mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 336 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 2,000,215 | 0 | A | G | 78.0% | 20.8 / 30.5 | 44 | noncoding (483/2926 nt) | SAUSA300_RS10040 | 23S ribosomal RNA |
| * | NC_007793 | 2,604,207 | 0 | C | A | 76.5% | 23.8 / 3.7 | 17 | S408R (AGC→AGA) | SAUSA300_RS13380 | transporter |
| * | NC_007793 | 110,752 | 0 | A | C | 75.0% | 11.4 / 0.2 | 8 | K184Q (AAA→CAA) | SAUSA300_RS00520 | hypothetical protein |
| * | NC_007793 | 2,249,009 | 0 | A | T | 73.3% | 12.5 / 5.0 | 15 | intergenic (‑396/+3) | SAUSA300_RS11480/SAUSA300_RS11485 | hypothetical protein/ATP‑grasp domain‑containing protein |
| * | NC_007793 | 613,687 | 0 | C | T | 72.7% | 20.5 / 10.8 | 33 | D847D (GAC→GAT) | SAUSA300_RS02915 | serine‑aspartate repeat‑containing protein C |
| * | NC_007793 | 613,699 | 0 | T | C | 68.8% | 13.3 / 16.4 | 32 | D851D (GAT→GAC) | SAUSA300_RS02915 | serine‑aspartate repeat‑containing protein C |
| * | NC_007793 | 2,742,999 | 0 | T | G | 68.8% | 15.8 / 6.0 | 17 | intergenic (+95/‑28) | SAUSA300_RS14095/SAUSA300_RS14100 | membrane protein/class I fructose‑bisphosphate aldolase |
| * | NC_007793 | 613,633 | 0 | T | C | 68.4% | 10.4 / 22.5 | 38 | D829D (GAT→GAC) | SAUSA300_RS02915 | serine‑aspartate repeat‑containing protein C |
| * | NC_007793 | 503,675 | 0 | A | T | 66.7% | 14.7 / 10.7 | 20 | noncoding (25/93 nt) | SAUSA300_RS02390 | tRNA‑Ser |
| * | NC_007793 | 1,111,040 | 0 | A | T | 65.7% | 575.8 / inf | 513 | E702D (GAA→GAT) | SAUSA300_RS05455 | pyruvate carboxylase |
| * | NC_007793 | 1,929,092 | 0 | T | . | 65.5% | 19.9 / 39.3 | 29 | intergenic (‑178/‑243) | SAUSA300_RS09560/SAUSA300_RS09565 | transposase/hypothetical protein |
| * | NC_007793 | 1,625,515 | 0 | C | T | 63.9% | 139.7 / 134.2 | 194 | R291R (AGG→AGA) | SAUSA300_RS08025 | geranyltranstransferase |
| * | NC_007793 | 1,609,096 | 0 | T | C | 63.6% | 248.6 / inf | 432 | L141S (TTA→TCA) | SAUSA300_RS07945 | AraC family transcriptional regulator |
| * | NC_007793 | 1,609,097 | 0 | A | G | 63.3% | 253.1 / 314.3 | 407 | L141L (TTA→TTG) | SAUSA300_RS07945 | AraC family transcriptional regulator |
| * | NC_007793 | 2,272,029 | 0 | T | C | 62.9% | 53.5 / 94.5 | 118 | intergenic (‑29/‑652) | SAUSA300_RS11600/SAUSA300_RS11605 | glutamine‑‑fructose‑6‑phosphate aminotransferase/pts system mannitol‑specific eiicb component |
| * | NC_007793 | 2,000,211 | 0 | C | G | 62.8% | 7.5 / 49.9 | 44 | noncoding (487/2926 nt) | SAUSA300_RS10040 | 23S ribosomal RNA |
| * | NC_007793 | 2,411,453 | 0 | T | G | 62.5% | 9.0 / 12.9 | 16 | Y37D (TAT→GAT) | SAUSA300_RS12395 | hypothetical protein |
| * | NC_007793 | 2,272,026 | 0 | T | G | 62.4% | 41.8 / 127.0 | 117 | intergenic (‑26/‑655) | SAUSA300_RS11600/SAUSA300_RS11605 | glutamine‑‑fructose‑6‑phosphate aminotransferase/pts system mannitol‑specific eiicb component |
| * | NC_007793 | 2,272,018 | 0 | T | G | 61.6% | 69.2 / 139.3 | 125 | intergenic (‑18/‑663) | SAUSA300_RS11600/SAUSA300_RS11605 | glutamine‑‑fructose‑6‑phosphate aminotransferase/pts system mannitol‑specific eiicb component |
| * | NC_007793 | 2,272,021 | 0 | T | C | 61.6% | 59.9 / 108.4 | 125 | intergenic (‑21/‑660) | SAUSA300_RS11600/SAUSA300_RS11605 | glutamine‑‑fructose‑6‑phosphate aminotransferase/pts system mannitol‑specific eiicb component |