Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0077931,609,0960TC64.5% 350.6 / inf 570L141S (TTA→TCA) SAUSA300_RS07945AraC family transcriptional regulator
Reads supporting (aligned to +/- strand):  ref base T (195/6);  new base C (365/0);  total (564/6)
Fisher's exact test for biased strand distribution p-value = 1.91e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.65e-08

Only 100 of 585 total aligned reads displayed.

CACCTATTCAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATTAGAAGAGACAGATGATATTTCATTGGTTGGATATGCACGATTTATAGACACTAAGTATTTGTCACATCCTTTTAATGTTCCGGATTTTTTAGA  >  NC_007793/1608997‑1609189
                                                                                                        |                                                                                             
     aTTCAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATTC‑A‑T‑A‑C‑AGATCggaag                                                                                          >  1:3948081/1‑100 (MQ=255)
     aTTCAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATTC‑A‑C‑A‑C‑AGATCggaag                                                                                          >  1:4357876/1‑100 (MQ=255)
     aTTCAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑G‑G‑AGATCggaag                                                                                          >  1:2332602/1‑100 (MQ=255)
     aTTCAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑G‑AGATCggaag                                                                                          >  1:2597976/1‑100 (MQ=255)
     aTTCAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATTagaag                                                                                          >  1:5446057/1‑100 (MQ=255)
     aTTCAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑C‑A‑C‑AGATCggaag                                                                                          >  1:3450729/1‑100 (MQ=255)
     aTTCAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATAC‑A‑‑‑A‑C‑AGATCggaaga                                                                                         >  1:5519912/1‑100 (MQ=255)
      accAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCT‑A‑T‑A‑C‑AGATCggaaga                                                                                         >  1:2114447/3‑100 (MQ=255)
      acagccccTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATGC‑A‑T‑A‑C‑AGATCggaaga                                                                                         >  1:803012/7‑100 (MQ=255)
       ttaaGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTACCC‑A‑T‑‑‑C‑AGATCGGAagagc                                                                                       >  1:2566918/3‑99 (MQ=255)
       tCAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑T‑C‑AGATCGGAagag                                                                                        >  1:4832029/1‑100 (MQ=255)
       tCAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATAC‑A‑T‑A‑C‑AGATCGGAagag                                                                                        >  1:2054111/1‑100 (MQ=255)
       gcAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑G‑T‑C‑AGATCGGAagag                                                                                        >  1:1754114/2‑100 (MQ=255)
       ccAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑‑‑C‑C‑AGATCGGAagagc                                                                                       >  1:5258920/2‑99 (MQ=255)
        cAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCGG‑T‑A‑C‑AGATCGGAagag                                                                                        >  1:1440093/1‑100 (MQ=255)
        cAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑G‑T‑A‑CAAGATCGGAagag                                                                                        >  1:4412728/1‑100 (MQ=255)
        cAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑TGT‑C‑AGATCGGAagag                                                                                        >  1:586687/1‑100 (MQ=255)
        cAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATCGGAagagc                                                                                       >  1:4486273/1‑99 (MQ=255)
        cAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑‑‑C‑AGATCGGAagagca                                                                                      >  1:724610/1‑98 (MQ=255)
        cAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑G‑A‑C‑AGATCGGAagagc                                                                                       >  1:1281927/1‑99 (MQ=255)
        cAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCA‑C‑T‑A‑C‑AGATCGGAagagc                                                                                       >  1:615362/1‑99 (MQ=255)
        cAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCA‑A‑T‑A‑C‑AGATCGGAagagc                                                                                       >  1:2137545/1‑99 (MQ=255)
        cAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTAGCC‑A‑T‑A‑C‑AGATCGGAagagc                                                                                       >  1:3566831/1‑99 (MQ=255)
        cAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACATTATCC‑A‑C‑T‑C‑AGATAGGAagagc                                                                                       >  1:4634374/1‑99 (MQ=255)
        cAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACCACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATCggaagaac                                                                                       >  1:5125660/1‑98 (MQ=255)
         taGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑T‑G‑A‑C‑AGATCGGAagagca                                                                                      >  1:4855205/2‑98 (MQ=255)
         taGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑TCA‑C‑AGATCGGAagagc                                                                                       >  1:1076323/2‑99 (MQ=255)
         taGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGTTTagaagatcg                                                                                      >  1:3879590/2‑97 (MQ=255)
         taGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATTAGAAGAGAc                                                                                      >  1:2801908/2‑100 (MQ=255)
         taGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATAC‑A‑C‑A‑C‑AGATCGGAagagca                                                                                      >  1:4697375/2‑98 (MQ=255)
         caGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATTC‑A‑T‑A‑C‑AGATCGGAagagca                                                                                      >  1:195719/2‑98 (MQ=255)
         aaGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑G‑G‑A‑C‑AGATCGGAagagca                                                                                      >  1:2482044/1‑98 (MQ=255)
         aaGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑ATT‑A‑C‑AGATCGGAagagc                                                                                       >  1:2012973/1‑99 (MQ=255)
         aaGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATTAGATGAGAc                                                                                      >  1:3353233/1‑100 (MQ=255)
         aaGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATTAGAAGAGAc                                                                                      >  1:3388518/1‑100 (MQ=255)
         aaGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATTAGAAGAGAc                                                                                      >  1:3211358/1‑100 (MQ=255)
         aaGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATCGGAagagca                                                                                      >  1:5348765/1‑98 (MQ=255)
         aaGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATCGGAagagca                                                                                      >  1:5204307/1‑98 (MQ=255)
         aaGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑A‑A‑C‑AGATCGGAagagca                                                                                      >  1:5614608/1‑98 (MQ=255)
          aGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGCGAGAGCACCTTATCC‑A‑C‑T‑C‑AGATCGGAagagcac                                                                                     >  1:2959674/1‑97 (MQ=255)
          aGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑CTAGATCGGAagagca                                                                                      >  1:4555874/1‑98 (MQ=255)
          aGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATTAGAGGAGACa                                                                                     >  1:5321794/1‑100 (MQ=255)
          aGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATTAGAAGAGACa                                                                                     >  1:4117939/1‑100 (MQ=255)
          aGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATTAGAACAGACa                                                                                     >  1:1095081/1‑100 (MQ=255)
          aGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATCGGAagagcac                                                                                     >  1:4985092/1‑97 (MQ=255)
          aGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑A‑ATC‑AGATCGGAagagca                                                                                      >  1:4541212/1‑98 (MQ=255)
          aGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCA‑A‑A‑A‑C‑AGATCGGAagagcac                                                                                     >  1:1706376/1‑97 (MQ=255)
          aGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATAC‑A‑T‑A‑C‑AGATCGGAagagcac                                                                                     >  1:3503731/1‑97 (MQ=255)
          aGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATAC‑A‑T‑A‑C‑AGATCGGAagagcac                                                                                     >  1:3110804/1‑97 (MQ=255)
            ccTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATTAGAAGTGACAga                                                                                   >  1:5045351/1‑100 (MQ=255)
            ccTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATCGGAagagcacac                                                                                   >  1:428285/1‑95 (MQ=255)
             ctctACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCT‑A‑T‑A‑C‑AGATCGGAagagcacacg                                                                                  >  1:4792930/1‑94 (MQ=255)
              cctactaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATTAGAAGTGACAgatc                                                                                 >  1:4074069/2‑99 (MQ=255)
               ctactaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑TGA‑C‑AGATAGGAagagcacacgt                                                                                 >  1:928798/1‑93 (MQ=255)
               ctactaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑CTAGATCGGAagagcacacgt                                                                                 >  1:3806745/1‑93 (MQ=255)
               ctactaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATTAGAAGAGACAgatga                                                                                >  1:641841/1‑100 (MQ=255)
               ctactaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATAC‑A‑T‑A‑C‑AGATCGGAagagcacacgtc                                                                                >  1:579846/1‑92 (MQ=255)
                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAGTTATCAACTACTGAGAGAGCACCTTATTC‑A‑T‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:1981836/1‑90 (MQ=255)
                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTTAGAGAGCACCTTATCT‑A‑T‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:2244094/1‑90 (MQ=255)
                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTTAGAGAGCACCTTATAC‑A‑C‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:2203347/1‑90 (MQ=255)
                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGGGAGAGCACCTTATAC‑A‑A‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:5961251/1‑90 (MQ=255)
                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGGGAGCACCTTATCC‑A‑T‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:3719649/1‑90 (MQ=255)
                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATTC‑A‑T‑T‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:4749332/1‑90 (MQ=255)
                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATTC‑A‑T‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:1590032/1‑90 (MQ=255)
                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATTC‑A‑T‑A‑C‑AGATCGGAagagcacacgtcta                                                                              >  1:5920502/1‑90 (MQ=255)
                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCT‑A‑T‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:4456115/1‑90 (MQ=255)
                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCAA‑G‑A‑C‑AGATCGGAagagcacacgtct                                                                               >  1:2903480/1‑91 (MQ=255)
                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑T‑T‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:1556421/1‑90 (MQ=255)
                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑C‑T‑C‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:3910779/1‑90 (MQ=255)
                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑TGC‑C‑AGATCGGAagagcacacgtct                                                                               >  1:5425526/1‑91 (MQ=255)
                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑TAA‑C‑AGATCGGAagagcacacgtct                                                                               >  1:3317541/1‑91 (MQ=255)
                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑ATC‑AGATCGGAagagcacacgtct                                                                               >  1:4178093/1‑91 (MQ=255)
                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATTAGAGGAGACAgatcgga                                                                              >  1:1641423/1‑96 (MQ=255)
                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATTAGAAGAGACAGATGata                                                                              >  1:302547/1‑100 (MQ=255)
                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATTAGAAGAGACAGATGata                                                                              >  1:2634967/1‑100 (MQ=255)
                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATTAGAAGAGACAGATGata                                                                              >  1:242161/1‑100 (MQ=255)
                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATTAGAAGAGACAGATGata                                                                              >  1:3772075/1‑100 (MQ=255)
                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:4022691/1‑90 (MQ=255)
                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:1540545/1‑90 (MQ=255)
                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:5665963/1‑90 (MQ=255)
                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:1343095/1‑90 (MQ=255)
                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:3634624/1‑90 (MQ=255)
                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:2734829/1‑90 (MQ=255)
                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑C‑C‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:1050592/1‑90 (MQ=255)
                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑C‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:3689740/1‑90 (MQ=255)
                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑A‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:2540033/1‑90 (MQ=255)
                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATAC‑A‑T‑C‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:3597255/1‑90 (MQ=255)
                      aaaaGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATTAGAAGAGACAGATGATAGTTct                                                                         <  1:4910624/100‑2 (MQ=255)
                                         cAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATTAGAAGAGACAGATGATATTTCATTGGTTAGATATGCACGAt                                                      >  1:818176/1‑100 (MQ=255)
                                                                     agatcggaagagCACCTTATCC‑A‑T‑A‑C‑AGATTAGAAGAGACAGATGATATTTCATTGGTTGGATATGCACGATTTATAGACACTAAGTATTTGTCACATcc                          >  1:1229960/9‑100 (MQ=255)
                                                                                      tATCC‑A‑T‑A‑C‑AGATTAGAAGAGACAGATGATATTTCATTGGTTGGATATGCCCGATTTATAGACACTAAGTATTTGTCACATCCTTTTAATGCACCGGaga         >  1:2162061/1‑98 (MQ=255)
                                                                                      tATCC‑A‑T‑A‑C‑AGATTAGAAGAGACAGATGATATTTCATTGGTTGGATATGCACGATTTATAGACACTAAGTATTTGTCACATCCTTTTAATGTTCCGGAtt         >  1:2256423/1‑100 (MQ=255)
                                                                                         cc‑A‑T‑A‑C‑AGATTAGAAGAGACAGATGATATTTCATTGGTTGGATATGCACGATTTATAGACACTAAGTATTTGTCACATCCTTTTAATGTTCCGGAttttt      >  1:5092149/1‑100 (MQ=255)
                                                                                         cc‑A‑T‑A‑C‑AGATTAGAAGAGACAGATGATATTTCATTGGTTGGATATGCACGATTTATAGACACTAAGTATTTGTCACATCCTTTTAATGTTCCGGAttttt      >  1:1134609/1‑100 (MQ=255)
                                                                                          c‑A‑T‑A‑C‑AGATTAGAAGAGACAGATGATATTTCATTGGTTGGATATGCACGATTTATAGACACTAAGTATTTGTCACATCCTTTTAATGTTCCGGAtttttt     <  1:868847/100‑1 (MQ=255)
                                                                                            a‑T‑A‑C‑AGATTAGAAGAGACAGATGATATTTCATTGGTTGGATATGCACGATTTATAGACACTAAGTATTTGTCACATCCTTTTAATGTTCCGGATTTTTTa    >  1:2388972/1‑100 (MQ=255)
                                                                                             ct‑A‑C‑AGATTAGAAGAGACAGATGATATTTCATTGGTTGGATATGCACGATTTATAGACACTAAGTATTTGTCACATCCTTTTAATGTTCCGGATTTTTTa    >  1:5720278/2‑100 (MQ=255)
                                                                                                a‑C‑AGATTAGAAGAGACAGATGATATTTCATTGGTTGGATATGCACGATTTATAGACACTAAGTATTTGTCACATCCTTTTAATGTTCCGGacagatcgga  >  1:1864084/1‑91 (MQ=255)
                                                                                                a‑C‑AGATTAGAAGAGACAGATGATATTTCATTGGTTGGATATGCACGATTTATAGACACTAAGTATTTGTCACATCCTTTTAATGTTCCGGATTTTTTaga  >  1:6003778/1‑100 (MQ=255)
                                                                                                a‑C‑AGATTAGAAGAGACAGATGATATTTCATTGGTTGGATATGCACGATTTATAGACACTAAGTATTTGTAACATCCTTTTAACGTTCCAGAtcggaagag  >  1:4962056/1‑92 (MQ=255)
                                                                                                        |                                                                                             
CACCTATTCAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATTAGAAGAGACAGATGATATTTCATTGGTTGGATATGCACGATTTATAGACACTAAGTATTTGTCACATCCTTTTAATGTTCCGGATTTTTTAGA  >  NC_007793/1608997‑1609189

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑