breseq  version 0.38.1   mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	annotation	gene	description
RA	516,032	G→A	G86D (GGT→GAT)	C7Y58_02640 →	transcriptional repressor
RA	761,062	A→G	K479K (AAA→AAG)	C7Y58_03755 →	hemolysin activator protein precursor
RA	875,381	A→G	K85E (AAA→GAA)	C7Y58_04335 →	autotransporter domain‑containing protein
RA	1,012,551	G→C	G350R (GGG→CGG)	C7Y58_04950 →	DUF2194 domain‑containing protein
RA	1,054,222	(G)11→10	coding (138/150 nt)	C7Y58_05125 →	site‑specific DNA‑methyltransferase (Type III DNA modification enzyme)
RA	1,262,493	2 bp→TG	pseudogene (1086‑1087/1276 nt)	C7Y58_06050 →	ISL3 family transposase
JC	2,060,555	(AAGATGGTGAAAA)1→2	coding (185/1413 nt)	C7Y58_09990 →	alanine:cation symporter family protein

Unassigned new junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP028101	= 336796	NA (NA)	558 (1.210) +TTTT	171/290	0.3	99.8%	noncoding (28/1558 nt)	C7Y58_01750	16S ribosomal RNA
	?	CP028101	= 534770	1 (0.000)					noncoding (26/1558 nt)	C7Y58_02725	16S ribosomal RNA
*	?	CP028101	= 493674	NA (NA)	338 (1.120) +54 bp	118/190	0.2	NA	coding (429/456 nt)	C7Y58_02580	OmpA family protein
	?	CP028101	493722 =	NA (NA)					coding (1/7146 nt)	C7Y58_02585	autotransporter domain‑containing protein
*	?	CP028101	= 900717	NA (NA)	423 (0.950) +CCACTTTATC	144/278	0.8	NA	pseudogene (930/1276 nt)	C7Y58_04430	ISL3 family transposase
	?	CP028101	900717 =	NA (NA)					pseudogene (930/1276 nt)	C7Y58_04430	ISL3 family transposase