D15 :: BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_007793	894,996	0	T	C	74.4%	556.3 / 212.4	383	N45S (AAC→AGC)	SAUSA300_RS04395	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (3/95); new base C (1/284); total (4/379)
Fisher's exact test for biased strand distribution p-value = 5.32e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.42e-01

Only 100 of 397 total aligned reads displayed.

CCATTTGCTAATTTATAAGTCACTTTGACATTTTCATTATCTGTTTTATCGATAATATTCGCTTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGTTATCTGTCGTTTGCTCAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTACTGTTGTTAAAACTAAAGCACTTG  >  NC_007793/894897‑895095

ccATTTGCTAATTTATAAGTCACTTTGACATTTTCATTATCTGTTTTATCGATAATATTCGCTTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGt                                                                                                     <  1:246322/100‑1 (MQ=255)

 tgtttGTTAATTTATAAGTCACTTTGACATTTTCATTATCTGTTTTATCGATAATATTCGCTTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGtt                                                                                                    <  1:5024887/98‑1 (MQ=255)

 cATTTGCTAATTTATAAGTCACTTTGACATTTTCATTATCTGTTTTATCGATAATATTCGCTTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGtt                                                                                                    <  1:5495002/100‑1 (MQ=255)

  aTTTGCTAATTTATAAGTCACTTTGACATTTTCATTATCTGTTTTATCGATAATATTCGCTTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGttt                                                                                                   <  1:1300094/100‑2 (MQ=255)

  aTTTGCTAATTTATAAGTCACTTTGACATTTTCATTATCTGTTTTATCGATAATATTCGCTTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGTTa                                                                                                   <  1:3001117/100‑1 (MQ=255)

   ttttttAATTTATATTTTACTTTAATCGTTTCTTTGTCTGTTTTATCAATGATATTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTaa                                                                                                  <  1:1759772/95‑2 (MQ=255)

   ttttttAATTTATATTTTACTTTAATCGTTTCTTTGTCTGTTTTATCAATGATATTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTAt                                                                                                  <  1:646222/95‑1 (MQ=255)

   ttttttAATTTATATTTTACTTTAATCGTTTCTTTGTCTGTTTTATCAATGATATTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTAt                                                                                                  <  1:3230732/95‑1 (MQ=255)

   tattttAATTTATATTTTACTTTAATCGTTTCTTTGTCTGTTTTAT‑AATGATATTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTAtt                                                                                                 <  1:5143328/95‑2 (MQ=255)

    tttttAATTTATATTTTACTTTAATCGTTTCTTTGTCTGTTTTATCAATGATATTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTATc                                                                                                 <  1:1027395/96‑1 (MQ=255)

    ttGCTAATTTATAAGTCACTTTGACATTTTCATTATCTGTTTTATCGATAATATTCGCTTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGTTATc                                                                                                 <  1:2866298/100‑1 (MQ=255)

     ttttAATTTATATTTTACTTTAATCGTTTCTTTGTCTGTTTTATCAATGATATTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTAttt                                                                                                <  1:5772590/97‑3 (MQ=255)

      tttAATTTATATTTTACTTTAATCGTTTCTTTGTCTGTTTTATCAATGATATTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTATcag                                                                                               <  1:3881618/98‑3 (MQ=255)

       ttAATTTATATTTTACTTTAATCGTTTCTTTGTCTGTTTTATCAATGATATTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTATCTgg                                                                                              <  1:3821775/99‑2 (MQ=255)

       ttAATTTATATTTTACTTTAATCGTTTCTTTGTCTGTTTTATCAATGATATTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTATCTGt                                                                                              <  1:4570975/99‑1 (MQ=255)

        tAATTTATATTTTACTTTAATCGTTTCTTTGTCTGTTTTATCAATGATATTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTATccagt                                                                                             <  1:1533516/100‑5 (MQ=255)

        tAATTTATATTTTACTTTAATCGTTTCTTTGTCTGTTTTATCAATGATATTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTATCTGtt                                                                                             <  1:96869/100‑2 (MQ=255)

        tAATTTATATTTTACTTTAATCGTTTCTTTGTCTGTTTTATCAATGATATTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTATCTGtt                                                                                             <  1:5201160/100‑2 (MQ=255)

        tAATTTATATTTTACTTTAATCGTTTCTTTGTCTGTTTTATCAATGATATTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTATCTGtt                                                                                             <  1:3766359/100‑2 (MQ=255)

        tAATTTATATTTTACTTTAATCGTTTCTTTGTCTGTTTTATCAATGATATTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTATCTGtt                                                                                             <  1:3358241/100‑2 (MQ=255)

        tAATTTATATTTTACTTTAATCGTTTCTTTGTCTGTTTTATCAATGATATTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTATCTGtt                                                                                             <  1:3322682/100‑2 (MQ=255)

        tAATTTATATTTTACTTTAATCGTTTCTTTGTCTGTTTTATCAATGATATTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTATCTGtt                                                                                             <  1:695170/100‑2 (MQ=255)

        tAATTTATAAGTCACTTTGACATTTTCATTATCTGTTTTATCGATAATATTCGCTTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGTTATCTgag                                                                                             <  1:3049707/100‑3 (MQ=255)

        tAATTTATAAGTCACTTTGACATTTTCATTATCTGTTTTATCGATAATATTCGCTTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGTTATCTGtg                                                                                             <  1:6139864/100‑2 (MQ=255)

         aaTTTATATTTTACTTTAATCGTTTCTTTGTCTGTTTTATCAATGATATTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTATCTGttg                                                                                            <  1:5455939/100‑3 (MQ=255)

          aTTTATAAGTCACTTTGACATTTTCATTATCTGTTTTATCGATAATATTCGCTTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGTTATCTgggca                                                                                           <  1:4250562/100‑5 (MQ=255)

           tttATAAGTCACTTTGACATTTTCATTATCTGTTTTATCGATAATATTCGCTTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGTTATCTGTCGtt                                                                                          <  1:5682668/100‑1 (MQ=255)

           tttATAAGTCACTTTGACATTTTCATTATCTGTTTTATCGATAATATTCGCTTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGTTATCTGTCGtt                                                                                          <  1:1476823/100‑1 (MQ=255)

           tttATAAGTCACTTTGACATTTTCATTATCTGTTTTATCGATAATATTCGCTTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGTTATCTGTCGtt                                                                                          <  1:5413755/100‑1 (MQ=255)

           tttATAAGTCACTTTGACATTTTCATTATCTGTTTTATCGATAATATTCGCTTCCTTTAAAGCGTCTCTTACATTTTTCCACAATTCGTTATCTGTCGtt                                                                                          <  1:30692/100‑1 (MQ=255)

            ttATAAGTCACTTTGACATTTTCATTATCTGTTTTATCGATAATATTCGCTTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGTTATCTGTCgggc                                                                                         <  1:255750/100‑4 (MQ=255)

            ttATAAGTCACTTTGACATTTTCATTATCTGTTTTATCGATAATATTCGCTTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGTTATCTGTCGttg                                                                                         <  1:4704708/100‑2 (MQ=255)

            ttATAAGTCACTTTGACATTTTCATTATCTGTTTTATCGATAATATTCGCTTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGTTATCTGTCGttc                                                                                         <  1:3076144/100‑2 (MQ=255)

             tcttccgatcTTTGACCTTCTCATTATCTGTTTTATCGATAATATTCGCTTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGTTATCTGTCGTTTg                                                                                        <  1:5304721/91‑1 (MQ=255)

                    cACTTTGACATTTTCATTATCTGTTTTATCGATAATATTCGCTTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGTTATCTGTCGTTTGCTCAGCt                                                                                 <  1:2732134/100‑1 (MQ=255)

                     aCTTTGACATTTTCATTATCTGTTTTATCGATAATATTCGCTTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGTTATCTGTCGTTTGCTCAGCtt                                                                                <  1:4483651/100‑1 (MQ=255)

                         tGACATTTTCATTATCTGTTTTATCGATAATATTCGCTTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGTTATCTGTCGTTTGCTCAGCTTTTGc                                                                            <  1:5359192/100‑1 (MQ=255)

                          gACATTTTCATTATCTGTTTTATCGATAATATTCGCTTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGTTATCTGTCGTTTGCTCAGCTTTTGCa                                                                           <  1:2533971/100‑1 (MQ=255)

                           aCATTTTCATTATCTGTTTTATCGATAATATTCGCTTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGTTATCTGTCGTTTGCTCAGCTTTTGCaa                                                                          <  1:6077945/100‑1 (MQ=255)

                            tcgtttCTTTGTCTGTTTTATCAATGATATTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAAc                                                                         <  1:4453881/97‑1 (MQ=255)

                                 ttccgaTCTG‑TTTATCAATGATATTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGttatt                                                                   <  1:3446088/95‑1 (MQ=255)

                                  cATTATCTGTTTTATCGATAATATTCGCTTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGTTATCTGTCGTTTGCTCAGCTTTTGCAACGttatg                                                                   <  1:2230750/100‑2 (MQ=255)

                                       tCTGTTTTATCAATGATATTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATaa                                                              <  1:1402010/100‑2 (MQ=255)

                                        cTGTTTTATCAATGATATTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATAcc                                                             <  1:5884469/100‑1 (MQ=255)

                                           ttttATCAATGATATTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCAtt                                                          <  1:2051271/100‑1 (MQ=255)

                                           gtttATCAATGATATTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCAtt                                                          <  1:1084135/99‑1 (MQ=255)

                                            tttATCAATGATATTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCAtga                                                         <  1:4076999/100‑3 (MQ=255)

                                                   ataataTTCGCTTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGTTATCTGTCGTTTGCTCAGCTTTTGCAACGTTATTAATACCATTATAATTTg                                                  <  1:3169623/100‑1 (MQ=255)

                                                    tgatatTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTga                                                 <  1:6225780/98‑1 (MQ=255)

                                                    tgatatTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTga                                                 <  1:4282831/98‑1 (MQ=255)

                                                    tgatatTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTga                                                 <  1:3528395/98‑1 (MQ=255)

                                                    tgatatTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATCCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTga                                                 <  1:5825819/98‑1 (MQ=255)

                                                      atatTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTgaag                                               <  1:916842/100‑1 (MQ=255)

                                                      atatTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATCTgaag                                               <  1:2263551/100‑1 (MQ=255)

                                                      atatTCGCTTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGTTATCTGTCGTTTGCTCAGCTTTTGCAACGTTATTAATACCATTATAATTTgaag                                               <  1:3122915/100‑1 (MQ=255)

                                                      atatTCGCTTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGTTATCTGGCGTTTGCTCAGCTTTTGCAACGTTATTAATACCATTATAATTTgaag                                               <  1:1339640/100‑1 (MQ=255)

                                                       tatTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTgaaga                                              <  1:4922317/100‑1 (MQ=255)

                                                       tatTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTgaaga                                              <  1:1579445/100‑1 (MQ=255)

                                                                    tAAAGCGTCTCTTACATTTTTCCACAATTCGTTATCTGTCGTTTGCTCAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCt                                 <  1:4760335/100‑1 (MQ=255)

                                                                     aaaGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAATGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTg                                <  1:5959633/100‑1 (MQ=255)

                                                                     aaaGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTg                                <  1:357215/100‑1 (MQ=255)

                                                                     aaaGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTg                                <  1:1607909/100‑1 (MQ=255)

                                                                     aaaGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTg                                <  1:5076981/100‑1 (MQ=255)

                                                                      aaGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGa                               <  1:3653309/100‑1 (MQ=255)

                                                                      aaGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGa                               <  1:2153244/100‑1 (MQ=255)

                                                                          gTCTCTTACATTTTTCCACAATTCGTTATCTGTCGTTTGCTCAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCt                           <  1:1153365/100‑1 (MQ=255)

                                                                          gTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCt                           <  1:2368315/100‑1 (MQ=255)

                                                                          gTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCt                           <  1:2108732/100‑1 (MQ=255)

                                                                           tctcTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTa                          <  1:6179976/100‑1 (MQ=255)

                                                                           tctcTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTa                          <  1:413009/100‑1 (MQ=255)

                                                                           tctcTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTa                          <  1:3304931/100‑1 (MQ=255)

                                                                           tctcTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTa                          <  1:3459889/100‑1 (MQ=255)

                                                                            ctctTATATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATTCCATTATAATTTGAAGAAGAATGAAAACCTGAACCTAc                         <  1:2657321/100‑1 (MQ=255)

                                                                            ctctTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTag                         <  1:5662000/100‑2 (MQ=255)

                                                                             ttccgatcttttCCACAATTCGTTATCTGTCGTTTGCTCAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTAcg                        <  1:5616394/92‑2 (MQ=255)

                                                                             tctTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAGCCTACt                        <  1:5864917/100‑1 (MQ=255)

                                                                             tctTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTAca                        <  1:27641/100‑2 (MQ=255)

                                                                             tctTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTACAATTTGAAGAAGAATGAAAACCTGAACCTACt                        <  1:1699659/100‑1 (MQ=255)

                                                                              cttccgatcttCCATGATTCGTTATCTGTCGTTTGCTCAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTACtg                       <  1:85246/91‑1 (MQ=255)

                                                                               ttACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTACtgt                      <  1:5637885/100‑1 (MQ=255)

                                                                               ttACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTACtgt                      <  1:5994438/100‑1 (MQ=255)

                                                                               ttACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTACtgc                      <  1:4828156/100‑2 (MQ=255)

                                                                               ttACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATCATAATTTGAAGAAGAATGAAAACCTGAACCTACtgt                      <  1:3915459/100‑1 (MQ=255)

                                                                               ttACATTTTT‑CACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTACtgtg                     <  1:1002435/100‑2 (MQ=255)

                                                                                ttccgatctCCACAATTCGTTATCTGTCGTTTGCTCAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTACtgta                     <  1:4197836/92‑2 (MQ=255)

                                                                                tACATTTTTCCACAATTCGTTATCTGTCGTTTGCTCAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTACtgtt                     <  1:2887758/100‑1 (MQ=255)

                                                                                tACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTACtgtt                     <  1:3485864/100‑1 (MQ=255)

                                                                                tACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTACtgtt                     <  1:2039904/100‑1 (MQ=255)

                                                                                 gatcttttCCGCAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTagcagtt                    <  1:5255635/96‑7 (MQ=255)

                                                                                 atctttttCCACAATTCGTTATCTGTCGTTTGCTCAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTACtgttt                    <  1:6046587/97‑2 (MQ=255)

                                                                                 aCATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTACtgttg                    <  1:1234682/100‑1 (MQ=255)

                                                                                  cATTTTTCCACAATTCGTTATCTGTCGTTTGCTCAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTACtgttaa                   <  1:802346/100‑3 (MQ=255)

                                                                                  cATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTACtgttgt                   <  1:1882698/100‑1 (MQ=255)

                                                                                   gatcttCCTCAATTCGTTATCTGTCGTTTGCTCAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTACTgttgtt                  <  1:4861394/96‑1 (MQ=255)

                                                                                   gatcttCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTACTgttgtt                  <  1:4332874/96‑1 (MQ=255)

                                                                                   atctggccACAATTCGTTATCTGTCGTTTGCTCATCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTACTgttgtt                  <  1:4013494/94‑1 (MQ=255)

                                                                                   aTTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATCCCATTATAATTTGAAGAAGAATGAAAACCTGAACCTACtgttgta                  <  1:1807612/100‑2 (MQ=255)

                                                                                    tttttCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTACTGTTGTTa                 <  1:3967077/100‑1 (MQ=255)

                                                                                    tttttCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTACTGTTGTTa                 <  1:1641078/100‑1 (MQ=255)

                                                                                         ccACAATTCGTTATCTGTCGTTTGCTCAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTACTGTTGTTAAAACt            >  1:3416727/1‑100 (MQ=255)

CCATTTGCTAATTTATAAGTCACTTTGACATTTTCATTATCTGTTTTATCGATAATATTCGCTTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGTTATCTGTCGTTTGCTCAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTACTGTTGTTAAAACTAAAGCACTTG  >  NC_007793/894897‑895095

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`