| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 2,249,009 | 0 | A | T | 73.7% | 18.0 / 8.6 | 19 | intergenic (‑396/+3) | SAUSA300_RS11480/SAUSA300_RS11485 | hypothetical protein/ATP‑grasp domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base A (2/3); new base T (0/14); total (2/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.85e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.05e-02 | |||||||||||
TCGAAAAAAGCTTGTTACAAACGCATATTCAGTCAACTACTGGCAACACAACATTGTAGCGCCTTATGTTCCGAAC‑TC‑TAATAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGCCAAACCTTGA > NC_007793/2248935‑2249101 | tCGAAAAAAGCTTGTTACAAACGCATATTCAGTCAACTACTGGCAACACAACATTGTAGCGCCTTATGTTCCGAAC‑TC‑TAATAGTGTTCAAGTTCAGCTa < 1:93688/100‑1 (MQ=255) cATATTCAGTCAACTACTGGCAACACAACATTGTAGCGCCTTATGTTCCGAAC‑TC‑TAATAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCacg < 1:3536060/100‑3 (MQ=255) actGGCAACACAACATTGTAGCGCCTTATGTTCCGAAC‑TC‑TAATAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGaa > 1:187323/1‑100 (MQ=255) acacaacaTTGTAGCGCCTTATGTTCCGAAC‑TC‑TAATAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCAt > 1:1237608/1‑100 (MQ=255) acgtgtgctcttCCGATC‑TC‑TTTTAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGcc < 1:335663/90‑1 (MQ=255) acgtgtgctcttCCGATC‑TC‑ATTTAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGcc < 1:2793339/90‑1 (MQ=255) cgtgtgctcttCCGATC‑TC‑TAATGGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGCCa < 1:706430/91‑1 (MQ=255) cgtgtgctcttCCGATC‑TC‑TAATAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGCCa < 1:2979958/91‑1 (MQ=255) cgtgtgctcttCCGATC‑TC‑TAATAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGCCa < 1:5921890/91‑1 (MQ=255) cgtgtgctcttCCGATC‑TC‑AAATAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGCCa < 1:5328761/91‑1 (MQ=255) gtgtgctcttCCGATCTTC‑TAATAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGCCa < 1:6138872/92‑1 (MQ=255) gtgtgctcttCCGATC‑TC‑TATTAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGCCaa < 1:1592622/92‑1 (MQ=255) gtgtgctcttCCGATC‑TC‑TAATAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGCCaa < 1:6011610/92‑1 (MQ=255) tgtgctcttCCGATC‑TCTTAATAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGCCaa < 1:4981433/93‑1 (MQ=255) gtgctcttCCGATC‑TC‑TCTTAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGCCAAAc < 1:3578935/94‑1 (MQ=255) gtgctcttCCGATC‑TC‑TAACAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGCCAAAc < 1:5726070/94‑1 (MQ=255) gctcttCCGATC‑TC‑T‑ATAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGCCAAACCtt < 1:4217876/96‑1 (MQ=255) ctcttCCGATC‑TC‑TCTTAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGCCAAACCtt < 1:5597505/97‑1 (MQ=255) tcttCCGATC‑TC‑TAACAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGCCAAACCTTg < 1:2637421/98‑1 (MQ=255) gTTCCGAAC‑TC‑TAATAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGCTAAAccagat < 1:5520525/100‑5 (MQ=255) | TCGAAAAAAGCTTGTTACAAACGCATATTCAGTCAACTACTGGCAACACAACATTGTAGCGCCTTATGTTCCGAAC‑TC‑TAATAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGCCAAACCTTGA > NC_007793/2248935‑2249101 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |