-1	Xen14_158	76	-1	0	alignment_overlap=1	coverage_minus=3	coverage_plus=2	flanking_left=76	flanking_right=76	frequency=NA	junction_possible_overlap_registers=147	key=Xen14_136__77__-1__Xen14_158__77__-1__1____76__76__1__1	max_left=76	max_left_minus=76	max_left_plus=76	max_min_left=67	max_min_left_minus=67	max_min_left_plus=0	max_min_right=73	max_min_right_minus=73	max_min_right_plus=70	max_pos_hash_score=294	max_right=76	max_right_minus=76	max_right_plus=70	neg_log10_pos_hash_p_value=6.3	new_junction_coverage=0.19	new_junction_read_count=21	polymorphism_frequency=NA	pos_hash_score=4	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=5
JC	864	.	Xen14_136	1566	-1	Xen14_141	1	1	-1	alignment_overlap=-1	coverage_minus=317	coverage_plus=241	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=147	key=Xen14_136__1566__-1__Xen14_141__1__1__-1__C__150__150__0__0	max_left=144	max_left_minus=132	max_left_plus=144	max_min_left=71	max_min_left_minus=71	max_min_left_plus=71	max_min_right=68	max_min_right_minus=67	max_min_right_plus=68	max_pos_hash_score=294	max_right=148	max_right_minus=148	max_right_plus=147	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=0.61	new_junction_read_count=563	polymorphism_frequency=9.991e-01	pos_hash_score=148	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=558	unique_read_sequence=C
JC	865	.	Xen14_138	75	-1	Xen14_45	40401	-1	-62	alignment_overlap=-62	coverage_minus=35	coverage_plus=32	flanking_left=75	flanking_right=150	frequency=1	junction_possible_overlap_registers=86	key=Xen14_138__75__-1__Xen14_45__40401__-1__-62__GAAAGGGGGGATTTCCGGTCGCAGTGTAAAAGGAAAACGTATCCATACCCGGGCCATTCACA__75__150__1__0	max_left=75	max_left_minus=69	max_left_plus=75	max_min_left=43	max_min_left_minus=38	max_min_left_plus=43	max_min_right=44	max_min_right_minus=44	max_min_right_plus=40	max_pos_hash_score=172	max_right=87	max_right_minus=87	max_right_plus=81	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=0.94	new_junction_read_count=77	polymorphism_frequency=1.000e+00	pos_hash_score=42	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=67	unique_read_sequence=GAAAGGGGGGATTTCCGGTCGCAGTGTAAAAGGAAAACGTATCCATACCCGGGCCATTCACA
JC	866	.	Xen14_138	1231	1	Xen14_166	327	1	0	alignment_overlap=1	coverage_minus=15	coverage_plus=6	flanking_left=130	flanking_right=150	frequency=2.804e-02	junction_possible_overlap_registers=147	key=Xen14_138__1231__1__Xen14_166__326__1__1____130__150__0__0	max_left=130	max_left_minus=126	max_left_plus=130	max_min_left=50	max_min_left_minus=50	max_min_left_plus=16	max_min_right=70	max_min_right_minus=70	max_min_right_plus=30	max_pos_hash_score=294	max_right=133	max_right_minus=113	max_right_plus=133	neg_log10_pos_hash_p_value=3.8	new_junction_coverage=0.02	new_junction_read_count=22	polymorphism_frequency=2.804e-02	pos_hash_score=13	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.87	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=111	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.61	side_2_overlap=0	side_2_possible_overlap_registers=147	side_2_read_count=1415	side_2_redundant=0	total_non_overlap_reads=21
JC	867	.	Xen14_138	1231	1	Xen14_17	80156	-1	0	alignment_overlap=1	coverage_minus=5	coverage_plus=4	flanking_left=130	flanking_right=150	frequency=7.266e-02	junction_possible_overlap_registers=147	key=Xen14_138__1231__1__Xen14_17__80157__-1__1____130__150__0__0	max_left=130	max_left_minus=126	max_left_plus=130	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=30	max_min_right_minus=28	max_min_right_plus=30	max_pos_hash_score=294	max_right=30	max_right_minus=28	max_right_plus=30	neg_log10_pos_hash_p_value=14.9	new_junction_coverage=0.07	new_junction_read_count=10	polymorphism_frequency=7.266e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.87	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=111	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.88	side_2_overlap=0	side_2_possible_overlap_registers=147	side_2_read_count=145	side_2_redundant=0	total_non_overlap_reads=9
JC	868	.	Xen14_138	1232	1	Xen14_143	808	1	-2	alignment_overlap=-2	coverage_minus=34	coverage_plus=34	flanking_left=130	flanking_right=150	frequency=1.154e-01	junction_possible_overlap_registers=146	key=Xen14_138__1232__1__Xen14_143__808__1__-2__GT__130__150__0__0	max_left=130	max_left_minus=128	max_left_plus=130	max_min_left=65	max_min_left_minus=46	max_min_left_plus=65	max_min_right=71	max_min_right_minus=71	max_min_right_plus=69	max_pos_hash_score=292	max_right=146	max_right_minus=142	max_right_plus=146	neg_log10_pos_hash_p_value=1.7	new_junction_coverage=0.18	new_junction_read_count=77	polymorphism_frequency=1.154e-01	pos_hash_score=45	prediction=polymorphism	reject=FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.85	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=108	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.46	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=1089	side_2_redundant=0	total_non_overlap_reads=68	unique_read_sequence=GT
JC	869	.	Xen14_138	1232	1	Xen14_166	103	1	0	alignment_overlap=0	coverage_minus=21	coverage_plus=32	flanking_left=130	flanking_right=150	frequency=3.936e-02	junction_possible_overlap_registers=148	key=Xen14_138__1232__1__Xen14_166__103__1__0____130__150__0__0	max_left=130	max_left_minus=121	max_left_plus=130	max_min_left=52	max_min_left_minus=52	max_min_left_plus=52	max_min_right=70	max_min_right_minus=59	max_min_right_plus=70	max_pos_hash_score=296	max_right=144	max_right_minus=144	max_right_plus=144	neg_log10_pos_hash_p_value=2.2	new_junction_coverage=0.04	new_junction_read_count=53	polymorphism_frequency=3.936e-02	pos_hash_score=40	prediction=polymorphism	reject=FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.85	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=108	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.06	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=2479	side_2_redundant=0	total_non_overlap_reads=53
JC	870	.	Xen14_138	1232	1	Xen14_202	276	1	0	alignment_overlap=0	coverage_minus=51	coverage_plus=20	flanking_left=130	flanking_right=146	frequency=1.619e-01	junction_possible_overlap_registers=148	key=Xen14_138__1232__1__Xen14_202__276__1__0____130__146__0__0	max_left=130	max_left_minus=126	max_left_plus=130	max_min_left=52	max_min_left_minus=41	max_min_left_plus=52	max_min_right=65	max_min_right_minus=65	max_min_right_plus=56	max_pos_hash_score=296	max_right=145	max_right_minus=145	max_right_plus=131	neg_log10_pos_hash_p_value=2.2	new_junction_coverage=0.24	new_junction_read_count=82	polymorphism_frequency=1.619e-01	pos_hash_score=42	prediction=polymorphism	reject=FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.85	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=108	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.35	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=741	side_2_redundant=0	total_non_overlap_reads=71
JC	871	.	Xen14_138	1232	1	Xen14_206	331	-1	0	alignment_overlap=1	coverage_minus=39	coverage_plus=44	flanking_left=129	flanking_right=150	frequency=2.255e-01	junction_possible_overlap_registers=147	key=Xen14_138__1232__1__Xen14_206__332__-1__1____129__150__0__0	max_left=129	max_left_minus=125	max_left_plus=129	max_min_left=49	max_min_left_minus=49	max_min_left_plus=46	max_min_right=71	max_min_right_minus=70	max_min_right_plus=71	max_pos_hash_score=294	max_right=146	max_right_minus=146	max_right_plus=146	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.16	new_junction_read_count=83	polymorphism_frequency=2.255e-01	pos_hash_score=60	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.85	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=108	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.50	side_2_overlap=0	side_2_possible_overlap_registers=147	side_2_read_count=463	side_2_redundant=0	total_non_overlap_reads=83
JC	872	.	Xen14_138	1295	1	Xen14_141	1	1	0	alignment_overlap=0	coverage_minus=10	coverage_plus=2	flanking_left=67	flanking_right=150	frequency=1	junction_possible_overlap_registers=148	key=Xen14_138__1295__1__Xen14_141__1__1__0____67__150__1__0	max_left=52	max_left_minus=52	max_left_plus=30	max_min_left=52	max_min_left_minus=52	max_min_left_plus=30	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=296	max_right=136	max_right_minus=136	max_right_plus=120	neg_log10_pos_hash_p_value=12.2	new_junction_coverage=0.01	new_junction_read_count=12	polymorphism_frequency=1.000e+00	pos_hash_score=9	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=12
JC	873	.	Xen14_138	1361	-1	Xen14_141	47	1	0	alignment_overlap=46	coverage_minus=20	coverage_plus=32	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=102	key=Xen14_138__1361__-1__Xen14_141__1__1__46____150__150__0__0	max_left=101	max_left_minus=101	max_left_plus=99	max_min_left=48	max_min_left_minus=37	max_min_left_plus=48	max_min_right=51	max_min_right_minus=41	max_min_right_plus=51	max_pos_hash_score=204	max_right=72	max_right_minus=68	max_right_plus=72	neg_log10_pos_hash_p_value=1.4	new_junction_coverage=0.08	new_junction_read_count=52	polymorphism_frequency=1.000e+00	pos_hash_score=32	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=46	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=102	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=52
JC	874	.	Xen14_139	1349	-1	Xen14_148	954	1	0	alignment_overlap=11	coverage_minus=7	coverage_plus=9	flanking_left=150	flanking_right=36	frequency=1	junction_possible_overlap_registers=137	key=Xen14_139__1349__-1__Xen14_148__943__1__11____150__36__0__1	max_left=122	max_left_minus=119	max_left_plus=122	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=32	max_min_right_minus=30	max_min_right_plus=32	max_pos_hash_score=274	max_right=32	max_right_minus=30	max_right_plus=32	neg_log10_pos_hash_p_value=2.0	new_junction_coverage=0.29	new_junction_read_count=26	polymorphism_frequency=1.000e+00	pos_hash_score=11	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=11	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=16
JC	875	.	Xen14_141	1	1	Xen14_162	1	1	-8	alignment_overlap=-8	coverage_minus=35	coverage_plus=21	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=140	key=Xen14_141__1__1__Xen14_162__1__1__-8__GCTCTCCT__150__150__0__0	max_left=65	max_left_minus=65	max_left_plus=65	max_min_left=65	max_min_left_minus=65	max_min_left_plus=65	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=280	max_right=138	max_right_minus=138	max_right_plus=137	neg_log10_pos_hash_p_value=4.7	new_junction_coverage=0.07	new_junction_read_count=58	polymorphism_frequency=1.000e+00	pos_hash_score=33	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=56	unique_read_sequence=GCTCTCCT
JC	876	.	Xen14_141	1	1	Xen14_39	48485	-1	-7	alignment_overlap=-7	coverage_minus=17	coverage_plus=13	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=141	key=Xen14_141__1__1__Xen14_39__48485__-1__-7__GCTCTCC__150__150__0__0	max_left=57	max_left_minus=49	max_left_plus=57	max_min_left=57	max_min_left_minus=49	max_min_left_plus=57	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=282	max_right=140	max_right_minus=137	max_right_plus=140	neg_log10_pos_hash_p_value=1.6	new_junction_coverage=0.04	new_junction_read_count=32	polymorphism_frequency=1.000e+00	pos_hash_score=23	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=30	unique_read_sequence=GCTCTCC
JC	877	.	Xen14_141	1	1	Xen14_52	1	1	-7	alignment_overlap=-7	coverage_minus=71	coverage_plus=83	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=141	key=Xen14_141__1__1__Xen14_52__1__1__-7__ACTCTCC__150__150__0__0	max_left=141	max_left_minus=141	max_left_plus=141	max_min_left=69	max_min_left_minus=66	max_min_left_plus=69	max_min_right=71	max_min_right_minus=69	max_min_right_plus=71	max_pos_hash_score=282	max_right=139	max_right_minus=138	max_right_plus=139	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=0.18	new_junction_read_count=155	polymorphism_frequency=1.000e+00	pos_hash_score=92	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=154	unique_read_sequence=ACTCTCC
JC	878	.	Xen14_141	1	1	Xen14_54	28579	-1	-7	alignment_overlap=-7	coverage_minus=52	coverage_plus=34	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=141	key=Xen14_141__1__1__Xen14_54__28579__-1__-7__GCTCTCC__150__150__0__0	max_left=65	max_left_minus=65	max_left_plus=65	max_min_left=65	max_min_left_minus=65	max_min_left_plus=65	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=282	max_right=140	max_right_minus=137	max_right_plus=140	neg_log10_pos_hash_p_value=3.4	new_junction_coverage=0.11	new_junction_read_count=95	polymorphism_frequency=1.000e+00	pos_hash_score=42	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=86	unique_read_sequence=GCTCTCC
JC	879	.	Xen14_141	1	1	Xen14_69	14625	-1	-8	alignment_overlap=-8	coverage_minus=17	coverage_plus=24	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=140	key=Xen14_141__1__1__Xen14_69__14625__-1__-8__GCTCTCCT__150__150__0__0	max_left=65	max_left_minus=65	max_left_plus=65	max_min_left=65	max_min_left_minus=65	max_min_left_plus=65	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=280	max_right=139	max_right_minus=121	max_right_plus=139	neg_log10_pos_hash_p_value=2.0	new_junction_coverage=0.05	new_junction_read_count=43	polymorphism_frequency=1.000e+00	pos_hash_score=30	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=41	unique_read_sequence=GCTCTCCT
JC	880	.	Xen14_141	1	1	Xen14_75	1	1	-8	alignment_overlap=-8	coverage_minus=18	coverage_plus=11	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=140	key=Xen14_141__1__1__Xen14_75__1__1__-8__GCTCTCCT__150__150__0__0	max_left=60	max_left_minus=60	max_left_plus=59	max_min_left=60	max_min_left_minus=60	max_min_left_plus=59	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=280	max_right=137	max_right_minus=135	max_right_plus=137	neg_log10_pos_hash_p_value=4.3	new_junction_coverage=0.03	new_junction_read_count=29	polymorphism_frequency=1.000e+00	pos_hash_score=20	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=29	unique_read_sequence=GCTCTCCT
JC	881	.	Xen14_141	1	1	Xen14_94	1	1	-9	alignment_overlap=-9	coverage_minus=6	coverage_plus=6	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=139	key=Xen14_141__1__1__Xen14_94__1__1__-9__GCTCTCCTG__150__150__0__0	max_left=60	max_left_minus=60	max_left_plus=41	max_min_left=60	max_min_left_minus=60	max_min_left_plus=41	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=278	max_right=134	max_right_minus=119	max_right_plus=134	neg_log10_pos_hash_p_value=4.2	new_junction_coverage=0.01	new_junction_read_count=12	polymorphism_frequency=1.000e+00	pos_hash_score=11	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=12	unique_read_sequence=GCTCTCCTG
JC	882	.	Xen14_142	75	-1	Xen14_159	729	-1	0	alignment_overlap=0	coverage_minus=8	coverage_plus=5	flanking_left=75	flanking_right=150	frequency=2.000e-01	junction_possible_overlap_registers=148	key=Xen14_142__75__-1__Xen14_159__729__-1__0____75__150__1__0	max_left=72	max_left_minus=72	max_left_plus=60	max_min_left=67	max_min_left_minus=67	max_min_left_plus=60	max_min_right=59	max_min_right_minus=59	max_min_right_plus=0	max_pos_hash_score=296	max_right=104	max_right_minus=104	max_right_plus=94	neg_log10_pos_hash_p_value=3.9	new_junction_coverage=0.15	new_junction_read_count=13	polymorphism_frequency=2.000e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.42	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=52	side_2_redundant=0	total_non_overlap_reads=13
JC	883	.	Xen14_143	74	1	Xen14_143	77	-1	-3	alignment_overlap=-3	coverage_minus=281	coverage_plus=272	flanking_left=150	flanking_right=77	frequency=1	junction_possible_overlap_registers=145	key=Xen14_143__74__1__Xen14_143__77__-1__-3__AGC__150__77__0__0	max_left=142	max_left_minus=142	max_left_plus=142	max_min_left=73	max_min_left_minus=73	max_min_left_plus=73	max_min_right=73	max_min_right_minus=72	max_min_right_plus=73	max_pos_hash_score=290	max_right=77	max_right_minus=77	max_right_plus=77	neg_log10_pos_hash_p_value=0.9	new_junction_coverage=0.87	new_junction_read_count=637	polymorphism_frequency=8.564e-01	pos_hash_score=126	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.12	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=87	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.18	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=131	side_2_redundant=0	total_non_overlap_reads=553	unique_read_sequence=AGC
JC	884	.	Xen14_143	77	-1	Xen14_47	36189	1	-22	alignment_overlap=-22	coverage_minus=5	coverage_plus=10	flanking_left=77	flanking_right=86	frequency=2.262e-01	junction_possible_overlap_registers=126	key=Xen14_143__77__-1__Xen14_47__36189__1__-22__GCTCTGCACTGACACGTGCCGA__77__86__0__0	max_left=55	max_left_minus=49	max_left_plus=55	max_min_left=55	max_min_left_minus=49	max_min_left_plus=55	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=252	max_right=86	max_right_minus=86	max_right_plus=86	neg_log10_pos_hash_p_value=10.8	new_junction_coverage=0.07	new_junction_read_count=27	polymorphism_frequency=2.262e-01	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.18	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=131	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.62	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=86	side_2_redundant=0	total_non_overlap_reads=15	unique_read_sequence=GCTCTGCACTGACACGTGCCGA
JC	885	.	Xen14_143	812	-1	Xen14_180	73	-1	0	alignment_overlap=2	coverage_minus=24	coverage_plus=13	flanking_left=150	flanking_right=73	frequency=4.280e-02	junction_possible_overlap_registers=146	key=Xen14_143__812__-1__Xen14_180__75__-1__2____150__73__0__1	max_left=110	max_left_minus=106	max_left_plus=110	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=73	max_min_right_minus=73	max_min_right_plus=73	max_pos_hash_score=292	max_right=73	max_right_minus=73	max_right_plus=73	neg_log10_pos_hash_p_value=1.2	new_junction_coverage=0.12	new_junction_read_count=49	polymorphism_frequency=4.280e-02	pos_hash_score=24	prediction=polymorphism	reject=FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.49	side_1_overlap=2	side_1_possible_overlap_registers=148	side_1_read_count=1111	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=37
JC	886	.	Xen14_143	812	-1	Xen14_38	48184	1	0	alignment_overlap=2	coverage_minus=6	coverage_plus=7	flanking_left=150	flanking_right=150	frequency=3.849e-02	junction_possible_overlap_registers=146	key=Xen14_143__812__-1__Xen14_38__48182__1__2____150__150__0__0	max_left=68	max_left_minus=68	max_left_plus=68	max_min_left=68	max_min_left_minus=68	max_min_left_plus=68	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=292	max_right=107	max_right_minus=90	max_right_plus=107	neg_log10_pos_hash_p_value=8.1	new_junction_coverage=0.06	new_junction_read_count=24	polymorphism_frequency=3.849e-02	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.49	side_1_overlap=2	side_1_possible_overlap_registers=148	side_1_read_count=1111	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.96	side_2_overlap=0	side_2_possible_overlap_registers=146	side_2_read_count=103	side_2_redundant=0	total_non_overlap_reads=13
JC	887	.	Xen14_145	1	1	Xen14_183	44	1	0	alignment_overlap=43	coverage_minus=21	coverage_plus=21	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=105	key=Xen14_145__1__1__Xen14_183__1__1__43____150__150__0__0	max_left=70	max_left_minus=70	max_left_plus=59	max_min_left=44	max_min_left_minus=33	max_min_left_plus=44	max_min_right=53	max_min_right_minus=53	max_min_right_plus=53	max_pos_hash_score=210	max_right=104	max_right_minus=100	max_right_plus=104	neg_log10_pos_hash_p_value=2.5	new_junction_coverage=0.15	new_junction_read_count=42	polymorphism_frequency=1.000e+00	pos_hash_score=26	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=43	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=105	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=42
JC	888	.	Xen14_145	1	1	Xen14_32	55348	-1	0	alignment_overlap=43	coverage_minus=17	coverage_plus=23	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=105	key=Xen14_145__1__1__Xen14_32__55391__-1__43____150__150__0__0	max_left=71	max_left_minus=63	max_left_plus=71	max_min_left=53	max_min_left_minus=44	max_min_left_plus=53	max_min_right=53	max_min_right_minus=53	max_min_right_plus=47	max_pos_hash_score=210	max_right=104	max_right_minus=104	max_right_plus=103	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.16	new_junction_read_count=40	polymorphism_frequency=1.000e+00	pos_hash_score=24	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=43	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=105	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=40
JC	889	.	Xen14_145	1	1	Xen14_54	42	1	0	alignment_overlap=41	coverage_minus=115	coverage_plus=122	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=107	key=Xen14_145__1__1__Xen14_54__1__1__41____150__150__0__0	max_left=108	max_left_minus=108	max_left_plus=108	max_min_left=54	max_min_left_minus=53	max_min_left_plus=54	max_min_right=54	max_min_right_minus=53	max_min_right_plus=54	max_pos_hash_score=214	max_right=108	max_right_minus=101	max_right_plus=108	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=0.84	new_junction_read_count=246	polymorphism_frequency=1.000e+00	pos_hash_score=100	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=41	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=107	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=237
JC	890	.	Xen14_145	1	1	Xen14_85	11155	-1	0	alignment_overlap=42	coverage_minus=34	coverage_plus=40	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=106	key=Xen14_145__1__1__Xen14_85__11197__-1__42____150__150__0__0	max_left=69	max_left_minus=69	max_left_plus=66	max_min_left=53	max_min_left_minus=49	max_min_left_plus=53	max_min_right=52	max_min_right_minus=50	max_min_right_plus=52	max_pos_hash_score=212	max_right=107	max_right_minus=105	max_right_plus=107	neg_log10_pos_hash_p_value=1.1	new_junction_coverage=0.27	new_junction_read_count=75	polymorphism_frequency=1.000e+00	pos_hash_score=43	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=42	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=106	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=74
JC	891	.	Xen14_145	1	1	Xen14_86	3481	-1	-33	alignment_overlap=-33	coverage_minus=31	coverage_plus=19	flanking_left=150	flanking_right=150	frequency=5.801e-01	junction_possible_overlap_registers=115	key=Xen14_145__1__1__Xen14_86__3481__-1__-33__GGAGGCAATTGCAATATCTCTGTGAACTTACAC__150__150__0__0	max_left=109	max_left_minus=109	max_left_plus=104	max_min_left=55	max_min_left_minus=55	max_min_left_plus=55	max_min_right=56	max_min_right_minus=56	max_min_right_plus=54	max_pos_hash_score=230	max_right=116	max_right_minus=115	max_right_plus=116	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.18	new_junction_read_count=51	polymorphism_frequency=5.801e-01	pos_hash_score=36	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.04	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=95	side_2_redundant=0	total_non_overlap_reads=50	unique_read_sequence=GGAGGCAATTGCAATATCTCTGTGAACTTACAC
JC	892	.	Xen14_145	36	1	Xen14_85	11189	-1	-1	alignment_overlap=-1	coverage_minus=2	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=3.113e-02	junction_possible_overlap_registers=147	key=Xen14_145__36__1__Xen14_85__11189__-1__-1__C__150__150__0__0	max_left=81	max_left_minus=81	max_left_plus=52	max_min_left=52	max_min_left_minus=18	max_min_left_plus=52	max_min_right=68	max_min_right_minus=68	max_min_right_plus=0	max_pos_hash_score=294	max_right=131	max_right_minus=131	max_right_plus=97	neg_log10_pos_hash_p_value=17.1	new_junction_coverage=0.01	new_junction_read_count=3	polymorphism_frequency=3.113e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.27	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=174	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.11	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=14	side_2_redundant=0	total_non_overlap_reads=3	unique_read_sequence=C
JC	893	.	Xen14_145	561	1	Xen14_145	593	1	0	alignment_overlap=8	coverage_minus=7	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=1.402e-02	junction_possible_overlap_registers=140	key=Xen14_145__561__1__Xen14_145__585__1__8____150__150__0__0	max_left=32	max_left_minus=32	max_left_plus=10	max_min_left=32	max_min_left_minus=32	max_min_left_plus=10	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=280	max_right=134	max_right_minus=123	max_right_plus=134	neg_log10_pos_hash_p_value=77.0	new_junction_coverage=0.01	new_junction_read_count=9	polymorphism_frequency=1.402e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.02	side_1_overlap=8	side_1_possible_overlap_registers=148	side_1_read_count=667	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.03	side_2_overlap=0	side_2_possible_overlap_registers=140	side_2_read_count=635	side_2_redundant=0	total_non_overlap_reads=9
JC	894	.	Xen14_148	989	-1	Xen14_182	431	-1	0	alignment_overlap=47	coverage_minus=19	coverage_plus=18	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=101	key=Xen14_148__989__-1__Xen14_182__478__-1__47____150__150__0__0	max_left=101	max_left_minus=87	max_left_plus=101	max_min_left=45	max_min_left_minus=45	max_min_left_plus=43	max_min_right=49	max_min_right_minus=49	max_min_right_plus=15	max_pos_hash_score=202	max_right=102	max_right_minus=101	max_right_plus=102	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.59	new_junction_read_count=37	polymorphism_frequency=1.000e+00	pos_hash_score=23	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=47	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=101	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=37
JC	895	.	Xen14_149	1	1	Xen14_82	1	1	0	alignment_overlap=0	coverage_minus=38	coverage_plus=64	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=148	key=Xen14_149__1__1__Xen14_82__1__1__0____150__150__0__0	max_left=148	max_left_minus=148	max_left_plus=145	max_min_left=71	max_min_left_minus=70	max_min_left_plus=71	max_min_right=71	max_min_right_minus=71	max_min_right_plus=69	max_pos_hash_score=296	max_right=149	max_right_minus=146	max_right_plus=149	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=0.97	new_junction_read_count=103	polymorphism_frequency=1.000e+00	pos_hash_score=68	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=102
JC	896	.	Xen14_149	980	-1	Xen14_82	1	1	0	alignment_overlap=0	coverage_minus=56	coverage_plus=51	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=148	key=Xen14_149__980__-1__Xen14_82__1__1__0____150__150__0__0	max_left=147	max_left_minus=147	max_left_plus=141	max_min_left=69	max_min_left_minus=69	max_min_left_plus=64	max_min_right=72	max_min_right_minus=72	max_min_right_plus=72	max_pos_hash_score=296	max_right=149	max_right_minus=144	max_right_plus=149	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.03	new_junction_read_count=110	polymorphism_frequency=1.000e+00	pos_hash_score=66	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=107
JC	897	.	Xen14_155	77	-1	Xen14_198	1	1	-28	alignment_overlap=-28	coverage_minus=12	coverage_plus=6	flanking_left=77	flanking_right=150	frequency=6.307e-01	junction_possible_overlap_registers=120	key=Xen14_155__77__-1__Xen14_198__1__1__-28__CCTTCGGTTTTCATCAGTCCTGATAACA__77__150__0__0	max_left=44	max_left_minus=44	max_left_plus=42	max_min_left=44	max_min_left_minus=44	max_min_left_plus=42	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=240	max_right=116	max_right_minus=116	max_right_plus=113	neg_log10_pos_hash_p_value=1.0	new_junction_coverage=0.32	new_junction_read_count=18	polymorphism_frequency=6.307e-01	pos_hash_score=14	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.53	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=26	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=18	unique_read_sequence=CCTTCGGTTTTCATCAGTCCTGATAACA
JC	898	.	Xen14_156	328	1	Xen14_156	321	-1	0	alignment_overlap=8	coverage_minus=20	coverage_plus=20	flanking_left=150	flanking_right=150	frequency=1.910e-01	junction_possible_overlap_registers=140	key=Xen14_156__328__1__Xen14_156__329__-1__8____150__150__0__0	max_left=141	max_left_minus=141	max_left_plus=134	max_min_left=67	max_min_left_minus=66	max_min_left_plus=67	max_min_right=69	max_min_right_minus=69	max_min_right_plus=67	max_pos_hash_score=280	max_right=76	max_right_minus=76	max_right_plus=75	neg_log10_pos_hash_p_value=5.0	new_junction_coverage=0.26	new_junction_read_count=42	polymorphism_frequency=1.910e-01	pos_hash_score=30	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.10	side_1_overlap=8	side_1_possible_overlap_registers=148	side_1_read_count=189	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.09	side_2_overlap=0	side_2_possible_overlap_registers=140	side_2_read_count=177	side_2_redundant=0	total_non_overlap_reads=40
JC	899	.	Xen14_156	328	1	Xen14_88	9844	-1	0	alignment_overlap=8	coverage_minus=10	coverage_plus=28	flanking_left=150	flanking_right=150	frequency=2.469e-01	junction_possible_overlap_registers=140	key=Xen14_156__328__1__Xen14_88__9852__-1__8____150__150__0__0	max_left=141	max_left_minus=141	max_left_plus=67	max_min_left=67	max_min_left_minus=66	max_min_left_plus=67	max_min_right=1	max_min_right_minus=1	max_min_right_plus=0	max_pos_hash_score=280	max_right=141	max_right_minus=141	max_right_plus=138	neg_log10_pos_hash_p_value=1.9	new_junction_coverage=0.38	new_junction_read_count=44	polymorphism_frequency=2.469e-01	pos_hash_score=26	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.25	side_1_overlap=8	side_1_possible_overlap_registers=148	side_1_read_count=215	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.95	side_2_overlap=0	side_2_possible_overlap_registers=140	side_2_read_count=65	side_2_redundant=0	total_non_overlap_reads=38
JC	900	.	Xen14_159	729	-1	Xen14_183	325	1	0	alignment_overlap=1	coverage_minus=5	coverage_plus=7	flanking_left=150	flanking_right=150	frequency=1.300e-01	junction_possible_overlap_registers=147	key=Xen14_159__729__-1__Xen14_183__324__1__1____150__150__0__0	max_left=103	max_left_minus=93	max_left_plus=103	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=67	max_min_right_minus=60	max_min_right_plus=67	max_pos_hash_score=294	max_right=67	max_right_minus=60	max_right_plus=67	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.10	new_junction_read_count=12	polymorphism_frequency=1.300e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.42	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=52	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.93	side_2_overlap=0	side_2_possible_overlap_registers=147	side_2_read_count=109	side_2_redundant=0	total_non_overlap_reads=12
JC	901	.	Xen14_159	729	-1	Xen14_60	18896	-1	0	alignment_overlap=0	coverage_minus=16	coverage_plus=33	flanking_left=150	flanking_right=150	frequency=4.219e-01	junction_possible_overlap_registers=148	key=Xen14_159__729__-1__Xen14_60__18896__-1__0____150__150__0__0	max_left=147	max_left_minus=132	max_left_plus=147	max_min_left=65	max_min_left_minus=65	max_min_left_plus=64	max_min_right=45	max_min_right_minus=45	max_min_right_plus=45	max_pos_hash_score=296	max_right=138	max_right_minus=138	max_right_plus=134	neg_log10_pos_hash_p_value=2.1	new_junction_coverage=0.50	new_junction_read_count=50	polymorphism_frequency=4.219e-01	pos_hash_score=29	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.42	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=52	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.08	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=85	side_2_redundant=0	total_non_overlap_reads=49
JC	902	.	Xen14_16	81841	1	Xen14_43	39550	1	0	alignment_overlap=1	coverage_minus=4	coverage_plus=8	flanking_left=100	flanking_right=150	frequency=1.843e-01	junction_possible_overlap_registers=147	key=Xen14_16__81841__1__Xen14_43__39549__1__1____100__150__0__0	max_left=100	max_left_minus=100	max_left_plus=100	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=68	max_min_right_minus=65	max_min_right_plus=68	max_pos_hash_score=294	max_right=68	max_right_minus=65	max_right_plus=68	neg_log10_pos_hash_p_value=6.5	new_junction_coverage=0.18	new_junction_read_count=17	polymorphism_frequency=1.843e-01	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=81	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=147	side_2_read_count=70	side_2_redundant=0	total_non_overlap_reads=12
JC	903	.	Xen14_16	81841	1	Xen14_96	5675	-1	0	alignment_overlap=1	coverage_minus=2	coverage_plus=2	flanking_left=100	flanking_right=150	frequency=1.276e-01	junction_possible_overlap_registers=147	key=Xen14_16__81841__1__Xen14_96__5676__-1__1____100__150__0__0	max_left=22	max_left_minus=12	max_left_plus=22	max_min_left=22	max_min_left_minus=12	max_min_left_plus=22	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=294	max_right=135	max_right_minus=135	max_right_plus=132	neg_log10_pos_hash_p_value=11.0	new_junction_coverage=0.10	new_junction_read_count=11	polymorphism_frequency=1.276e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=81	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.58	side_2_overlap=0	side_2_possible_overlap_registers=147	side_2_read_count=70	side_2_redundant=0	total_non_overlap_reads=4
JC	904	.	Xen14_16	81842	1	Xen14_168	629	-1	-15	alignment_overlap=-15	coverage_minus=14	coverage_plus=14	flanking_left=100	flanking_right=150	frequency=4.348e-01	junction_possible_overlap_registers=133	key=Xen14_16__81842__1__Xen14_168__629__-1__-15__AGCTAGGCTGGGGGG__100__150__0__0	max_left=99	max_left_minus=13	max_left_plus=99	max_min_left=21	max_min_left_minus=13	max_min_left_plus=21	max_min_right=57	max_min_right_minus=0	max_min_right_plus=57	max_pos_hash_score=266	max_right=132	max_right_minus=132	max_right_plus=132	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.04	new_junction_read_count=28	polymorphism_frequency=4.348e-01	pos_hash_score=14	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=81	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=28	unique_read_sequence=AGCTAGGCTGGGGGG
JC	905	.	Xen14_16	81842	1	Xen14_96	3976	1	0	alignment_overlap=1	coverage_minus=3	coverage_plus=13	flanking_left=99	flanking_right=150	frequency=1.772e-01	junction_possible_overlap_registers=147	key=Xen14_16__81842__1__Xen14_96__3975__1__1____99__150__0__0	max_left=97	max_left_minus=87	max_left_plus=97	max_min_left=20	max_min_left_minus=20	max_min_left_plus=16	max_min_right=70	max_min_right_minus=62	max_min_right_plus=70	max_pos_hash_score=294	max_right=135	max_right_minus=129	max_right_plus=135	neg_log10_pos_hash_p_value=8.4	new_junction_coverage=0.17	new_junction_read_count=19	polymorphism_frequency=1.772e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=81	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.80	side_2_overlap=0	side_2_possible_overlap_registers=147	side_2_read_count=96	side_2_redundant=0	total_non_overlap_reads=16
JC	906	.	Xen14_160	1	1	Xen14_189	446	-1	0	alignment_overlap=7	coverage_minus=49	coverage_plus=38	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=141	key=Xen14_160__1__1__Xen14_189__453__-1__7____150__150__0__0	max_left=141	max_left_minus=141	max_left_plus=141	max_min_left=66	max_min_left_minus=56	max_min_left_plus=66	max_min_right=69	max_min_right_minus=56	max_min_right_plus=69	max_pos_hash_score=282	max_right=142	max_right_minus=141	max_right_plus=142	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.62	new_junction_read_count=92	polymorphism_frequency=1.000e+00	pos_hash_score=63	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=7	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=141	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=87
JC	907	.	Xen14_160	1	1	Xen14_189	447	-1	0	alignment_overlap=6	coverage_minus=29	coverage_plus=39	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=142	key=Xen14_160__1__1__Xen14_189__453__-1__6____150__150__0__0	max_left=139	max_left_minus=139	max_left_plus=134	max_min_left=71	max_min_left_minus=68	max_min_left_plus=71	max_min_right=72	max_min_right_minus=51	max_min_right_plus=72	max_pos_hash_score=284	max_right=142	max_right_minus=142	max_right_plus=139	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.45	new_junction_read_count=68	polymorphism_frequency=1.000e+00	pos_hash_score=52	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=6	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=142	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=68
JC	908	.	Xen14_160	780	-1	Xen14_96	5300	-1	-25	alignment_overlap=-25	coverage_minus=28	coverage_plus=27	flanking_left=150	flanking_right=150	frequency=6.906e-01	junction_possible_overlap_registers=123	key=Xen14_160__780__-1__Xen14_96__5300__-1__-25__CTACACGGGAGAAATTCGATGTCGA__150__150__0__0	max_left=119	max_left_minus=98	max_left_plus=119	max_min_left=62	max_min_left_minus=62	max_min_left_plus=61	max_min_right=61	max_min_right_minus=61	max_min_right_plus=60	max_pos_hash_score=246	max_right=120	max_right_minus=120	max_right_plus=98	neg_log10_pos_hash_p_value=0.9	new_junction_coverage=0.57	new_junction_read_count=64	polymorphism_frequency=6.906e-01	pos_hash_score=38	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.57	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=69	side_2_redundant=0	total_non_overlap_reads=55	unique_read_sequence=CTACACGGGAGAAATTCGATGTCGA
JC	909	.	Xen14_161	1	1	Xen14_178	44	-1	-38	alignment_overlap=-38	coverage_minus=6	coverage_plus=4	flanking_left=150	flanking_right=44	frequency=4.890e-01	junction_possible_overlap_registers=110	key=Xen14_161__1__1__Xen14_178__44__-1__-38__GTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACG__150__44__0__0	max_left=109	max_left_minus=99	max_left_plus=109	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=28	max_min_right_minus=28	max_min_right_plus=28	max_pos_hash_score=220	max_right=28	max_right_minus=28	max_right_plus=28	neg_log10_pos_hash_p_value=4.1	new_junction_coverage=0.22	new_junction_read_count=16	polymorphism_frequency=4.890e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.45	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=45	side_2_redundant=0	total_non_overlap_reads=10	unique_read_sequence=GTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACG
JC	910	.	Xen14_162	691	1	Xen14_170	543	1	0	alignment_overlap=1	coverage_minus=5	coverage_plus=3	flanking_left=75	flanking_right=76	frequency=3.749e-01	junction_possible_overlap_registers=147	key=Xen14_162__690__1__Xen14_170__543__1__1____75__76__1__0	max_left=75	max_left_minus=71	max_left_plus=75	max_min_left=71	max_min_left_minus=71	max_min_left_plus=0	max_min_right=66	max_min_right_minus=0	max_min_right_plus=66	max_pos_hash_score=294	max_right=76	max_right_minus=76	max_right_plus=66	neg_log10_pos_hash_p_value=12.5	new_junction_coverage=0.23	new_junction_read_count=28	polymorphism_frequency=3.749e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.48	side_2_overlap=1	side_2_possible_overlap_registers=148	side_2_read_count=47	side_2_redundant=0	total_non_overlap_reads=8
JC	911	.	Xen14_163	1	1	Xen14_195	1	1	-10	alignment_overlap=-10	coverage_minus=117	coverage_plus=74	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=138	key=Xen14_163__1__1__Xen14_195__1__1__-10__TCCGCCGGTT__150__150__0__0	max_left=139	max_left_minus=139	max_left_plus=138	max_min_left=68	max_min_left_minus=68	max_min_left_plus=68	max_min_right=70	max_min_right_minus=70	max_min_right_plus=69	max_pos_hash_score=276	max_right=135	max_right_minus=135	max_right_plus=130	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.26	new_junction_read_count=200	polymorphism_frequency=1.000e+00	pos_hash_score=95	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=191	unique_read_sequence=TCCGCCGGTT
JC	912	.	Xen14_163	753	-1	Xen14_170	168	-1	0	alignment_overlap=1	coverage_minus=49	coverage_plus=44	flanking_left=150	flanking_right=150	frequency=6.738e-01	junction_possible_overlap_registers=147	key=Xen14_163__753__-1__Xen14_170__169__-1__1____150__150__0__0	max_left=147	max_left_minus=141	max_left_plus=147	max_min_left=72	max_min_left_minus=72	max_min_left_plus=66	max_min_right=67	max_min_right_minus=67	max_min_right_plus=67	max_pos_hash_score=294	max_right=139	max_right_minus=135	max_right_plus=139	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.54	new_junction_read_count=95	polymorphism_frequency=6.738e-01	pos_hash_score=52	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.95	side_2_overlap=0	side_2_possible_overlap_registers=147	side_2_read_count=92	side_2_redundant=0	total_non_overlap_reads=93
JC	913	.	Xen14_163	753	-1	Xen14_193	434	-1	0	alignment_overlap=10	coverage_minus=102	coverage_plus=77	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=138	key=Xen14_163__753__-1__Xen14_193__444__-1__10____150__150__0__0	max_left=134	max_left_minus=134	max_left_plus=130	max_min_left=67	max_min_left_minus=67	max_min_left_plus=67	max_min_right=69	max_min_right_minus=68	max_min_right_plus=69	max_pos_hash_score=276	max_right=139	max_right_minus=139	max_right_plus=138	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=0.76	new_junction_read_count=180	polymorphism_frequency=1.000e+00	pos_hash_score=98	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=10	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=138	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=179
JC	914	.	Xen14_166	103	1	Xen14_94	75	-1	0	alignment_overlap=0	coverage_minus=8	coverage_plus=7	flanking_left=150	flanking_right=75	frequency=7.209e-03	junction_possible_overlap_registers=148	key=Xen14_166__103__1__Xen14_94__75__-1__0____150__75__0__1	max_left=96	max_left_minus=96	max_left_plus=89	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=75	max_min_right_minus=75	max_min_right_plus=75	max_pos_hash_score=296	max_right=75	max_right_minus=75	max_right_plus=75	neg_log10_pos_hash_p_value=4.2	new_junction_coverage=0.01	new_junction_read_count=18	polymorphism_frequency=7.209e-03	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.06	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=2479	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=15
JC	915	.	Xen14_166	326	1	Xen14_94	75	-1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=8	flanking_left=150	flanking_right=75	frequency=7.703e-03	junction_possible_overlap_registers=148	key=Xen14_166__326__1__Xen14_94__75__-1__0____150__75__0__1	max_left=134	max_left_minus=134	max_left_plus=114	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=64	max_min_right_minus=16	max_min_right_plus=64	max_pos_hash_score=296	max_right=64	max_right_minus=16	max_right_plus=64	neg_log10_pos_hash_p_value=5.0	new_junction_coverage=0.01	new_junction_read_count=11	polymorphism_frequency=7.703e-03	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.60	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=1417	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=10
JC	916	.	Xen14_166	330	-1	Xen14_180	75	-1	0	alignment_overlap=0	coverage_minus=10	coverage_plus=10	flanking_left=150	flanking_right=75	frequency=1.441e-02	junction_possible_overlap_registers=148	key=Xen14_166__330__-1__Xen14_180__75__-1__0____150__75__0__1	max_left=103	max_left_minus=103	max_left_plus=102	max_min_left=64	max_min_left_minus=64	max_min_left_plus=0	max_min_right=73	max_min_right_minus=73	max_min_right_plus=70	max_pos_hash_score=296	max_right=73	max_right_minus=73	max_right_plus=70	neg_log10_pos_hash_p_value=2.0	new_junction_coverage=0.02	new_junction_read_count=20	polymorphism_frequency=1.441e-02	pos_hash_score=15	prediction=polymorphism	reject=FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.58	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=1368	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=20
JC	917	.	Xen14_166	330	-1	Xen14_38	48182	1	0	alignment_overlap=0	coverage_minus=44	coverage_plus=43	flanking_left=150	flanking_right=150	frequency=1.291e-01	junction_possible_overlap_registers=148	key=Xen14_166__330__-1__Xen14_38__48182__1__0____150__150__0__0	max_left=149	max_left_minus=144	max_left_plus=149	max_min_left=70	max_min_left_minus=70	max_min_left_plus=63	max_min_right=45	max_min_right_minus=44	max_min_right_plus=45	max_pos_hash_score=296	max_right=124	max_right_minus=122	max_right_plus=124	neg_log10_pos_hash_p_value=1.0	new_junction_coverage=0.09	new_junction_read_count=109	polymorphism_frequency=1.291e-01	pos_hash_score=48	prediction=polymorphism	reject=FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.58	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=1368	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=103	side_2_redundant=0	total_non_overlap_reads=87
JC	918	.	Xen14_166	403	1	Xen14_166	454	1	0	alignment_overlap=5	coverage_minus=6	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=3.810e-03	junction_possible_overlap_registers=143	key=Xen14_166__403__1__Xen14_166__449__1__5____150__150__0__0	max_left=61	max_left_minus=61	max_left_plus=19	max_min_left=61	max_min_left_minus=61	max_min_left_plus=19	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=286	max_right=126	max_right_minus=108	max_right_plus=126	neg_log10_pos_hash_p_value=5.2	new_junction_coverage=0.00	new_junction_read_count=7	polymorphism_frequency=3.810e-03	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.70	side_1_overlap=5	side_1_possible_overlap_registers=148	side_1_read_count=1634	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=143	side_2_read_count=2082	side_2_redundant=0	total_non_overlap_reads=7
JC	919	.	Xen14_166	453	1	Xen14_166	477	1	0	alignment_overlap=7	coverage_minus=3	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=1.820e-03	junction_possible_overlap_registers=141	key=Xen14_166__453__1__Xen14_166__470__1__7____150__150__0__0	max_left=39	max_left_minus=39	max_left_plus=29	max_min_left=39	max_min_left_minus=39	max_min_left_plus=29	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=282	max_right=121	max_right_minus=121	max_right_plus=72	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.00	new_junction_read_count=4	polymorphism_frequency=1.820e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.92	side_1_overlap=7	side_1_possible_overlap_registers=148	side_1_read_count=2146	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.05	side_2_overlap=0	side_2_possible_overlap_registers=141	side_2_read_count=2344	side_2_redundant=0	total_non_overlap_reads=4
JC	920	.	Xen14_166	668	-1	Xen14_17	79826	-1	-1	alignment_overlap=-1	coverage_minus=0	coverage_plus=6	flanking_left=150	flanking_right=150	frequency=1.423e-02	junction_possible_overlap_registers=147	key=Xen14_166__668__-1__Xen14_17__79826__-1__-1__G__150__150__0__0	max_left=120	max_left_minus=0	max_left_plus=120	max_min_left=43	max_min_left_minus=0	max_min_left_plus=43	max_min_right=71	max_min_right_minus=0	max_min_right_plus=71	max_pos_hash_score=294	max_right=143	max_right_minus=0	max_right_plus=143	neg_log10_pos_hash_p_value=4.8	new_junction_coverage=0.00	new_junction_read_count=6	polymorphism_frequency=1.423e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.14	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=333	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=3.03	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=504	side_2_redundant=0	total_non_overlap_reads=6	unique_read_sequence=G
JC	921	.	Xen14_166	669	-1	Xen14_17	79825	-1	-1	alignment_overlap=-1	coverage_minus=3	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=9.226e-03	junction_possible_overlap_registers=147	key=Xen14_166__669__-1__Xen14_17__79825__-1__-1__A__150__150__0__0	max_left=102	max_left_minus=102	max_left_plus=23	max_min_left=69	max_min_left_minus=69	max_min_left_plus=23	max_min_right=47	max_min_right_minus=47	max_min_right_plus=0	max_pos_hash_score=294	max_right=126	max_right_minus=93	max_right_plus=126	neg_log10_pos_hash_p_value=5.3	new_junction_coverage=0.00	new_junction_read_count=4	polymorphism_frequency=9.226e-03	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.14	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=318	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=3.29	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=547	side_2_redundant=0	total_non_overlap_reads=4	unique_read_sequence=A
JC	922	.	Xen14_166	670	-1	Xen14_17	79824	-1	-1	alignment_overlap=-1	coverage_minus=7	coverage_plus=5	flanking_left=150	flanking_right=150	frequency=2.629e-02	junction_possible_overlap_registers=147	key=Xen14_166__670__-1__Xen14_17__79824__-1__-1__T__150__150__0__0	max_left=141	max_left_minus=141	max_left_plus=118	max_min_left=63	max_min_left_minus=63	max_min_left_plus=51	max_min_right=62	max_min_right_minus=62	max_min_right_plus=55	max_pos_hash_score=294	max_right=113	max_right_minus=113	max_right_plus=112	neg_log10_pos_hash_p_value=4.2	new_junction_coverage=0.01	new_junction_read_count=12	polymorphism_frequency=2.629e-02	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.13	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=310	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=3.52	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=585	side_2_redundant=0	total_non_overlap_reads=12	unique_read_sequence=T
JC	923	.	Xen14_166	671	-1	Xen14_17	79823	-1	-1	alignment_overlap=-1	coverage_minus=2	coverage_plus=3	flanking_left=150	flanking_right=150	frequency=1.086e-02	junction_possible_overlap_registers=147	key=Xen14_166__671__-1__Xen14_17__79823__-1__-1__A__150__150__0__0	max_left=61	max_left_minus=61	max_left_plus=42	max_min_left=61	max_min_left_minus=61	max_min_left_plus=42	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=294	max_right=148	max_right_minus=99	max_right_plus=148	neg_log10_pos_hash_p_value=5.3	new_junction_coverage=0.00	new_junction_read_count=5	polymorphism_frequency=1.086e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.13	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=305	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=3.68	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=612	side_2_redundant=0	total_non_overlap_reads=5	unique_read_sequence=A
JC	924	.	Xen14_166	675	-1	Xen14_17	79819	-1	-1	alignment_overlap=-1	coverage_minus=4	coverage_plus=5	flanking_left=150	flanking_right=150	frequency=1.946e-02	junction_possible_overlap_registers=147	key=Xen14_166__675__-1__Xen14_17__79819__-1__-1__A__150__150__0__0	max_left=101	max_left_minus=101	max_left_plus=21	max_min_left=57	max_min_left_minus=57	max_min_left_plus=21	max_min_right=48	max_min_right_minus=48	max_min_right_plus=0	max_pos_hash_score=294	max_right=139	max_right_minus=92	max_right_plus=139	neg_log10_pos_hash_p_value=4.8	new_junction_coverage=0.01	new_junction_read_count=9	polymorphism_frequency=1.946e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.11	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=248	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=4.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=665	side_2_redundant=0	total_non_overlap_reads=9	unique_read_sequence=A
JC	925	.	Xen14_166	676	-1	Xen14_17	79818	-1	-1	alignment_overlap=-1	coverage_minus=7	coverage_plus=7	flanking_left=150	flanking_right=150	frequency=2.979e-02	junction_possible_overlap_registers=147	key=Xen14_166__676__-1__Xen14_17__79818__-1__-1__T__150__150__0__0	max_left=147	max_left_minus=147	max_left_plus=81	max_min_left=69	max_min_left_minus=69	max_min_left_plus=50	max_min_right=68	max_min_right_minus=27	max_min_right_plus=68	max_pos_hash_score=294	max_right=142	max_right_minus=125	max_right_plus=142	neg_log10_pos_hash_p_value=3.9	new_junction_coverage=0.01	new_junction_read_count=14	polymorphism_frequency=2.979e-02	pos_hash_score=12	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.10	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=224	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=4.18	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=694	side_2_redundant=0	total_non_overlap_reads=14	unique_read_sequence=T
JC	926	.	Xen14_166	677	-1	Xen14_17	79817	-1	-1	alignment_overlap=-1	coverage_minus=4	coverage_plus=3	flanking_left=150	flanking_right=150	frequency=1.688e-02	junction_possible_overlap_registers=147	key=Xen14_166__677__-1__Xen14_17__79817__-1__-1__C__150__150__0__0	max_left=135	max_left_minus=135	max_left_plus=109	max_min_left=48	max_min_left_minus=0	max_min_left_plus=48	max_min_right=60	max_min_right_minus=60	max_min_right_plus=40	max_pos_hash_score=294	max_right=101	max_right_minus=60	max_right_plus=101	neg_log10_pos_hash_p_value=5.0	new_junction_coverage=0.01	new_junction_read_count=8	polymorphism_frequency=1.688e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.09	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=217	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=4.34	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=721	side_2_redundant=0	total_non_overlap_reads=7	unique_read_sequence=C
JC	927	.	Xen14_166	685	-1	Xen14_17	79810	-1	0	alignment_overlap=26	coverage_minus=1632	coverage_plus=1154	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=122	key=Xen14_166__685__-1__Xen14_17__79836__-1__26____150__150__0__0	max_left=123	max_left_minus=123	max_left_plus=123	max_min_left=61	max_min_left_minus=61	max_min_left_plus=61	max_min_right=62	max_min_right_minus=62	max_min_right_plus=62	max_pos_hash_score=244	max_right=123	max_right_minus=123	max_right_plus=123	neg_log10_pos_hash_p_value=-0.0	new_junction_coverage=2.81	new_junction_read_count=2909	polymorphism_frequency=9.536e-01	pos_hash_score=238	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=26	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=2.07	side_2_overlap=0	side_2_possible_overlap_registers=122	side_2_read_count=283	side_2_redundant=0	total_non_overlap_reads=2786
JC	928	.	Xen14_168	1	1	Xen14_21	25	1	0	alignment_overlap=24	coverage_minus=18	coverage_plus=7	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=124	key=Xen14_168__1__1__Xen14_21__1__1__24____150__150__0__0	max_left=73	max_left_minus=73	max_left_plus=71	max_min_left=58	max_min_left_minus=58	max_min_left_plus=44	max_min_right=56	max_min_right_minus=56	max_min_right_plus=55	max_pos_hash_score=248	max_right=118	max_right_minus=101	max_right_plus=118	neg_log10_pos_hash_p_value=2.4	new_junction_coverage=0.05	new_junction_read_count=32	polymorphism_frequency=1.000e+00	pos_hash_score=15	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=24	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=124	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=25
JC	929	.	Xen14_168	1	1	Xen14_29	59	-1	-36	alignment_overlap=-36	coverage_minus=37	coverage_plus=41	flanking_left=150	flanking_right=59	frequency=1	junction_possible_overlap_registers=112	key=Xen14_168__1__1__Xen14_29__59__-1__-36__TCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCC__150__59__0__1	max_left=112	max_left_minus=112	max_left_plus=108	max_min_left=55	max_min_left_minus=55	max_min_left_plus=0	max_min_right=57	max_min_right_minus=46	max_min_right_plus=57	max_pos_hash_score=224	max_right=59	max_right_minus=59	max_right_plus=57	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=0.15	new_junction_read_count=83	polymorphism_frequency=1.000e+00	pos_hash_score=43	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=78	unique_read_sequence=TCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCC
JC	930	.	Xen14_168	1	1	Xen14_31	27	1	0	alignment_overlap=26	coverage_minus=211	coverage_plus=204	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=122	key=Xen14_168__1__1__Xen14_31__1__1__26____150__150__0__0	max_left=123	max_left_minus=123	max_left_plus=123	max_min_left=59	max_min_left_minus=59	max_min_left_plus=59	max_min_right=58	max_min_right_minus=54	max_min_right_plus=58	max_pos_hash_score=244	max_right=123	max_right_minus=122	max_right_plus=123	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=0.66	new_junction_read_count=424	polymorphism_frequency=1.000e+00	pos_hash_score=135	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=26	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=122	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=415
JC	931	.	Xen14_168	1	1	Xen14_46	40324	-1	0	alignment_overlap=27	coverage_minus=17	coverage_plus=21	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=121	key=Xen14_168__1__1__Xen14_46__40351__-1__27____150__150__0__0	max_left=70	max_left_minus=68	max_left_plus=70	max_min_left=61	max_min_left_minus=61	max_min_left_plus=52	max_min_right=59	max_min_right_minus=55	max_min_right_plus=59	max_pos_hash_score=242	max_right=122	max_right_minus=110	max_right_plus=122	neg_log10_pos_hash_p_value=2.9	new_junction_coverage=0.06	new_junction_read_count=38	polymorphism_frequency=1.000e+00	pos_hash_score=26	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=27	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=121	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=38
JC	932	.	Xen14_168	1	1	Xen14_67	28	1	0	alignment_overlap=27	coverage_minus=27	coverage_plus=19	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=121	key=Xen14_168__1__1__Xen14_67__1__1__27____150__150__0__0	max_left=71	max_left_minus=71	max_left_plus=71	max_min_left=60	max_min_left_minus=60	max_min_left_plus=58	max_min_right=56	max_min_right_minus=52	max_min_right_plus=56	max_pos_hash_score=242	max_right=122	max_right_minus=122	max_right_plus=95	neg_log10_pos_hash_p_value=1.9	new_junction_coverage=0.08	new_junction_read_count=46	polymorphism_frequency=1.000e+00	pos_hash_score=28	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=27	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=121	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=46
JC	933	.	Xen14_168	1	1	Xen14_68	27	1	0	alignment_overlap=26	coverage_minus=40	coverage_plus=27	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=122	key=Xen14_168__1__1__Xen14_68__1__1__26____150__150__0__0	max_left=73	max_left_minus=73	max_left_plus=73	max_min_left=58	max_min_left_minus=58	max_min_left_plus=39	max_min_right=62	max_min_right_minus=61	max_min_right_plus=62	max_pos_hash_score=244	max_right=121	max_right_minus=121	max_right_plus=118	neg_log10_pos_hash_p_value=4.1	new_junction_coverage=0.11	new_junction_read_count=68	polymorphism_frequency=1.000e+00	pos_hash_score=37	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=26	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=122	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=67
JC	934	.	Xen14_168	1	1	Xen14_80	26	1	0	alignment_overlap=25	coverage_minus=27	coverage_plus=34	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=123	key=Xen14_168__1__1__Xen14_80__1__1__25____150__150__0__0	max_left=72	max_left_minus=72	max_left_plus=69	max_min_left=60	max_min_left_minus=60	max_min_left_plus=56	max_min_right=58	max_min_right_minus=56	max_min_right_plus=58	max_pos_hash_score=246	max_right=122	max_right_minus=122	max_right_plus=122	neg_log10_pos_hash_p_value=2.1	new_junction_coverage=0.10	new_junction_read_count=61	polymorphism_frequency=1.000e+00	pos_hash_score=37	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=25	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=123	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=61
JC	935	.	Xen14_168	296	1	Xen14_190	374	1	0	alignment_overlap=0	coverage_minus=37	coverage_plus=37	flanking_left=150	flanking_right=75	frequency=5.549e-02	junction_possible_overlap_registers=148	key=Xen14_168__296__1__Xen14_190__374__1__0____150__75__0__1	max_left=149	max_left_minus=147	max_left_plus=149	max_min_left=74	max_min_left_minus=74	max_min_left_plus=0	max_min_right=74	max_min_right_minus=74	max_min_right_plus=74	max_pos_hash_score=296	max_right=75	max_right_minus=75	max_right_plus=74	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=0.13	new_junction_read_count=91	polymorphism_frequency=5.549e-02	pos_hash_score=48	prediction=polymorphism	reject=FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.12	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=1549	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=74
JC	936	.	Xen14_168	298	-1	Xen14_47	36191	1	0	alignment_overlap=0	coverage_minus=6	coverage_plus=4	flanking_left=150	flanking_right=84	frequency=2.482e-02	junction_possible_overlap_registers=148	key=Xen14_168__298__-1__Xen14_47__36191__1__0____150__84__0__0	max_left=70	max_left_minus=70	max_left_plus=70	max_min_left=70	max_min_left_minus=70	max_min_left_plus=70	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=296	max_right=84	max_right_minus=84	max_right_plus=84	neg_log10_pos_hash_p_value=13.5	new_junction_coverage=0.03	new_junction_read_count=21	polymorphism_frequency=2.482e-02	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.14	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=1569	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.59	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=81	side_2_redundant=0	total_non_overlap_reads=10
JC	937	.	Xen14_168	298	-1	Xen14_94	7510	1	0	alignment_overlap=0	coverage_minus=59	coverage_plus=32	flanking_left=150	flanking_right=75	frequency=5.539e-02	junction_possible_overlap_registers=148	key=Xen14_168__298__-1__Xen14_94__7510__1__0____150__75__0__1	max_left=146	max_left_minus=146	max_left_plus=145	max_min_left=73	max_min_left_minus=73	max_min_left_plus=0	max_min_right=75	max_min_right_minus=75	max_min_right_plus=75	max_pos_hash_score=296	max_right=75	max_right_minus=75	max_right_plus=75	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=0.13	new_junction_read_count=92	polymorphism_frequency=5.539e-02	pos_hash_score=55	prediction=polymorphism	reject=FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.14	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=1569	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=91
JC	938	.	Xen14_168	629	-1	Xen14_2	63	1	0	alignment_overlap=62	coverage_minus=6	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=86	key=Xen14_168__629__-1__Xen14_2__1__1__62____150__150__0__0	max_left=43	max_left_minus=43	max_left_plus=34	max_min_left=43	max_min_left_minus=43	max_min_left_plus=34	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=172	max_right=76	max_right_minus=76	max_right_plus=70	neg_log10_pos_hash_p_value=3.3	new_junction_coverage=0.02	new_junction_read_count=9	polymorphism_frequency=1.000e+00	pos_hash_score=7	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=62	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=86	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=8
JC	939	.	Xen14_168	629	-1	Xen14_22	74419	-1	0	alignment_overlap=38	coverage_minus=29	coverage_plus=24	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=110	key=Xen14_168__629__-1__Xen14_22__74457__-1__38____150__150__0__0	max_left=70	max_left_minus=67	max_left_plus=70	max_min_left=55	max_min_left_minus=55	max_min_left_plus=53	max_min_right=55	max_min_right_minus=55	max_min_right_plus=42	max_pos_hash_score=220	max_right=110	max_right_minus=102	max_right_plus=110	neg_log10_pos_hash_p_value=3.4	new_junction_coverage=0.09	new_junction_read_count=53	polymorphism_frequency=1.000e+00	pos_hash_score=35	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=38	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=110	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=53
JC	940	.	Xen14_168	629	-1	Xen14_29	59	-1	-15	alignment_overlap=-15	coverage_minus=18	coverage_plus=44	flanking_left=150	flanking_right=59	frequency=1	junction_possible_overlap_registers=133	key=Xen14_168__629__-1__Xen14_29__59__-1__-15__ACCCCCAGCCTAGCT__150__59__0__0	max_left=133	max_left_minus=131	max_left_plus=133	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=58	max_min_right_minus=58	max_min_right_plus=56	max_pos_hash_score=266	max_right=58	max_right_minus=58	max_right_plus=56	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=0.10	new_junction_read_count=62	polymorphism_frequency=9.020e-01	pos_hash_score=43	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.28	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=15	side_2_redundant=0	total_non_overlap_reads=62	unique_read_sequence=ACCCCCAGCCTAGCT
JC	941	.	Xen14_168	629	-1	Xen14_5	41	1	0	alignment_overlap=40	coverage_minus=9	coverage_plus=16	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=108	key=Xen14_168__629__-1__Xen14_5__1__1__40____150__150__0__0	max_left=69	max_left_minus=65	max_left_plus=69	max_min_left=54	max_min_left_minus=54	max_min_left_plus=52	max_min_right=43	max_min_right_minus=43	max_min_right_plus=41	max_pos_hash_score=216	max_right=104	max_right_minus=104	max_right_plus=104	neg_log10_pos_hash_p_value=3.0	new_junction_coverage=0.05	new_junction_read_count=25	polymorphism_frequency=1.000e+00	pos_hash_score=19	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=40	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=108	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=25
JC	942	.	Xen14_168	629	-1	Xen14_58	39	1	0	alignment_overlap=38	coverage_minus=23	coverage_plus=20	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=110	key=Xen14_168__629__-1__Xen14_58__1__1__38____150__150__0__0	max_left=69	max_left_minus=69	max_left_plus=68	max_min_left=53	max_min_left_minus=53	max_min_left_plus=50	max_min_right=56	max_min_right_minus=56	max_min_right_plus=54	max_pos_hash_score=220	max_right=110	max_right_minus=106	max_right_plus=110	neg_log10_pos_hash_p_value=2.7	new_junction_coverage=0.08	new_junction_read_count=43	polymorphism_frequency=1.000e+00	pos_hash_score=31	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=38	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=110	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=43
JC	943	.	Xen14_168	629	-1	Xen14_62	44	1	0	alignment_overlap=43	coverage_minus=18	coverage_plus=15	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=105	key=Xen14_168__629__-1__Xen14_62__1__1__43____150__150__0__0	max_left=72	max_left_minus=72	max_left_plus=69	max_min_left=52	max_min_left_minus=52	max_min_left_plus=50	max_min_right=46	max_min_right_minus=46	max_min_right_plus=46	max_pos_hash_score=210	max_right=103	max_right_minus=103	max_right_plus=82	neg_log10_pos_hash_p_value=0.8	new_junction_coverage=0.06	new_junction_read_count=33	polymorphism_frequency=1.000e+00	pos_hash_score=22	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=43	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=105	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=33
JC	944	.	Xen14_168	629	-1	Xen14_68	16345	-1	0	alignment_overlap=37	coverage_minus=118	coverage_plus=160	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=111	key=Xen14_168__629__-1__Xen14_68__16382__-1__37____150__150__0__0	max_left=111	max_left_minus=111	max_left_plus=111	max_min_left=54	max_min_left_minus=52	max_min_left_plus=54	max_min_right=56	max_min_right_minus=54	max_min_right_plus=56	max_pos_hash_score=222	max_right=110	max_right_minus=105	max_right_plus=110	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=0.51	new_junction_read_count=297	polymorphism_frequency=1.000e+00	pos_hash_score=96	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=37	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=111	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=278
JC	945	.	Xen14_168	629	-1	Xen14_78	12516	-1	0	alignment_overlap=43	coverage_minus=35	coverage_plus=20	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=105	key=Xen14_168__629__-1__Xen14_78__12559__-1__43____150__150__0__0	max_left=71	max_left_minus=66	max_left_plus=71	max_min_left=53	max_min_left_minus=53	max_min_left_plus=43	max_min_right=53	max_min_right_minus=53	max_min_right_plus=52	max_pos_hash_score=210	max_right=103	max_right_minus=103	max_right_plus=100	neg_log10_pos_hash_p_value=4.3	new_junction_coverage=0.10	new_junction_read_count=55	polymorphism_frequency=1.000e+00	pos_hash_score=32	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=43	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=105	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=55
JC	946	.	Xen14_169	1	1	Xen14_193	444	-1	-24	alignment_overlap=-24	coverage_minus=61	coverage_plus=29	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=124	key=Xen14_169__1__1__Xen14_193__444__-1__-24__AATACGGTTCTGACGAGCCGCTTA__150__150__0__0	max_left=121	max_left_minus=121	max_left_plus=102	max_min_left=58	max_min_left_minus=58	max_min_left_plus=48	max_min_right=62	max_min_right_minus=62	max_min_right_plus=62	max_pos_hash_score=248	max_right=123	max_right_minus=119	max_right_plus=123	neg_log10_pos_hash_p_value=5.9	new_junction_coverage=0.50	new_junction_read_count=91	polymorphism_frequency=1.000e+00	pos_hash_score=46	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=90	unique_read_sequence=AATACGGTTCTGACGAGCCGCTTA
JC	947	.	Xen14_169	1	1	Xen14_82	11932	-1	0	alignment_overlap=51	coverage_minus=44	coverage_plus=40	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=97	key=Xen14_169__1__1__Xen14_82__11983__-1__51____150__150__0__0	max_left=97	max_left_minus=97	max_left_plus=96	max_min_left=48	max_min_left_minus=44	max_min_left_plus=48	max_min_right=48	max_min_right_minus=48	max_min_right_plus=47	max_pos_hash_score=194	max_right=96	max_right_minus=88	max_right_plus=96	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=0.89	new_junction_read_count=84	polymorphism_frequency=1.000e+00	pos_hash_score=53	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=51	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=97	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=84
JC	948	.	Xen14_17	79832	1	Xen14_17	79836	-1	-7	alignment_overlap=-7	coverage_minus=0	coverage_plus=3	flanking_left=150	flanking_right=150	frequency=8.240e-03	junction_possible_overlap_registers=141	key=Xen14_17__79832__1__Xen14_17__79836__-1__-7__AAGGCGT__150__150__0__0	max_left=68	max_left_minus=0	max_left_plus=68	max_min_left=22	max_min_left_minus=0	max_min_left_plus=22	max_min_right=63	max_min_right_minus=0	max_min_right_plus=63	max_pos_hash_score=282	max_right=121	max_right_minus=0	max_right_plus=121	neg_log10_pos_hash_p_value=17.3	new_junction_coverage=0.02	new_junction_read_count=3	polymorphism_frequency=8.240e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=2.59	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=431	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.97	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=327	side_2_redundant=0	total_non_overlap_reads=3	unique_read_sequence=AAGGCGT
JC	949	.	Xen14_171	1	1	Xen14_64	2419	-1	0	alignment_overlap=1	coverage_minus=43	coverage_plus=30	flanking_left=150	flanking_right=150	frequency=6.759e-01	junction_possible_overlap_registers=147	key=Xen14_171__1__1__Xen14_64__2420__-1__1____150__150__0__0	max_left=146	max_left_minus=146	max_left_plus=145	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=61	max_min_right_minus=61	max_min_right_plus=61	max_pos_hash_score=294	max_right=61	max_right_minus=61	max_right_plus=61	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.81	new_junction_read_count=73	polymorphism_frequency=6.759e-01	pos_hash_score=40	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.09	side_2_overlap=0	side_2_possible_overlap_registers=147	side_2_read_count=70	side_2_redundant=0	total_non_overlap_reads=73
JC	950	.	Xen14_172	1	1	Xen14_64	2419	-1	0	alignment_overlap=1	coverage_minus=5	coverage_plus=14	flanking_left=150	flanking_right=150	frequency=3.636e-01	junction_possible_overlap_registers=147	key=Xen14_172__1__1__Xen14_64__2420__-1__1____150__150__0__0	max_left=145	max_left_minus=145	max_left_plus=136	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=58	max_min_right_minus=58	max_min_right_plus=53	max_pos_hash_score=294	max_right=58	max_right_minus=58	max_right_plus=53	neg_log10_pos_hash_p_value=1.5	new_junction_coverage=0.37	new_junction_read_count=20	polymorphism_frequency=3.636e-01	pos_hash_score=13	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.09	side_2_overlap=0	side_2_possible_overlap_registers=147	side_2_read_count=70	side_2_redundant=0	total_non_overlap_reads=19
JC	951	.	Xen14_174	1	1	Xen14_96	5121	1	-29	alignment_overlap=-29	coverage_minus=24	coverage_plus=18	flanking_left=150	flanking_right=150	frequency=7.047e-01	junction_possible_overlap_registers=119	key=Xen14_174__1__1__Xen14_96__5121__1__-29__TTGCCCGGCCAGTACGATGACGTAGTACC__150__150__0__0	max_left=116	max_left_minus=116	max_left_plus=113	max_min_left=53	max_min_left_minus=48	max_min_left_plus=53	max_min_right=53	max_min_right_minus=41	max_min_right_plus=53	max_pos_hash_score=238	max_right=119	max_right_minus=118	max_right_plus=119	neg_log10_pos_hash_p_value=1.6	new_junction_coverage=0.74	new_junction_read_count=71	polymorphism_frequency=7.047e-01	pos_hash_score=33	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.61	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=74	side_2_redundant=0	total_non_overlap_reads=42	unique_read_sequence=TTGCCCGGCCAGTACGATGACGTAGTACC
JC	952	.	Xen14_174	35	-1	Xen14_96	5128	-1	0	alignment_overlap=0	coverage_minus=17	coverage_plus=7	flanking_left=35	flanking_right=150	frequency=3.434e-01	junction_possible_overlap_registers=148	key=Xen14_174__35__-1__Xen14_96__5128__-1__0____35__150__1__0	max_left=35	max_left_minus=34	max_left_plus=35	max_min_left=35	max_min_left_minus=34	max_min_left_plus=35	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=296	max_right=148	max_right_minus=144	max_right_plus=148	neg_log10_pos_hash_p_value=6.3	new_junction_coverage=0.28	new_junction_read_count=34	polymorphism_frequency=3.434e-01	pos_hash_score=14	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.54	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=65	side_2_redundant=0	total_non_overlap_reads=24
JC	953	.	Xen14_175	92	-1	Xen14_204	1	1	-39	alignment_overlap=-39	coverage_minus=8	coverage_plus=15	flanking_left=92	flanking_right=150	frequency=4.715e-01	junction_possible_overlap_registers=109	key=Xen14_175__92__-1__Xen14_204__1__1__-39__CGCGGTGGCCAGTTTTTGTTGACCACTTCACCCAGCAAT__92__150__0__0	max_left=18	max_left_minus=18	max_left_plus=18	max_min_left=18	max_min_left_minus=18	max_min_left_plus=18	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=218	max_right=110	max_right_minus=105	max_right_plus=110	neg_log10_pos_hash_p_value=3.3	new_junction_coverage=0.35	new_junction_read_count=23	polymorphism_frequency=4.715e-01	pos_hash_score=16	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.92	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=70	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=23	unique_read_sequence=CGCGGTGGCCAGTTTTTGTTGACCACTTCACCCAGCAAT
JC	954	.	Xen14_175	123	-1	Xen14_204	1	1	-8	alignment_overlap=-8	coverage_minus=8	coverage_plus=2	flanking_left=123	flanking_right=150	frequency=1.955e-01	junction_possible_overlap_registers=140	key=Xen14_175__123__-1__Xen14_204__1__1__-8__CCAGCAAT__123__150__0__0	max_left=3	max_left_minus=2	max_left_plus=3	max_min_left=3	max_min_left_minus=2	max_min_left_plus=3	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=280	max_right=141	max_right_minus=141	max_right_plus=141	neg_log10_pos_hash_p_value=11.8	new_junction_coverage=0.12	new_junction_read_count=10	polymorphism_frequency=1.955e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.14	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=87	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=10	unique_read_sequence=CCAGCAAT
JC	955	.	Xen14_175	560	-1	Xen14_183	245	1	0	alignment_overlap=10	coverage_minus=16	coverage_plus=7	flanking_left=150	flanking_right=150	frequency=3.743e-01	junction_possible_overlap_registers=138	key=Xen14_175__560__-1__Xen14_183__235__1__10____150__150__0__0	max_left=139	max_left_minus=137	max_left_plus=139	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=51	max_min_right_minus=51	max_min_right_plus=32	max_pos_hash_score=276	max_right=51	max_right_minus=51	max_right_plus=32	neg_log10_pos_hash_p_value=4.4	new_junction_coverage=0.35	new_junction_read_count=32	polymorphism_frequency=3.743e-01	pos_hash_score=18	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=10	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.97	side_2_overlap=0	side_2_possible_overlap_registers=138	side_2_read_count=107	side_2_redundant=0	total_non_overlap_reads=23
JC	956	.	Xen14_176	1	1	Xen14_88	2196	-1	0	alignment_overlap=1	coverage_minus=6	coverage_plus=12	flanking_left=150	flanking_right=150	frequency=3.802e-01	junction_possible_overlap_registers=147	key=Xen14_176__1__1__Xen14_88__2197__-1__1____150__150__0__0	max_left=148	max_left_minus=147	max_left_plus=148	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=7	max_min_right_minus=7	max_min_right_plus=6	max_pos_hash_score=294	max_right=7	max_right_minus=7	max_right_plus=6	neg_log10_pos_hash_p_value=6.4	new_junction_coverage=0.20	new_junction_read_count=23	polymorphism_frequency=3.802e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.04	side_2_overlap=0	side_2_possible_overlap_registers=147	side_2_read_count=75	side_2_redundant=0	total_non_overlap_reads=18
JC	957	.	Xen14_177	1	1	Xen14_96	5308	-1	-24	alignment_overlap=-24	coverage_minus=24	coverage_plus=23	flanking_left=150	flanking_right=150	frequency=6.842e-01	junction_possible_overlap_registers=124	key=Xen14_177__1__1__Xen14_96__5308__-1__-24__CATTTTTCAGATGGTGGAAAGAAC__150__150__0__0	max_left=125	max_left_minus=125	max_left_plus=123	max_min_left=62	max_min_left_minus=60	max_min_left_plus=62	max_min_right=62	max_min_right_minus=59	max_min_right_plus=62	max_pos_hash_score=248	max_right=93	max_right_minus=93	max_right_plus=91	neg_log10_pos_hash_p_value=1.3	new_junction_coverage=0.52	new_junction_read_count=59	polymorphism_frequency=6.842e-01	pos_hash_score=34	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.54	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=65	side_2_redundant=0	total_non_overlap_reads=47	unique_read_sequence=CATTTTTCAGATGGTGGAAAGAAC
JC	958	.	Xen14_177	1	1	Xen14_96	5308	-1	-24	alignment_overlap=-24	coverage_minus=35	coverage_plus=29	flanking_left=150	flanking_right=150	frequency=7.170e-01	junction_possible_overlap_registers=124	key=Xen14_177__1__1__Xen14_96__5308__-1__-24__TATTTTTCAGATGGTGGAAAGAAC__150__150__0__0	max_left=123	max_left_minus=123	max_left_plus=121	max_min_left=62	max_min_left_minus=62	max_min_left_plus=56	max_min_right=63	max_min_right_minus=63	max_min_right_plus=63	max_pos_hash_score=248	max_right=93	max_right_minus=93	max_right_plus=92	neg_log10_pos_hash_p_value=1.1	new_junction_coverage=0.61	new_junction_read_count=69	polymorphism_frequency=7.170e-01	pos_hash_score=37	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.54	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=65	side_2_redundant=0	total_non_overlap_reads=64	unique_read_sequence=TATTTTTCAGATGGTGGAAAGAAC
JC	959	.	Xen14_177	549	-1	Xen14_96	5541	1	-57	alignment_overlap=-57	coverage_minus=22	coverage_plus=17	flanking_left=150	flanking_right=150	frequency=6.826e-01	junction_possible_overlap_registers=91	key=Xen14_177__549__-1__Xen14_96__5541__1__-57__ACTAAAACAACAAAGTCCATAAGGAGTTTACTCACATCTGACAAAATCAATATAAAC__150__150__0__0	max_left=87	max_left_minus=87	max_left_plus=75	max_min_left=45	max_min_left_minus=45	max_min_left_plus=27	max_min_right=44	max_min_right_minus=44	max_min_right_plus=32	max_pos_hash_score=182	max_right=92	max_right_minus=92	max_right_plus=89	neg_log10_pos_hash_p_value=1.1	new_junction_coverage=0.47	new_junction_read_count=39	polymorphism_frequency=6.826e-01	pos_hash_score=26	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.49	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=59	side_2_redundant=0	total_non_overlap_reads=39	unique_read_sequence=ACTAAAACAACAAAGTCCATAAGGAGTTTACTCACATCTGACAAAATCAATATAAAC
JC	960	.	Xen14_177	549	-1	Xen14_96	5541	1	-57	alignment_overlap=-57	coverage_minus=11	coverage_plus=12	flanking_left=150	flanking_right=150	frequency=5.591e-01	junction_possible_overlap_registers=91	key=Xen14_177__549__-1__Xen14_96__5541__1__-57__GCTAAAACAACAAAGTCCATAAGGAGTTTACTCACATCTGACAAAATCAATATAAAC__150__150__0__0	max_left=80	max_left_minus=80	max_left_plus=77	max_min_left=46	max_min_left_minus=44	max_min_left_plus=46	max_min_right=45	max_min_right_minus=45	max_min_right_plus=24	max_pos_hash_score=182	max_right=92	max_right_minus=92	max_right_plus=78	neg_log10_pos_hash_p_value=2.1	new_junction_coverage=0.28	new_junction_read_count=23	polymorphism_frequency=5.591e-01	pos_hash_score=17	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.49	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=59	side_2_redundant=0	total_non_overlap_reads=23	unique_read_sequence=GCTAAAACAACAAAGTCCATAAGGAGTTTACTCACATCTGACAAAATCAATATAAAC
JC	961	.	Xen14_178	401	1	Xen14_191	128	1	-18	alignment_overlap=-18	coverage_minus=4	coverage_plus=7	flanking_left=141	flanking_right=150	frequency=1.752e-01	junction_possible_overlap_registers=130	key=Xen14_178__401__1__Xen14_191__128__1__-18__TTAGCCAGAGCCTGCAAC__141__150__0__0	max_left=9	max_left_minus=8	max_left_plus=9	max_min_left=9	max_min_left_minus=8	max_min_left_plus=9	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=260	max_right=131	max_right_minus=131	max_right_plus=131	neg_log10_pos_hash_p_value=5.4	new_junction_coverage=0.10	new_junction_read_count=18	polymorphism_frequency=1.752e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.13	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=113	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.25	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=80	side_2_redundant=0	total_non_overlap_reads=11	unique_read_sequence=TTAGCCAGAGCCTGCAAC
JC	962	.	Xen14_180	75	-1	Xen14_202	280	-1	0	alignment_overlap=0	coverage_minus=20	coverage_plus=53	flanking_left=75	flanking_right=150	frequency=1.060e-01	junction_possible_overlap_registers=148	key=Xen14_180__75__-1__Xen14_202__280__-1__0____75__150__1__0	max_left=75	max_left_minus=71	max_left_plus=75	max_min_left=74	max_min_left_minus=71	max_min_left_plus=74	max_min_right=75	max_min_right_minus=0	max_min_right_plus=75	max_pos_hash_score=296	max_right=145	max_right_minus=145	max_right_plus=144	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.28	new_junction_read_count=88	polymorphism_frequency=1.060e-01	pos_hash_score=44	prediction=polymorphism	reject=FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.35	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=742	side_2_redundant=0	total_non_overlap_reads=73
JC	963	.	Xen14_180	75	-1	Xen14_62	81	-1	-39	alignment_overlap=-39	coverage_minus=4	coverage_plus=0	flanking_left=75	flanking_right=81	frequency=4.044e-01	junction_possible_overlap_registers=109	key=Xen14_180__75__-1__Xen14_62__81__-1__-39__TTTGCGCCCGGATCAGGCCGCAGGGGGAAACTCTGCGGC__75__81__1__0	max_left=30	max_left_minus=30	max_left_plus=0	max_min_left=30	max_min_left_minus=30	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=218	max_right=81	max_right_minus=81	max_right_plus=0	neg_log10_pos_hash_p_value=3.9	new_junction_coverage=0.15	new_junction_read_count=8	polymorphism_frequency=4.044e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.27	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=16	side_2_redundant=0	total_non_overlap_reads=4	unique_read_sequence=TTTGCGCCCGGATCAGGCCGCAGGGGGAAACTCTGCGGC
JC	964	.	Xen14_180	75	-1	Xen14_68	16309	1	-40	alignment_overlap=-40	coverage_minus=10	coverage_plus=27	flanking_left=75	flanking_right=74	frequency=NA	junction_possible_overlap_registers=108	key=Xen14_180__75__-1__Xen14_68__16309__1__-40__TTTGCGCCCGGATCAGGCCGCAGGGGGAAACTCTGCGGCC__75__74__1__1	max_left=75	max_left_minus=68	max_left_plus=75	max_min_left=52	max_min_left_minus=45	max_min_left_plus=52	max_min_right=54	max_min_right_minus=52	max_min_right_plus=54	max_pos_hash_score=216	max_right=74	max_right_minus=74	max_right_plus=74	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.44	new_junction_read_count=40	polymorphism_frequency=NA	pos_hash_score=23	prediction=unknown	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=37	unique_read_sequence=TTTGCGCCCGGATCAGGCCGCAGGGGGAAACTCTGCGGCC
JC	965	.	Xen14_180	75	-1	Xen14_78	12478	1	-38	alignment_overlap=-38	coverage_minus=4	coverage_plus=0	flanking_left=75	flanking_right=82	frequency=1.124e-01	junction_possible_overlap_registers=110	key=Xen14_180__75__-1__Xen14_78__12478__1__-38__TTTGCGCCCGGATCAGGCCGCAGGGGGAAACTCTGCGG__75__82__1__0	max_left=30	max_left_minus=30	max_left_plus=0	max_min_left=30	max_min_left_minus=30	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=220	max_right=82	max_right_minus=82	max_right_plus=0	neg_log10_pos_hash_p_value=4.0	new_junction_coverage=0.08	new_junction_read_count=8	polymorphism_frequency=1.124e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.49	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=85	side_2_redundant=0	total_non_overlap_reads=4	unique_read_sequence=TTTGCGCCCGGATCAGGCCGCAGGGGGAAACTCTGCGG
JC	966	.	Xen14_180	526	-1	Xen14_197	402	-1	0	alignment_overlap=31	coverage_minus=36	coverage_plus=24	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=117	key=Xen14_180__526__-1__Xen14_197__433__-1__31____150__150__0__0	max_left=113	max_left_minus=110	max_left_plus=113	max_min_left=54	max_min_left_minus=54	max_min_left_plus=46	max_min_right=54	max_min_right_minus=53	max_min_right_plus=54	max_pos_hash_score=234	max_right=114	max_right_minus=113	max_right_plus=114	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.95	new_junction_read_count=61	polymorphism_frequency=1.000e+00	pos_hash_score=40	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=31	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=117	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=60
JC	967	.	Xen14_183	235	1	Xen14_98	11	1	0	alignment_overlap=10	coverage_minus=14	coverage_plus=25	flanking_left=150	flanking_right=150	frequency=4.577e-01	junction_possible_overlap_registers=138	key=Xen14_183__235__1__Xen14_98__1__1__10____150__150__0__0	max_left=62	max_left_minus=62	max_left_plus=52	max_min_left=62	max_min_left_minus=62	max_min_left_plus=52	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=276	max_right=139	max_right_minus=138	max_right_plus=139	neg_log10_pos_hash_p_value=3.0	new_junction_coverage=0.39	new_junction_read_count=48	polymorphism_frequency=4.577e-01	pos_hash_score=32	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.03	side_1_overlap=10	side_1_possible_overlap_registers=148	side_1_read_count=122	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=138	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=39
JC	968	.	Xen14_183	477	-1	Xen14_75	12904	1	-11	alignment_overlap=-11	coverage_minus=40	coverage_plus=29	flanking_left=150	flanking_right=149	frequency=5.983e-01	junction_possible_overlap_registers=137	key=Xen14_183__477__-1__Xen14_75__12904__1__-11__GGTGCCGATCA__150__149__0__0	max_left=138	max_left_minus=135	max_left_plus=138	max_min_left=39	max_min_left_minus=39	max_min_left_plus=25	max_min_right=55	max_min_right_minus=54	max_min_right_plus=55	max_pos_hash_score=274	max_right=114	max_right_minus=100	max_right_plus=114	neg_log10_pos_hash_p_value=1.5	new_junction_coverage=0.72	new_junction_read_count=71	polymorphism_frequency=5.983e-01	pos_hash_score=36	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.10	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=103	side_2_redundant=0	total_non_overlap_reads=69	unique_read_sequence=GGTGCCGATCA
JC	969	.	Xen14_184	473	-1	Xen14_34	53052	-1	0	alignment_overlap=32	coverage_minus=85	coverage_plus=172	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=116	key=Xen14_184__473__-1__Xen14_34__53084__-1__32____150__150__0__0	max_left=117	max_left_minus=112	max_left_plus=117	max_min_left=57	max_min_left_minus=52	max_min_left_plus=57	max_min_right=54	max_min_right_minus=54	max_min_right_plus=54	max_pos_hash_score=232	max_right=114	max_right_minus=112	max_right_plus=114	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=0.61	new_junction_read_count=259	polymorphism_frequency=1.000e+00	pos_hash_score=102	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=32	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=116	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=257
JC	970	.	Xen14_184	473	-1	Xen14_58	24540	-1	0	alignment_overlap=32	coverage_minus=26	coverage_plus=34	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=116	key=Xen14_184__473__-1__Xen14_58__24572__-1__32____150__150__0__0	max_left=72	max_left_minus=69	max_left_plus=72	max_min_left=54	max_min_left_minus=36	max_min_left_plus=54	max_min_right=58	max_min_right_minus=57	max_min_right_plus=58	max_pos_hash_score=232	max_right=115	max_right_minus=112	max_right_plus=115	neg_log10_pos_hash_p_value=2.4	new_junction_coverage=0.14	new_junction_read_count=60	polymorphism_frequency=1.000e+00	pos_hash_score=35	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=32	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=116	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=60
JC	971	.	Xen14_184	473	-1	Xen14_60	32	1	0	alignment_overlap=31	coverage_minus=16	coverage_plus=24	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=117	key=Xen14_184__473__-1__Xen14_60__1__1__31____150__150__0__0	max_left=70	max_left_minus=67	max_left_plus=70	max_min_left=58	max_min_left_minus=51	max_min_left_plus=58	max_min_right=58	max_min_right_minus=58	max_min_right_plus=55	max_pos_hash_score=234	max_right=116	max_right_minus=115	max_right_plus=116	neg_log10_pos_hash_p_value=1.8	new_junction_coverage=0.10	new_junction_read_count=40	polymorphism_frequency=1.000e+00	pos_hash_score=24	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=31	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=117	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=40
JC	972	.	Xen14_184	473	-1	Xen14_76	33	1	0	alignment_overlap=32	coverage_minus=66	coverage_plus=86	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=116	key=Xen14_184__473__-1__Xen14_76__1__1__32____150__150__0__0	max_left=116	max_left_minus=115	max_left_plus=116	max_min_left=56	max_min_left_minus=34	max_min_left_plus=56	max_min_right=55	max_min_right_minus=54	max_min_right_plus=55	max_pos_hash_score=232	max_right=116	max_right_minus=116	max_right_plus=110	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=0.37	new_junction_read_count=152	polymorphism_frequency=1.000e+00	pos_hash_score=78	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=32	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=116	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=152
JC	973	.	Xen14_188	458	-1	Xen14_45	36472	-1	-29	alignment_overlap=-29	coverage_minus=35	coverage_plus=48	flanking_left=150	flanking_right=150	frequency=6.093e-01	junction_possible_overlap_registers=119	key=Xen14_188__458__-1__Xen14_45__36472__-1__-29__CAGCTTCTGCAACAGAACCGGTGAGTCTT__150__150__0__0	max_left=119	max_left_minus=119	max_left_plus=110	max_min_left=60	max_min_left_minus=51	max_min_left_plus=60	max_min_right=55	max_min_right_minus=55	max_min_right_plus=55	max_pos_hash_score=238	max_right=119	max_right_minus=118	max_right_plus=119	neg_log10_pos_hash_p_value=1.2	new_junction_coverage=0.54	new_junction_read_count=84	polymorphism_frequency=6.093e-01	pos_hash_score=55	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.86	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=134	side_2_redundant=0	total_non_overlap_reads=83	unique_read_sequence=CAGCTTCTGCAACAGAACCGGTGAGTCTT
JC	974	.	Xen14_188	458	-1	Xen14_45	36472	-1	-29	alignment_overlap=-29	coverage_minus=47	coverage_plus=37	flanking_left=150	flanking_right=150	frequency=6.093e-01	junction_possible_overlap_registers=119	key=Xen14_188__458__-1__Xen14_45__36472__-1__-29__TAGCTTCTGCAACAGAACCGGTGAGTCTT__150__150__0__0	max_left=116	max_left_minus=110	max_left_plus=116	max_min_left=60	max_min_left_minus=60	max_min_left_plus=58	max_min_right=59	max_min_right_minus=59	max_min_right_plus=56	max_pos_hash_score=238	max_right=120	max_right_minus=120	max_right_plus=116	neg_log10_pos_hash_p_value=1.1	new_junction_coverage=0.54	new_junction_read_count=84	polymorphism_frequency=6.093e-01	pos_hash_score=57	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.86	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=134	side_2_redundant=0	total_non_overlap_reads=84	unique_read_sequence=TAGCTTCTGCAACAGAACCGGTGAGTCTT
JC	975	.	Xen14_19	57504	1	Xen14_19	57818	1	0	alignment_overlap=9	coverage_minus=46	coverage_plus=54	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=139	key=Xen14_19__57504__1__Xen14_19__57809__1__9____150__150__0__0	max_left=136	max_left_minus=128	max_left_plus=136	max_min_left=69	max_min_left_minus=69	max_min_left_plus=65	max_min_right=70	max_min_right_minus=69	max_min_right_plus=70	max_pos_hash_score=278	max_right=140	max_right_minus=133	max_right_plus=140	neg_log10_pos_hash_p_value=0.9	new_junction_coverage=0.79	new_junction_read_count=100	polymorphism_frequency=9.131e-01	pos_hash_score=62	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.12	side_1_overlap=9	side_1_possible_overlap_registers=148	side_1_read_count=16	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.03	side_2_overlap=0	side_2_possible_overlap_registers=139	side_2_read_count=4	side_2_redundant=0	total_non_overlap_reads=100
JC	976	.	Xen14_19	57512	-1	Xen14_19	57808	-1	0	alignment_overlap=9	coverage_minus=57	coverage_plus=55	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=139	key=Xen14_19__57512__-1__Xen14_19__57817__-1__9____150__150__0__0	max_left=140	max_left_minus=140	max_left_plus=135	max_min_left=68	max_min_left_minus=65	max_min_left_plus=68	max_min_right=68	max_min_right_minus=64	max_min_right_plus=68	max_pos_hash_score=278	max_right=141	max_right_minus=140	max_right_plus=141	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.90	new_junction_read_count=115	polymorphism_frequency=9.271e-01	pos_hash_score=76	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.11	side_1_overlap=9	side_1_possible_overlap_registers=148	side_1_read_count=15	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.03	side_2_overlap=0	side_2_possible_overlap_registers=139	side_2_read_count=4	side_2_redundant=0	total_non_overlap_reads=112
JC	977	.	Xen14_19	76848	1	Xen14_54	28019	-1	0	alignment_overlap=0	coverage_minus=42	coverage_plus=32	flanking_left=150	flanking_right=150	frequency=3.848e-01	junction_possible_overlap_registers=148	key=Xen14_19__76848__1__Xen14_54__28019__-1__0____150__150__0__0	max_left=147	max_left_minus=147	max_left_plus=140	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=72	max_min_right_minus=49	max_min_right_plus=72	max_pos_hash_score=296	max_right=72	max_right_minus=49	max_right_plus=72	neg_log10_pos_hash_p_value=4.0	new_junction_coverage=0.51	new_junction_read_count=76	polymorphism_frequency=3.848e-01	pos_hash_score=36	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.05	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=142	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.63	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=101	side_2_redundant=0	total_non_overlap_reads=74
JC	978	.	Xen14_191	447	-1	Xen14_202	21	1	0	alignment_overlap=20	coverage_minus=310	coverage_plus=311	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=128	key=Xen14_191__447__-1__Xen14_202__1__1__20____150__150__0__0	max_left=129	max_left_minus=129	max_left_plus=129	max_min_left=64	max_min_left_minus=63	max_min_left_plus=64	max_min_right=65	max_min_right_minus=64	max_min_right_plus=65	max_pos_hash_score=256	max_right=129	max_right_minus=127	max_right_plus=129	neg_log10_pos_hash_p_value=999999.0	new_junction_coverage=1.90	new_junction_read_count=714	polymorphism_frequency=1.000e+00	pos_hash_score=179	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=20	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=128	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=621
JC	979	.	Xen14_192	1	1	Xen14_198	431	-1	-1	alignment_overlap=-1	coverage_minus=27	coverage_plus=23	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=147	key=Xen14_192__1__1__Xen14_198__431__-1__-1__A__150__150__0__0	max_left=143	max_left_minus=143	max_left_plus=129	max_min_left=74	max_min_left_minus=74	max_min_left_plus=42	max_min_right=73	max_min_right_minus=61	max_min_right_plus=73	max_pos_hash_score=294	max_right=147	max_right_minus=147	max_right_plus=119	neg_log10_pos_hash_p_value=1.2	new_junction_coverage=0.50	new_junction_read_count=50	polymorphism_frequency=1.000e+00	pos_hash_score=34	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=50	unique_read_sequence=A
JC	980	.	Xen14_192	1	1	Xen14_198	431	-1	-1	alignment_overlap=-1	coverage_minus=24	coverage_plus=31	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=147	key=Xen14_192__1__1__Xen14_198__431__-1__-1__G__150__150__0__0	max_left=147	max_left_minus=144	max_left_plus=147	max_min_left=70	max_min_left_minus=70	max_min_left_plus=66	max_min_right=74	max_min_right_minus=65	max_min_right_plus=74	max_pos_hash_score=294	max_right=146	max_right_minus=146	max_right_plus=143	neg_log10_pos_hash_p_value=0.8	new_junction_coverage=0.56	new_junction_read_count=56	polymorphism_frequency=1.000e+00	pos_hash_score=40	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=55	unique_read_sequence=G
JC	981	.	Xen14_193	444	-1	Xen14_85	5914	1	0	alignment_overlap=1	coverage_minus=31	coverage_plus=46	flanking_left=150	flanking_right=150	frequency=5.512e-01	junction_possible_overlap_registers=147	key=Xen14_193__444__-1__Xen14_85__5913__1__1____150__150__0__0	max_left=144	max_left_minus=144	max_left_plus=143	max_min_left=68	max_min_left_minus=61	max_min_left_plus=68	max_min_right=72	max_min_right_minus=72	max_min_right_plus=63	max_pos_hash_score=294	max_right=99	max_right_minus=98	max_right_plus=99	neg_log10_pos_hash_p_value=3.3	new_junction_coverage=0.41	new_junction_read_count=78	polymorphism_frequency=5.512e-01	pos_hash_score=41	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.97	side_2_overlap=0	side_2_possible_overlap_registers=147	side_2_read_count=127	side_2_redundant=0	total_non_overlap_reads=77
JC	982	.	Xen14_194	305	-1	Xen14_25	73236	-1	0	alignment_overlap=4	coverage_minus=4	coverage_plus=5	flanking_left=150	flanking_right=150	frequency=2.000e-01	junction_possible_overlap_registers=144	key=Xen14_194__305__-1__Xen14_25__73240__-1__4____150__150__0__0	max_left=30	max_left_minus=28	max_left_plus=30	max_min_left=30	max_min_left_minus=28	max_min_left_plus=30	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=288	max_right=142	max_right_minus=129	max_right_plus=142	neg_log10_pos_hash_p_value=5.0	new_junction_coverage=0.16	new_junction_read_count=9	polymorphism_frequency=2.000e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.31	side_1_overlap=4	side_1_possible_overlap_registers=148	side_1_read_count=74	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=144	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=9
JC	983	.	Xen14_20	1	1	Xen14_33	53189	-1	0	alignment_overlap=52	coverage_minus=26	coverage_plus=34	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=96	key=Xen14_20__1__1__Xen14_33__53241__-1__52____150__150__0__0	max_left=96	max_left_minus=96	max_left_plus=91	max_min_left=46	max_min_left_minus=25	max_min_left_plus=46	max_min_right=46	max_min_right_minus=45	max_min_right_plus=46	max_pos_hash_score=192	max_right=97	max_right_minus=97	max_right_plus=96	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.12	new_junction_read_count=61	polymorphism_frequency=1.000e+00	pos_hash_score=44	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=52	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=96	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=60
JC	984	.	Xen14_20	75208	1	Xen14_54	41	-1	0	alignment_overlap=0	coverage_minus=49	coverage_plus=19	flanking_left=150	flanking_right=41	frequency=5.591e-01	junction_possible_overlap_registers=148	key=Xen14_20__75208__1__Xen14_54__41__-1__0____150__41__0__1	max_left=149	max_left_minus=149	max_left_plus=149	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=41	max_min_right_minus=41	max_min_right_plus=37	max_pos_hash_score=296	max_right=41	max_right_minus=41	max_right_plus=37	neg_log10_pos_hash_p_value=1.8	new_junction_coverage=0.98	new_junction_read_count=123	polymorphism_frequency=5.591e-01	pos_hash_score=31	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.07	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=97	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=68
JC	985	.	Xen14_20	75208	1	Xen14_68	16331	1	0	alignment_overlap=0	coverage_minus=16	coverage_plus=12	flanking_left=150	flanking_right=52	frequency=2.652e-01	junction_possible_overlap_registers=148	key=Xen14_20__75208__1__Xen14_68__16331__1__0____150__52__0__1	max_left=148	max_left_minus=148	max_left_plus=148	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=52	max_min_right_minus=33	max_min_right_plus=52	max_pos_hash_score=296	max_right=52	max_right_minus=33	max_right_plus=52	neg_log10_pos_hash_p_value=4.9	new_junction_coverage=0.28	new_junction_read_count=35	polymorphism_frequency=2.652e-01	pos_hash_score=15	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.07	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=97	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=28
JC	986	.	Xen14_200	1	1	Xen14_26	75	-1	-64	alignment_overlap=-64	coverage_minus=42	coverage_plus=33	flanking_left=150	flanking_right=75	frequency=1	junction_possible_overlap_registers=84	key=Xen14_200__1__1__Xen14_26__75__-1__-64__CGCAGTTTTTCTATCTGAGCCCGCAGATGTTCTATTTCCCGTTCATCTTCTTCGATCTTTTCTT__150__75__0__1	max_left=85	max_left_minus=82	max_left_plus=85	max_min_left=36	max_min_left_minus=35	max_min_left_plus=36	max_min_right=38	max_min_right_minus=38	max_min_right_plus=25	max_pos_hash_score=168	max_right=75	max_right_minus=75	max_right_plus=75	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.26	new_junction_read_count=82	polymorphism_frequency=1.000e+00	pos_hash_score=42	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=75	unique_read_sequence=CGCAGTTTTTCTATCTGAGCCCGCAGATGTTCTATTTCCCGTTCATCTTCTTCGATCTTTTCTT
JC	987	.	Xen14_202	276	1	Xen14_94	75	-1	0	alignment_overlap=0	coverage_minus=6	coverage_plus=5	flanking_left=146	flanking_right=75	frequency=1.724e-02	junction_possible_overlap_registers=148	key=Xen14_202__276__1__Xen14_94__75__-1__0____146__75__0__1	max_left=96	max_left_minus=96	max_left_plus=88	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=73	max_min_right_minus=73	max_min_right_plus=71	max_pos_hash_score=296	max_right=73	max_right_minus=73	max_right_plus=71	neg_log10_pos_hash_p_value=4.9	new_junction_coverage=0.04	new_junction_read_count=13	polymorphism_frequency=1.724e-02	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.35	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=741	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=11
JC	988	.	Xen14_202	280	-1	Xen14_38	48182	1	0	alignment_overlap=0	coverage_minus=5	coverage_plus=12	flanking_left=150	flanking_right=150	frequency=5.587e-02	junction_possible_overlap_registers=148	key=Xen14_202__280__-1__Xen14_38__48182__1__0____150__150__0__0	max_left=70	max_left_minus=69	max_left_plus=70	max_min_left=70	max_min_left_minus=69	max_min_left_plus=70	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=296	max_right=109	max_right_minus=92	max_right_plus=109	neg_log10_pos_hash_p_value=7.8	new_junction_coverage=0.08	new_junction_read_count=25	polymorphism_frequency=5.587e-02	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.35	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=742	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=103	side_2_redundant=0	total_non_overlap_reads=17
JC	989	.	Xen14_204	1	1	Xen14_47	36190	1	-8	alignment_overlap=-8	coverage_minus=15	coverage_plus=20	flanking_left=150	flanking_right=85	frequency=5.419e-01	junction_possible_overlap_registers=140	key=Xen14_204__1__1__Xen14_47__36190__1__-8__ATTGCTGG__150__85__0__0	max_left=141	max_left_minus=141	max_left_plus=141	max_min_left=61	max_min_left_minus=61	max_min_left_plus=60	max_min_right=58	max_min_right_minus=58	max_min_right_plus=58	max_pos_hash_score=280	max_right=85	max_right_minus=85	max_right_plus=85	neg_log10_pos_hash_p_value=8.9	new_junction_coverage=0.41	new_junction_read_count=47	polymorphism_frequency=5.419e-01	pos_hash_score=17	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.61	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=84	side_2_redundant=0	total_non_overlap_reads=35	unique_read_sequence=ATTGCTGG
JC	990	.	Xen14_204	1	1	Xen14_90	82	-1	-1	alignment_overlap=-1	coverage_minus=3	coverage_plus=0	flanking_left=150	flanking_right=82	frequency=8.159e-02	junction_possible_overlap_registers=147	key=Xen14_204__1__1__Xen14_90__82__-1__-1__A__150__82__0__0	max_left=148	max_left_minus=148	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=5	max_min_right_minus=5	max_min_right_plus=0	max_pos_hash_score=294	max_right=5	max_right_minus=5	max_right_plus=0	neg_log10_pos_hash_p_value=15.7	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=8.159e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.61	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=68	side_2_redundant=0	total_non_overlap_reads=3	unique_read_sequence=A
JC	991	.	Xen14_206	327	1	Xen14_38	48182	1	0	alignment_overlap=0	coverage_minus=18	coverage_plus=20	flanking_left=77	flanking_right=150	frequency=1.521e-01	junction_possible_overlap_registers=148	key=Xen14_206__327__1__Xen14_38__48182__1__0____77__150__0__0	max_left=70	max_left_minus=70	max_left_plus=70	max_min_left=70	max_min_left_minus=70	max_min_left_plus=70	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=296	max_right=125	max_right_minus=125	max_right_plus=124	neg_log10_pos_hash_p_value=5.2	new_junction_coverage=0.10	new_junction_read_count=54	polymorphism_frequency=1.521e-01	pos_hash_score=18	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.53	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=499	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=103	side_2_redundant=0	total_non_overlap_reads=38
JC	992	.	Xen14_206	332	-1	Xen14_94	74	-1	0	alignment_overlap=1	coverage_minus=14	coverage_plus=10	flanking_left=150	flanking_right=74	frequency=4.960e-02	junction_possible_overlap_registers=147	key=Xen14_206__332__-1__Xen14_94__75__-1__1____150__74__0__1	max_left=94	max_left_minus=93	max_left_plus=94	max_min_left=71	max_min_left_minus=71	max_min_left_plus=69	max_min_right=74	max_min_right_minus=74	max_min_right_plus=73	max_pos_hash_score=294	max_right=74	max_right_minus=74	max_right_plus=73	neg_log10_pos_hash_p_value=3.6	new_junction_coverage=0.05	new_junction_read_count=24	polymorphism_frequency=4.960e-02	pos_hash_score=14	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.49	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=463	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=24
JC	993	.	Xen14_21	75	-1	Xen14_93	7777	-1	-23	alignment_overlap=-23	coverage_minus=6	coverage_plus=13	flanking_left=75	flanking_right=150	frequency=1	junction_possible_overlap_registers=125	key=Xen14_21__75__-1__Xen14_93__7777__-1__-23__AAATATGGCGGTGAGGGGGGGAT__75__150__1__0	max_left=70	max_left_minus=70	max_left_plus=67	max_min_left=58	max_min_left_minus=58	max_min_left_plus=56	max_min_right=60	max_min_right_minus=57	max_min_right_plus=60	max_pos_hash_score=250	max_right=119	max_right_minus=98	max_right_plus=119	neg_log10_pos_hash_p_value=2.6	new_junction_coverage=0.37	new_junction_read_count=19	polymorphism_frequency=1.000e+00	pos_hash_score=14	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=19	unique_read_sequence=AAATATGGCGGTGAGGGGGGGAT
JC	994	.	Xen14_22	1	1	Xen14_38	18	-1	-19	alignment_overlap=-19	coverage_minus=13	coverage_plus=6	flanking_left=150	flanking_right=18	frequency=1	junction_possible_overlap_registers=129	key=Xen14_22__1__1__Xen14_38__18__-1__-19__GACACGGAACAACGGCAAA__150__18__0__0	max_left=130	max_left_minus=128	max_left_plus=130	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=18	max_min_right_minus=18	max_min_right_plus=12	max_pos_hash_score=258	max_right=18	max_right_minus=18	max_right_plus=12	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.26	new_junction_read_count=31	polymorphism_frequency=8.557e-01	pos_hash_score=8	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.11	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=12	side_2_redundant=0	total_non_overlap_reads=19	unique_read_sequence=GACACGGAACAACGGCAAA
JC	995	.	Xen14_24	73364	1	Xen14_25	73236	-1	0	alignment_overlap=4	coverage_minus=4	coverage_plus=6	flanking_left=150	flanking_right=150	frequency=2.004e-01	junction_possible_overlap_registers=144	key=Xen14_24__73364__1__Xen14_25__73240__-1__4____150__150__0__0	max_left=42	max_left_minus=28	max_left_plus=42	max_min_left=42	max_min_left_minus=28	max_min_left_plus=42	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=288	max_right=142	max_right_minus=129	max_right_plus=142	neg_log10_pos_hash_p_value=4.6	new_junction_coverage=0.15	new_junction_read_count=10	polymorphism_frequency=2.004e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.98	side_1_overlap=4	side_1_possible_overlap_registers=148	side_1_read_count=82	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=144	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=10
JC	996	.	Xen14_29	59	-1	Xen14_43	39557	-1	0	alignment_overlap=0	coverage_minus=26	coverage_plus=13	flanking_left=59	flanking_right=150	frequency=3.534e-01	junction_possible_overlap_registers=148	key=Xen14_29__59__-1__Xen14_43__39557__-1__0____59__150__1__0	max_left=57	max_left_minus=56	max_left_plus=57	max_min_left=57	max_min_left_minus=56	max_min_left_plus=57	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=296	max_right=132	max_right_minus=132	max_right_plus=119	neg_log10_pos_hash_p_value=1.7	new_junction_coverage=0.58	new_junction_read_count=41	polymorphism_frequency=3.534e-01	pos_hash_score=20	prediction=polymorphism	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.86	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=75	side_2_redundant=0	total_non_overlap_reads=39
JC	997	.	Xen14_29	59	-1	Xen14_96	3984	-1	0	alignment_overlap=0	coverage_minus=8	coverage_plus=7	flanking_left=59	flanking_right=150	frequency=1.402e-01	junction_possible_overlap_registers=148	key=Xen14_29__59__-1__Xen14_96__3984__-1__0____59__150__1__0	max_left=40	max_left_minus=40	max_left_plus=36	max_min_left=40	max_min_left_minus=40	max_min_left_plus=36	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=296	max_right=149	max_right_minus=125	max_right_plus=149	neg_log10_pos_hash_p_value=3.8	new_junction_coverage=0.17	new_junction_read_count=15	polymorphism_frequency=1.402e-01	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.76	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=92	side_2_redundant=0	total_non_overlap_reads=15
JC	998	.	Xen14_31	58602	1	Xen14_78	91	-1	0	alignment_overlap=4	coverage_minus=3	coverage_plus=1	flanking_left=150	flanking_right=91	frequency=3.342e-02	junction_possible_overlap_registers=144	key=Xen14_31__58602__1__Xen14_78__95__-1__4____150__91__0__0	max_left=118	max_left_minus=107	max_left_plus=118	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=39	max_min_right_minus=39	max_min_right_plus=13	max_pos_hash_score=288	max_right=39	max_right_minus=39	max_right_plus=13	neg_log10_pos_hash_p_value=18.6	new_junction_coverage=0.02	new_junction_read_count=4	polymorphism_frequency=3.342e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.77	side_1_overlap=4	side_1_possible_overlap_registers=148	side_1_read_count=133	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.60	side_2_overlap=0	side_2_possible_overlap_registers=144	side_2_read_count=102	side_2_redundant=0	total_non_overlap_reads=4
JC	999	.	Xen14_31	58819	-1	Xen14_78	166	1	0	alignment_overlap=1	coverage_minus=13	coverage_plus=19	flanking_left=150	flanking_right=150	frequency=3.107e-01	junction_possible_overlap_registers=147	key=Xen14_31__58819__-1__Xen14_78__165__1__1____150__150__0__0	max_left=145	max_left_minus=144	max_left_plus=145	max_min_left=63	max_min_left_minus=0	max_min_left_plus=63	max_min_right=23	max_min_right_minus=23	max_min_right_plus=23	max_pos_hash_score=294	max_right=86	max_right_minus=23	max_right_plus=86	neg_log10_pos_hash_p_value=11.0	new_junction_coverage=0.18	new_junction_read_count=32	polymorphism_frequency=3.107e-01	pos_hash_score=17	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.82	side_2_overlap=0	side_2_possible_overlap_registers=147	side_2_read_count=142	side_2_redundant=0	total_non_overlap_reads=32
JC	1000	.	Xen14_33	1	1	Xen14_33	77	-1	-48	alignment_overlap=-48	coverage_minus=19	coverage_plus=16	flanking_left=150	flanking_right=77	frequency=1	junction_possible_overlap_registers=100	key=Xen14_33__1__1__Xen14_33__77__-1__-48__ATATTCATCAGATTTATTAATTTGCTTTATGAATAACTTAAAGAACAT__150__77__0__1	max_left=98	max_left_minus=98	max_left_plus=87	max_min_left=48	max_min_left_minus=36	max_min_left_plus=48	max_min_right=46	max_min_right_minus=46	max_min_right_plus=43	max_pos_hash_score=200	max_right=71	max_right_minus=70	max_right_plus=71	neg_log10_pos_hash_p_value=1.2	new_junction_coverage=0.66	new_junction_read_count=35	polymorphism_frequency=1.000e+00	pos_hash_score=23	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=35	unique_read_sequence=ATATTCATCAGATTTATTAATTTGCTTTATGAATAACTTAAAGAACAT
JC	1001	.	Xen14_35	29714	-1	Xen14_35	29768	-1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=4	flanking_left=150	flanking_right=150	frequency=2.750e-02	junction_possible_overlap_registers=145	key=Xen14_35__29714__-1__Xen14_35__29771__-1__3____150__150__0__0	max_left=89	max_left_minus=0	max_left_plus=89	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=74	max_min_right_minus=0	max_min_right_plus=74	max_pos_hash_score=290	max_right=74	max_right_minus=0	max_right_plus=74	neg_log10_pos_hash_p_value=17.0	new_junction_coverage=0.03	new_junction_read_count=4	polymorphism_frequency=2.750e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.02	side_1_overlap=3	side_1_possible_overlap_registers=148	side_1_read_count=155	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.88	side_2_overlap=0	side_2_possible_overlap_registers=145	side_2_read_count=131	side_2_redundant=0	total_non_overlap_reads=4
JC	1002	.	Xen14_37	76	1	Xen14_37	244	-1	-31	alignment_overlap=-31	coverage_minus=8	coverage_plus=7	flanking_left=150	flanking_right=150	frequency=3.507e-01	junction_possible_overlap_registers=117	key=Xen14_37__76__1__Xen14_37__244__-1__-31__AGCGTCGCATCCGGCAATTGCACCGCGCCAC__150__150__0__0	max_left=108	max_left_minus=103	max_left_plus=108	max_min_left=54	max_min_left_minus=51	max_min_left_plus=54	max_min_right=48	max_min_right_minus=48	max_min_right_plus=45	max_pos_hash_score=234	max_right=65	max_right_minus=65	max_right_plus=65	neg_log10_pos_hash_p_value=4.6	new_junction_coverage=0.28	new_junction_read_count=19	polymorphism_frequency=3.507e-01	pos_hash_score=13	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.37	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=32	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.65	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=57	side_2_redundant=0	total_non_overlap_reads=15	unique_read_sequence=AGCGTCGCATCCGGCAATTGCACCGCGCCAC
JC	1003	.	Xen14_37	42805	-1	Xen14_55	54	-1	-33	alignment_overlap=-33	coverage_minus=3	coverage_plus=13	flanking_left=150	flanking_right=54	frequency=2.329e-01	junction_possible_overlap_registers=115	key=Xen14_37__42805__-1__Xen14_55__54__-1__-33__CTTGCGGGATTATGCTGCTTTAATCATTCAGGA__150__54__0__1	max_left=98	max_left_minus=98	max_left_plus=97	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=54	max_min_right_minus=54	max_min_right_plus=45	max_pos_hash_score=230	max_right=54	max_right_minus=54	max_right_plus=45	neg_log10_pos_hash_p_value=5.1	new_junction_coverage=0.31	new_junction_read_count=21	polymorphism_frequency=2.329e-01	pos_hash_score=11	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.02	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=89	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=16	unique_read_sequence=CTTGCGGGATTATGCTGCTTTAATCATTCAGGA
JC	1004	.	Xen14_37	42805	-1	Xen14_55	56	-1	-46	alignment_overlap=-46	coverage_minus=6	coverage_plus=8	flanking_left=150	flanking_right=56	frequency=2.977e-01	junction_possible_overlap_registers=102	key=Xen14_37__42805__-1__Xen14_55__56__-1__-46__ATACGGGTGTTACCTGAAAGATTTCTACTCGGAACCAATGTTTAAA__150__56__0__1	max_left=76	max_left_minus=70	max_left_plus=76	max_min_left=45	max_min_left_minus=45	max_min_left_plus=0	max_min_right=47	max_min_right_minus=47	max_min_right_plus=47	max_pos_hash_score=204	max_right=56	max_right_minus=56	max_right_plus=47	neg_log10_pos_hash_p_value=5.2	new_junction_coverage=0.43	new_junction_read_count=26	polymorphism_frequency=2.977e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.02	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=89	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=14	unique_read_sequence=ATACGGGTGTTACCTGAAAGATTTCTACTCGGAACCAATGTTTAAA
JC	1005	.	Xen14_37	42885	-1	Xen14_55	54	-1	-51	alignment_overlap=-51	coverage_minus=6	coverage_plus=15	flanking_left=150	flanking_right=54	frequency=4.432e-01	junction_possible_overlap_registers=97	key=Xen14_37__42885__-1__Xen14_55__54__-1__-51__GATACTGCGCTGGATACTACAAACTACTTCCACCGAACCCACCGTCATTAG__150__54__0__1	max_left=93	max_left_minus=67	max_left_plus=93	max_min_left=37	max_min_left_minus=0	max_min_left_plus=37	max_min_right=44	max_min_right_minus=44	max_min_right_plus=36	max_pos_hash_score=194	max_right=44	max_right_minus=44	max_right_plus=44	neg_log10_pos_hash_p_value=3.2	new_junction_coverage=0.42	new_junction_read_count=24	polymorphism_frequency=4.432e-01	pos_hash_score=14	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.53	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=46	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=21	unique_read_sequence=GATACTGCGCTGGATACTACAAACTACTTCCACCGAACCCACCGTCATTAG
JC	1006	.	Xen14_37	43007	-1	Xen14_55	54	-1	-51	alignment_overlap=-51	coverage_minus=6	coverage_plus=13	flanking_left=150	flanking_right=54	frequency=NA	junction_possible_overlap_registers=97	key=Xen14_37__43007__-1__Xen14_55__54__-1__-51__GATACTGCGCTGGATACTACAAACTACTTCCACCGAACCCACCGTCATTAG__150__54__1__1	max_left=78	max_left_minus=67	max_left_plus=78	max_min_left=37	max_min_left_minus=0	max_min_left_plus=37	max_min_right=44	max_min_right_minus=44	max_min_right_plus=36	max_pos_hash_score=194	max_right=44	max_right_minus=44	max_right_plus=44	neg_log10_pos_hash_p_value=3.8	new_junction_coverage=0.38	new_junction_read_count=22	polymorphism_frequency=NA	pos_hash_score=12	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=19	unique_read_sequence=GATACTGCGCTGGATACTACAAACTACTTCCACCGAACCCACCGTCATTAG
JC	1007	.	Xen14_38	15257	1	Xen14_61	77	1	0	alignment_overlap=14	coverage_minus=40	coverage_plus=22	flanking_left=150	flanking_right=150	frequency=4.970e-01	junction_possible_overlap_registers=134	key=Xen14_38__15257__1__Xen14_61__63__1__14____150__150__0__0	max_left=135	max_left_minus=135	max_left_plus=135	max_min_left=60	max_min_left_minus=58	max_min_left_plus=60	max_min_right=65	max_min_right_minus=65	max_min_right_plus=58	max_pos_hash_score=268	max_right=133	max_right_minus=132	max_right_plus=133	neg_log10_pos_hash_p_value=0.9	new_junction_coverage=0.62	new_junction_read_count=63	polymorphism_frequency=4.970e-01	pos_hash_score=44	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.02	side_1_overlap=14	side_1_possible_overlap_registers=148	side_1_read_count=111	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.26	side_2_overlap=0	side_2_possible_overlap_registers=134	side_2_read_count=27	side_2_redundant=0	total_non_overlap_reads=62
JC	1008	.	Xen14_38	15257	1	Xen14_63	19808	-1	0	alignment_overlap=14	coverage_minus=12	coverage_plus=31	flanking_left=150	flanking_right=150	frequency=4.066e-01	junction_possible_overlap_registers=134	key=Xen14_38__15257__1__Xen14_63__19822__-1__14____150__150__0__0	max_left=134	max_left_minus=109	max_left_plus=134	max_min_left=66	max_min_left_minus=53	max_min_left_plus=66	max_min_right=64	max_min_right_minus=63	max_min_right_plus=64	max_pos_hash_score=268	max_right=126	max_right_minus=126	max_right_plus=124	neg_log10_pos_hash_p_value=2.8	new_junction_coverage=0.46	new_junction_read_count=43	polymorphism_frequency=4.066e-01	pos_hash_score=27	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.02	side_1_overlap=14	side_1_possible_overlap_registers=148	side_1_read_count=111	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.28	side_2_overlap=0	side_2_possible_overlap_registers=134	side_2_read_count=25	side_2_redundant=0	total_non_overlap_reads=43
JC	1009	.	Xen14_38	48182	1	Xen14_62	81	-1	-39	alignment_overlap=-39	coverage_minus=6	coverage_plus=3	flanking_left=150	flanking_right=81	frequency=2.288e-01	junction_possible_overlap_registers=109	key=Xen14_38__48182__1__Xen14_62__81__-1__-39__TTTGCGCCCGGATCAGGCCGCAGGGGGAAACTCTGCGGC__150__81__0__0	max_left=110	max_left_minus=109	max_left_plus=110	max_min_left=30	max_min_left_minus=30	max_min_left_plus=0	max_min_right=2	max_min_right_minus=2	max_min_right_plus=1	max_pos_hash_score=218	max_right=81	max_right_minus=81	max_right_plus=1	neg_log10_pos_hash_p_value=5.3	new_junction_coverage=0.21	new_junction_read_count=13	polymorphism_frequency=2.288e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=103	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.27	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=16	side_2_redundant=0	total_non_overlap_reads=9	unique_read_sequence=TTTGCGCCCGGATCAGGCCGCAGGGGGAAACTCTGCGGC
JC	1010	.	Xen14_38	48182	1	Xen14_68	16309	1	-40	alignment_overlap=-40	coverage_minus=10	coverage_plus=10	flanking_left=150	flanking_right=74	frequency=3.530e-01	junction_possible_overlap_registers=108	key=Xen14_38__48182__1__Xen14_68__16309__1__-40__TTTGCGCCCGGATCAGGCCGCAGGGGGAAACTCTGCGGCC__150__74__0__1	max_left=109	max_left_minus=109	max_left_plus=92	max_min_left=48	max_min_left_minus=0	max_min_left_plus=48	max_min_right=30	max_min_right_minus=30	max_min_right_plus=29	max_pos_hash_score=216	max_right=62	max_right_minus=30	max_right_plus=62	neg_log10_pos_hash_p_value=5.0	new_junction_coverage=0.41	new_junction_read_count=41	polymorphism_frequency=3.530e-01	pos_hash_score=12	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=103	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=20	unique_read_sequence=TTTGCGCCCGGATCAGGCCGCAGGGGGAAACTCTGCGGCC
JC	1011	.	Xen14_38	48182	1	Xen14_78	12478	1	-38	alignment_overlap=-38	coverage_minus=6	coverage_plus=3	flanking_left=150	flanking_right=82	frequency=1.569e-01	junction_possible_overlap_registers=110	key=Xen14_38__48182__1__Xen14_78__12478__1__-38__TTTGCGCCCGGATCAGGCCGCAGGGGGAAACTCTGCGG__150__82__0__0	max_left=110	max_left_minus=109	max_left_plus=110	max_min_left=30	max_min_left_minus=30	max_min_left_plus=0	max_min_right=3	max_min_right_minus=3	max_min_right_plus=2	max_pos_hash_score=220	max_right=82	max_right_minus=82	max_right_plus=2	neg_log10_pos_hash_p_value=8.2	new_junction_coverage=0.12	new_junction_read_count=13	polymorphism_frequency=1.569e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=103	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.49	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=85	side_2_redundant=0	total_non_overlap_reads=9	unique_read_sequence=TTTGCGCCCGGATCAGGCCGCAGGGGGAAACTCTGCGG
JC	1012	.	Xen14_41	1	1	Xen14_76	12864	-1	0	alignment_overlap=67	coverage_minus=15	coverage_plus=32	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=81	key=Xen14_41__1__1__Xen14_76__12931__-1__67____150__150__0__0	max_left=81	max_left_minus=81	max_left_plus=76	max_min_left=40	max_min_left_minus=40	max_min_left_plus=37	max_min_right=34	max_min_right_minus=34	max_min_right_plus=31	max_pos_hash_score=162	max_right=81	max_right_minus=52	max_right_plus=81	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.04	new_junction_read_count=56	polymorphism_frequency=1.000e+00	pos_hash_score=35	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=67	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=81	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=47
JC	1013	.	Xen14_45	36968	-1	Xen14_79	487	-1	0	alignment_overlap=0	coverage_minus=7	coverage_plus=15	flanking_left=150	flanking_right=150	frequency=1.317e-01	junction_possible_overlap_registers=148	key=Xen14_45__36968__-1__Xen14_79__487__-1__0____150__150__0__0	max_left=117	max_left_minus=117	max_left_plus=117	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=45	max_min_right_minus=45	max_min_right_plus=41	max_pos_hash_score=296	max_right=45	max_right_minus=45	max_right_plus=41	neg_log10_pos_hash_p_value=13.0	new_junction_coverage=0.15	new_junction_read_count=22	polymorphism_frequency=1.317e-01	pos_hash_score=11	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.79	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=123	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.24	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=167	side_2_redundant=0	total_non_overlap_reads=22
JC	1014	.	Xen14_47	36191	1	Xen14_55	26715	-1	-11	alignment_overlap=-11	coverage_minus=1	coverage_plus=4	flanking_left=84	flanking_right=150	frequency=2.269e-01	junction_possible_overlap_registers=137	key=Xen14_47__36191__1__Xen14_55__26715__-1__-11__ATTACTGCTAC__84__150__0__0	max_left=84	max_left_minus=84	max_left_plus=84	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=57	max_min_right_minus=55	max_min_right_plus=57	max_pos_hash_score=274	max_right=57	max_right_minus=55	max_right_plus=57	neg_log10_pos_hash_p_value=9.7	new_junction_coverage=0.11	new_junction_read_count=11	polymorphism_frequency=2.269e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.59	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=81	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=5	unique_read_sequence=ATTACTGCTAC
JC	1015	.	Xen14_48	34538	1	Xen14_48	34770	-1	0	alignment_overlap=36	coverage_minus=6	coverage_plus=13	flanking_left=150	flanking_right=150	frequency=3.641e-01	junction_possible_overlap_registers=112	key=Xen14_48__34538__1__Xen14_48__34806__-1__36____150__150__0__0	max_left=37	max_left_minus=35	max_left_plus=37	max_min_left=37	max_min_left_minus=35	max_min_left_plus=37	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=224	max_right=113	max_right_minus=107	max_right_plus=113	neg_log10_pos_hash_p_value=6.8	new_junction_coverage=0.25	new_junction_read_count=26	polymorphism_frequency=3.641e-01	pos_hash_score=17	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.87	side_1_overlap=36	side_1_possible_overlap_registers=148	side_1_read_count=120	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=112	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=19
JC	1016	.	Xen14_53	1	1	Xen14_56	161	-1	0	alignment_overlap=9	coverage_minus=25	coverage_plus=30	flanking_left=150	flanking_right=150	frequency=4.387e-01	junction_possible_overlap_registers=139	key=Xen14_53__1__1__Xen14_56__170__-1__9____150__150__0__0	max_left=140	max_left_minus=140	max_left_plus=139	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=61	max_min_right_minus=56	max_min_right_plus=61	max_pos_hash_score=278	max_right=61	max_right_minus=56	max_right_plus=61	neg_log10_pos_hash_p_value=5.7	new_junction_coverage=0.44	new_junction_read_count=59	polymorphism_frequency=4.387e-01	pos_hash_score=30	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=9	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.12	side_2_overlap=0	side_2_possible_overlap_registers=139	side_2_read_count=151	side_2_redundant=0	total_non_overlap_reads=55
JC	1017	.	Xen14_54	15562	1	Xen14_54	15588	1	0	alignment_overlap=11	coverage_minus=5	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=3.209e-02	junction_possible_overlap_registers=137	key=Xen14_54__15562__1__Xen14_54__15577__1__11____150__150__0__0	max_left=41	max_left_minus=41	max_left_plus=0	max_min_left=41	max_min_left_minus=41	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=274	max_right=118	max_right_minus=118	max_right_plus=0	neg_log10_pos_hash_p_value=15.2	new_junction_coverage=0.03	new_junction_read_count=5	polymorphism_frequency=3.209e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.04	side_1_overlap=11	side_1_possible_overlap_registers=148	side_1_read_count=167	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.99	side_2_overlap=0	side_2_possible_overlap_registers=137	side_2_read_count=147	side_2_redundant=0	total_non_overlap_reads=5
JC	1018	.	Xen14_55	1	1	Xen14_55	54	-1	-55	alignment_overlap=-55	coverage_minus=5	coverage_plus=14	flanking_left=150	flanking_right=54	frequency=1	junction_possible_overlap_registers=93	key=Xen14_55__1__1__Xen14_55__54__-1__-55__CTACCAACTGAGCTAACGACCCCTTGCGGGATTATGCTGCTTTAATCATTCAGGA__150__54__0__1	max_left=86	max_left_minus=86	max_left_plus=81	max_min_left=34	max_min_left_minus=34	max_min_left_plus=34	max_min_right=45	max_min_right_minus=30	max_min_right_plus=45	max_pos_hash_score=186	max_right=54	max_right_minus=54	max_right_plus=45	neg_log10_pos_hash_p_value=3.1	new_junction_coverage=0.43	new_junction_read_count=24	polymorphism_frequency=1.000e+00	pos_hash_score=14	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=19	unique_read_sequence=CTACCAACTGAGCTAACGACCCCTTGCGGGATTATGCTGCTTTAATCATTCAGGA
JC	1019	.	Xen14_55	54	-1	Xen14_77	12590	1	-33	alignment_overlap=-33	coverage_minus=4	coverage_plus=1	flanking_left=54	flanking_right=80	frequency=1.618e-01	junction_possible_overlap_registers=115	key=Xen14_55__54__-1__Xen14_77__12590__1__-33__TCCTGAATGATTAAAGCAGCATAATCCCGCAAG__54__80__1__0	max_left=54	max_left_minus=45	max_left_plus=54	max_min_left=54	max_min_left_minus=45	max_min_left_plus=54	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=230	max_right=72	max_right_minus=72	max_right_plus=56	neg_log10_pos_hash_p_value=9.0	new_junction_coverage=0.13	new_junction_read_count=9	polymorphism_frequency=1.618e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.69	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=60	side_2_redundant=0	total_non_overlap_reads=5	unique_read_sequence=TCCTGAATGATTAAAGCAGCATAATCCCGCAAG
JC	1020	.	Xen14_55	56	-1	Xen14_77	12590	1	-46	alignment_overlap=-46	coverage_minus=8	coverage_plus=6	flanking_left=56	flanking_right=80	frequency=NA	junction_possible_overlap_registers=102	key=Xen14_55__56__-1__Xen14_77__12590__1__-46__TTTAAACATTGGTTCCGAGTAGAAATCTTTCAGGTAACACCCGTAT__56__80__1__1	max_left=56	max_left_minus=47	max_left_plus=56	max_min_left=47	max_min_left_minus=47	max_min_left_plus=47	max_min_right=45	max_min_right_minus=0	max_min_right_plus=45	max_pos_hash_score=204	max_right=76	max_right_minus=76	max_right_plus=70	neg_log10_pos_hash_p_value=5.1	new_junction_coverage=0.43	new_junction_read_count=26	polymorphism_frequency=NA	pos_hash_score=9	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=14	unique_read_sequence=TTTAAACATTGGTTCCGAGTAGAAATCTTTCAGGTAACACCCGTAT
JC	1021	.	Xen14_55	26715	-1	Xen14_90	74	-1	-11	alignment_overlap=-11	coverage_minus=31	coverage_plus=23	flanking_left=150	flanking_right=74	frequency=1	junction_possible_overlap_registers=137	key=Xen14_55__26715__-1__Xen14_90__74__-1__-11__GTAGCAGTAAT__150__74__0__1	max_left=138	max_left_minus=138	max_left_plus=135	max_min_left=69	max_min_left_minus=68	max_min_left_plus=69	max_min_right=69	max_min_right_minus=67	max_min_right_plus=69	max_pos_hash_score=274	max_right=74	max_right_minus=74	max_right_plus=70	neg_log10_pos_hash_p_value=1.4	new_junction_coverage=0.59	new_junction_read_count=54	polymorphism_frequency=1.000e+00	pos_hash_score=35	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=54	unique_read_sequence=GTAGCAGTAAT
JC	1022	.	Xen14_75	12904	-1	Xen14_75	12904	1	-9	alignment_overlap=-9	coverage_minus=19	coverage_plus=8	flanking_left=150	flanking_right=149	frequency=3.567e-01	junction_possible_overlap_registers=139	key=Xen14_75__12904__-1__Xen14_75__12904__1__-9__TGCCGATCA__150__149__0__0	max_left=140	max_left_minus=140	max_left_plus=118	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=49	max_min_right_minus=49	max_min_right_plus=40	max_pos_hash_score=278	max_right=49	max_right_minus=49	max_right_plus=40	neg_log10_pos_hash_p_value=4.8	new_junction_coverage=0.57	new_junction_read_count=50	polymorphism_frequency=3.567e-01	pos_hash_score=18	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.96	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=90	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.09	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=102	side_2_redundant=0	total_non_overlap_reads=27	unique_read_sequence=TGCCGATCA
JC	1023	.	Xen14_78	1	1	Xen14_78	77	-1	-64	alignment_overlap=-64	coverage_minus=24	coverage_plus=25	flanking_left=150	flanking_right=77	frequency=1	junction_possible_overlap_registers=84	key=Xen14_78__1__1__Xen14_78__77__-1__-64__CGGGATGCCCCGGATGCCTGTCCACTTGTCGGTGGCGGCGGTGCCGGACGGGTTGGCTTAAAGT__150__77__0__1	max_left=85	max_left_minus=85	max_left_plus=83	max_min_left=42	max_min_left_minus=42	max_min_left_plus=34	max_min_right=43	max_min_right_minus=43	max_min_right_plus=43	max_pos_hash_score=168	max_right=55	max_right_minus=55	max_right_plus=54	neg_log10_pos_hash_p_value=3.0	new_junction_coverage=0.50	new_junction_read_count=50	polymorphism_frequency=1.000e+00	pos_hash_score=30	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=49	unique_read_sequence=CGGGATGCCCCGGATGCCTGTCCACTTGTCGGTGGCGGCGGTGCCGGACGGGTTGGCTTAAAGT
JC	1024	.	Xen14_79	487	-1	Xen14_85	77	-1	0	alignment_overlap=0	coverage_minus=50	coverage_plus=28	flanking_left=150	flanking_right=77	frequency=3.477e-01	junction_possible_overlap_registers=148	key=Xen14_79__487__-1__Xen14_85__77__-1__0____150__77__0__1	max_left=149	max_left_minus=149	max_left_plus=147	max_min_left=73	max_min_left_minus=73	max_min_left_plus=73	max_min_right=72	max_min_right_minus=61	max_min_right_plus=72	max_pos_hash_score=296	max_right=77	max_right_minus=77	max_right_plus=77	neg_log10_pos_hash_p_value=2.5	new_junction_coverage=0.67	new_junction_read_count=89	polymorphism_frequency=3.477e-01	pos_hash_score=47	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.24	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=167	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=78
JC	1025	.	Xen14_86	1	1	Xen14_96	6916	-1	-1	alignment_overlap=-1	coverage_minus=42	coverage_plus=40	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=147	key=Xen14_86__1__1__Xen14_96__6916__-1__-1__C__150__150__0__0	max_left=148	max_left_minus=148	max_left_plus=136	max_min_left=74	max_min_left_minus=74	max_min_left_plus=72	max_min_right=74	max_min_right_minus=66	max_min_right_plus=74	max_pos_hash_score=294	max_right=148	max_right_minus=147	max_right_plus=148	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.80	new_junction_read_count=84	polymorphism_frequency=1.000e+00	pos_hash_score=55	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=82	unique_read_sequence=C
JC	1026	.	Xen14_86	1	1	Xen14_96	6916	-1	-1	alignment_overlap=-1	coverage_minus=33	coverage_plus=35	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=147	key=Xen14_86__1__1__Xen14_96__6916__-1__-1__T__150__150__0__0	max_left=144	max_left_minus=141	max_left_plus=144	max_min_left=71	max_min_left_minus=54	max_min_left_plus=71	max_min_right=74	max_min_right_minus=74	max_min_right_plus=72	max_pos_hash_score=294	max_right=145	max_right_minus=145	max_right_plus=140	neg_log10_pos_hash_p_value=0.8	new_junction_coverage=0.65	new_junction_read_count=68	polymorphism_frequency=1.000e+00	pos_hash_score=46	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=68	unique_read_sequence=T
UN	1027	.	Xen14_1	242556	242556
UN	1028	.	Xen14_10	1	1
UN	1029	.	Xen14_100	1	1
UN	1030	.	Xen14_100	5845	5846
UN	1031	.	Xen14_101	1	1
UN	1032	.	Xen14_101	5614	5615
UN	1033	.	Xen14_102	1	3
UN	1034	.	Xen14_102	13	13
UN	1035	.	Xen14_102	16	16
UN	1036	.	Xen14_103	1	1
UN	1037	.	Xen14_103	5307	5307
UN	1038	.	Xen14_104	1	1
UN	1039	.	Xen14_104	5093	5096
UN	1040	.	Xen14_105	1	1
UN	1041	.	Xen14_105	5061	5061
UN	1042	.	Xen14_106	1	1
UN	1043	.	Xen14_106	4995	4995
UN	1044	.	Xen14_107	1	1
UN	1045	.	Xen14_107	4924	4932
UN	1046	.	Xen14_108	1	1
UN	1047	.	Xen14_108	4816	4816
UN	1048	.	Xen14_109	1	7
UN	1049	.	Xen14_109	317	322
UN	1050	.	Xen14_109	4606	4616
UN	1051	.	Xen14_11	1	1
UN	1052	.	Xen14_11	106941	106943
UN	1053	.	Xen14_110	4578	4578
UN	1054	.	Xen14_111	1	1
UN	1055	.	Xen14_111	4562	4562
UN	1056	.	Xen14_112	1	1
UN	1057	.	Xen14_112	4409	4409
UN	1058	.	Xen14_112	4485	4486
UN	1059	.	Xen14_114	1	1
UN	1060	.	Xen14_114	4039	4039
UN	1061	.	Xen14_115	1	1
UN	1062	.	Xen14_115	3633	3633
UN	1063	.	Xen14_116	1	3
UN	1064	.	Xen14_116	3428	3428
UN	1065	.	Xen14_117	1	13
UN	1066	.	Xen14_117	3411	3427
UN	1067	.	Xen14_118	3350	3355
UN	1068	.	Xen14_119	1	1
UN	1069	.	Xen14_12	1	2
UN	1070	.	Xen14_12	100873	100873
UN	1071	.	Xen14_12	100875	100898
UN	1072	.	Xen14_120	1	13
UN	1073	.	Xen14_120	3123	3123
UN	1074	.	Xen14_121	3064	3065
UN	1075	.	Xen14_121	3068	3076
UN	1076	.	Xen14_122	1	1
UN	1077	.	Xen14_122	2908	2908
UN	1078	.	Xen14_125	1	1
UN	1079	.	Xen14_125	402	402
UN	1080	.	Xen14_125	628	628
UN	1081	.	Xen14_125	968	968
UN	1082	.	Xen14_125	2323	2339
UN	1083	.	Xen14_125	2519	2519
UN	1084	.	Xen14_126	1	67
UN	1085	.	Xen14_126	69	69
UN	1086	.	Xen14_126	79	79
UN	1087	.	Xen14_126	2514	2515
UN	1088	.	Xen14_127	1	2
UN	1089	.	Xen14_127	2166	2166
UN	1090	.	Xen14_128	1	8
UN	1091	.	Xen14_128	12	12
UN	1092	.	Xen14_128	2142	2143
UN	1093	.	Xen14_129	1	1
UN	1094	.	Xen14_129	2049	2049
UN	1095	.	Xen14_13	1	6
UN	1096	.	Xen14_130	1	3
UN	1097	.	Xen14_130	1999	2000
UN	1098	.	Xen14_131	1	16
UN	1099	.	Xen14_131	905	905
UN	1100	.	Xen14_131	936	936
UN	1101	.	Xen14_131	1905	1905
UN	1102	.	Xen14_131	1922	1922
UN	1103	.	Xen14_132	1	1
UN	1104	.	Xen14_132	1805	1806
UN	1105	.	Xen14_133	1	1
UN	1106	.	Xen14_133	1721	1721
UN	1107	.	Xen14_134	1	7
UN	1108	.	Xen14_134	1657	1657
UN	1109	.	Xen14_135	1	1
UN	1110	.	Xen14_135	1627	1633
UN	1111	.	Xen14_136	1567	1567
UN	1112	.	Xen14_137	1	2
UN	1113	.	Xen14_137	1543	1544
UN	1114	.	Xen14_138	1	2
UN	1115	.	Xen14_139	1	1
UN	1116	.	Xen14_14	1	1
UN	1117	.	Xen14_14	89142	89144
UN	1118	.	Xen14_140	1	1
UN	1119	.	Xen14_140	1297	1298
UN	1120	.	Xen14_141	1292	1292
UN	1121	.	Xen14_142	1	1
UN	1122	.	Xen14_142	1267	1281
UN	1123	.	Xen14_143	1	1
UN	1124	.	Xen14_143	206	206
UN	1125	.	Xen14_143	1107	1107
UN	1126	.	Xen14_144	1	1
UN	1127	.	Xen14_144	1089	1091
UN	1128	.	Xen14_145	1062	1062
UN	1129	.	Xen14_146	1	2
UN	1130	.	Xen14_146	1045	1046
UN	1131	.	Xen14_147	1	1
UN	1132	.	Xen14_147	1007	1007
UN	1133	.	Xen14_148	1	4
UN	1134	.	Xen14_15	1	5
UN	1135	.	Xen14_15	82172	82181
UN	1136	.	Xen14_15	82184	82185
UN	1137	.	Xen14_15	82188	82192
UN	1138	.	Xen14_15	83865	83869
UN	1139	.	Xen14_150	1	2
UN	1140	.	Xen14_150	945	945
UN	1141	.	Xen14_151	933	933
UN	1142	.	Xen14_151	938	938
UN	1143	.	Xen14_152	1	5
UN	1144	.	Xen14_152	934	934
UN	1145	.	Xen14_153	1	1
UN	1146	.	Xen14_153	929	929
UN	1147	.	Xen14_154	1	1
UN	1148	.	Xen14_154	920	920
UN	1149	.	Xen14_155	1	8
UN	1150	.	Xen14_155	10	10
UN	1151	.	Xen14_155	12	12
UN	1152	.	Xen14_155	15	15
UN	1153	.	Xen14_155	889	900
UN	1154	.	Xen14_156	1	1
UN	1155	.	Xen14_156	860	862
UN	1156	.	Xen14_157	1	1
UN	1157	.	Xen14_157	857	857
UN	1158	.	Xen14_158	1	3
UN	1159	.	Xen14_158	799	799
UN	1160	.	Xen14_159	1	2
UN	1161	.	Xen14_159	796	798
UN	1162	.	Xen14_16	1	1
UN	1163	.	Xen14_16	81941	81941
UN	1164	.	Xen14_161	1	2
UN	1165	.	Xen14_161	770	770
UN	1166	.	Xen14_162	1	1
UN	1167	.	Xen14_162	765	765
UN	1168	.	Xen14_164	1	1
UN	1169	.	Xen14_164	7	7
UN	1170	.	Xen14_164	738	746
UN	1171	.	Xen14_165	1	2
UN	1172	.	Xen14_166	1	1
UN	1173	.	Xen14_167	1	1
UN	1174	.	Xen14_169	626	626
UN	1175	.	Xen14_17	1	1
UN	1176	.	Xen14_17	80387	80390
UN	1177	.	Xen14_170	1	3
UN	1178	.	Xen14_170	602	602
UN	1179	.	Xen14_170	608	619
UN	1180	.	Xen14_171	569	569
UN	1181	.	Xen14_172	544	569
UN	1182	.	Xen14_173	1	3
UN	1183	.	Xen14_173	564	564
UN	1184	.	Xen14_174	564	564
UN	1185	.	Xen14_175	1	3
UN	1186	.	Xen14_175	560	560
UN	1187	.	Xen14_176	1	2
UN	1188	.	Xen14_176	551	552
UN	1189	.	Xen14_178	1	1
UN	1190	.	Xen14_178	537	541
UN	1191	.	Xen14_179	1	1
UN	1192	.	Xen14_179	531	536
UN	1193	.	Xen14_18	1	1
UN	1194	.	Xen14_18	78780	78780
UN	1195	.	Xen14_180	1	2
UN	1196	.	Xen14_181	1	4
UN	1197	.	Xen14_181	511	511
UN	1198	.	Xen14_182	1	1
UN	1199	.	Xen14_182	470	478
UN	1200	.	Xen14_183	1	11
UN	1201	.	Xen14_184	1	1
UN	1202	.	Xen14_185	1	4
UN	1203	.	Xen14_185	470	471
UN	1204	.	Xen14_186	1	1
UN	1205	.	Xen14_186	465	465
UN	1206	.	Xen14_187	1	1
UN	1207	.	Xen14_188	1	1
UN	1208	.	Xen14_189	1	1
UN	1209	.	Xen14_189	448	453
UN	1210	.	Xen14_19	1	1
UN	1211	.	Xen14_19	57812	57815
UN	1212	.	Xen14_19	77008	77008
UN	1213	.	Xen14_190	1	1
UN	1214	.	Xen14_190	448	448
UN	1215	.	Xen14_191	1	2
UN	1216	.	Xen14_191	444	447
UN	1217	.	Xen14_192	445	445
UN	1218	.	Xen14_193	1	1
UN	1219	.	Xen14_193	444	444
UN	1220	.	Xen14_194	1	1
UN	1221	.	Xen14_194	430	442
UN	1222	.	Xen14_195	438	441
UN	1223	.	Xen14_196	1	10
UN	1224	.	Xen14_196	436	436
UN	1225	.	Xen14_197	1	4
UN	1226	.	Xen14_197	416	433
UN	1227	.	Xen14_199	1	3
UN	1228	.	Xen14_199	428	428
UN	1229	.	Xen14_2	1	26
UN	1230	.	Xen14_2	185198	185210
UN	1231	.	Xen14_20	75563	75563
UN	1232	.	Xen14_200	421	423
UN	1233	.	Xen14_201	1	1
UN	1234	.	Xen14_201	421	421
UN	1235	.	Xen14_202	1	1
UN	1236	.	Xen14_202	421	421
UN	1237	.	Xen14_203	1	1
UN	1238	.	Xen14_203	416	416
UN	1239	.	Xen14_204	1	1
UN	1240	.	Xen14_204	415	415
UN	1241	.	Xen14_205	1	3
UN	1242	.	Xen14_206	1	2
UN	1243	.	Xen14_21	1	24
UN	1244	.	Xen14_21	74833	74837
UN	1245	.	Xen14_22	1	1
UN	1246	.	Xen14_22	74456	74457
UN	1247	.	Xen14_23	1	2
UN	1248	.	Xen14_23	73969	73969
UN	1249	.	Xen14_23	73971	73975
UN	1250	.	Xen14_24	1	1
UN	1251	.	Xen14_24	73662	73668
UN	1252	.	Xen14_25	1	10
UN	1253	.	Xen14_25	73223	73240
UN	1254	.	Xen14_26	1	1
UN	1255	.	Xen14_26	73209	73210
UN	1256	.	Xen14_27	1	1
UN	1257	.	Xen14_27	70100	70100
UN	1258	.	Xen14_27	70510	70510
UN	1259	.	Xen14_27	71260	71260
UN	1260	.	Xen14_28	1	1
UN	1261	.	Xen14_28	64050	64054
UN	1262	.	Xen14_29	1	13
UN	1263	.	Xen14_29	62115	62123
UN	1264	.	Xen14_3	1	1
UN	1265	.	Xen14_3	166307	166311
UN	1266	.	Xen14_30	1	1
UN	1267	.	Xen14_30	61651	61661
UN	1268	.	Xen14_31	1	5
UN	1269	.	Xen14_31	9	9
UN	1270	.	Xen14_31	58818	58819
UN	1271	.	Xen14_32	1	2
UN	1272	.	Xen14_32	55381	55391
UN	1273	.	Xen14_33	53231	53241
UN	1274	.	Xen14_34	1	1
UN	1275	.	Xen14_34	53078	53084
UN	1276	.	Xen14_35	1	1
UN	1277	.	Xen14_35	52845	52845
UN	1278	.	Xen14_36	1	1
UN	1279	.	Xen14_36	51934	51934
UN	1280	.	Xen14_37	1	1
UN	1281	.	Xen14_37	51424	51424
UN	1282	.	Xen14_38	1	1
UN	1283	.	Xen14_38	15362	15362
UN	1284	.	Xen14_38	15801	15801
UN	1285	.	Xen14_38	15816	15816
UN	1286	.	Xen14_38	48835	48836
UN	1287	.	Xen14_39	1	15
UN	1288	.	Xen14_39	1159	1160
UN	1289	.	Xen14_39	1164	1164
UN	1290	.	Xen14_4	1	1
UN	1291	.	Xen14_4	151508	151524
UN	1292	.	Xen14_40	1	1
UN	1293	.	Xen14_40	46785	46791
UN	1294	.	Xen14_41	41429	41431
UN	1295	.	Xen14_42	1	1
UN	1296	.	Xen14_42	41402	41403
UN	1297	.	Xen14_43	1	1
UN	1298	.	Xen14_43	24064	24064
UN	1299	.	Xen14_43	24069	24069
UN	1300	.	Xen14_43	24077	24077
UN	1301	.	Xen14_43	24087	24087
UN	1302	.	Xen14_43	36454	36458
UN	1303	.	Xen14_43	36460	36460
UN	1304	.	Xen14_43	39195	39195
UN	1305	.	Xen14_43	39246	39246
UN	1306	.	Xen14_43	39249	39249
UN	1307	.	Xen14_43	39264	39264
UN	1308	.	Xen14_43	39877	39878
UN	1309	.	Xen14_43	41295	41296
UN	1310	.	Xen14_44	1	1
UN	1311	.	Xen14_44	40957	40957
UN	1312	.	Xen14_45	1	2
UN	1313	.	Xen14_46	1	1
UN	1314	.	Xen14_46	40338	40351
UN	1315	.	Xen14_47	1	1
UN	1316	.	Xen14_47	36274	36274
UN	1317	.	Xen14_48	1	1
UN	1318	.	Xen14_48	34805	34806
UN	1319	.	Xen14_49	1	7
UN	1320	.	Xen14_49	34102	34102
UN	1321	.	Xen14_5	1	4
UN	1322	.	Xen14_5	149058	149062
UN	1323	.	Xen14_50	1	2
UN	1324	.	Xen14_50	33368	33369
UN	1325	.	Xen14_51	1	1
UN	1326	.	Xen14_51	32311	32311
UN	1327	.	Xen14_52	31365	31365
UN	1328	.	Xen14_53	1	3
UN	1329	.	Xen14_53	30293	30293
UN	1330	.	Xen14_54	1	2
UN	1331	.	Xen14_54	28579	28579
UN	1332	.	Xen14_55	1	6
UN	1333	.	Xen14_56	1	5
UN	1334	.	Xen14_56	26420	26428
UN	1335	.	Xen14_57	1	24
UN	1336	.	Xen14_57	25322	25399
UN	1337	.	Xen14_57	26242	26242
UN	1338	.	Xen14_58	1	11
UN	1339	.	Xen14_58	14	14
UN	1340	.	Xen14_58	17	17
UN	1341	.	Xen14_58	24567	24572
UN	1342	.	Xen14_59	1	2
UN	1343	.	Xen14_59	24177	24177
UN	1344	.	Xen14_6	1	3
UN	1345	.	Xen14_6	146749	146760
UN	1346	.	Xen14_60	1	19
UN	1347	.	Xen14_60	22155	22155
UN	1348	.	Xen14_60	23180	23181
UN	1349	.	Xen14_60	23183	23183
UN	1350	.	Xen14_60	23186	23187
UN	1351	.	Xen14_61	1	1
UN	1352	.	Xen14_61	21382	21383
UN	1353	.	Xen14_62	1	21
UN	1354	.	Xen14_62	25	25
UN	1355	.	Xen14_62	28	28
UN	1356	.	Xen14_62	35	35
UN	1357	.	Xen14_62	20210	20210
UN	1358	.	Xen14_63	1	2
UN	1359	.	Xen14_63	19884	19884
UN	1360	.	Xen14_64	1	1
UN	1361	.	Xen14_64	1211	1211
UN	1362	.	Xen14_64	1217	1217
UN	1363	.	Xen14_64	1848	1848
UN	1364	.	Xen14_64	18269	18269
UN	1365	.	Xen14_65	1	6
UN	1366	.	Xen14_65	17088	17143
UN	1367	.	Xen14_65	17856	17856
UN	1368	.	Xen14_66	1	1
UN	1369	.	Xen14_66	17785	17785
UN	1370	.	Xen14_67	1	20
UN	1371	.	Xen14_67	17686	17704
UN	1372	.	Xen14_68	1	1
UN	1373	.	Xen14_68	16378	16382
UN	1374	.	Xen14_69	1	15
UN	1375	.	Xen14_7	1	8
UN	1376	.	Xen14_7	136507	136514
UN	1377	.	Xen14_70	1	18
UN	1378	.	Xen14_70	14202	14202
UN	1379	.	Xen14_70	14208	14208
UN	1380	.	Xen14_70	14217	14217
UN	1381	.	Xen14_70	14402	14402
UN	1382	.	Xen14_71	1	2
UN	1383	.	Xen14_71	14304	14304
UN	1384	.	Xen14_72	1	2
UN	1385	.	Xen14_72	13686	13687
UN	1386	.	Xen14_73	1	1
UN	1387	.	Xen14_73	13156	13156
UN	1388	.	Xen14_73	13158	13160
UN	1389	.	Xen14_74	1	1
UN	1390	.	Xen14_74	13069	13069
UN	1391	.	Xen14_75	1	1
UN	1392	.	Xen14_75	13052	13052
UN	1393	.	Xen14_76	1	11
UN	1394	.	Xen14_76	12826	12826
UN	1395	.	Xen14_76	12830	12830
UN	1396	.	Xen14_76	12928	12931
UN	1397	.	Xen14_77	1	2
UN	1398	.	Xen14_77	12661	12669
UN	1399	.	Xen14_78	1	1
UN	1400	.	Xen14_78	12557	12559
UN	1401	.	Xen14_79	1	1
UN	1402	.	Xen14_79	12457	12462
UN	1403	.	Xen14_79	12466	12553
UN	1404	.	Xen14_8	1	2
UN	1405	.	Xen14_8	132510	132510
UN	1406	.	Xen14_8	132516	132518
UN	1407	.	Xen14_80	1	3
UN	1408	.	Xen14_80	12035	12035
UN	1409	.	Xen14_81	1	1
UN	1410	.	Xen14_81	12012	12020
UN	1411	.	Xen14_82	11971	11983
UN	1412	.	Xen14_83	1	1
UN	1413	.	Xen14_83	11310	11356
UN	1414	.	Xen14_84	1	1
UN	1415	.	Xen14_84	2716	2716
UN	1416	.	Xen14_84	2718	2719
UN	1417	.	Xen14_84	2721	2721
UN	1418	.	Xen14_84	2723	2748
UN	1419	.	Xen14_84	11351	11356
UN	1420	.	Xen14_85	1	2
UN	1421	.	Xen14_85	2740	2740
UN	1422	.	Xen14_85	6678	6678
UN	1423	.	Xen14_85	6793	6793
UN	1424	.	Xen14_85	7570	7570
UN	1425	.	Xen14_85	7581	7581
UN	1426	.	Xen14_85	7585	7585
UN	1427	.	Xen14_85	7588	7588
UN	1428	.	Xen14_85	11194	11197
UN	1429	.	Xen14_86	362	362
UN	1430	.	Xen14_86	563	563
UN	1431	.	Xen14_86	9243	9243
UN	1432	.	Xen14_86	10953	10953
UN	1433	.	Xen14_87	1	1
UN	1434	.	Xen14_87	10348	10348
UN	1435	.	Xen14_88	1	1
UN	1436	.	Xen14_88	10241	10259
UN	1437	.	Xen14_89	1	1
UN	1438	.	Xen14_89	10105	10105
UN	1439	.	Xen14_9	129935	129936
UN	1440	.	Xen14_90	1	8
UN	1441	.	Xen14_90	14	14
UN	1442	.	Xen14_90	9218	9218
UN	1443	.	Xen14_91	1	1
UN	1444	.	Xen14_91	8912	8913
UN	1445	.	Xen14_92	1	2
UN	1446	.	Xen14_92	8230	8232
UN	1447	.	Xen14_93	1	2
UN	1448	.	Xen14_94	1	2
UN	1449	.	Xen14_94	7571	7584
UN	1450	.	Xen14_95	1	1
UN	1451	.	Xen14_95	7307	7342
UN	1452	.	Xen14_96	1	4
UN	1453	.	Xen14_96	3372	3372
UN	1454	.	Xen14_96	3435	3435
UN	1455	.	Xen14_96	4185	4185
UN	1456	.	Xen14_96	4936	4936
UN	1457	.	Xen14_97	1	1
UN	1458	.	Xen14_97	6746	6746
UN	1459	.	Xen14_98	1	6
UN	1460	.	Xen14_98	6351	6351
UN	1461	.	Xen14_98	6594	6594
UN	1462	.	Xen14_99	1	2
UN	1463	.	Xen14_99	6039	6045