Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0077932,272,0260TG62.4% 41.8 / 127.0 117intergenic (‑26/‑655)SAUSA300_RS11600/SAUSA300_RS11605glutamine‑‑fructose‑6‑phosphate aminotransferase/pts system mannitol‑specific eiicb component
Reads supporting (aligned to +/- strand):  ref base T (3/41);  new base G (73/0);  total (76/41)
Fisher's exact test for biased strand distribution p-value = 2.10e-28
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.78e-15

Only 100 of 123 total aligned reads displayed.

TCTAATTTTTCTAAACCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCCTC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAATTTAGATTGACAATCTGCTTTCATAATATAAATAGGAACATGCTATCATCGCATTCATCCATAACA  >  NC_007793/2271927‑2272124
                                                                                                    |                                                                                                  
tCTAATTTTTCTAAACCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCCTC‑CATATTGGAAt                                                                                                    <  1:2933534/100‑1 (MQ=255)
tCTAATTTTTCTAAACCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCCTC‑CATATTGGAAt                                                                                                    <  1:353798/100‑1 (MQ=255)
    atgccccTAAACCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTGCCTC‑CAGATCGGAagagca                                                                                                >  1:1077078/7‑98 (MQ=255)
      gcatCTAAATCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCCCC‑CAGATCGGAAGAGCAca                                                                                              >  1:1488492/4‑99 (MQ=255)
          cTATACCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCCCC‑CAGATCGGAAGAGCACACGtc                                                                                          >  1:3538240/1‑99 (MQ=255)
          cTAGACCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCCCT‑CAGATCGGAAGAGCACACGtc                                                                                          >  1:2119273/1‑99 (MQ=255)
          cTAAGCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCCTCTCAGATCGGAAGAGCACACGt                                                                                           >  1:1292610/1‑100 (MQ=255)
          cTAAACCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCCTC‑CAGATCGGAagagccacgtct                                                                                          >  1:46378/1‑92 (MQ=255)
          cTAAACCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTCCCTC‑CAGATCGGAAGAGCACACGtc                                                                                          >  1:5529515/1‑99 (MQ=255)
           gtaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTACCTC‑CAGATCGGAAGAGCACACGtct                                                                                         >  1:1335033/3‑98 (MQ=255)
           ctaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTCCCTC‑CAGATCGGAAGAGCACACGtct                                                                                         >  1:3010324/3‑98 (MQ=255)
            tggccTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTACCTC‑CAGATCGGAAGAGCACACGtctg                                                                                        >  1:768495/4‑97 (MQ=255)
            taaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCCTCTCAGATCGGAAGAGCACACGtct                                                                                         >  1:2585153/2‑98 (MQ=255)
            taaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCCTC‑CAGATCGGAAGAGCACACGtctg                                                                                        >  1:2436027/2‑97 (MQ=255)
            gggccTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCCCC‑CAGATCGGAAGAGCACACGtctg                                                                                        >  1:1018517/4‑97 (MQ=255)
            gaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCCTC‑CAGATCGGAAGAGCACACGtctg                                                                                        >  1:1073476/2‑97 (MQ=255)
            gaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCCTC‑CAGATCGGAAGAGCACACGtctg                                                                                        >  1:4676913/2‑97 (MQ=255)
            caaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTACCCC‑CAGATCGGAAGAGCACACGtctg                                                                                        >  1:4030580/2‑97 (MQ=255)
            ataCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCCTC‑CAGATCGGAAGAGCACACGtctg                                                                                        >  1:5266977/3‑97 (MQ=255)
            aggccTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTCCCTC‑TAGATCGGAAGAGCACACGtctg                                                                                        >  1:2035152/4‑97 (MQ=255)
            agaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCCAC‑CAGATCGGAAGAGCACACGtctg                                                                                        >  1:2958015/3‑97 (MQ=255)
            agaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTACCCC‑CAGATCGGAAGAGCACACGtctg                                                                                        >  1:2455464/3‑97 (MQ=255)
            aagccTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTTCTC‑GAGATCGGAAGAGCACACGtctg                                                                                        >  1:3154918/4‑97 (MQ=255)
            aagccTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTCCCTC‑CAGATCGGAAGAGCACACGtcta                                                                                        >  1:697250/4‑97 (MQ=255)
            aagccTTTTAATAATAATTCCTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTACCTC‑CAGATCGGAAGAGCACACGtctg                                                                                        >  1:3750820/4‑97 (MQ=255)
            aacccTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCCCC‑CAGATCGGAAGAGCACACGtctg                                                                                        >  1:1563380/4‑97 (MQ=255)
            aacccTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTCCCTC‑CAGATCGGAAGAGCACACGtctg                                                                                        >  1:318207/4‑97 (MQ=255)
            aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTTCCC‑CAGATCGGAAGAGCACACGtctg                                                                                        >  1:2026252/1‑97 (MQ=255)
            aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCGTC‑CAGATCGGAAGAGCACACGtctg                                                                                        >  1:1460720/1‑97 (MQ=255)
            aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCCTCGCAGATCGGAAGAGCACACGtct                                                                                         >  1:4578671/1‑98 (MQ=255)
            aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCCTC‑CAGATCGGAAGAGCAcacggctg                                                                                        >  1:1996445/1‑96 (MQ=255)
            aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCCTC‑CAGATCGGAAGAGCACACGtctg                                                                                        >  1:1829136/1‑97 (MQ=255)
            aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCCTC‑CAGATCGGAAGAGCACACGtctg                                                                                        >  1:4472963/1‑97 (MQ=255)
            aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCCTC‑CAGATCGGAAGAGCACACGtctg                                                                                        >  1:3296623/1‑97 (MQ=255)
            aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCCTC‑CAGATCGGAAGAGCACACGtctg                                                                                        >  1:257241/1‑97 (MQ=255)
            aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCCTA‑CAGATCGGAAGAGCACACGtctg                                                                                        >  1:2986972/1‑97 (MQ=255)
            aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCCCA‑CAGATCGGAAGAGCACACGtctg                                                                                        >  1:1693166/1‑97 (MQ=255)
            aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCCAC‑CAGATCGGAAGAGCACACGtctg                                                                                        >  1:4762824/1‑97 (MQ=255)
            aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTGCCTC‑CAGATCGGAAGAGCACACGtctg                                                                                        >  1:3926859/1‑97 (MQ=255)
            aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTGCCTC‑CAGATCGGAAGAGCACACGtctg                                                                                        >  1:5414923/1‑97 (MQ=255)
            aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTGCCTC‑CAGATCGGAAGAGCACACGtctg                                                                                        >  1:4078536/1‑97 (MQ=255)
            aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTGCCTA‑CAGATCGGAAGAGCACACGtctg                                                                                        >  1:4142412/1‑97 (MQ=255)
            aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTCCCTC‑CAGATCGGAAGAGCACACGtctg                                                                                        >  1:5498007/1‑97 (MQ=255)
            aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTCCCTC‑CAGATCGGAAGAGCACACGtctg                                                                                        >  1:5221148/1‑97 (MQ=255)
            aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTCCCTC‑CAGATCGGAAGAGCACACGtctg                                                                                        >  1:1826527/1‑97 (MQ=255)
            aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTCCCTC‑CAGATCGGAAGAGCACACGtctg                                                                                        >  1:1219572/1‑97 (MQ=255)
            aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTCCCCC‑CAGATCGGAAGAGCACACGtctg                                                                                        >  1:4479296/1‑97 (MQ=255)
            aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTACCTC‑CAGATCGGAAGAGCACACGtctg                                                                                        >  1:949807/1‑97 (MQ=255)
            aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTACCTC‑CAGATCGGAAGAGCACACGtctg                                                                                        >  1:2640388/1‑97 (MQ=255)
            aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTACCTC‑CAGATCGGAAGAGCACACGtctg                                                                                        >  1:2348158/1‑97 (MQ=255)
            aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTACCCC‑CAGATCGGAAGAGCACACGtctg                                                                                        >  1:2306763/1‑97 (MQ=255)
            aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTACCCC‑CAGATCGGAAGAGCACACGtctg                                                                                        >  1:2737363/1‑97 (MQ=255)
            aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTACCAC‑CAGATCGGAAGAGCACACGtctg                                                                                        >  1:1639094/1‑97 (MQ=255)
            aaaCCTTTTAATAATAATTCTTTGGCATTAACATAGCCAATATAACCAACAATTCCACACATAACGACATTTCTCTC‑CAGACCGGAAGAGCACACGtctg                                                                                        >  1:5472880/1‑97 (MQ=255)
            aaaCCTTTTAATAATAATTCTTTGGCAGTATCATACCCAATATAACCAACAATTCCACACATAACGACATTTGCCTC‑CAGATCGGAAGAGCACACGtctg                                                                                        >  1:4685271/1‑97 (MQ=255)
            aaaCCCTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCCTC‑CAGATCGGAAGAGCACACGtctg                                                                                        >  1:592675/1‑97 (MQ=255)
            aaaCCCTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCCCC‑CAGATCGGAAGAGCACACGtctg                                                                                        >  1:3270810/1‑97 (MQ=255)
            aaaCCCTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTGCCCC‑CAGATCGGAAGAGCAcacctgaa                                                                                        >  1:4882356/1‑93 (MQ=255)
             agccTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCCTC‑CAGATCGGAAGAGCACACGtctga                                                                                       >  1:4008311/3‑96 (MQ=255)
             aaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTACCCC‑CAGATCGGAAGAGCACACGtctga                                                                                       >  1:1794226/1‑96 (MQ=255)
              aCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTACCTC‑CAGATCGGAAGAGCACACGtctgaa                                                                                      >  1:1615355/1‑95 (MQ=255)
                  tttAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCCTC‑CATATTGGAATAGTACGCGTAAATTATgt                                                                                  <  1:3533775/100‑2 (MQ=255)
                  tttAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTGCCTC‑CAGATCGGAAGAGCACACGtctgaactcc                                                                                  >  1:1511245/1‑91 (MQ=255)
                            atTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACTTTTTCCGC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCg                                                                        <  1:1543542/100‑1 (MQ=255)
                            atTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCCTC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTgggg                                                                        <  1:1873749/100‑4 (MQ=255)
                            atTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCCTC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCg                                                                        <  1:3982962/100‑1 (MQ=255)
                                   ggCATTATCATAGCCAATATAACCAACAATTCCACTCATAACGACATTTTCCTC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAAttt                                                                 <  1:2363408/100‑1 (MQ=255)
                                   ggCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCCTC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAAttt                                                                 <  1:1653943/100‑1 (MQ=255)
                                   ggCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCCTC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAAttt                                                                 <  1:1391771/100‑1 (MQ=255)
                                   ggCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCCTC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAAttt                                                                 <  1:727302/100‑1 (MQ=255)
                                   ggCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCCTC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAAttt                                                                 <  1:1243078/100‑1 (MQ=255)
                                   ggCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCCTC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAAttt                                                                 <  1:88171/100‑1 (MQ=255)
                                   ggCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCCTC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAAttt                                                                 <  1:100989/100‑1 (MQ=255)
                                   ggCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCCTC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAAttt                                                                 <  1:315061/100‑1 (MQ=255)
                                   ggCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCCTC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAAttt                                                                 <  1:2848552/100‑1 (MQ=255)
                                   ggCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCCTC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAAttt                                                                 <  1:441796/100‑1 (MQ=255)
                                   ggCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCCTC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAAttt                                                                 <  1:2813653/100‑1 (MQ=255)
                                   ggCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCCTC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAAttt                                                                 <  1:3822043/100‑1 (MQ=255)
                                   ggCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCCTC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAAttt                                                                 <  1:4105675/100‑1 (MQ=255)
                                   ggCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCCTC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAAttt                                                                 <  1:403549/100‑1 (MQ=255)
                                   ggCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCCTC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAActt                                                                 <  1:2173305/100‑1 (MQ=255)
                                   cttccgaTCTTAGCCAATATAACCAACAATTCCACACATAACGACATTTTCCTC‑CATATTGGAATAGTACGCGTAAATTATGATTAATTGCCGATAAttt                                                                 <  1:797669/94‑1 (MQ=255)
                                               ggcAATATAACCAACAATTCCACACATAACGACATTTTCCTC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAATTTAGATTGACAATc                                                     >  1:3154269/3‑100 (MQ=255)
                                                        aCCAACAATTCCACACATAACGACATTTTCCTC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAATTTAGATTGACAATCTgactaatt                                            <  1:3686931/100‑8 (MQ=255)
                                                                  ccACACATAACGACATTTTCCTC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAATTTAGATTGACAATCTGCTTTCATAATATAAATa                                  >  1:3750666/1‑100 (MQ=255)
                                                                      acaTAACGACATTTTCCTC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAATTTAGATTGACAATCTGCTTTCATAATATAAATAggcg                              <  1:4651173/100‑3 (MQ=255)
                                                                       caTAACGACATTTTCCTC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAATTTAGATTGACAATCTGCTTTCATAATATAAATAGGAAc                             <  1:5467703/100‑1 (MQ=255)
                                                                       caTAACGACATTTTCCTC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAATTTAGATTGACAATCTGCTTTCATAATATAAATAGGAAc                             <  1:33145/100‑1 (MQ=255)
                                                                       caTAACGACATTTTCCTC‑CATATTGGAATAGAACGCGTAAATTATGATTTATTGCCGGTAATTTTGATTGACAATCTGCTTTCATAATATAAATAGGAAc                             <  1:2286630/100‑1 (MQ=255)
                                                                            cGACATTTTCCTC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAATTTAGATTGACAATCTGCTTTCATAATATAAATAGGAACATGCt                        <  1:5084836/100‑1 (MQ=255)
                                                                            cGACATTTTCCTC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAATTTAGATTGACAATCTGCTTTCATAATATAAATAGGAACATGCt                        <  1:4832313/100‑1 (MQ=255)
                                                                                    tcctc‑cATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAATTTAGATTGACAATCTGCTTTCATAATATAAATAGGAACATGCTATCATCGc                <  1:5263273/100‑1 (MQ=255)
                                                                                    tcctc‑cATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAATTTAGATTGACAATCTGCTTTCATAATATAAATAGGAACATGCTATCATCGc                <  1:669564/100‑1 (MQ=255)
                                                                                        c‑cATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAATTTAGATTGACAATCTGCTTTCATAATATAAATAGGAACATGCTATCATCGCAttg            <  1:4669557/100‑2 (MQ=255)
                                                                                        c‑cATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAATTTAGATTGACAATCTGCTTTCATAATATAAATAGGAACATGCTATCATCGCATTc            <  1:2385659/100‑1 (MQ=255)
                                                                                        c‑cATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAATTTAGATTGACAATCTGCTTTCATAATATAAATAGGAACATGCTATCATCGCATTc            <  1:4815959/100‑1 (MQ=255)
                                                                                          cATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAATTTAGATTGACAATCTGCTTTCATAATATAAATAGGAACATGCTATCATCGCacacg           <  1:3504618/100‑5 (MQ=255)
                                                                                          cATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAATTTAGATTGACAATCTGCTTTCATAATATAAATAGGAACATGCTATCATCGCATTCa           <  1:4209140/100‑1 (MQ=255)
                                                                                          cATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAATTTAGATTGACAATCTGCTTTCATAATATAAATAGGAACATGCTATCATCGCATTCa           <  1:2265230/100‑1 (MQ=255)
                                                                                                   aTAGTACGCGTAAATTATGATTTATTGCCGATAATTTAGATTGACAATCTGCTTTCATAATATAAATAGGAACATGCTATCATCGCATTCATCCATAACa  <  1:2536586/100‑1 (MQ=255)
                                                                                                    |                                                                                                  
TCTAATTTTTCTAAACCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCCTC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAATTTAGATTGACAATCTGCTTTCATAATATAAATAGGAACATGCTATCATCGCATTCATCCATAACA  >  NC_007793/2271927‑2272124

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑