Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0077932,272,0290TC62.9% 53.5 / 94.5 118intergenic (‑29/‑652)SAUSA300_RS11600/SAUSA300_RS11605glutamine‑‑fructose‑6‑phosphate aminotransferase/pts system mannitol‑specific eiicb component
Reads supporting (aligned to +/- strand):  ref base T (3/40);  new base C (73/0);  total (76/42)
Fisher's exact test for biased strand distribution p-value = 5.60e-28
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.41e-10

Only 100 of 120 total aligned reads displayed.

TTTTCTAAACCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAATTTAGATTGACAATCTGCTTTCATAATATAAATAGGAACATGCTATCATCGCATTCATCCATAACAAATT  >  NC_007793/2271933‑2272128
                                                                                                  |                                                                                                   
gcatCTAAATCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑CC‑CAGATCGGAAGAGCAca                                                                                                  >  1:1488492/4‑99 (MQ=255)
    cgaaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTCCC‑TC‑CAGATCGGAAGAGCACACGtc                                                                                              >  1:586915/3‑99 (MQ=255)
    cTATACCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑CC‑CAGATCGGAAGAGCACACGtc                                                                                              >  1:3538240/1‑99 (MQ=255)
    cTAGACCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑CT‑CAGATCGGAAGAGCACACGtc                                                                                              >  1:2119273/1‑99 (MQ=255)
    cTAAGCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TCTCAGATCGGAAGAGCACACGt                                                                                               >  1:1292610/1‑100 (MQ=255)
    cTAAACCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTCCC‑TC‑CAGATCGGAAGAGCACACGtc                                                                                              >  1:5529515/1‑99 (MQ=255)
    cTAAACCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTCCC‑CC‑CAGATCGGAAGAGCACACGtc                                                                                              >  1:3428232/1‑99 (MQ=255)
     gtaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTACC‑TC‑CAGATCGGAAGAGCACACGtct                                                                                             >  1:1335033/3‑98 (MQ=255)
     ctaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTCCC‑TC‑CAGATCGGAAGAGCACACGtct                                                                                             >  1:3010324/3‑98 (MQ=255)
      tggccTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTACC‑TC‑CAGATCGGAAGAGCACACGtctg                                                                                            >  1:768495/4‑97 (MQ=255)
      taaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TCTCAGATCGGAAGAGCACACGtct                                                                                             >  1:2585153/2‑98 (MQ=255)
      taaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CAGATCGGAAGAGCACACGtctg                                                                                            >  1:2436027/2‑97 (MQ=255)
      gggccTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑CC‑CAGATCGGAAGAGCACACGtctg                                                                                            >  1:1018517/4‑97 (MQ=255)
      gaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CAGATCGGAAGAGCACACGtctg                                                                                            >  1:1073476/2‑97 (MQ=255)
      gaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CAGATCGGAAGAGCACACGtctg                                                                                            >  1:4676913/2‑97 (MQ=255)
      caaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTACC‑CC‑CAGATCGGAAGAGCACACGtctg                                                                                            >  1:4030580/2‑97 (MQ=255)
      ataCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CAGATCGGAAGAGCACACGtctg                                                                                            >  1:5266977/3‑97 (MQ=255)
      agaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑AC‑CAGATCGGAAGAGCACACGtctg                                                                                            >  1:2958015/3‑97 (MQ=255)
      aagccTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTTC‑TC‑GAGATCGGAAGAGCACACGtctg                                                                                            >  1:3154918/4‑97 (MQ=255)
      aagccTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTCCC‑TC‑CAGATCGGAAGAGCACACGtcta                                                                                            >  1:697250/4‑97 (MQ=255)
      aagccTTTTAATAATAATTCCTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTACC‑TC‑CAGATCGGAAGAGCACACGtctg                                                                                            >  1:3750820/4‑97 (MQ=255)
      aacccTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑CC‑CAGATCGGAAGAGCACACGtctg                                                                                            >  1:1563380/4‑97 (MQ=255)
      aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTTC‑CC‑CAGATCGGAAGAGCACACGtctg                                                                                            >  1:2026252/1‑97 (MQ=255)
      aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCCATC‑CAGATCGGAAGAGCACACGtct                                                                                             >  1:1229547/1‑98 (MQ=255)
      aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TCGCAGATCGGAAGAGCACACGtct                                                                                             >  1:4578671/1‑98 (MQ=255)
      aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CAGATCGGAAGAGCAcacggctg                                                                                            >  1:1996445/1‑96 (MQ=255)
      aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CAGATCGGAAGAGCACACGtctg                                                                                            >  1:3296623/1‑97 (MQ=255)
      aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CAGATCGGAAGAGCACACGtctg                                                                                            >  1:4472963/1‑97 (MQ=255)
      aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CAGATCGGAAGAGCACACGtctg                                                                                            >  1:1430711/1‑97 (MQ=255)
      aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CAGATCGGAAGAGCACACGtctg                                                                                            >  1:1564667/1‑97 (MQ=255)
      aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CAGATCGGAAGAGCACACGtctg                                                                                            >  1:1829136/1‑97 (MQ=255)
      aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CAGATCGGAAGAGCACACGtctg                                                                                            >  1:257241/1‑97 (MQ=255)
      aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑CC‑CAGATCGGAAGAGCACACGtctg                                                                                            >  1:172635/1‑97 (MQ=255)
      aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑CC‑AAGATCGGAAGAGCACACGtctg                                                                                            >  1:740504/1‑97 (MQ=255)
      aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑CC‑AAGATCGGAAGAGCACACGtctg                                                                                            >  1:3918896/1‑97 (MQ=255)
      aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑CA‑CAGATCGGAAGAGCACACGtctg                                                                                            >  1:1693166/1‑97 (MQ=255)
      aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑AC‑CAGATCGGAAGAGCACACGtctg                                                                                            >  1:4762824/1‑97 (MQ=255)
      aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTGCC‑TC‑CAGATCGGAAGAGCACACGtctg                                                                                            >  1:3154805/1‑97 (MQ=255)
      aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTGCC‑TC‑CAGATCGGAAGAGCACACGtctg                                                                                            >  1:5414923/1‑97 (MQ=255)
      aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTGCC‑TC‑CAGATCGGAAGAGCACACGtctg                                                                                            >  1:3926859/1‑97 (MQ=255)
      aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTGCC‑TC‑CAGATCGGAAGAGCACACGtctg                                                                                            >  1:4036408/1‑97 (MQ=255)
      aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTGCC‑TC‑CAGATCGGAAGAGCACACGtctg                                                                                            >  1:4078536/1‑97 (MQ=255)
      aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTGCC‑TA‑CAGATCGGAAGAGCACACGtctg                                                                                            >  1:4142412/1‑97 (MQ=255)
      aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTCCC‑TC‑CAGATCGGAAGAGCACACGtctg                                                                                            >  1:5221148/1‑97 (MQ=255)
      aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTCCC‑TC‑CAGATCGGAAGAGCACACGtctg                                                                                            >  1:1219572/1‑97 (MQ=255)
      aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTCCC‑TC‑AAGATCGGAAGAGCACACGtctg                                                                                            >  1:2738732/1‑97 (MQ=255)
      aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTCCC‑CC‑CAGATCGGAAGAGCACACGtctg                                                                                            >  1:4479296/1‑97 (MQ=255)
      aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTACC‑TC‑TAGATCGGAAGAGCACACGtctg                                                                                            >  1:2965882/1‑97 (MQ=255)
      aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTACC‑TC‑CAGATCGGAAGAGCACACGtctg                                                                                            >  1:949807/1‑97 (MQ=255)
      aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTACC‑TC‑CAGATCGGAAGAGCACACGtctg                                                                                            >  1:2640388/1‑97 (MQ=255)
      aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTACC‑TC‑CAGATCGGAAGAGCACACGtctg                                                                                            >  1:2203802/1‑97 (MQ=255)
      aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTACC‑TC‑CAGATCGGAAGAGCACACGtctg                                                                                            >  1:2348158/1‑97 (MQ=255)
      aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTACC‑AC‑CAGATCGGAAGAGCACACGtctg                                                                                            >  1:1639094/1‑97 (MQ=255)
      aaaCCTTTTAATAATAATTCTTTGGCATTAACATAGCCAATATAACCAACAATTCCACACATAACGACATTTCTC‑TC‑CAGACCGGAAGAGCACACGtctg                                                                                            >  1:5472880/1‑97 (MQ=255)
      aaaCCTTTTAATAATAATTCTTTGGCAGTATCATACCCAATATAACCAACAATTCCACACATAACGACATTTGCC‑TC‑CAGATCGGAAGAGCACACGtctg                                                                                            >  1:4685271/1‑97 (MQ=255)
      aaaCCCTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CAGATCGGAAGAGCACACGtctg                                                                                            >  1:592675/1‑97 (MQ=255)
      aaaCCCTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑CC‑CAGATCGGAAGAGCACACGtctg                                                                                            >  1:3270810/1‑97 (MQ=255)
      aaaCCCTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTGCC‑CC‑CAGATCGGAAGAGCAcacctgaa                                                                                            >  1:4882356/1‑93 (MQ=255)
       agccTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CAGATCGGAAGAGCACACGtctga                                                                                           >  1:4008311/3‑96 (MQ=255)
       agacctttAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑CC‑CAGATCGGAAGAGCACACGtctga                                                                                           >  1:4712677/6‑96 (MQ=255)
       aaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTACC‑CC‑CAGATCGGAAGAGCACACGtctga                                                                                           >  1:1794226/1‑96 (MQ=255)
           ttttAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATg                                                                                       <  1:4620036/100‑1 (MQ=255)
            tttAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGa                                                                                      >  1:2481220/1‑100 (MQ=255)
            tttAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTGCC‑TC‑CAGATCGGAAGAGCACACGtctgaactcc                                                                                      >  1:1511245/1‑91 (MQ=255)
                      atTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACTTTTTCC‑GC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCg                                                                            <  1:1543542/100‑1 (MQ=255)
                      atTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTgggg                                                                            <  1:1873749/100‑4 (MQ=255)
                      atTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCg                                                                            <  1:3982962/100‑1 (MQ=255)
                      atTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCg                                                                            <  1:4941512/100‑1 (MQ=255)
                             ggCATTATCATAGCCAATATAACCAACAATTCCACTCATAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAAttt                                                                     <  1:2363408/100‑1 (MQ=255)
                             ggCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAAttt                                                                     <  1:100989/100‑1 (MQ=255)
                             ggCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAAttt                                                                     <  1:88171/100‑1 (MQ=255)
                             ggCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAAttt                                                                     <  1:1243078/100‑1 (MQ=255)
                             ggCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAAttt                                                                     <  1:1391771/100‑1 (MQ=255)
                             ggCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAAttt                                                                     <  1:315061/100‑1 (MQ=255)
                             ggCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAAttt                                                                     <  1:2848552/100‑1 (MQ=255)
                             ggCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAAttt                                                                     <  1:1653943/100‑1 (MQ=255)
                             ggCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAAttt                                                                     <  1:2813653/100‑1 (MQ=255)
                             ggCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAAttt                                                                     <  1:4105675/100‑1 (MQ=255)
                             ggCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAAttt                                                                     <  1:441796/100‑1 (MQ=255)
                             ggCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAAttt                                                                     <  1:3822043/100‑1 (MQ=255)
                             ggCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAActt                                                                     <  1:2173305/100‑1 (MQ=255)
                             ggCATTATCATAGCCAATATAACCAACAACTCCACACATAACGACATTTTCC‑TC‑CATATTGGAATAGGACGCGTAAATTATGATTTATTGCCGATAAttt                                                                     <  1:5378421/100‑1 (MQ=255)
                             cttccgaTCTTAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTAATTGCCGATAAttt                                                                     <  1:797669/94‑1 (MQ=255)
                                         ggcAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAATTTAGATTGACAATc                                                         >  1:3154269/3‑100 (MQ=255)
                                              tataACCAACAATTCCACACATAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAATTTAGATTGACAATCTGCta                                                    <  1:1973411/100‑2 (MQ=255)
                                               ataACCAACAATTCCACACATAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAATTTAGATTGACAATCTGCttt                                                   <  1:2361479/100‑1 (MQ=255)
                                                  aCCAACAATTCCACACATAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAATTTAGATTGACAATCTgactaatt                                                <  1:3686931/100‑8 (MQ=255)
                                                            ccACACATAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAATTTAGATTGACAATCTGCTTTCATAATATAAATa                                      >  1:3750666/1‑100 (MQ=255)
                                                                 caTAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAATTTAGATTGACAATCTGCTTTCATAATATAAATAGGAAc                                 <  1:5467703/100‑1 (MQ=255)
                                                                 caTAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAATTTAGATTGACAATCTGCTTTCATAATATAAATAGGAAc                                 <  1:33145/100‑1 (MQ=255)
                                                                 caTAACGACATTTTCC‑TC‑CATATTGGAATAGAACGCGTAAATTATGATTTATTGCCGGTAATTTTGATTGACAATCTGCTTTCATAATATAAATAGGAAc                                 <  1:2286630/100‑1 (MQ=255)
                                                                      cGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAATTTAGATTGACAATCTGCTTTCATAATATAAATAGGAACATGCt                            <  1:5084836/100‑1 (MQ=255)
                                                                      cGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAATTTAGATTGACAATCTGCTTTCATAATATAAATAGGAACATGCt                            <  1:4832313/100‑1 (MQ=255)
                                                                              tcc‑tc‑cATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAATTTAGATTGACAATCTGCTTTCATAATATAAATAGGAACATGCTATCATCGc                    <  1:669564/100‑1 (MQ=255)
                                                                                   c‑cATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAATTTAGATTGACAATCTGCTTTCATAATATAAATAGGAACATGCTATCATCGCAttg                <  1:4669557/100‑2 (MQ=255)
                                                                                   c‑cATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAATTTAGATTGACAATCTGCTTTCATAATATAAATAGGAACATGCTATCATCGCATTc                <  1:2385659/100‑1 (MQ=255)
                                                                                     cATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAATTTAGATTGACAATCTGCTTTCATAATATAAATAGGAACATGCTATCATCGCacacg               <  1:3504618/100‑5 (MQ=255)
                                                                                     cATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAATTTAGATTGACAATCTGCTTTCATAATATAAATAGGAACATGCTATCATCGCATTCa               <  1:2265230/100‑1 (MQ=255)
                                                                                     cATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAATTTAGATTGACAATCTGCTTTCATAATATAAATAGGAACATGCTATCATCGCATTCa               <  1:4209140/100‑1 (MQ=255)
                                                                                              aTAGTACGCGTAAATTATGATTTATTGCCGATAATTTAGATTGACAATCTGCTTTCATAATATAAATAGGAACATGCTATCATCGCATTCATCCATAACa      <  1:2536586/100‑1 (MQ=255)
                                                                                                  |                                                                                                   
TTTTCTAAACCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAATTTAGATTGACAATCTGCTTTCATAATATAAATAGGAACATGCTATCATCGCATTCATCCATAACAAATT  >  NC_007793/2271933‑2272128

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑