mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 366 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 613,711 | 0 | C | . | 79.2% | 21.5 / 40.2 | 48 | coding (2565/2844 nt) | SAUSA300_RS02915 | serine‑aspartate repeat‑containing protein C |
| * | NC_007793 | 895,247 | 0 | T | A | 76.9% | 22.7 / 2.4 | 13 | intergenic (‑118/‑916) | SAUSA300_RS04395/SAUSA300_RS04400 | hypothetical protein/hypothetical protein |
| * | NC_007793 | 895,260 | 0 | G | A | 76.9% | 17.7 / 0.6 | 13 | intergenic (‑131/‑903) | SAUSA300_RS04395/SAUSA300_RS04400 | hypothetical protein/hypothetical protein |
| * | NC_007793 | 2,113,235 | 0 | C | A | 76.5% | 61.8 / 17.0 | 34 | E44* (GAG→TAG) | SAUSA300_RS10710 | acetyltransferase |
| * | NC_007793 | 895,240 | 0 | C | A | 75.0% | 17.8 / 3.5 | 12 | intergenic (‑111/‑923) | SAUSA300_RS04395/SAUSA300_RS04400 | hypothetical protein/hypothetical protein |
| * | NC_007793 | 894,996 | 0 | T | C | 74.4% | 556.3 / 212.4 | 383 | N45S (AAC→AGC) | SAUSA300_RS04395 | hypothetical protein |
| * | NC_007793 | 895,012 | 0 | C | A | 73.8% | 568.0 / 235.6 | 302 | E40* (GAG→TAG) | SAUSA300_RS04395 | hypothetical protein |
| * | NC_007793 | 2,249,009 | 0 | A | T | 73.7% | 18.0 / 8.6 | 19 | intergenic (‑396/+3) | SAUSA300_RS11480/SAUSA300_RS11485 | hypothetical protein/ATP‑grasp domain‑containing protein |
| * | NC_007793 | 895,011 | 0 | T | G | 73.6% | 633.6 / 223.4 | 303 | E40A (GAG→GCG) | SAUSA300_RS04395 | hypothetical protein |
| * | NC_007793 | 895,009 | 0 | G | C | 73.4% | 580.9 / 254.8 | 304 | Q41E (CAA→GAA) | SAUSA300_RS04395 | hypothetical protein |
| * | NC_007793 | 895,010 | 0 | C | A | 73.4% | 568.2 / 234.3 | 304 | E40D (GAG→GAT) | SAUSA300_RS04395 | hypothetical protein |
| * | NC_007793 | 895,220 | 0 | G | T | 73.3% | 18.8 / 7.8 | 15 | intergenic (‑91/‑943) | SAUSA300_RS04395/SAUSA300_RS04400 | hypothetical protein/hypothetical protein |
| * | NC_007793 | 895,221 | 0 | A | C | 73.3% | 21.4 / 7.1 | 15 | intergenic (‑92/‑942) | SAUSA300_RS04395/SAUSA300_RS04400 | hypothetical protein/hypothetical protein |
| * | NC_007793 | 895,222 | 0 | T | C | 73.3% | 13.4 / 4.5 | 15 | intergenic (‑93/‑941) | SAUSA300_RS04395/SAUSA300_RS04400 | hypothetical protein/hypothetical protein |
| * | NC_007793 | 2,411,452 | 0 | T | C | 73.3% | 13.6 / 3.8 | 15 | S36S (TCT→TCC) | SAUSA300_RS12395 | hypothetical protein |
| * | NC_007793 | 2,411,453 | 0 | T | G | 73.3% | 21.2 / 6.6 | 15 | Y37D (TAT→GAT) | SAUSA300_RS12395 | hypothetical protein |
| * | NC_007793 | 503,675 | 0 | A | T | 72.2% | 25.1 / 9.1 | 20 | noncoding (25/93 nt) | SAUSA300_RS02390 | tRNA‑Ser |
| * | NC_007793 | 1,929,062 | 0 | G | A | 72.2% | 21.0 / 4.1 | 18 | intergenic (‑148/‑273) | SAUSA300_RS09560/SAUSA300_RS09565 | transposase/hypothetical protein |
| * | NC_007793 | 2,113,184 | 0 | A | G | 70.4% | 20.6 / 14.5 | 28 | F61L (TTT→CTT) | SAUSA300_RS10710 | acetyltransferase |
| * | NC_007793 | 2,113,197 | 0 | A | G | 70.4% | 23.7 / 14.3 | 27 | L56L (CTT→CTC) | SAUSA300_RS10710 | acetyltransferase |