mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 242 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007790 | 1,317 | 0 | G | T | 77.8% | 34.1 / 5.2 | 18 | intergenic (+321/‑262) | SAUSA300_RS14705/SAUSA300_RS14710 | replication protein/membrane protein |
| * | NC_007793 | 503,675 | 0 | A | T | 77.8% | 11.0 / ‑1.0 | 9 | noncoding (25/93 nt) | SAUSA300_RS02390 | tRNA‑Ser |
| * | NC_007793 | 2,210,233 | 1 | . | G | 77.3% | 36.3 / 13.8 | 22 | coding (268/648 nt) | SAUSA300_RS11250 | phosphohydrolase |
| * | NC_007793 | 2,210,233 | 2 | . | G | 77.3% | 35.2 / 13.8 | 22 | coding (268/648 nt) | SAUSA300_RS11250 | phosphohydrolase |
| * | NC_007793 | 613,630 | 0 | T | C | 74.1% | 14.5 / 9.7 | 27 | S828S (AGT→AGC) | SAUSA300_RS02915 | serine‑aspartate repeat‑containing protein C |
| * | NC_007793 | 1,929,093 | 0 | A | . | 71.4% | 33.9 / 29.1 | 28 | intergenic (‑179/‑242) | SAUSA300_RS09560/SAUSA300_RS09565 | transposase/hypothetical protein |
| * | NC_007793 | 2,742,999 | 0 | T | G | 70.8% | 26.2 / 13.8 | 27 | intergenic (+95/‑28) | SAUSA300_RS14095/SAUSA300_RS14100 | membrane protein/class I fructose‑bisphosphate aldolase |
| * | NC_007793 | 613,633 | 0 | T | C | 68.2% | 6.1 / 11.2 | 22 | D829D (GAT→GAC) | SAUSA300_RS02915 | serine‑aspartate repeat‑containing protein C |
| * | NC_007793 | 1,111,040 | 0 | A | T | 65.0% | 523.0 / inf | 498 | E702D (GAA→GAT) | SAUSA300_RS05455 | pyruvate carboxylase |
| * | NC_007793 | 1,609,096 | 0 | T | C | 64.5% | 350.6 / inf | 570 | L141S (TTA→TCA) | SAUSA300_RS07945 | AraC family transcriptional regulator |
| * | NC_007793 | 1,609,097 | 0 | A | G | 64.4% | 379.5 / inf | 529 | L141L (TTA→TTG) | SAUSA300_RS07945 | AraC family transcriptional regulator |
| * | NC_007793 | 1,929,120 | 0 | A | C | 63.6% | 28.6 / 31.9 | 33 | intergenic (‑206/‑215) | SAUSA300_RS09560/SAUSA300_RS09565 | transposase/hypothetical protein |
| * | NC_007793 | 1,929,122 | 0 | G | A | 63.6% | 24.6 / 21.3 | 33 | intergenic (‑208/‑213) | SAUSA300_RS09560/SAUSA300_RS09565 | transposase/hypothetical protein |
| * | NC_007793 | 1,929,125 | 0 | T | C | 63.6% | 17.1 / 24.1 | 33 | intergenic (‑211/‑210) | SAUSA300_RS09560/SAUSA300_RS09565 | transposase/hypothetical protein |
| * | NC_007793 | 613,687 | 0 | C | T | 63.3% | 7.0 / 16.2 | 30 | D847D (GAC→GAT) | SAUSA300_RS02915 | serine‑aspartate repeat‑containing protein C |
| * | NC_007793 | 1,929,111 | 0 | T | C | 61.8% | 16.2 / 24.8 | 34 | intergenic (‑197/‑224) | SAUSA300_RS09560/SAUSA300_RS09565 | transposase/hypothetical protein |
| * | NC_007793 | 1,929,117 | 0 | G | T | 61.8% | 22.8 / 36.9 | 34 | intergenic (‑203/‑218) | SAUSA300_RS09560/SAUSA300_RS09565 | transposase/hypothetical protein |
| * | NC_007793 | 1,625,515 | 0 | C | T | 61.4% | 109.7 / 140.6 | 184 | R291R (AGG→AGA) | SAUSA300_RS08025 | geranyltranstransferase |
| * | NC_007793 | 779,100 | 0 | C | A | 61.1% | 4.7 / 14.7 | 19 | intergenic (+15/+127) | SAUSA300_RS03775/SAUSA300_RS03780 | lipoteichoic acid synthase/hypothetical protein |
| * | NC_007793 | 613,657 | 0 | T | C | 60.9% | ‑0.1 / 17.1 | 23 | D837D (GAT→GAC) | SAUSA300_RS02915 | serine‑aspartate repeat‑containing protein C |