| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 2,249,009 | 0 | A | T | 73.3% | 12.5 / 5.0 | 15 | intergenic (‑396/+3) | SAUSA300_RS11480/SAUSA300_RS11485 | hypothetical protein/ATP‑grasp domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base A (3/1); new base T (0/11); total (3/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.79e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.93e-01 | |||||||||||
ACTAGAATCGAAAAAAGCTTGTTACAAACGCATATTCAGTCAACTACTGGCAACACAACATTGTAGCGCCTTATGTTCCGAAC‑TCTAATAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGCCAAACCTTGAT > NC_007793/2248928‑2249102 | aCTAGAATCGAAAAAAGCTTGTTACAAACGCATATTCAGTCAACTACTGGCAACACAACATTGTAGCGCCTTATGTTCCGAAC‑TCTAATAGTGTTCAAGt > 1:5237074/1‑100 (MQ=255) ctGGCAACACAACATTGTAGCGCCTTATGTTCCGAAC‑TCTAATAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAAt > 1:4002379/1‑100 (MQ=255) caacacaacaTTGTAGCGCCTTATGTTCCGAAC‑TCTAATAGGGTTCAAGTTCAGCTAAAAATGCGCGTTCAGTCTCCAGTACTGTTTCTTTTGAATCAcc > 1:1512112/1‑100 (MQ=255) cgtgtgctcttCCGATC‑TCTATTAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGCCa < 1:3457926/91‑1 (MQ=255) cgtgtgctcttCCGATC‑TCTAGTAGTGTTCAAGTTCAGCTAAGAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACGGCCa < 1:41244/91‑1 (MQ=255) cgtgtgctcttCCGATC‑TCTAATGGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATAACCATGCCAAATACAGCCa < 1:1844919/91‑1 (MQ=255) cgtgtgctcttCCGATC‑TCTAATAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGCCa < 1:1796911/91‑1 (MQ=255) cgtgtgctcttCCGATC‑TCTAATAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGCCa < 1:2723460/91‑1 (MQ=255) cgtgtgctcttCCGATC‑TCCTGTAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGCCa < 1:3118901/91‑1 (MQ=255) cgcCTTATGTTCCGAAC‑TCTAATAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGccc < 1:1240923/100‑2 (MQ=255) gtgtgctcttCCGATC‑TCTTATAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGCCaa < 1:4301245/92‑1 (MQ=255) gtgtgctcttCCGATC‑TCTAATAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGCCaa < 1:5176581/92‑1 (MQ=255) tcttCCGATC‑TCTAATAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGCCAAACCTTg < 1:1372302/98‑1 (MQ=255) ttCCGATCTTCTAATAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGCCAAACCTTgg < 1:759575/100‑2 (MQ=255) ttCCGATC‑TCTAATAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGCCAAACCTTGAt < 1:3418390/100‑1 (MQ=255) | ACTAGAATCGAAAAAAGCTTGTTACAAACGCATATTCAGTCAACTACTGGCAACACAACATTGTAGCGCCTTATGTTCCGAAC‑TCTAATAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGCCAAACCTTGAT > NC_007793/2248928‑2249102 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |