| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 613,633 | 0 | T | C | 68.2% | 6.1 / 11.2 | 22 | D829D (GAT→GAC) | SAUSA300_RS02915 | serine‑aspartate repeat‑containing protein C |
| Reads supporting (aligned to +/- strand): ref base T (7/0); new base C (15/0); total (22/0) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.23e-01 | |||||||||||
TCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCGGATAGCGATTCA > NC_007793/613544‑613726 | acAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGattcagattcag > 1:5610148/2‑100 (MQ=255) cAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGATTCAGATTCAGACAGCGActcagactcaga > 1:1533247/1‑100 (MQ=14) cAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGAttcagattcaga > 1:3936953/1‑100 (MQ=255) cAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGAttcagattcaga > 1:2050537/1‑100 (MQ=255) cAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGATAGCGACTCAGATTCAGACAGCGActcagactcgga > 1:485791/1‑100 (MQ=17) ctcagactcagaCAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCg > 1:3540752/1‑100 (MQ=255) cgcagacAGCGACTCAGACTCAGACAGCGACCCAGACCCAGATAGCGACTCAGATTCAGACAGCGATTCAGACTCAGACAGCGCCTCAGA‑TCGGaagagc > 1:3590098/3‑95 (MQ=11) caggcAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGTAACTCAGA‑TCGGaagagcac > 1:5832033/1‑93 (MQ=11) cagatAGCGACTCAGATTCAGACAGCGACTCAGATTCAGACAGCGACTCAGACTCAGATAGTGATTCAGACTCAGATAGCGACCCAGA‑TCGGaagagcac > 1:4945394/1‑93 (MQ=14) cagacagcgactcagactcagacagcgactcagactCAGATAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCTAATCAGA‑TCGGaagagcac > 1:3944386/1‑93 (MQ=11) cagacagcgactcagactcagacagcgactcagactCAGATAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGA‑TCGGaagagcac > 1:4953360/1‑93 (MQ=11) cagacagcgactcagactcagacagcgactcagactCAGATAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGA‑TCGGaagagcac > 1:2598541/1‑93 (MQ=11) cagacagcgactcagactcagacagcgactcagactCAGATAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGA‑TCGGaagagcac > 1:324243/1‑93 (MQ=14) cagacagcgactcagactcagacagcgactcagactCAGATAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCAACCCAGA‑TCGGaagagcac > 1:4754719/1‑93 (MQ=14) cagacagcgactcagactcagacagcgactcagactCAGATAGCGACTCAGACTCAGACAGCGATTCAGATTCAGACAGCGACTCAGA‑TCGGaagagcac > 1:81406/1‑93 (MQ=11) cagacAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGA‑TCGGaagagcac > 1:4584388/1‑93 (MQ=14) cagacAGTGATTCAGATTCAGACAGCGACTCAGACTCGGATAGCGACTCAGACTCAGACAGCGATTCAGACTCAGATAGTGACTCAGA‑TCGGaagagcac > 1:3926645/1‑93 (MQ=14) cagacAGTGATTCAGATTCAGACAGCGACTCAGACTCGGATAGCGACTCAGACTCAGACAGCGATTCAGACTCAGATAGCCCCTCAGA‑TCGGaagagcac > 1:2331947/1‑93 (MQ=14) cagacAGCGATTCAGATTCAGACAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGATTCAGATAGTGATTCAGA‑TCGGaagagcac > 1:437002/1‑93 (MQ=14) cagacAGCGATTCAGATTCAGACAGCGACTCAGACTCGGATAGCGATTCAGATTCAGATAGCGATTCGGATTCAGACAGTGATTCAGA‑TCGGaagagcac > 1:4727300/1‑93 (MQ=17) cagacAGCGATTCAGATTCAGACAGCGACTCAGACTCGGATAGCGATTCAGATTCAGATAGCGATTCGGATTCAGACAGTGATTCAGA‑TCGGaagagcac > 1:513976/1‑93 (MQ=17) cagacAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGCCTCAGACAGCGACTCAGACTCAGATAGAGACTCAGA‑TCGGaagagcac > 1:1120207/1‑93 (MQ=14) cagacAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGCGACCCAGA‑TCGGaagagaca > 1:5687576/1‑93 (MQ=14) cagacAGCGACTCAGATTCAGATAGCGATTCAGACACAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGC‑ACTCAGA‑TCGGaagagcaca > 1:2755015/1‑92 (MQ=14) cagacAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGA‑TCGGaagagcac > 1:2124420/1‑93 (MQ=11) cagacAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGA‑TCGGaagagcac > 1:3854234/1‑93 (MQ=11) cagacAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACCCAGA‑TCGGaagagcac > 1:4036641/1‑93 (MQ=11) cagacAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGAGACTCAGA‑TCGGaagagcac > 1:2184887/1‑93 (MQ=11) cagacAGCGACTCAGACTCGGATAGCGATTCAGATTCAGATAGCGATTCGGATTCAGACAGTGATTCAGATTCAGACAGCAACTCAGA‑TCGGaagagcac > 1:2171200/1‑93 (MQ=14) cagacAGCGACTCAGACTCAGACAGCGACTCAGATTTAGATAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGA‑TCGGaagagcac > 1:2424658/1‑93 (MQ=14) cagacAGCGACTCAGACTCAGACAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAACGACTCAGA‑TCGGaagagcac > 1:5859409/1‑93 (MQ=17) tgacAGCGACTCAGACTCGGATAGCGATTCAGATTCAGATAGCGATTCGGATTCAGACAGTGATTCAGATTCAGACAGCGACTCAGA‑TCGGaagagcaca > 1:2968376/2‑92 (MQ=14) agacagcgactcagactcagacagcgactcagactcAGATAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACCCAGA‑TCGGaagagcaca > 1:4996367/1‑92 (MQ=14) acAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGCGACTCAGA‑TCGGaagagcacacg > 1:2293262/1‑90 (MQ=14) | TCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCGGATAGCGATTCA > NC_007793/613544‑613726 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |