Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_007793	895,240	0	C	A	75.0%	17.8 / 3.5	12	intergenic (‑111/‑923)	SAUSA300_RS04395/SAUSA300_RS04400	hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (0/3);  new base A (1/8);  total (1/11)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TACAAAGTAATTTTACAATTATTATTTATGTAAATCAATTAAATAATTATTAACAAAGATATAAAATATTATTATTACAATATATTAATTTTGAGCTGGAAATATTCGTTATTTATGCTATAATCATTTTAGACACAGCAATGTGTTCAAATTTTCATCTATTCGTAAGTTAG  >  NC_007793/895163‑895335                                                                              |                                                                                                tACAAAGTAATTTTACAATTATTATTTATGTAAATCAATTAAATAATTATTAACAAAGATATAAAATATTATTATTACAATATATTAATTTTGAGCTggg                                                                           <  1:6202637/100‑2 (MQ=255)  aCAAAGTAATTTTAGAATTATTATTTATGTAAATCAATTAAATAATTATTAACAAATCCATAAAATTTTATCATTGAAATATAATAATTTTGAGCTAGaa                                                                          >  1:4361186/1‑100 (MQ=255)           ttttATAATTATTATTTATGTAAATCAATTAAATAATTATTAACAAAGATATAAAATATTATTATTACAATATATTAATTTTGAGCTGGAAATATTCGtt                                                                 <  1:2924713/100‑1 (MQ=255)              tagagttattattTATGTAAATCAATTAAATAATTATTAACAAATCCATAAAATTTTATCATTGAAATATAATAATTTTGAGCTAGAAATATTCGtcatt                                                              <  1:4394826/95‑1 (MQ=255)               agaaTTATTATTTATGTAAATCAATTAAATAATTATTAACAAATCCATAAAATTTTATCATTGAAATATAATAATTTTGAGCTAGAAATATTCGtcattt                                                             <  1:4776130/98‑1 (MQ=255)                      ttatttatGTAAATCAATTAAATAATTATTAACAAATCCATAAAATTTTATCATTGAAATATAATAATTTTGAGCTAGAAATATTCGTCATTTATGCtat                                                      <  1:564969/100‑1 (MQ=255)                               tAAATCAATTAAATAATTATTAACAAATCCATAAAATTTTATCATTGAAATATAATAATTTTGAGCTAGAAATATTCGTCATTTATGCTATAATCGtttt                                             <  1:5112944/100‑1 (MQ=255)                                             aatTATTAACAAATCCATAAAATTTTATCATTGAAATATAATAATTTTGAGCTAGAAATATTCGTCATTTATGCTATAATCGTTTTAGACACAGCAAtgt                               <  1:1682216/100‑1 (MQ=255)                                             aatTATTAACAAATCCATAAAATTTTATCATTGAAATATAATAATTTTGAGCTAGAAATATTCGTCATTTATGCTATAATCGTTTTAGACACAGCAAtgt                               <  1:5350578/100‑1 (MQ=255)                                                 attaACAAATCCATAAAATTTTATCATTGAAATATAATAATTTTGAGCTAGAAATATTCGTCATTTATGCTATAATCGTTTTAGACACAGCAAtgtgcct                           <  1:5961437/100‑4 (MQ=255)                                                 attaACAAATCCATAAAATTTTATCATTGAAATATAATAATTTTGAGCTAGAAATATTCGTCATTTATGCTATAATCGTTTTAGACACAGCAATGTGTTc                           <  1:1033480/100‑1 (MQ=255)                                                                          attaCAATATATTAATTTTGAGCTGGAAATATTCGTTATTTATGCTATAATCATTTTAGACACAGCAATGTGTTCAAATTTTCATCTATTCGTAAGTTAg  <  1:2409232/100‑1 (MQ=255)                                                                              |                                                                                                TACAAAGTAATTTTACAATTATTATTTATGTAAATCAATTAAATAATTATTAACAAAGATATAAAATATTATTATTACAATATATTAATTTTGAGCTGGAAATATTCGTTATTTATGCTATAATCATTTTAGACACAGCAATGTGTTCAAATTTTCATCTATTCGTAAGTTAG  >  NC_007793/895163‑895335

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑