Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0077932,272,0210TC61.6% 59.9 / 108.4 125intergenic (‑21/‑660)SAUSA300_RS11600/SAUSA300_RS11605glutamine‑‑fructose‑6‑phosphate aminotransferase/pts system mannitol‑specific eiicb component
Reads supporting (aligned to +/- strand):  ref base T (4/44);  new base C (77/0);  total (81/44)
Fisher's exact test for biased strand distribution p-value = 1.59e-29
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.80e-07

Only 100 of 125 total aligned reads displayed.

GTATTCTAATTTTTCTAAACCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAATTTAGATTGACAATCTGCTTTCATAATATAAATAGGAACATGCTATCATCGCATTCA  >  NC_007793/2271923‑2272115
                                                                                                    |                                                                                              
gTATTCTAATTTTTCTAAACCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CATATTg                                                                                               >  1:4694448/1‑100 (MQ=255)
  aTTCTAATTTTTCTAAACCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CATATTGGa                                                                                             <  1:1303414/100‑1 (MQ=255)
    tCTAATTTTTCTAAACCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CATATTGGAAt                                                                                           <  1:353798/100‑1 (MQ=255)
    tCTAATTTTTCTAAACCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CATATTGGAAt                                                                                           <  1:2933534/100‑1 (MQ=255)
     ctatgctatCTAAACCCTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑‑C‑CAGATCGGAagag                                                                                         >  1:3637308/9‑100 (MQ=255)
        atgccccTAAACCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTGCC‑TC‑CAGATCGGAagagca                                                                                       >  1:1077078/7‑98 (MQ=255)
          gcatCTAAATCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑CC‑CAGATCGGAAGAGCAca                                                                                     >  1:1488492/4‑99 (MQ=255)
              cTAGACCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑CT‑CAGATCGGAAGAGCACACGtc                                                                                 >  1:2119273/1‑99 (MQ=255)
              cTAAGCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TCTCAGATCGGAAGAGCACACGt                                                                                  >  1:1292610/1‑100 (MQ=255)
              cTAAACCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CAGATCGGAagagccacgtct                                                                                 >  1:46378/1‑92 (MQ=255)
              cTAAACCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTCCC‑TC‑CAGATCGGAAGAGCACACGtc                                                                                 >  1:5529515/1‑99 (MQ=255)
              cTAAACCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTCCC‑CC‑CAGATCGGAAGAGCACACGtc                                                                                 >  1:3428232/1‑99 (MQ=255)
              cTAAACCATTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CAGATCGGAAGAGCACACGtc                                                                                 >  1:4286285/1‑99 (MQ=255)
               ctaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTCCC‑TC‑CAGATCGGAAGAGCACACGtct                                                                                >  1:3010324/3‑98 (MQ=255)
                tggccTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTACC‑TC‑CAGATCGGAAGAGCACACGtctg                                                                               >  1:768495/4‑97 (MQ=255)
                taaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TCTCAGATCGGAAGAGCACACGtct                                                                                >  1:2585153/2‑98 (MQ=255)
                taaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CAGATCGGAAGAGCACACGtctg                                                                               >  1:2436027/2‑97 (MQ=255)
                gggccTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑CC‑CAGATCGGAAGAGCACACGtctg                                                                               >  1:1018517/4‑97 (MQ=255)
                gaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CAGATCGGAAGAGCACACGtctg                                                                               >  1:1073476/2‑97 (MQ=255)
                gaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CAGATCGGAAGAGCACACGtctg                                                                               >  1:4676913/2‑97 (MQ=255)
                ataCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CAGATCGGAAGAGCACACGtctg                                                                               >  1:5266977/3‑97 (MQ=255)
                aggccTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTCCC‑TC‑TAGATCGGAAGAGCACACGtctg                                                                               >  1:2035152/4‑97 (MQ=255)
                agaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑AC‑CAGATCGGAAGAGCACACGtctg                                                                               >  1:2958015/3‑97 (MQ=255)
                agaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTACC‑CC‑CAGATCGGAAGAGCACACGtctg                                                                               >  1:2455464/3‑97 (MQ=255)
                aagccTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTTC‑TC‑GAGATCGGAAGAGCACACGtctg                                                                               >  1:3154918/4‑97 (MQ=255)
                aagccTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTCCC‑TC‑CAGATCGGAAGAGCACACGtcta                                                                               >  1:697250/4‑97 (MQ=255)
                aagccTTTTAATAATAATTCCTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTACC‑TC‑CAGATCGGAAGAGCACACGtctg                                                                               >  1:3750820/4‑97 (MQ=255)
                aacccTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑CC‑CAGATCGGAAGAGCACACGtctg                                                                               >  1:1563380/4‑97 (MQ=255)
                aacccTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTCCC‑TC‑CAGATCGGAAGAGCACACGtctg                                                                               >  1:318207/4‑97 (MQ=255)
                aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCG‑TC‑CAGATCGGAAGAGCACACGtctg                                                                               >  1:1460720/1‑97 (MQ=255)
                aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCCATC‑CAGATCGGAAGAGCACACGtct                                                                                >  1:1229547/1‑98 (MQ=255)
                aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TCGCAGATCGGAAGAGCACACGtct                                                                                >  1:4578671/1‑98 (MQ=255)
                aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CAGATCGGAAGAGCAcacggctg                                                                               >  1:1996445/1‑96 (MQ=255)
                aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CAGATCGGAAGAGCACACGtctg                                                                               >  1:1564667/1‑97 (MQ=255)
                aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CAGATCGGAAGAGCACACGtctg                                                                               >  1:1430711/1‑97 (MQ=255)
                aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CAGATCGGAAGAGCACACGtctg                                                                               >  1:4472963/1‑97 (MQ=255)
                aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CAGATCGGAAGAGCACACGtctg                                                                               >  1:3296623/1‑97 (MQ=255)
                aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CAGATCGGAAGAGCACACGtctg                                                                               >  1:1829136/1‑97 (MQ=255)
                aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TA‑CAGATCGGAAGAGCACACGtctg                                                                               >  1:2986972/1‑97 (MQ=255)
                aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑CC‑CAGATCGGAAGAGCACACGtctg                                                                               >  1:172635/1‑97 (MQ=255)
                aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑CC‑AAGATCGGAAGAGCACACGtctg                                                                               >  1:3918896/1‑97 (MQ=255)
                aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑CA‑CAGATCGGAAGAGCACACGtctg                                                                               >  1:1693166/1‑97 (MQ=255)
                aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTGCC‑TC‑CAGATCGGAAGAGCACACGtctg                                                                               >  1:3926859/1‑97 (MQ=255)
                aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTGCC‑TC‑CAGATCGGAAGAGCACACGtctg                                                                               >  1:4036408/1‑97 (MQ=255)
                aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTGCC‑TC‑CAGATCGGAAGAGCACACGtctg                                                                               >  1:4078536/1‑97 (MQ=255)
                aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTCCC‑TC‑CAGATCGGAAGAGCACACGtctg                                                                               >  1:5498007/1‑97 (MQ=255)
                aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTCCC‑TC‑CAGATCGGAAGAGCACACGtctg                                                                               >  1:5221148/1‑97 (MQ=255)
                aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTCCC‑TC‑AAGATCGGAAGAGCACACGtctg                                                                               >  1:2738732/1‑97 (MQ=255)
                aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTACC‑TC‑CAGATCGGAAGAGCACACGtctg                                                                               >  1:949807/1‑97 (MQ=255)
                aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTACC‑TC‑CAGATCGGAAGAGCACACGtctg                                                                               >  1:2203802/1‑97 (MQ=255)
                aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTACC‑TC‑CAGATCGGAAGAGCACACGtctg                                                                               >  1:2348158/1‑97 (MQ=255)
                aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTACC‑TC‑CAGATCGGAAGAGCACACGtctg                                                                               >  1:2640388/1‑97 (MQ=255)
                aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTACC‑CC‑CAGATCGGAAGAGCACACGtctg                                                                               >  1:2306763/1‑97 (MQ=255)
                aaaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTACC‑CC‑CAGATCGGAAGAGCACACGtctg                                                                               >  1:2737363/1‑97 (MQ=255)
                aaaCCTTTTAATAATAATTCTTTGGCATTAACATAGCCAATATAACCAACAATTCCACACATAACGACATTTCTC‑TC‑CAGACCGGAAGAGCACACGtctg                                                                               >  1:5472880/1‑97 (MQ=255)
                aaaCCTTTTAATAATAATTCTTTGGCAGTATCATACCCAATATAACCAACAATTCCACACATAACGACATTTGCC‑TC‑CAGATCGGAAGAGCACACGtctg                                                                               >  1:4685271/1‑97 (MQ=255)
                aaaCCCTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CAGATCGGAAGAGCACACGtctg                                                                               >  1:592675/1‑97 (MQ=255)
                aaaCCCTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑CC‑CAGATCGGAAGAGCACACGtctg                                                                               >  1:3270810/1‑97 (MQ=255)
                aaaCCCTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTGCC‑CC‑CAGATCGGAAGAGCAcacctgaa                                                                               >  1:4882356/1‑93 (MQ=255)
                 agccTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CAGATCGGAAGAGCACACGtctga                                                                              >  1:4008311/3‑96 (MQ=255)
                 agacctttAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑CC‑CAGATCGGAAGAGCACACGtctga                                                                              >  1:4712677/6‑96 (MQ=255)
                 aaCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTACC‑CC‑CAGATCGGAAGAGCACACGtctga                                                                              >  1:1794226/1‑96 (MQ=255)
                  aCCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTACC‑TC‑CAGATCGGAAGAGCACACGtctgaa                                                                             >  1:1615355/1‑95 (MQ=255)
                     ttttAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATg                                                                          <  1:4620036/100‑1 (MQ=255)
                      tttAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATgt                                                                         <  1:3533775/100‑2 (MQ=255)
                      tttAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGa                                                                         >  1:2481220/1‑100 (MQ=255)
                                atTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACTTTTTCC‑GC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCg                                                               <  1:1543542/100‑1 (MQ=255)
                                atTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTgggg                                                               <  1:1873749/100‑4 (MQ=255)
                                atTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCg                                                               <  1:3982962/100‑1 (MQ=255)
                                atTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCg                                                               <  1:4941512/100‑1 (MQ=255)
                                       ggCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAAttt                                                        <  1:100989/100‑1 (MQ=255)
                                       ggCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAAttt                                                        <  1:88171/100‑1 (MQ=255)
                                       ggCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAAttt                                                        <  1:1243078/100‑1 (MQ=255)
                                       ggCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAAttt                                                        <  1:727302/100‑1 (MQ=255)
                                       ggCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAAttt                                                        <  1:1653943/100‑1 (MQ=255)
                                       ggCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAAttt                                                        <  1:1391771/100‑1 (MQ=255)
                                       ggCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAAttt                                                        <  1:315061/100‑1 (MQ=255)
                                       ggCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAAttt                                                        <  1:441796/100‑1 (MQ=255)
                                       ggCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAAttt                                                        <  1:2848552/100‑1 (MQ=255)
                                       ggCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAAttt                                                        <  1:4105675/100‑1 (MQ=255)
                                       ggCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAAttt                                                        <  1:2813653/100‑1 (MQ=255)
                                       ggCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAAttt                                                        <  1:403549/100‑1 (MQ=255)
                                       ggCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAActt                                                        <  1:2173305/100‑1 (MQ=255)
                                       ggCATTATCATAGCCAATATAACCAACAACTCCACACATAACGACATTTTCC‑TC‑CATATTGGAATAGGACGCGTAAATTATGATTTATTGCCGATAAttt                                                        <  1:5378421/100‑1 (MQ=255)
                                       cttccgaTCTTAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTAATTGCCGATAAttt                                                        <  1:797669/94‑1 (MQ=255)
                                                   ggcAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAATTTAGATTGACAATc                                            >  1:3154269/3‑100 (MQ=255)
                                                        tataACCAACAATTCCACACATAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAATTTAGATTGACAATCTGCta                                       <  1:1973411/100‑2 (MQ=255)
                                                         ataACCAACAATTCCACACATAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAATTTAGATTGACAATCTGCttt                                      <  1:2361479/100‑1 (MQ=255)
                                                            aCCAACAATTCCACACATAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAATTTAGATTGACAATCTgactaatt                                   <  1:3686931/100‑8 (MQ=255)
                                                                      ccACACATAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAATTTAGATTGACAATCTGCTTTCATAATATAAATa                         >  1:3750666/1‑100 (MQ=255)
                                                                          acaTAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAATTTAGATTGACAATCTGCTTTCATAATATAAATAggcg                     <  1:4651173/100‑3 (MQ=255)
                                                                           caTAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAATTTAGATTGACAATCTGCTTTCATAATATAAATAGGAAc                    <  1:5467703/100‑1 (MQ=255)
                                                                           caTAACGACATTTTCC‑TC‑CATATTGGAATAGAACGCGTAAATTATGATTTATTGCCGGTAATTTTGATTGACAATCTGCTTTCATAATATAAATAGGAAc                    <  1:2286630/100‑1 (MQ=255)
                                                                                cGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAATTTAGATTGACAATCTGCTTTCATAATATAAATAGGAACATGCt               <  1:4832313/100‑1 (MQ=255)
                                                                                        tcc‑tc‑cATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAATTTAGATTGACAATCTGCTTTCATAATATAAATAGGAACATGCTATCATCGc       <  1:669564/100‑1 (MQ=255)
                                                                                        tcc‑tc‑cATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAATTTAGATTGACAATCTGCTTTCATAATATAAATAGGAACATGCTATCATCGc       <  1:5263273/100‑1 (MQ=255)
                                                                                             c‑cATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAATTTAGATTGACAATCTGCTTTCATAATATAAATAGGAACATGCTATCATCGCATTc   <  1:2385659/100‑1 (MQ=255)
                                                                                             c‑cATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAATTTAGATTGACAATCTGCTTTCATAATATAAATAGGAACATGCTATCATCGCATTc   <  1:4815959/100‑1 (MQ=255)
                                                                                               cATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAATTTAGATTGACAATCTGCTTTCATAATATAAATAGGAACATGCTATCATCGCacacg  <  1:3504618/100‑5 (MQ=255)
                                                                                               cATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAATTTAGATTGACAATCTGCTTTCATAATATAAATAGGAACATGCTATCATCGCATTCa  <  1:4209140/100‑1 (MQ=255)
                                                                                                    |                                                                                              
GTATTCTAATTTTTCTAAACCTTTTAATAATAATTCTTTGGCATTATCATAGCCAATATAACCAACAATTCCACACATAACGACATTTTCC‑TC‑CATATTGGAATAGTACGCGTAAATTATGATTTATTGCCGATAATTTAGATTGACAATCTGCTTTCATAATATAAATAGGAACATGCTATCATCGCATTCA  >  NC_007793/2271923‑2272115

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑