D32 :: BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_007793	1,609,096	0	T	C	63.6%	248.6 / inf	432	L141S (TTA→TCA)	SAUSA300_RS07945	AraC family transcriptional regulator
Reads supporting (aligned to +/- strand): ref base T (156/1); new base C (274/0); total (431/1)
Fisher's exact test for biased strand distribution p-value = 3.64e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.04e-12

Only 100 of 439 total aligned reads displayed.

CACCTATTCAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑T‑A‑C‑AGATTAGAAGAGACAGATGATATTTCATTGGTTGGATATGCACGATTTATAGACACTAAGTATTTGTCACATCCTTTTAATGTTCCGGATTTTTTAGA  >  NC_007793/1608997‑1609189

       tCAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCTA‑T‑AGC‑AGATCggaaga                                                                                         >  1:3583712/1‑100 (MQ=255)

       tCAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑TAA‑C‑AGATCggaaga                                                                                         >  1:1028442/1‑100 (MQ=255)

       tCAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑T‑A‑C‑AGATTAGAtgag                                                                                        >  1:2897976/1‑100 (MQ=255)

       tCAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑T‑A‑C‑AGATCGGAagag                                                                                        >  1:5409117/1‑100 (MQ=255)

       tCAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑T‑A‑C‑AGATCGGAagag                                                                                        >  1:2537712/1‑100 (MQ=255)

       acAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCT‑G‑A‑C‑AGATCGGAagag                                                                                        >  1:2300188/2‑100 (MQ=255)

        ctaGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑T‑A‑C‑AGATTAGAAgaga                                                                                       >  1:643978/3‑100 (MQ=255)

        cAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCT‑T‑A‑CTAGATCGGAagag                                                                                        >  1:2950330/1‑100 (MQ=255)

        cAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑TAA‑C‑AGATCGGAagag                                                                                        >  1:3618447/1‑100 (MQ=255)

        cAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑T‑A‑C‑AGATTAGAAgaga                                                                                       >  1:1120039/1‑100 (MQ=255)

        cAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑T‑A‑C‑AGATTAGAAgaga                                                                                       >  1:4877987/1‑100 (MQ=255)

        cAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑T‑A‑C‑AGATTAGAAgaga                                                                                       >  1:2353129/1‑100 (MQ=255)

        cAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑T‑A‑C‑AGATCGGAagagc                                                                                       >  1:1848258/1‑99 (MQ=255)

        cAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑C‑ACC‑AGATCGGAagag                                                                                        >  1:3762782/1‑100 (MQ=255)

        cAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑A‑T‑T‑AGATCGGAagagc                                                                                       >  1:224557/1‑99 (MQ=255)

        cAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATACA‑T‑A‑C‑AGATCGGAagagc                                                                                       >  1:5343050/1‑99 (MQ=255)

        cAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATACA‑T‑A‑C‑AGATCGGAagagc                                                                                       >  1:2774192/1‑99 (MQ=255)

        cAAGCCTCTACTAAAAAAGATGAATTACAAATCCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑T‑A‑C‑AGATCGGAagagc                                                                                       >  1:4962102/1‑99 (MQ=255)

        cAAGCCTCTACGAAAAAAGAGGAATGACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑T‑A‑C‑AGATTAGAGgaga                                                                                       >  1:1541709/1‑100 (MQ=255)

         taGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCT‑C‑A‑C‑AGATCGGAagagca                                                                                      >  1:5013147/2‑98 (MQ=255)

         taGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑C‑G‑C‑AGATCGGAagagca                                                                                      >  1:4301881/2‑98 (MQ=255)

         taGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑C‑C‑C‑AGATCGGAagagca                                                                                      >  1:1649421/2‑98 (MQ=255)

         taGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑C‑A‑C‑AGATCGGAagagca                                                                                      >  1:1390226/2‑98 (MQ=255)

         caGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCATT‑A‑C‑AGATCGGAagagc                                                                                       >  1:2046195/2‑99 (MQ=255)

         caGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑T‑A‑C‑AGATCGGAagagca                                                                                      >  1:3792837/2‑98 (MQ=255)

         caGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTACCCA‑‑‑A‑T‑AGATCGGAagagcac                                                                                     >  1:1456538/2‑97 (MQ=255)

         atgCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑C‑A‑C‑AGATCGGAagagca                                                                                      >  1:356583/3‑98 (MQ=255)

         aaGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTGTCAACTACTGAGAGAGCACCTTATCCA‑T‑A‑C‑AGATTagtagacag                                                                                      >  1:2481890/1‑97 (MQ=255)

         aaGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCTA‑T‑A‑C‑AGATCGGAagagca                                                                                      >  1:4472611/1‑98 (MQ=255)

         aaGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑TGC‑C‑AGATCGGAagagc                                                                                       >  1:2661951/1‑99 (MQ=255)

         aaGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑T‑T‑C‑AGATCGGAagagca                                                                                      >  1:3596536/1‑98 (MQ=255)

         aaGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑T‑A‑C‑AGATCGGAagagca                                                                                      >  1:4850767/1‑98 (MQ=255)

          aGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCT‑C‑A‑C‑AGATCGGAagagcac                                                                                     >  1:2583405/1‑97 (MQ=255)

          aGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑T‑ATC‑AGATCGGAagagca                                                                                      >  1:2845400/1‑98 (MQ=255)

          aGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑T‑A‑C‑AGATCGGAagagcac                                                                                     >  1:5367914/1‑97 (MQ=255)

          aGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑C‑AGC‑AGATCGGAagagca                                                                                      >  1:3068742/1‑98 (MQ=255)

          aGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑A‑G‑A‑AGATCGGAagagcac                                                                                     >  1:820276/1‑97 (MQ=255)

           cccTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCTA‑T‑A‑C‑AGATCGGAagagcaca                                                                                    >  1:4389999/2‑96 (MQ=255)

            ccTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑T‑A‑C‑AGATTAGAGGAGACAga                                                                                   >  1:5167297/1‑100 (MQ=255)

            ccTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑T‑A‑C‑AGATTAGAAGAGACAga                                                                                   >  1:5048692/1‑100 (MQ=255)

             ctctACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCC‑A‑A‑C‑AGATCGGAagagcacacg                                                                                  >  1:5510178/1‑94 (MQ=255)

             acctactaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑C‑ACC‑AGATCGGAagagcacac                                                                                   >  1:1191454/3‑95 (MQ=255)

               ctactaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCG‑T‑A‑C‑AGATCGGAagagcacacgtc                                                                                >  1:1937204/1‑92 (MQ=255)

               ctactaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑T‑A‑C‑AGATTAGAAGAGACAgatga                                                                                >  1:4568551/1‑100 (MQ=255)

               ctactaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑T‑A‑C‑AGATCGGAagagcacacgtc                                                                                >  1:1619990/1‑92 (MQ=255)

               ctactaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑T‑A‑C‑AGATCGGAagagcacacgtc                                                                                >  1:3436722/1‑92 (MQ=255)

               ctactaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑A‑A‑C‑AGATCGGAagagcacacgtc                                                                                >  1:2999377/1‑92 (MQ=255)

               ctactaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCAA‑T‑A‑C‑AGATCGGAagagcacacgtc                                                                                >  1:4746178/1‑92 (MQ=255)

               ctactaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATACA‑T‑A‑C‑AGATCGGAagagcacacgtc                                                                                >  1:2608564/1‑92 (MQ=255)

                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATTCG‑T‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:4034482/1‑90 (MQ=255)

                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATTCA‑T‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:5120066/1‑90 (MQ=255)

                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATTCA‑T‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:4137206/1‑90 (MQ=255)

                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATGCA‑T‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:3643013/1‑90 (MQ=255)

                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATGCA‑C‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:3343932/1‑90 (MQ=255)

                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCGA‑T‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:4908428/1‑90 (MQ=255)

                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCG‑T‑ATC‑AGATCGGAagagcacacgtct                                                                               >  1:2749962/1‑91 (MQ=255)

                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCG‑T‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:3252507/1‑90 (MQ=255)

                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCG‑G‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:5272012/1‑90 (MQ=255)

                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCC‑T‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:889744/1‑90 (MQ=255)

                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑TGC‑C‑AGATCGGAagagcacacgtct                                                                               >  1:1245002/1‑91 (MQ=255)

                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑T‑T‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:3115257/1‑90 (MQ=255)

                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑T‑A‑T‑AGATCGGAagagcacacgtctg                                                                              >  1:4248486/1‑90 (MQ=255)

                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑T‑A‑CAAGATCGGAagagcacacgtct                                                                               >  1:2670067/1‑91 (MQ=255)

                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑T‑A‑C‑AGATTAGAAgagatcggaagag                                                                              >  1:3725023/1‑91 (MQ=255)

                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑T‑A‑C‑AGATTAGAAGAGACAGATGata                                                                              >  1:1999313/1‑100 (MQ=255)

                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑T‑A‑C‑AGATTAGAAGAGACAGATGata                                                                              >  1:722199/1‑100 (MQ=255)

                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑T‑A‑C‑AGATTAGAAGAGACAGATGata                                                                              >  1:784406/1‑100 (MQ=255)

                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑T‑A‑C‑AGATTAGAAGAGACAGATGata                                                                              >  1:4346069/1‑100 (MQ=255)

                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑T‑A‑C‑AGATTAGAAGAGACAGATGata                                                                              >  1:1700847/1‑100 (MQ=255)

                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑T‑A‑C‑AGATTAGAAGAGACAGATGata                                                                              >  1:5241235/1‑100 (MQ=255)

                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑T‑A‑C‑AGATTAGAAGAGACAGATGata                                                                              >  1:2723153/1‑100 (MQ=255)

                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑T‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:1437954/1‑90 (MQ=255)

                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑T‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:5471461/1‑90 (MQ=255)

                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑T‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:3369629/1‑90 (MQ=255)

                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑T‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:3465398/1‑90 (MQ=255)

                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑T‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:4722821/1‑90 (MQ=255)

                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑T‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:4681990/1‑90 (MQ=255)

                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑T‑A‑C‑AGATCGGAagagcacacggctg                                                                              >  1:1279626/1‑90 (MQ=255)

                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑A‑C‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:3021131/1‑90 (MQ=255)

                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTAACCA‑C‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:3853783/1‑90 (MQ=255)

                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTAACAACTACTGAGAGAGCACCTTATCCA‑T‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:3672157/1‑90 (MQ=255)

                 actaAAAAAGATGAATTACAAATTCAAGAGCGATTAGATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑C‑A‑C‑AGATCGGAagagcacacgtctg                                                                              >  1:4492332/1‑90 (MQ=255)

                  ctaAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑T‑A‑C‑AGATTAGAAGAGACAGATGatat                                                                             >  1:1069663/1‑100 (MQ=255)

                                                                  cAACTACTGAGAGAGCACCTTATCCA‑T‑A‑C‑AGATTAGAAGAGACAGATGATATTTCATTGGTTGGATATGCACGATTTATAGACACTAAGTATTTGTcaca                             >  1:3194316/1‑100 (MQ=255)

                                                                   aaCTACTGAGAGAGCACCTTATCCA‑T‑A‑C‑AGATTAGAAGAGACAGATGATATTTCATTGGTTGGATATGCACGATTTATAGACACTAAGTATTTGTCACAt                            >  1:4813954/1‑100 (MQ=255)

                                                                       actGAGATAGCACCTTATCCA‑T‑A‑C‑AGATTAGAAGAGACAGATGATATTTCATTGGTTGGATATGCACGATTTATAGACACTAAGTATTTGTCACATCCtt                        >  1:1350399/1‑100 (MQ=255)

                                                                       actGAGAGAGCACCTTATCCA‑T‑A‑C‑AGATTAGAAGAGACAGATGATATTTCATTGGTTGGATATGCACGATTTATAGACACTAAGTATTTGTCACATCCtt                        >  1:915204/1‑100 (MQ=255)

                                                                       actGAGAGAGCACCTTATCCA‑T‑A‑C‑AGATTAGAAGAGACAGATGATATTTCATTGGTTGGATATGCACGATTTATAGACACTAAGTATTTGTCACATCCtt                        >  1:4628297/1‑100 (MQ=255)

                                                                                      tATCCA‑T‑A‑C‑AGATTAGAAGAGACAGATGATATTTCATTGGTTGGATATGCACGATTTATAGACACTAAGTATTTGTCACATCCTTTTAATGTTCCGGAtt         >  1:3704490/1‑100 (MQ=255)

                                                                                      tATCCA‑T‑A‑C‑AGATTAGAAGAGACAGATGATATTTCATTGGTTGGATATGCACGATTTATAGACACTAAGTATTTGTCACATCCTTTTAATGTTCCGGAtt         >  1:4600780/1‑100 (MQ=255)

                                                                                       aTCCA‑T‑A‑C‑AGATTAGAAGAGACAGATGATATTTCATTGGTTGGATATGCACGATTTATAGACACTAAGTATTTGTCACATCCTTTTAATGTTCCGGAttt        >  1:2862971/1‑100 (MQ=255)

                                                                                           tct‑A‑C‑AGATTAGAAGAGACAGATGATATTTCATTGGTTGGATATGCACGATTTATAGACACTAAGTATTTGTCACATCCTTTTAATGTTCCGGAtttttt     >  1:5293076/3‑100 (MQ=255)

                                                                                            ct‑A‑C‑AGATTAGAAGAGACAGATGATATTTCATTGGTTGGATATGCACGATTTATAGACACTAAGTATTTGTCACATCCTTTTAATGTTCCGGAttagatc    >  1:178904/2‑95 (MQ=255)

                                                                                             t‑A‑C‑AGATTAGAAGAGACAGATGATATTTCATTGGTTGGATATGCACGATTTATAGACACTAAGTATTTGTCACATCCTTTTAATGTTCCGGaagatcgga   >  1:1731372/1‑92 (MQ=255)

                                                                                             t‑A‑C‑AGATTAGAAGAGACAGATGATATTTCATTGGTTGGATATGCACGATTTATAGACACTAAGTATTTGTCACATCCTTTTAATGTTCCGGAtagatcgg   >  1:3961478/1‑93 (MQ=255)

                                                                                             t‑A‑C‑AGATTAGAAGAGACAGATGATATTTCATTGGTTGGATATGCACGATTTATAGACACTAAGTATTTGTCACATCCTTTTAATGTCCCAGAtcggaaga   >  1:5549189/1‑93 (MQ=255)

                                                                                               a‑C‑AGATTAGAAGAGACAGATGATATTTCATTGGTTGGATATGCACGATTTATAGACACTAAGTGTTTGTCACATCCTTTTAATGTTCCGGATTTTTTaga  >  1:3945070/1‑100 (MQ=255)

                                                                                               a‑C‑AGATTAGAAGAGACAGATGATATTTCATTGGTTGGATATGCACGATTTATAGACACTAAGTATTTGTCACATCCTTTTAATGTTCCggccagatcgga  >  1:3301208/1‑90 (MQ=255)

                                                                                               a‑C‑AGATTAGAAGAGACAGATGATATTTCATTGGTTGGATATGCACGATTTATAGACACTAAGTATTTGTCACATCCTTTTAATGTTCCGGATTTTTTaga  >  1:2451141/1‑100 (MQ=255)

                                                                                               a‑C‑AGATTAGAAGAGACAGATGATATTTCATTGGTTGGATATGCACGATTTATAGACACTAAGTATTTGTCACATCCTTTTAATGTTCCGGATTTTTTaga  >  1:2114450/1‑100 (MQ=255)

CACCTATTCAAGCCTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCTTATCCA‑T‑A‑C‑AGATTAGAAGAGACAGATGATATTTCATTGGTTGGATATGCACGATTTATAGACACTAAGTATTTGTCACATCCTTTTAATGTTCCGGATTTTTTAGA  >  NC_007793/1608997‑1609189

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`