D15 :: BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_007793	895,010	0	C	A	73.4%	568.2 / 234.3	304	E40D (GAG→GAT)	SAUSA300_RS04395	hypothetical protein
Reads supporting (aligned to +/- strand): ref base C (4/77); new base A (1/222); total (5/299)
Fisher's exact test for biased strand distribution p-value = 1.89e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 304 total aligned reads displayed.

TAAGTCACTTTGACATTTTCATTATCTGTTTTATCGATAATATTCGCTTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGTTATCTGTCGTTTGCTCAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTACTGTTGTTAAAACTAAAGCACTTGCTATCA  >  NC_007793/894912‑895101

taAGTCACTTCGACATTTTCATTATCTGTTTTATCGATAATATTCGCTTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGTTATCTGTCGTTTGCt                                                                                            <  1:5149574/100‑1 (MQ=255)

 aaGTCACTTTGACATTTTCATTATCTGTTTTATCGATAATATTCGCTTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGTTATCTGTCGTTTGCTc                                                                                           <  1:4478476/100‑1 (MQ=255)

        tttGACATTTTCATTATCTGTTTTATCGATAATATTCGCTTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGTTATCTGTCGTTTGCTCAGCtttg                                                                                    <  1:507774/100‑2 (MQ=255)

          taatcgtttCTTTGTCTGTTTTATCAATGATATTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGc                                                                                  <  1:2430022/94‑1 (MQ=255)

           gACATTTTCATTATCTGTTTTATCGATAATATTCGCTTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGTTATCTGTCGTTTGCTCAGCTTTTGCa                                                                                 <  1:6150814/100‑1 (MQ=255)

           gACATTTTCATTATCTGTTTTATCGATAATATTCGCTTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGTTATCTGTCGTTTGCTCAGCTTTTGCa                                                                                 <  1:2533971/100‑1 (MQ=255)

            aCATTTTCATTATCTGTTTTATCGATAATATTCGCTTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGTTATCTGTCGTTTGCTCAGCTTTTGCag                                                                                <  1:1788354/100‑2 (MQ=255)

             tcgtttCTTTGTCTGTTTTATCAATGATATTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAAc                                                                               <  1:4453881/97‑1 (MQ=255)

              gctcttccgaTCTGTTTTATCAATGATATTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAAca                                                                              <  1:5771379/91‑2 (MQ=255)

               ctcttccgaTCTG‑TTTATCAATGATATTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGta                                                                            <  1:4294119/92‑2 (MQ=255)

                tttCTTTGTCTGTTTTATCAATGATATTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGtt                                                                            <  1:4365477/100‑1 (MQ=255)

                tttCATTATCTGTTTTATCGATAATATTCGCTTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGTTATCTGTCGTTTGCTCAGCTTTTGCAACGtt                                                                            <  1:1983345/100‑1 (MQ=255)

                ccttccgaTCTGTTTTCTCAATGATATTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGtt                                                                            <  1:1358603/93‑1 (MQ=255)

                  ttccgaTCTG‑TTTATCAATGATATTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGttatt                                                                         <  1:3446088/95‑1 (MQ=255)

                  tctttgttcgTTTTATCAATGATATTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGttat                                                                          <  1:3333486/91‑1 (MQ=255)

                   cATTATCTGTTTTATCGATAATATTCGCTTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGTTATCTGTCGTTTGCTCAGCTTTTGCAACGttatg                                                                         <  1:2230750/100‑2 (MQ=255)

                         cTGTTTTATCAATGATATTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATAcc                                                                   <  1:5677061/100‑1 (MQ=255)

                         cTGTTTTATCAATGATATTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATAcc                                                                   <  1:5884469/100‑1 (MQ=255)

                         cTGTTTTATCAATGATATTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATAcc                                                                   <  1:5321175/100‑1 (MQ=255)

                           gTTTTGTCAATGATATTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCAt                                                                 <  1:1809785/100‑1 (MQ=255)

                           gTTTTGTCAATGATATTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCAt                                                                 <  1:1619878/100‑1 (MQ=255)

                           gTTTTATCAATGATATTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCaa                                                                 <  1:1555787/100‑2 (MQ=255)

                             tttATCAATGATATTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCAtga                                                               <  1:4076999/100‑3 (MQ=255)

                             tttATCAATGATATTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCAtca                                                               <  1:3361930/100‑3 (MQ=255)

                                    atgatatTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTg                                                        <  1:1701262/97‑1 (MQ=255)

                                    ataataTTCGCTTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGTTATCTGTCGTTTGCTCAGCTTTTGCAACGTTATTAATACCATTATAATTTg                                                        <  1:3169623/100‑1 (MQ=255)

                                     tgatatTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTga                                                       <  1:3924177/98‑1 (MQ=255)

                                     tgatatTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTga                                                       <  1:1740585/98‑1 (MQ=255)

                                     tgatatTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTga                                                       <  1:3528395/98‑1 (MQ=255)

                                     tgatatTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTga                                                       <  1:165227/98‑1 (MQ=255)

                                     tgatatTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTga                                                       <  1:6225780/98‑1 (MQ=255)

                                     tgatatTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTga                                                       <  1:5469823/98‑1 (MQ=255)

                                     tccgatctgCTTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGTTATCTGTCGTTTGCTCAGCTTTTGCAACGTTATTAATACCATTATAATTTga                                                       <  1:5548605/92‑1 (MQ=255)

                                     taataTTCGCTTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGTTATCTGTCGTTTGCTCAGCTTTTGCAACGTTATTAATACCATTATAATTTga                                                       <  1:1171746/100‑1 (MQ=255)

                                       atatTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTgaag                                                     <  1:916842/100‑1 (MQ=255)

                                       atatTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTgaag                                                     <  1:3050842/100‑1 (MQ=255)

                                        tatTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTgaaga                                                    <  1:4922317/100‑1 (MQ=255)

                                        tatTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTgaaga                                                    <  1:1579445/100‑1 (MQ=255)

                                        tatTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAACTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTgaaga                                                    <  1:3234563/100‑1 (MQ=255)

                                              cgtcttTTAAAGCGTCTCTTACATTGTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAAtc                                              <  1:3484887/98‑2 (MQ=255)

                                                     tAAAGCGTCTCTTACATTTTTCCACAATTCGTTATCTGTCGTTTGCTCAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCt                                       <  1:4760335/100‑1 (MQ=255)

                                                      aaaTCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTg                                      <  1:5949247/100‑1 (MQ=255)

                                                      aaaGCGTCTCTTACATTTTTCCACAATTCGCTTTCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTg                                      <  1:2106235/100‑1 (MQ=255)

                                                      aaaGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTg                                      <  1:357215/100‑1 (MQ=255)

                                                      aaaGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTg                                      <  1:4277467/100‑1 (MQ=255)

                                                      aaaGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTg                                      <  1:4189406/100‑1 (MQ=255)

                                                      aaaGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTg                                      <  1:3123905/100‑1 (MQ=255)

                                                       aaGCGTCTCTTACATTTTTCCACAATTCGTTATCTGTCGTTTGCTCAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTgc                                     <  1:1290045/100‑2 (MQ=255)

                                                       aaGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGa                                     <  1:1513688/100‑1 (MQ=255)

                                                       aaGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGa                                     <  1:6077348/100‑1 (MQ=255)

                                                       aaGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGa                                     <  1:3653309/100‑1 (MQ=255)

                                                       aaGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGa                                     <  1:3254556/100‑1 (MQ=255)

                                                       aaGCGTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGa                                     <  1:2886036/100‑1 (MQ=255)

                                                        ccgatctcTTACTTTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGag                                    <  1:2042430/96‑2 (MQ=255)

                                                           gTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCt                                 <  1:2657489/100‑1 (MQ=255)

                                                           gTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCt                                 <  1:37307/100‑1 (MQ=255)

                                                           gTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCt                                 <  1:3846411/100‑1 (MQ=255)

                                                           gTCTCTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCt                                 <  1:4039925/100‑1 (MQ=255)

                                                           atctcTTGCGTTTTTTCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCt                                 <  1:4204502/99‑1 (MQ=255)

                                                            tctcTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAAccgg                                <  1:3971391/100‑3 (MQ=255)

                                                            tctcTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTa                                <  1:5237799/100‑1 (MQ=255)

                                                            tctcTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTa                                <  1:1604888/100‑1 (MQ=255)

                                                            tctcTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTa                                <  1:413009/100‑1 (MQ=255)

                                                            tctcTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTa                                <  1:6179976/100‑1 (MQ=255)

                                                            tctcTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTa                                <  1:3459889/100‑1 (MQ=255)

                                                            tctcTTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTa                                <  1:5809253/100‑1 (MQ=255)

                                                             ctctTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTag                               <  1:5662000/100‑2 (MQ=255)

                                                             ctctTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTAc                               <  1:1445047/100‑1 (MQ=255)

                                                             ctctTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTAc                               <  1:3013434/100‑1 (MQ=255)

                                                              ttccgatcttttCCACAATTCGTTATCTGTCGTTTGCTCAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTACt                              <  1:1122880/92‑1 (MQ=255)

                                                              tctTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAGCCTACt                              <  1:5864917/100‑1 (MQ=255)

                                                              tctTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTACt                              <  1:6007007/100‑1 (MQ=255)

                                                              tctTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTACt                              <  1:734836/100‑1 (MQ=255)

                                                               ctTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTACtg                             <  1:5361545/100‑1 (MQ=255)

                                                               ctTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTACtg                             <  1:944438/100‑1 (MQ=255)

                                                               ctTACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTACtg                             <  1:2123589/100‑1 (MQ=255)

                                                               ctTACATTTTTCCACAATTCGCTACCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTACta                             <  1:648388/100‑2 (MQ=255)

                                                                ttACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTACtgt                            <  1:5637885/100‑1 (MQ=255)

                                                                ttACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTACtgt                            <  1:5972539/100‑1 (MQ=255)

                                                                ttACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTACtgt                            <  1:2760499/100‑1 (MQ=255)

                                                                ttACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTACtgc                            <  1:4828156/100‑2 (MQ=255)

                                                                ttACATTTTT‑CACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTACtgtg                           <  1:1002435/100‑2 (MQ=255)

                                                                 tACATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTACtgta                           <  1:863455/100‑2 (MQ=255)

                                                                  atctttttCCACAATTCGTTATCTGTCGTTTGCTCAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTACtgttt                          <  1:6046587/97‑2 (MQ=255)

                                                                  aCATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTACtgttg                          <  1:4720396/100‑1 (MQ=255)

                                                                  aCATTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTACtgttg                          <  1:1234682/100‑1 (MQ=255)

                                                                   cATTTTTCCACAATTCGTTATCTGTCGTTTGCTCAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTACtgttaa                         <  1:802346/100‑3 (MQ=255)

                                                                    atctttctgcaATTCGTTATCTGTCGTTTGCTCAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTACTgttgtt                        <  1:309860/91‑1 (MQ=255)

                                                                    aTTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTACTgttgtt                        <  1:2672485/100‑1 (MQ=255)

                                                                    aTTTTTCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTACTgttgtt                        <  1:2563732/100‑1 (MQ=255)

                                                                     tttttCCACAATTCGTTATCTGTCGTTTGCTCAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTACTGTTGTTa                       <  1:1326327/100‑1 (MQ=255)

                                                                     tttttCCACAATTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTACTGTTGTTa                       <  1:5036282/100‑1 (MQ=255)

                                                                     gatctCCACAGTTCGCTATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTACTGTTGTTa                       <  1:1048229/96‑1 (MQ=255)

                                                                          ccACAATTCGTTATCTGTCGTTTGCTCAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTACTGTTGTTAAAACt                  >  1:3416727/1‑100 (MQ=255)

                                                                                     gaTCTGTCGTCTGCTCAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTACTGTTGTTAAAACTAAAGCACTTgt       <  1:2924191/99‑2 (MQ=255)

                                                                                      aTCTGTCGTTTGCTCAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTACTGTTGTTAAAACTAAAGCACTTGCt      <  1:4560116/100‑1 (MQ=255)

                                                                                       tCTGTCGTATGCTCAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTACTGTTGTTAAAACTAAAGCACTTGCTa     <  1:2802394/100‑1 (MQ=255)

                                                                                        cTGTCGTTTGCTCAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTACTGTTGTTAAAACTAAAGCACTTGCTag    <  1:2331431/100‑2 (MQ=255)

                                                                                         tGTCGTTTGCTCAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTACTGTTGTTAAAACTAAAGCACTTGCTATc   <  1:4868529/100‑1 (MQ=255)

                                                                                          gTCGTTTGCTCAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTACTGTTGTTAAAACTAAAGCACTTGCTATCa  <  1:220670/100‑1 (MQ=255)

TAAGTCACTTTGACATTTTCATTATCTGTTTTATCGATAATATTCGCTTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGTTATCTGTCGTTTGCTCAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATGAAAACCTGAACCTACTGTTGTTAAAACTAAAGCACTTGCTATCA  >  NC_007793/894912‑895101

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`