| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 613,711 | 0 | C | . | 79.2% | 21.5 / 40.2 | 48 | coding (2565/2844 nt) | SAUSA300_RS02915 | serine‑aspartate repeat‑containing protein C |
| Reads supporting (aligned to +/- strand): ref base C (6/4); new base . (38/0); total (44/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.08e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.91e-02 | |||||||||||
CAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGAC‑TCAGACTCGGATAGCGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGATTCGGACTCAGACAACGACTCAGATTCAGATAGCGATTCAGATTCAGA > NC_007793/613617‑613806 | cagattcagacGGCGATTCAGATTCAGATAGCGATTCAGATTCAGACAG‑‑‑‑‑‑AGACTCAGATAGTGATTCAGACTCAGATAGCGAC‑CCAGA‑TCGGaagagcac > 1:921988/1‑93 (MQ=21)cagactcagacAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGCC‑CCAGA‑TCGGaa > 1:1170529/1‑99 (MQ=14)cagactcagacAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACCCAGATAGCGAC‑TCAGACTCGGa > 1:5107481/1‑100 (MQ=255) aacaggggacAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGAC‑ACAGA‑TCGGaag > 1:4820596/8‑98 (MQ=14) gatggggacAGCGATTCAGACTCAGATAGCGACTCAGACTCGGATAGCGACTCGGATTCAGATAGCGACTCAGACTCAGATAGTGAC‑TCAGA‑TCGGaaga > 1:594072/7‑97 (MQ=17) gtgcagacAGTGATTCAGATTCAGACAGCGACTCAGACTCGGATAGCGACTCAGACTCAGACAGCGATTCAGACTCAGATAGCGAC‑CCAGA‑TCGGaagag > 1:560348/4‑96 (MQ=14) ttcagacAGTGATTCAGATTCAGACAGCGACTCAGACTCGGATAGCGACTCAGACTCAGACAGCGATTCAGACTCAGATAGCG‑C‑TCAGA‑TCGGaagagca > 1:1952147/2‑94 (MQ=17) tccagacAGCGACTCAGACTCGGATAGCGATTCAGATTCAGATAGCGATTCGGATTCAGACAGTGATTCAGGTTCAGACAGTAAC‑TCAGA‑TCGGaagagc > 1:2923625/3‑95 (MQ=14) tcagacAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGAC‑GCAGA‑TCGGaagagca > 1:4531161/1‑94 (MQ=14) ccagacAGTGATTCAGATTCAGACAGCGACTCAGACTCGGATAGCGACTCAGACTCAGACAGCGATTCAGACTCAGATAGCGAC‑CCAGA‑TCGGaagagca > 1:3677918/2‑94 (MQ=14) cagatAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGAC‑TCAGA‑TCGGaagagcac > 1:838350/1‑93 (MQ=14) cagacagcgactcagactcagacagcgactcagactCAGATAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGTGAC‑TCAGA‑TCGGaagagcac > 1:669687/1‑93 (MQ=14) cagacagcgactcagactcagacagcgactcagactCAGATAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGAC‑TCAGA‑TCGGaagagcac > 1:534330/1‑93 (MQ=14) cagacAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGAC‑TCAGACTCGGATAGCga > 1:3140241/1‑100 (MQ=255) cagacAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGAC‑ACAGA‑TCGGaagagcac > 1:5209610/1‑93 (MQ=14) cagacAGTGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGCGAC‑TCAGA‑TCGGaagagcac > 1:4450070/1‑93 (MQ=17) cagacAGCGATTCAGATTCAGACAGCGACTCAGACTCGGATAGCGATTCAGATTCAGATAGCGATTCGGATTCAGACAGGGAT‑TCAGA‑TCGGaagagcac > 1:4585515/1‑93 (MQ=17) cagacAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGCGCC‑TCAGA‑TCGGaagagcac > 1:2056250/1‑93 (MQ=14) cagacAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGCGAC‑TCAGA‑TCGGaagagcac > 1:40851/1‑93 (MQ=14) cagacAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGCGAC‑TCAGA‑TCGGaagagcac > 1:730098/1‑93 (MQ=14) cagacAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGCGAC‑TCAGA‑TCGGaagagcac > 1:1543593/1‑93 (MQ=14) cagacAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGCGAC‑TCAGA‑TCGGAAAgagca > 1:892903/1‑96 (MQ=14) cagacAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGCAAC‑TCAGA‑TCGGaagagcac > 1:4041854/1‑93 (MQ=14) cagacAGCGACTCAGATTCAGACAGCGACTCAGACTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGAC‑TCAGA‑TCGGaagagcac > 1:799571/1‑93 (MQ=17) cagacAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGTGAC‑CCAGA‑TCGGaagagcac > 1:73747/1‑93 (MQ=11) cagacAGCGACTCAGACTCGGATAGCGATTCAGATTCAGATAGCGATTCGGATTCAGACAGTGATTCAGATTCTGACAGCTTC‑TCAGA‑TCGGaagagcac > 1:517053/1‑93 (MQ=14) cagacAGCGACTCAGACTCGGATAGCGATTCAGATTCAGATAGCGATTCGGATTCAGACAGTGATTCAGATTCAGACAGTGAC‑TCAGA‑TCGGaagagcac > 1:855829/1‑93 (MQ=14) cagacAGCGACTCAGACTCGGATAGCGATTCAGATTCAGATAGCGATTCGGATTCAGACAGTGATTCAGATTCAGACAGTGAC‑TCAGA‑TCGGaagagcac > 1:3724478/1‑93 (MQ=14) cagacAGCGACTCAGACTCGGATAGCGATTCAGATTCAGATAGCGATTCGGATTCAGACAGTGATTCAGATTCAGACAGGGAC‑TCAGA‑TCGGaagagcac > 1:5439130/1‑93 (MQ=14) cagacAGCGACTCAGACTCAGACAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGCTAC‑TCAGA‑TCGGaagagcac > 1:1981648/1‑93 (MQ=17) cagacAGCGACTCAGACCCGGATAGCGATTCAGATTCAGATAGCGATTCGGATTCAGACAGTGATTCAGATTCAGACAGTGAT‑TCAGA‑TCGGaagagcac > 1:1876247/1‑93 (MQ=14) acgacAGCGACTCAGATTCAGACAGCGATTCAGATTCAGACTGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGAC‑TCAGA‑TCGGaagagcac > 1:3458851/3‑93 (MQ=11) tgacAGTGATTCAGATTCAGACAGCGACTCAGACTCGGATAGCGACTCAGACTCAGACAGCGATTCAGACTCAGATAGCGACGTCAGA‑TCGGaagagcac > 1:2254376/2‑93 (MQ=14) tgacAGCGACTCAGACTCGGATAGCGATTCAGATTCAGATAGCGATTCGGATTCAGACAGTGATTCAGATTCAGACAGTAAC‑TCAGA‑TCGGaagagcaca > 1:934528/2‑92 (MQ=14) cgacagcgactcagactcagacagcgactcagactcaGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCCAC‑TCAGA‑TCGGaagagcaca > 1:213288/2‑92 (MQ=11) agatAGCGACTCAGAATCAGATAGTGAGTCAGATTCAGACAGTGACTCGGACTCAGACAGTGATTCAGACTCAGATAGCGAT‑TCAGA‑TCGGaagagcaca > 1:4187686/1‑92 (MQ=18) agacagcgactcagactcagacagcgactcagactcAGATAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGAC‑TCAGA‑TCGGaagagcaca > 1:5570226/1‑92 (MQ=14) agacAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGTGAC‑CCAGA‑TCGGaagagcaca > 1:4687681/1‑92 (MQ=11) gacAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGAC‑TCAGACTCGGATAGCgatt > 1:2157616/1‑100 (MQ=255) gacAGTGATTCAGATTCAGACAGCGACTCAGACTCGGATAGCGACTCAGACTCAGACAGCGATTCAGACTCAGATAGCGAC‑TCAGA‑TCGGaagagcacac > 1:2725752/1‑91 (MQ=14) acAGCGACTCAGATTCAGACAGCGACTCAGACTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGAC‑TCAGA‑TCGGaagagcacacg > 1:2134166/1‑90 (MQ=14) gaCAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGAC‑TCAGACTCGGATAGCGATTCAGATTCAGACAGCGACt > 1:5519356/1‑100 (MQ=255) cagacagcgattcagacAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGAC‑TCAGACTCGGATAGCGATTCAGATTCAGACAGCGACtcaga > 1:2459595/9‑100 (MQ=14) aCTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGAC‑TCAGACTCGGATAGCGATTCAGATTCAGACAGCGACtcagattc < 1:6105831/100‑1 (MQ=255) aCTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGAC‑TCAGACTCGGATAGCGATTCAGATTCAGACAGCGACtcagattc < 1:2659707/100‑1 (MQ=255) aCTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGAC‑TCAGACTCGGATAGCGATTCAGATTCAGACAGCGACtcagattc < 1:1634959/100‑1 (MQ=255) tcagattcagatAGCGACTCAGACCCAGATAGCGACTCAGACTCAGATAGCGAC‑TCAGACTCGGATAGCGATTCAGATTCAGACAGCGACtcagattcag < 1:4119688/100‑1 (MQ=255) cagattcagatAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGAC‑TCAGACTCGGATAGCGATTCAGATTCAGACAGCGACtcagattcaga > 1:2558486/1‑100 (MQ=255) agatagcgactcagactcagatagcgactcagactcagatagcgac‑tcagactcGGATAGCGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGAt > 1:2785405/1‑100 (MQ=255) caacgactcagattcagatagcgactcagactcagatagcgac‑tcagactcGGATAGCGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGATTCg > 1:4224335/4‑100 (MQ=255) ccgcagactcagatagcgactcagactcagatagcgac‑tcagactcGGATAGCGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGATTCGGACTc > 1:4062645/4‑100 (MQ=255) cagactcagatagcgactcagactcagatagcgac‑tcagactcGGATAGCGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGATTCGGACTCAGa > 1:4998491/1‑100 (MQ=255) cagatagcgactcagactcagatagcgac‑tcagactcGGATAGCGATTCAGATTCAGACAGCGACTCAGATTCAGATAGTGATTCGGACTCAGACAACGa > 1:4951958/1‑100 (MQ=255) cagatagcgactcagactcagatagcgac‑tcagactcGGATAGCGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGATTCGGACTCAGACAACGa > 1:4319915/1‑100 (MQ=255) agatagcgactcagactcagatagcgac‑tcagactcGGATAGCGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGATTCGGACTCAGACAACGaa < 1:2747161/100‑2 (MQ=255) actcagactcagatagcgac‑tcagactcGGATAGCGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGATTCGGACTCAGACAGCGACtcagattc < 1:2279188/100‑1 (MQ=255) cagactcagatagcgac‑tcagactcGGATAGCGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGATTCGGACTCAGACAACGACtcagatcggaa > 1:4891880/1‑95 (MQ=255) cagactcagatagcgac‑tcagactcGGATAGCGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGATTCGGACTCAGACAACGACtcagatcggaa > 1:1355114/1‑95 (MQ=255) agactcagatagcgac‑tcagactcGGATAGCGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGATTCGGACTCAGACAACGACtcagattcagat < 1:3307798/100‑1 (MQ=255) cagatagcgac‑tcagactcGGATAGCGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGATTCGGACTCAGACAACGACTCAGATTCAGATAGCga > 1:2951075/1‑100 (MQ=255) cagatagcgac‑tcagactcGGATAGCGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGATTCGGACTCAGACAACGACTCAGATTCAGATAGCga > 1:1476427/1‑100 (MQ=255) cagcctcGGATAGCGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGATTCGGACTCAGACAACGACTCAGATTCAGATAGCGAttcagattcaga > 1:3568219/1‑100 (MQ=255) | CAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGAC‑TCAGACTCGGATAGCGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGATTCGGACTCAGACAACGACTCAGATTCAGATAGCGATTCAGATTCAGA > NC_007793/613617‑613806 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |