Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0077931,609,0970AG64.4% 379.5 / inf 529L141L (TTA→TTG) SAUSA300_RS07945AraC family transcriptional regulator
Reads supporting (aligned to +/- strand):  ref base A (182/6);  new base G (340/0);  total (523/6)
Fisher's exact test for biased strand distribution p-value = 1.93e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.71e-19

Only 100 of 582 total aligned reads displayed.

ATTCAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATTAGAAGAGACAGATGATATTTCATTGGTTGGATATGCACGATTTATAGACACTAAGTATTTGTCACATCCTTTTAATGTTCCGGATTTTTTAGA  >  NC_007793/1609002‑1609189
                                                                                                    |                                                                                            
aTTCAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAAGTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATTagaag                                                                                          >  1:2468149/1‑100 (MQ=255)
aTTCAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATTC‑A‑T‑A‑C‑AGATCggaag                                                                                          >  1:3948081/1‑100 (MQ=255)
aTTCAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATTC‑A‑C‑A‑C‑AGATCggaag                                                                                          >  1:4357876/1‑100 (MQ=255)
aTTCAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑C‑A‑C‑AGATCggaag                                                                                          >  1:3450729/1‑100 (MQ=255)
aTTCAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATAC‑A‑‑‑A‑C‑AGATCggaaga                                                                                         >  1:5519912/1‑100 (MQ=255)
 acagccccTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATGC‑A‑T‑A‑C‑AGATCggaaga                                                                                         >  1:803012/7‑100 (MQ=255)
  tCAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATCGGAagag                                                                                        >  1:2012109/1‑100 (MQ=255)
  tCAAGCCTCTACT‑AAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑ACT‑A‑C‑AGATCGGAagag                                                                                        >  1:5133978/1‑100 (MQ=255)
  ccAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATTAGAagag                                                                                        >  1:2561908/2‑100 (MQ=255)
  ccAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑‑‑C‑C‑AGATCGGAagagc                                                                                       >  1:5258920/2‑99 (MQ=255)
  ccAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATAC‑A‑T‑A‑C‑AGATCGGAagag                                                                                        >  1:3266244/2‑100 (MQ=255)
  ccAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATAC‑A‑T‑A‑C‑AGATCGGAagag                                                                                        >  1:169954/2‑100 (MQ=255)
   ccaGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑G‑T‑A‑CAAGATCGGAagag                                                                                        >  1:2523369/3‑100 (MQ=255)
   cAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCGG‑T‑A‑C‑AGATCGGAagag                                                                                        >  1:1440093/1‑100 (MQ=255)
   cAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑G‑T‑A‑CAAGATCGGAagag                                                                                        >  1:4071040/1‑100 (MQ=255)
   cAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑TGT‑C‑AGATCGGAagag                                                                                        >  1:586687/1‑100 (MQ=255)
   cAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATTAGACgaga                                                                                       >  1:2327494/1‑100 (MQ=255)
   cAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATCGGAagagc                                                                                       >  1:4486273/1‑99 (MQ=255)
   cAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑‑‑C‑AGATCGGAagagca                                                                                      >  1:724610/1‑98 (MQ=255)
   cAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑G‑G‑C‑AGATCGGAagagc                                                                                       >  1:3805913/1‑99 (MQ=255)
   cAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑G‑A‑C‑AGATCGGAagagc                                                                                       >  1:1281927/1‑99 (MQ=255)
   cAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCA‑C‑T‑A‑C‑AGATCGGAagagc                                                                                       >  1:615362/1‑99 (MQ=255)
   cAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAACACCTTATCT‑A‑T‑A‑C‑AGATCGGAagagc                                                                                       >  1:4985312/1‑99 (MQ=255)
    taGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑TCA‑C‑AGATCGGAagagc                                                                                       >  1:1076323/2‑99 (MQ=255)
    taGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATTAGAAGAGAc                                                                                      >  1:3559336/2‑100 (MQ=255)
    caGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATTC‑A‑T‑A‑C‑AGATCGGAagagca                                                                                      >  1:195719/2‑98 (MQ=255)
    caGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑T‑G‑A‑C‑AGATCGGAagagca                                                                                      >  1:3023147/2‑98 (MQ=255)
    caGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATCGGAagagca                                                                                      >  1:2727867/2‑98 (MQ=255)
    aggCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑ATT‑C‑C‑AGATCGGAagagc                                                                                       >  1:3593215/3‑99 (MQ=255)
    aaGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATTAGAAGAGAc                                                                                      >  1:5353091/1‑100 (MQ=255)
    aaGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATCGGAagagca                                                                                      >  1:5092760/1‑98 (MQ=255)
    aaGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATCGGAagagca                                                                                      >  1:5204307/1‑98 (MQ=255)
    aaGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑A‑A‑C‑AGATCGGAagagca                                                                                      >  1:5614608/1‑98 (MQ=255)
    aaGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATAC‑A‑T‑A‑C‑AGATCGGAagagca                                                                                      >  1:2254459/1‑98 (MQ=255)
     aGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑CTAGATCGGAagagca                                                                                      >  1:4555874/1‑98 (MQ=255)
     aGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATTAGAGGAGACa                                                                                     >  1:5321794/1‑100 (MQ=255)
     aGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATTAGAAGAGACa                                                                                     >  1:4117939/1‑100 (MQ=255)
     aGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATTAGAACAGACa                                                                                     >  1:1095081/1‑100 (MQ=255)
     aGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATCGGAagagcac                                                                                     >  1:4843064/1‑97 (MQ=255)
     aGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑A‑ATC‑AGATCGGAagagca                                                                                      >  1:4541212/1‑98 (MQ=255)
     aGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATAC‑A‑T‑A‑C‑AGATCGGAagagcac                                                                                     >  1:3503731/1‑97 (MQ=255)
       gctctACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑TAA‑C‑AGATCGGAagagcaca                                                                                    >  1:2790274/2‑96 (MQ=255)
       ccTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATTC‑A‑T‑A‑C‑AGATCGGAagagcacac                                                                                   >  1:4702429/1‑95 (MQ=255)
       ccTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATCGGAagagcacac                                                                                   >  1:428285/1‑95 (MQ=255)
          ctactaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑TGA‑C‑AGATAGGAagagcacacgt                                                                                 >  1:928798/1‑93 (MQ=255)
          ctactaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATTAGAAGAGACAgatga                                                                                >  1:4911317/1‑100 (MQ=255)
          ctactaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATCGGAagagcacacgtc                                                                                >  1:3876383/1‑92 (MQ=255)
          ctactaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑G‑A‑C‑AGATCGGAagagcacacgtc                                                                                >  1:5731561/1‑92 (MQ=255)
            actaAAAAAGATGAATTACAAATTCAAGAGCGCTTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑C‑C‑AGATTAGAAGAGACAGATGata                                                                              >  1:1748574/1‑100 (MQ=255)
            actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAGTTATCAACTACTGAGAGAGCACCTTATTC‑A‑T‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:1981836/1‑90 (MQ=255)
            actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTTAGAGAGCACCTTATAC‑A‑C‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:2203347/1‑90 (MQ=255)
            actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGGGAGAGCACCTTATAC‑A‑A‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:5961251/1‑90 (MQ=255)
            actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGGGAGCACCTTATCC‑A‑T‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:3719649/1‑90 (MQ=255)
            actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATTC‑A‑T‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:315807/1‑90 (MQ=255)
            actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATTC‑A‑T‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:5468329/1‑90 (MQ=255)
            actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATTC‑A‑T‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:1590032/1‑90 (MQ=255)
            actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATTC‑A‑T‑A‑C‑AGATCGGAagagcacacgtcta                                                                              >  1:5920502/1‑90 (MQ=255)
            actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCT‑A‑T‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:4456115/1‑90 (MQ=255)
            actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑T‑T‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:1556421/1‑90 (MQ=255)
            actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑ATC‑AGATCGGAagagcacacgtct                                                                               >  1:4178093/1‑91 (MQ=255)
            actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATTAGAGGAGACAgatcgga                                                                              >  1:1641423/1‑96 (MQ=255)
            actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATTAGAAGAGACAgatgatt                                                                              >  1:2879901/1‑99 (MQ=255)
            actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATTAGAAGAGACAGATGata                                                                              >  1:3381603/1‑100 (MQ=255)
            actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATTAGAAGAGACAGATGata                                                                              >  1:2044246/1‑100 (MQ=255)
            actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATTAGAAGAGACAGATGata                                                                              >  1:242161/1‑100 (MQ=255)
            actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATTAGAAGAGACAGATGata                                                                              >  1:3772075/1‑100 (MQ=255)
            actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:5665963/1‑90 (MQ=255)
            actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:4413233/1‑90 (MQ=255)
            actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:5799993/1‑90 (MQ=255)
            actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:1540545/1‑90 (MQ=255)
            actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:4801785/1‑90 (MQ=255)
            actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:4022691/1‑90 (MQ=255)
            actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:3904361/1‑90 (MQ=255)
            actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:1310038/1‑90 (MQ=255)
            actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:3634624/1‑90 (MQ=255)
            actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:5048698/1‑90 (MQ=255)
            actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑C‑C‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:1050592/1‑90 (MQ=255)
            actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑C‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:3689740/1‑90 (MQ=255)
            actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑A‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:2633476/1‑90 (MQ=255)
            actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCA‑A‑T‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:4758450/1‑90 (MQ=255)
            actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATAC‑A‑T‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:213204/1‑90 (MQ=255)
                   aaGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATTAGAAGAGACAGATGATATCTCaaa                                                                       <  1:30790/100‑3 (MQ=255)
                                  ctCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATTAGAAGAGACAGATGATATTTCATTGGTTGGATATGCACg                                                        >  1:2237752/2‑100 (MQ=255)
                                    cAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATTAGAAGAGACAGATGATATTTCATTGGTTAGATATGCACGAt                                                      >  1:818176/1‑100 (MQ=255)
                                                          aaTCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATTAGAAGAGACAGATGATATTTCATTGGTTGGATATGCACGATTTATAGACACTAAGTATTTGTc                                >  1:2596355/2‑100 (MQ=255)
                                                               actactGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATTAGAAGAGACAGATGATATTTCATTGGTTGGATATGCACGATTTATAGACACTAAGTATTTGTCACATc                           >  1:5433062/1‑100 (MQ=255)
                                                                agatcggaagagCACCTTATCC‑A‑T‑A‑C‑AGATTAGAAGAGACAGATGATATTTCATTGGTTGGATATGCACGATTTATAGACACTAAGTATTTGTCACATcc                          >  1:1229960/9‑100 (MQ=255)
                                                                 tactGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATTAGAAGAGACAGATGATATTTCATTGGTTGGATATGCACGATTTATAGACACTAAGTATTTGTCACATCCt                         >  1:2956251/1‑100 (MQ=255)
                                                                                 tATCC‑A‑T‑A‑C‑AGATTAGAAGAGACAGATGATATTTCATTGGTTGGATATGCCCGATTTATAGACACTAAGTATTTGTCACATCCTTTTAATGCACCGGaga         >  1:2162061/1‑98 (MQ=255)
                                                                                 tATCC‑A‑T‑A‑C‑AGATTAGAAGAGACAGATGATATTTCATTGGTTGGATATGCACGATTTATAGACACTAAGTATTTGTCACATCCTTTTAATGTTCCGGAtt         >  1:663405/1‑100 (MQ=255)
                                                                                 cgccc‑A‑T‑A‑C‑AGATTAGAAGAGACAGATGATATTTCATTGGTTGGATATGCACGATTTATAGACACTAAGTATTTGTCACATCCTTTTAATGTcccaagat         >  1:3342813/4‑95 (MQ=255)
                                                                                    cc‑A‑T‑A‑C‑AGATTAGAAGAGACAGATGATATTTCATTGGTTGGATATGCACGATTTATAGACACTAAGTATTTGTCACATCCTTTTAATGTTCCGGAttttt      >  1:2388337/1‑100 (MQ=255)
                                                                                    cc‑A‑T‑A‑C‑AGATTAGAAGAGACAGATGATATTTCATTGGTTGGATATGCACGATTTATAGACACTAAGTATTTGTCACATCCTTTTAATGTTCCGGAttttt      >  1:1134609/1‑100 (MQ=255)
                                                                                     c‑A‑T‑A‑C‑AGATTAGAAGAGACAGATGATATTTCATTGGTTGGATATGCACGATTTATAGACACTAAGTATTTGTCACATCCTTTTAATGTTCCGGAtttttt     <  1:868847/100‑1 (MQ=255)
                                                                                           a‑C‑AGATTAGAAGAGACAGATGATATTTCATTGGTTGGATATGCACGATTTATAGACACTAAGTATTTGTCACATCCTTTTAATGTTCCGGacagatcgga  >  1:1864084/1‑91 (MQ=255)
                                                                                           a‑C‑AGATTAGAAGAGACAGATGATATTTCATTGGTTGGATATGCACGATTTATAGACACTAAGTATTTGTCACATCCTTTTAATGTTCCGGaaagatcgga  >  1:4866502/1‑91 (MQ=255)
                                                                                           a‑C‑AGATTAGAAGAGACAGATGATATTTCATTGGTTGGATATGCACGATTTATAGACACTAAGTATTTGTCACATCCTTTTAATGTTCCGGATTTTTTaga  >  1:2112623/1‑100 (MQ=255)
                                                                                           a‑C‑AGATTAGAAGAGACAGATGATATTTCATTGGTTGGATATGCACGATTTATAGACACTAAGTATTTGTCACATCCTTTTAATGTTCCGGATTTTTTaga  >  1:6003778/1‑100 (MQ=255)
                                                                                           a‑C‑AGATTAGAAGAGACAGATGATATTTCATTGGTTGGATATGCACGATTTATAGACACTAAGTATTTGTCACATCCTTTTAATGTTCCGGATTTTTTaag  >  1:4682323/1‑98 (MQ=255)
                                                                                           a‑C‑AGATTAGAAGAGACAGATGATATTTCATTGGTTGGATATGCACGATTTATAGACACTAAGTATTTGTAACATCCTTTTAACGTTCCAGAtcggaagag  >  1:4962056/1‑92 (MQ=255)
                                                                                                    |                                                                                            
ATTCAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCC‑A‑T‑A‑C‑AGATTAGAAGAGACAGATGATATTTCATTGGTTGGATATGCACGATTTATAGACACTAAGTATTTGTCACATCCTTTTAATGTTCCGGATTTTTTAGA  >  NC_007793/1609002‑1609189

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑