#=GENOME_DIFF	1.0
#=CREATED	21:17:41 08 Jan 2025
#=PROGRAM	breseq 0.38.1 
#=COMMAND	breseq -j 16 -r /scratch/hb-JMvDijl/GerbrenSpoelstra/genomes/ATCC25586/GCA_003019295.1/Fusobacterium_nucleatum_subsp_nucleatum_ATCC25586.gbk /scratch/hb-JMvDijl/GerbrenSpoelstra/fastq/F.nNCl_Unknown_CL297-ZX01-010004_1.fq.gz /scratch/hb-JMvDijl/GerbrenSpoelstra/fastq/F.nNCl_Unknown_CL297-ZX01-010004_2.fq.gz -o /tmp/F.nNCl
#=REFSEQ	/scratch/hb-JMvDijl/GerbrenSpoelstra/genomes/ATCC25586/GCA_003019295.1/Fusobacterium_nucleatum_subsp_nucleatum_ATCC25586.gbk
#=READSEQ	/scratch/hb-JMvDijl/GerbrenSpoelstra/fastq/F.nNCl_Unknown_CL297-ZX01-010004_1.fq.gz
#=READSEQ	/scratch/hb-JMvDijl/GerbrenSpoelstra/fastq/F.nNCl_Unknown_CL297-ZX01-010004_2.fq.gz
#=CONVERTED-BASES	1074444000
#=CONVERTED-READS	7162960
#=INPUT-BASES	1076793900
#=INPUT-READS	7178626
#=MAPPED-BASES	1047073884
#=MAPPED-READS	6985927
SNP	1	19	CP028101	516032	A
SNP	2	23	CP028101	761062	G
SNP	3	28	CP028101	875381	G
SNP	4	32	CP028101	1012551	C
DEL	5	33	CP028101	1054222	1	repeat_length=1	repeat_new_copies=10	repeat_ref_copies=11	repeat_seq=G
SUB	6	37,38	CP028101	1262493	2	TG
INS	7	196	CP028101	2060555	AAGATGGTGAAAA	repeat_length=13	repeat_new_copies=2	repeat_ref_copies=1	repeat_seq=AAGATGGTGAAAA
RA	8	.	CP028101	81639	0	C	T	bias_e_value=3.11811e-23	bias_p_value=1.43026e-29	consensus_reject=FREQUENCY_CUTOFF	consensus_score=814.5	fisher_strand_p_value=1.99508e-31	frequency=2.075e-01	ks_quality_p_value=1	major_base=C	major_cov=88/206	major_frequency=7.925e-01	minor_base=T	minor_cov=76/1	new_cov=76/1	polymorphism_frequency=2.075e-01	polymorphism_score=37.4	prediction=polymorphism	ref_cov=88/206	total_cov=185/207
RA	9	.	CP028101	107904	0	C	T	bias_e_value=5.53864e-28	bias_p_value=2.54054e-34	consensus_reject=FREQUENCY_CUTOFF	consensus_score=991.7	fisher_strand_p_value=3.06934e-36	frequency=2.000e-01	ks_quality_p_value=1	major_base=C	major_cov=108/236	major_frequency=8.000e-01	minor_base=T	minor_cov=86/0	new_cov=86/0	polymorphism_frequency=2.000e-01	polymorphism_score=42.7	prediction=polymorphism	ref_cov=108/236	total_cov=218/236
RA	10	.	CP028101	128387	0	G	A	bias_e_value=6.58987e-56	bias_p_value=3.02274e-62	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1025.6	fisher_strand_p_value=2.04725e-64	frequency=2.379e-01	ks_quality_p_value=1	major_base=G	major_cov=293/53	major_frequency=7.621e-01	minor_base=A	minor_cov=0/108	new_cov=0/108	polymorphism_frequency=2.379e-01	polymorphism_score=65.3	prediction=polymorphism	ref_cov=293/53	total_cov=293/180
RA	11	.	CP028101	158536	0	A	G	bias_e_value=4.79007e-26	bias_p_value=2.19718e-32	consensus_reject=FREQUENCY_CUTOFF	consensus_score=748.5	fisher_strand_p_value=2.8077e-34	frequency=2.357e-01	ks_quality_p_value=1	major_base=A	major_cov=111/197	major_frequency=7.643e-01	minor_base=G	minor_cov=95/0	new_cov=95/0	polymorphism_frequency=2.357e-01	polymorphism_score=94.9	prediction=polymorphism	ref_cov=111/197	total_cov=206/197
RA	12	.	CP028101	158537	0	C	G	bias_e_value=3.28975e-27	bias_p_value=1.50899e-33	consensus_reject=FREQUENCY_CUTOFF	consensus_score=816.8	fisher_strand_p_value=1.86369e-35	frequency=2.278e-01	ks_quality_p_value=1	major_base=C	major_cov=81/197	major_frequency=7.722e-01	minor_base=G	minor_cov=82/0	new_cov=82/0	polymorphism_frequency=2.278e-01	polymorphism_score=109.4	prediction=polymorphism	ref_cov=81/197	total_cov=204/197
RA	13	.	CP028101	158538	0	C	G	bias_e_value=1.43379e-32	bias_p_value=6.5767e-39	consensus_reject=FREQUENCY_CUTOFF	consensus_score=836.9	fisher_strand_p_value=7.03731e-41	frequency=2.542e-01	ks_quality_p_value=1	major_base=C	major_cov=70/197	major_frequency=7.458e-01	minor_base=G	minor_cov=91/0	new_cov=91/0	polymorphism_frequency=2.542e-01	polymorphism_score=110.3	prediction=polymorphism	ref_cov=70/197	total_cov=204/197
RA	14	.	CP028101	276378	0	A	C	bias_e_value=4.34055e-36	bias_p_value=1.99098e-42	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1147.7	fisher_strand_p_value=1.95883e-44	frequency=2.329e-01	ks_quality_p_value=1	major_base=A	major_cov=112/247	major_frequency=7.671e-01	minor_base=C	minor_cov=109/0	new_cov=109/0	polymorphism_frequency=2.329e-01	polymorphism_score=61.7	prediction=polymorphism	ref_cov=112/247	total_cov=226/247
RA	15	.	CP028101	276396	0	G	T	bias_e_value=2.60369e-29	bias_p_value=1.1943e-35	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1290.7	fisher_strand_p_value=1.39089e-37	frequency=2.050e-01	ks_quality_p_value=1	major_base=G	major_cov=133/247	major_frequency=7.950e-01	minor_base=T	minor_cov=98/0	new_cov=98/0	polymorphism_frequency=2.050e-01	polymorphism_score=69.6	prediction=polymorphism	ref_cov=133/247	total_cov=232/247
RA	16	.	CP028101	345348	0	A	G	bias_e_value=1.18787e-33	bias_p_value=5.44868e-40	consensus_reject=FREQUENCY_CUTOFF	consensus_score=684.1	fisher_strand_p_value=5.67736e-42	frequency=2.970e-01	ks_quality_p_value=1	major_base=A	major_cov=143/205	major_frequency=7.030e-01	minor_base=G	minor_cov=146/1	new_cov=146/1	polymorphism_frequency=2.970e-01	polymorphism_score=177.2	prediction=polymorphism	ref_cov=143/205	total_cov=290/206
RA	17	.	CP028101	345350	0	C	G	bias_e_value=1.98225e-62	bias_p_value=9.09247e-69	consensus_reject=FREQUENCY_CUTOFF	consensus_score=698.8	fisher_strand_p_value=5.58632e-71	frequency=3.839e-01	ks_quality_p_value=1	major_base=C	major_cov=47/205	major_frequency=6.161e-01	minor_base=G	minor_cov=157/0	new_cov=157/0	polymorphism_frequency=3.839e-01	polymorphism_score=270.1	prediction=polymorphism	ref_cov=47/205	total_cov=284/205
RA	18	.	CP028101	502592	0	G	A	bias_e_value=8.24728e-23	bias_p_value=3.78298e-29	consensus_reject=FREQUENCY_CUTOFF	consensus_score=857.9	fisher_strand_p_value=5.35053e-31	frequency=2.099e-01	ks_quality_p_value=1	major_base=G	major_cov=205/130	major_frequency=7.901e-01	minor_base=A	minor_cov=0/89	new_cov=0/89	polymorphism_frequency=2.099e-01	polymorphism_score=40.2	prediction=polymorphism	ref_cov=205/130	total_cov=205/239
RA	19	.	CP028101	516032	0	G	A	bias_e_value=2180100	bias_p_value=1	consensus_score=2456.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=317/317	major_frequency=9.984e-01	minor_base=G	minor_cov=0/1	new_cov=317/317	polymorphism_frequency=9.984e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=317/318
RA	20	.	CP028101	618209	0	C	G	bias_e_value=2123910	bias_p_value=0.974227	consensus_reject=FREQUENCY_CUTOFF	consensus_score=791.9	fisher_strand_p_value=0.781728	frequency=7.740e-01	ks_quality_p_value=1	major_base=G	major_cov=256/261	major_frequency=7.740e-01	minor_base=C	minor_cov=77/74	new_cov=256/261	polymorphism_frequency=7.740e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=77/74	total_cov=333/335
RA	21	.	CP028101	628912	0	G	C	bias_e_value=9.43632e-42	bias_p_value=4.32839e-48	consensus_reject=FREQUENCY_CUTOFF	consensus_score=956.1	fisher_strand_p_value=3.7703e-50	frequency=2.389e-01	ks_quality_p_value=1	major_base=G	major_cov=244/65	major_frequency=7.611e-01	minor_base=C	minor_cov=0/97	new_cov=0/97	polymorphism_frequency=2.389e-01	polymorphism_score=138.4	prediction=polymorphism	ref_cov=244/65	total_cov=244/216
RA	22	.	CP028101	745840	0	G	A	bias_e_value=1.18851e-30	bias_p_value=5.45162e-37	consensus_reject=FREQUENCY_CUTOFF	consensus_score=931.3	fisher_strand_p_value=6.12622e-39	frequency=2.160e-01	ks_quality_p_value=1	major_base=G	major_cov=236/87	major_frequency=7.840e-01	minor_base=A	minor_cov=1/88	new_cov=1/88	polymorphism_frequency=2.160e-01	polymorphism_score=41.7	prediction=polymorphism	ref_cov=236/87	total_cov=237/221
RA	23	.	CP028101	761062	0	A	G	bias_e_value=2180100	bias_p_value=1	consensus_score=132.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=22/27	major_frequency=9.800e-01	minor_base=A	minor_cov=0/1	new_cov=22/27	polymorphism_frequency=9.800e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=22/28
RA	24	.	CP028101	845508	0	C	T	bias_e_value=1.17168e-47	bias_p_value=5.37441e-54	consensus_reject=FREQUENCY_CUTOFF	consensus_score=724.3	fisher_strand_p_value=4.18196e-56	frequency=3.138e-01	ks_quality_p_value=1	major_base=C	major_cov=84/220	major_frequency=6.862e-01	minor_base=T	minor_cov=139/0	new_cov=139/0	polymorphism_frequency=3.138e-01	polymorphism_score=136.6	prediction=polymorphism	ref_cov=84/220	total_cov=225/220
RA	25	.	CP028101	849249	0	T	C	bias_e_value=5.6856e-37	bias_p_value=2.60795e-43	consensus_reject=FREQUENCY_CUTOFF	consensus_score=967.6	fisher_strand_p_value=2.51504e-45	frequency=2.254e-01	ks_quality_p_value=1	major_base=T	major_cov=84/246	major_frequency=7.746e-01	minor_base=C	minor_cov=96/0	new_cov=96/0	polymorphism_frequency=2.254e-01	polymorphism_score=62.6	prediction=polymorphism	ref_cov=84/246	total_cov=184/246
RA	26	.	CP028101	849254	0	A	C	bias_e_value=5.11999e-34	bias_p_value=2.34851e-40	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1169.0	fisher_strand_p_value=2.42558e-42	frequency=2.077e-01	ks_quality_p_value=1	major_base=A	major_cov=96/255	major_frequency=7.923e-01	minor_base=C	minor_cov=92/0	new_cov=92/0	polymorphism_frequency=2.077e-01	polymorphism_score=69.6	prediction=polymorphism	ref_cov=96/255	total_cov=191/255
RA	27	.	CP028101	849257	0	A	C	bias_e_value=9.25078e-34	bias_p_value=4.24328e-40	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1160.7	fisher_strand_p_value=4.40976e-42	frequency=2.132e-01	ks_quality_p_value=1	major_base=A	major_cov=98/249	major_frequency=7.868e-01	minor_base=C	minor_cov=94/0	new_cov=94/0	polymorphism_frequency=2.132e-01	polymorphism_score=47.6	prediction=polymorphism	ref_cov=98/249	total_cov=196/249
RA	28	.	CP028101	875381	0	A	G	consensus_score=85.6	frequency=1	major_base=G	major_cov=22/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/17
RA	29	.	CP028101	915752	0	C	G	bias_e_value=6.9836e-38	bias_p_value=3.20334e-44	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1049.4	fisher_strand_p_value=3.02741e-46	frequency=2.148e-01	ks_quality_p_value=1	major_base=C	major_cov=74/255	major_frequency=7.852e-01	minor_base=G	minor_cov=90/0	new_cov=90/0	polymorphism_frequency=2.148e-01	polymorphism_score=111.1	prediction=polymorphism	ref_cov=74/255	total_cov=203/255
RA	30	.	CP028101	958957	0	T	G	bias_e_value=6.60592e-29	bias_p_value=3.0301e-35	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1228.0	fisher_strand_p_value=3.56803e-37	frequency=2.054e-01	ks_quality_p_value=1	major_base=T	major_cov=239/117	major_frequency=7.946e-01	minor_base=G	minor_cov=0/92	new_cov=0/92	polymorphism_frequency=2.054e-01	polymorphism_score=25.0	prediction=polymorphism	ref_cov=239/117	total_cov=239/227
RA	31	.	CP028101	967944	0	A	C	bias_e_value=1.04986e-33	bias_p_value=4.81566e-40	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1361.1	fisher_strand_p_value=5.01126e-42	frequency=2.082e-01	ks_quality_p_value=1	major_base=A	major_cov=152/274	major_frequency=7.918e-01	minor_base=C	minor_cov=112/0	new_cov=112/0	polymorphism_frequency=2.082e-01	polymorphism_score=80.9	prediction=polymorphism	ref_cov=152/274	total_cov=264/275
RA	32	.	CP028101	1012551	0	G	C	bias_e_value=1728650	bias_p_value=0.792924	consensus_score=1854.0	fisher_strand_p_value=0.43002	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=211/281	major_frequency=9.980e-01	minor_base=A	minor_cov=1/0	new_cov=211/281	polymorphism_frequency=9.980e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=212/281
RA	33	.	CP028101	1054222	0	G	.	bias_e_value=1868260	bias_p_value=0.856958	consensus_score=482.5	fisher_strand_p_value=0.515317	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=142/10	major_frequency=9.383e-01	minor_base=G	minor_cov=9/1	new_cov=142/10	polymorphism_frequency=9.383e-01	polymorphism_score=44.9	prediction=consensus	ref_cov=9/1	total_cov=151/12
RA	34	.	CP028101	1153298	0	A	G	bias_e_value=4.5517e-31	bias_p_value=2.08784e-37	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1002.5	fisher_strand_p_value=2.32088e-39	frequency=2.089e-01	ks_quality_p_value=1	major_base=A	major_cov=117/258	major_frequency=7.911e-01	minor_base=G	minor_cov=98/1	new_cov=98/1	polymorphism_frequency=2.089e-01	polymorphism_score=101.0	prediction=polymorphism	ref_cov=117/258	total_cov=215/259
RA	35	.	CP028101	1153299	0	A	G	bias_e_value=4.83997e-88	bias_p_value=2.22007e-94	consensus_reject=FREQUENCY_CUTOFF	consensus_score=536.6	fisher_strand_p_value=9.99812e-97	frequency=3.843e-01	ks_quality_p_value=1	major_base=A	major_cov=33/257	major_frequency=6.157e-01	minor_base=G	minor_cov=181/0	new_cov=181/0	polymorphism_frequency=3.843e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=33/257	total_cov=215/259
RA	36	.	CP028101	1228361	0	G	T	bias_e_value=1.04748e-10	bias_p_value=4.80471e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=660.1	fisher_strand_p_value=1.13534e-18	frequency=2.045e-01	ks_quality_p_value=1	major_base=G	major_cov=127/83	major_frequency=7.955e-01	minor_base=T	minor_cov=0/54	new_cov=0/54	polymorphism_frequency=2.045e-01	polymorphism_score=40.4	prediction=polymorphism	ref_cov=127/83	total_cov=128/144
RA	37	.	CP028101	1262493	0	C	T	consensus_score=14.1	frequency=1	major_base=T	major_cov=1/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=1/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=1/10
RA	38	.	CP028101	1262494	0	A	G	consensus_score=13.7	frequency=1	major_base=G	major_cov=1/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=1/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=1/10
RA	39	.	CP028101	1329704	0	G	C	bias_e_value=8.31066e-31	bias_p_value=3.81205e-37	consensus_reject=FREQUENCY_CUTOFF	consensus_score=773.6	fisher_strand_p_value=4.26643e-39	frequency=3.000e-01	ks_quality_p_value=1	major_base=G	major_cov=169/83	major_frequency=7.000e-01	minor_base=C	minor_cov=0/108	new_cov=0/108	polymorphism_frequency=3.000e-01	polymorphism_score=157.4	prediction=polymorphism	ref_cov=169/83	total_cov=169/237
RA	40	.	CP028101	1374796	0	T	C	bias_e_value=3.47551e-33	bias_p_value=1.59419e-39	consensus_reject=FREQUENCY_CUTOFF	consensus_score=619.4	fisher_strand_p_value=1.6801e-41	frequency=3.167e-01	ks_quality_p_value=1	major_base=T	major_cov=182/105	major_frequency=6.833e-01	minor_base=C	minor_cov=1/132	new_cov=1/132	polymorphism_frequency=3.167e-01	polymorphism_score=164.8	prediction=polymorphism	ref_cov=182/105	total_cov=183/237
RA	41	.	CP028101	1393372	0	A	G	bias_e_value=8.12774e-23	bias_p_value=3.72815e-29	consensus_reject=FREQUENCY_CUTOFF	consensus_score=700.8	fisher_strand_p_value=5.27187e-31	frequency=2.363e-01	ks_quality_p_value=1	major_base=A	major_cov=93/185	major_frequency=7.637e-01	minor_base=G	minor_cov=85/1	new_cov=85/1	polymorphism_frequency=2.363e-01	polymorphism_score=93.7	prediction=polymorphism	ref_cov=93/185	total_cov=178/187
RA	42	.	CP028101	1447803	0	G	A	bias_e_value=1.20814e-31	bias_p_value=5.54167e-38	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1169.3	fisher_strand_p_value=6.06973e-40	frequency=2.000e-01	ks_quality_p_value=1	major_base=G	major_cov=269/143	major_frequency=8.000e-01	minor_base=A	minor_cov=0/103	new_cov=0/103	polymorphism_frequency=2.000e-01	polymorphism_score=52.4	prediction=polymorphism	ref_cov=269/143	total_cov=269/250
RA	43	.	CP028101	1515247	0	T	G	bias_e_value=3.79024e-40	bias_p_value=1.73856e-46	consensus_reject=FREQUENCY_CUTOFF	consensus_score=933.1	fisher_strand_p_value=1.5652e-48	frequency=2.750e-01	ks_quality_p_value=1	major_base=T	major_cov=215/75	major_frequency=7.250e-01	minor_base=G	minor_cov=0/110	new_cov=0/110	polymorphism_frequency=2.750e-01	polymorphism_score=115.2	prediction=polymorphism	ref_cov=215/75	total_cov=215/190
RA	44	.	CP028101	1727846	0	G	A	bias_e_value=3.15077e-33	bias_p_value=1.44524e-39	consensus_reject=FREQUENCY_CUTOFF	consensus_score=664.9	fisher_strand_p_value=1.52153e-41	frequency=2.787e-01	ks_quality_p_value=1	major_base=G	major_cov=187/77	major_frequency=7.213e-01	minor_base=A	minor_cov=0/102	new_cov=0/102	polymorphism_frequency=2.787e-01	polymorphism_score=58.6	prediction=polymorphism	ref_cov=187/77	total_cov=187/203
RA	45	.	CP028101	1847131	0	C	T	bias_e_value=2.6831e-22	bias_p_value=1.23072e-28	consensus_reject=FREQUENCY_CUTOFF	consensus_score=682.6	fisher_strand_p_value=1.77067e-30	frequency=2.438e-01	ks_quality_p_value=1	major_base=C	major_cov=105/171	major_frequency=7.562e-01	minor_base=T	minor_cov=89/0	new_cov=89/0	polymorphism_frequency=2.438e-01	polymorphism_score=47.0	prediction=polymorphism	ref_cov=105/171	total_cov=231/171
RA	46	.	CP028101	1860126	0	G	C	bias_e_value=2.7963e-55	bias_p_value=1.28265e-61	consensus_reject=FREQUENCY_CUTOFF	consensus_score=583.9	fisher_strand_p_value=8.77362e-64	frequency=3.761e-01	ks_quality_p_value=1	major_base=G	major_cov=177/27	major_frequency=6.239e-01	minor_base=C	minor_cov=0/123	new_cov=0/123	polymorphism_frequency=3.761e-01	polymorphism_score=262.0	prediction=polymorphism	ref_cov=177/27	total_cov=177/174
RA	47	.	CP028101	1889727	0	C	G	bias_e_value=2.41249e-35	bias_p_value=1.1066e-41	consensus_reject=FREQUENCY_CUTOFF	consensus_score=827.0	fisher_strand_p_value=1.10761e-43	frequency=2.712e-01	ks_quality_p_value=1	major_base=C	major_cov=64/194	major_frequency=7.288e-01	minor_base=G	minor_cov=96/0	new_cov=96/0	polymorphism_frequency=2.712e-01	polymorphism_score=150.8	prediction=polymorphism	ref_cov=64/194	total_cov=197/195
RA	48	.	CP028101	1951385	0	A	G	bias_e_value=1.5314e-49	bias_p_value=7.02443e-56	consensus_reject=FREQUENCY_CUTOFF	consensus_score=671.9	fisher_strand_p_value=5.2861e-58	frequency=3.090e-01	ks_quality_p_value=1	major_base=A	major_cov=70/223	major_frequency=6.910e-01	minor_base=G	minor_cov=131/0	new_cov=131/0	polymorphism_frequency=3.090e-01	polymorphism_score=210.1	prediction=polymorphism	ref_cov=70/223	total_cov=201/223
RA	49	.	CP028101	1951387	0	C	T	bias_e_value=2.08327e-46	bias_p_value=9.55585e-53	consensus_reject=FREQUENCY_CUTOFF	consensus_score=755.4	fisher_strand_p_value=7.60737e-55	frequency=2.921e-01	ks_quality_p_value=1	major_base=C	major_cov=65/221	major_frequency=7.079e-01	minor_base=T	minor_cov=118/0	new_cov=118/0	polymorphism_frequency=2.921e-01	polymorphism_score=83.0	prediction=polymorphism	ref_cov=65/221	total_cov=201/221
JC	50	.	CP028101	1	1	CP028101	2180101	-1	0	alignment_overlap=0	coverage_minus=236	coverage_plus=187	flanking_left=150	flanking_right=150	frequency=1	ignore=CIRCULAR_CHROMOSOME	junction_possible_overlap_registers=149	key=CP028101__1__1__CP028101__2180101__-1__0____150__150__0__0	max_left=149	max_left_minus=148	max_left_plus=149	max_min_left=74	max_min_left_minus=74	max_min_left_plus=74	max_min_right=75	max_min_right_minus=75	max_min_right_plus=74	max_pos_hash_score=298	max_right=149	max_right_minus=149	max_right_plus=149	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.90	new_junction_read_count=427	polymorphism_frequency=1.000e+00	pos_hash_score=182	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=149	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=149	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=423
JC	51	.	CP028101	14577	-1	CP028101	14609	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=NA	junction_possible_overlap_registers=149	key=CP028101__14577__-1__CP028101__14609__-1__0____150__150__1__1	max_left=144	max_left_minus=144	max_left_plus=112	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=40	max_min_right_minus=6	max_min_right_plus=40	max_pos_hash_score=298	max_right=40	max_right_minus=6	max_right_plus=40	neg_log10_pos_hash_p_value=27.1	new_junction_coverage=0.01	new_junction_read_count=3	polymorphism_frequency=NA	pos_hash_score=3	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	52	.	CP028101	15040	1	CP028101	15127	1	0	alignment_overlap=4	coverage_minus=2	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=NA	junction_possible_overlap_registers=145	key=CP028101__15040__1__CP028101__15123__1__4____150__150__1__1	max_left=99	max_left_minus=99	max_left_plus=1	max_min_left=1	max_min_left_minus=0	max_min_left_plus=1	max_min_right=51	max_min_right_minus=51	max_min_right_plus=0	max_pos_hash_score=290	max_right=137	max_right_minus=51	max_right_plus=137	neg_log10_pos_hash_p_value=26.8	new_junction_coverage=0.01	new_junction_read_count=3	polymorphism_frequency=NA	pos_hash_score=3	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=4	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	53	.	CP028101	50376	-1	CP028101	50382	-1	0	alignment_overlap=9	coverage_minus=1	coverage_plus=3	flanking_left=150	flanking_right=150	frequency=7.537e-03	junction_possible_overlap_registers=140	key=CP028101__50376__-1__CP028101__50391__-1__9____150__150__0__0	max_left=115	max_left_minus=69	max_left_plus=115	max_min_left=69	max_min_left_minus=69	max_min_left_plus=8	max_min_right=39	max_min_right_minus=0	max_min_right_plus=39	max_pos_hash_score=280	max_right=133	max_right_minus=72	max_right_plus=133	neg_log10_pos_hash_p_value=25.6	new_junction_coverage=0.01	new_junction_read_count=4	polymorphism_frequency=7.537e-03	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.21	side_1_overlap=9	side_1_possible_overlap_registers=149	side_1_read_count=573	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.15	side_2_overlap=0	side_2_possible_overlap_registers=140	side_2_read_count=515	side_2_redundant=0	total_non_overlap_reads=4
JC	54	.	CP028101	51908	-1	CP028101	51918	-1	0	alignment_overlap=8	coverage_minus=0	coverage_plus=5	flanking_left=150	flanking_right=150	frequency=1.206e-02	junction_possible_overlap_registers=141	key=CP028101__51908__-1__CP028101__51926__-1__8____150__150__0__0	max_left=122	max_left_minus=0	max_left_plus=122	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=57	max_min_right_minus=0	max_min_right_plus=57	max_pos_hash_score=282	max_right=57	max_right_minus=0	max_right_plus=57	neg_log10_pos_hash_p_value=25.6	new_junction_coverage=0.01	new_junction_read_count=5	polymorphism_frequency=1.206e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.90	side_1_overlap=8	side_1_possible_overlap_registers=149	side_1_read_count=429	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=141	side_2_read_count=413	side_2_redundant=0	total_non_overlap_reads=5
JC	55	.	CP028101	82578	-1	CP028101	82548	-1	0	alignment_overlap=30	coverage_minus=3	coverage_plus=7	flanking_left=150	flanking_right=150	frequency=3.137e-02	junction_possible_overlap_registers=119	key=CP028101__82578__-1__CP028101__82578__-1__30____150__150__0__0	max_left=119	max_left_minus=119	max_left_plus=119	max_min_left=58	max_min_left_minus=58	max_min_left_plus=54	max_min_right=9	max_min_right_minus=1	max_min_right_plus=9	max_pos_hash_score=238	max_right=79	max_right_minus=72	max_right_plus=79	neg_log10_pos_hash_p_value=20.3	new_junction_coverage=0.03	new_junction_read_count=10	polymorphism_frequency=3.137e-02	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=30	side_1_possible_overlap_registers=149	side_1_read_count=400	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.79	side_2_overlap=0	side_2_possible_overlap_registers=119	side_2_read_count=298	side_2_redundant=0	total_non_overlap_reads=10
JC	56	.	CP028101	106981	-1	CP028101	106986	-1	0	alignment_overlap=7	coverage_minus=0	coverage_plus=4	flanking_left=150	flanking_right=150	frequency=7.656e-03	junction_possible_overlap_registers=142	key=CP028101__106981__-1__CP028101__106993__-1__7____150__150__0__0	max_left=80	max_left_minus=0	max_left_plus=80	max_min_left=68	max_min_left_minus=0	max_min_left_plus=68	max_min_right=69	max_min_right_minus=0	max_min_right_plus=69	max_pos_hash_score=284	max_right=75	max_right_minus=0	max_right_plus=75	neg_log10_pos_hash_p_value=26.6	new_junction_coverage=0.01	new_junction_read_count=4	polymorphism_frequency=7.656e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.12	side_1_overlap=7	side_1_possible_overlap_registers=149	side_1_read_count=533	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.17	side_2_overlap=0	side_2_possible_overlap_registers=142	side_2_read_count=529	side_2_redundant=0	total_non_overlap_reads=4
JC	57	.	CP028101	119807	-1	CP028101	119814	-1	0	alignment_overlap=10	coverage_minus=0	coverage_plus=6	flanking_left=150	flanking_right=150	frequency=1.465e-02	junction_possible_overlap_registers=139	key=CP028101__119807__-1__CP028101__119824__-1__10____150__150__0__0	max_left=117	max_left_minus=0	max_left_plus=117	max_min_left=39	max_min_left_minus=0	max_min_left_plus=39	max_min_right=68	max_min_right_minus=0	max_min_right_plus=68	max_pos_hash_score=278	max_right=125	max_right_minus=0	max_right_plus=125	neg_log10_pos_hash_p_value=24.7	new_junction_coverage=0.01	new_junction_read_count=6	polymorphism_frequency=1.465e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.90	side_1_overlap=10	side_1_possible_overlap_registers=149	side_1_read_count=428	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=139	side_2_read_count=408	side_2_redundant=0	total_non_overlap_reads=6
JC	58	.	CP028101	152434	-1	CP028101	152442	-1	0	alignment_overlap=7	coverage_minus=1	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=6.171e-03	junction_possible_overlap_registers=142	key=CP028101__152434__-1__CP028101__152449__-1__7____150__150__0__0	max_left=111	max_left_minus=109	max_left_plus=111	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=40	max_min_right_minus=34	max_min_right_plus=40	max_pos_hash_score=284	max_right=40	max_right_minus=34	max_right_plus=40	neg_log10_pos_hash_p_value=26.6	new_junction_coverage=0.01	new_junction_read_count=3	polymorphism_frequency=6.171e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.06	side_1_overlap=7	side_1_possible_overlap_registers=149	side_1_read_count=505	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.07	side_2_overlap=0	side_2_possible_overlap_registers=142	side_2_read_count=485	side_2_redundant=0	total_non_overlap_reads=3
JC	59	.	CP028101	155893	1	CP028101	155934	1	0	alignment_overlap=19	coverage_minus=3	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=9.044e-03	junction_possible_overlap_registers=130	key=CP028101__155893__1__CP028101__155915__1__19____150__150__0__0	max_left=86	max_left_minus=86	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=63	max_min_right_minus=63	max_min_right_plus=0	max_pos_hash_score=260	max_right=63	max_right_minus=63	max_right_plus=0	neg_log10_pos_hash_p_value=25.6	new_junction_coverage=0.01	new_junction_read_count=3	polymorphism_frequency=9.044e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=19	side_1_possible_overlap_registers=149	side_1_read_count=373	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.80	side_2_overlap=0	side_2_possible_overlap_registers=130	side_2_read_count=332	side_2_redundant=0	total_non_overlap_reads=3
JC	60	.	CP028101	158025	1	CP028101	158046	1	0	alignment_overlap=9	coverage_minus=5	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=1.299e-02	junction_possible_overlap_registers=140	key=CP028101__158025__1__CP028101__158037__1__9____150__150__0__0	max_left=94	max_left_minus=94	max_left_plus=0	max_min_left=54	max_min_left_minus=54	max_min_left_plus=0	max_min_right=47	max_min_right_minus=47	max_min_right_plus=0	max_pos_hash_score=280	max_right=127	max_right_minus=127	max_right_plus=0	neg_log10_pos_hash_p_value=26.4	new_junction_coverage=0.01	new_junction_read_count=5	polymorphism_frequency=1.299e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=9	side_1_possible_overlap_registers=149	side_1_read_count=399	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.86	side_2_overlap=0	side_2_possible_overlap_registers=140	side_2_read_count=385	side_2_redundant=0	total_non_overlap_reads=5
JC	61	.	CP028101	173253	-1	CP028101	173254	-1	0	alignment_overlap=9	coverage_minus=0	coverage_plus=4	flanking_left=150	flanking_right=150	frequency=NA	junction_possible_overlap_registers=140	key=CP028101__173253__-1__CP028101__173263__-1__9____150__150__1__1	max_left=117	max_left_minus=0	max_left_plus=117	max_min_left=57	max_min_left_minus=0	max_min_left_plus=57	max_min_right=42	max_min_right_minus=0	max_min_right_plus=42	max_pos_hash_score=280	max_right=110	max_right_minus=0	max_right_plus=110	neg_log10_pos_hash_p_value=25.6	new_junction_coverage=0.01	new_junction_read_count=4	polymorphism_frequency=NA	pos_hash_score=4	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=9	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=4
JC	62	.	CP028101	177379	1	CP028101	177406	1	0	alignment_overlap=8	coverage_minus=9	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=2.111e-02	junction_possible_overlap_registers=141	key=CP028101__177379__1__CP028101__177398__1__8____150__150__0__0	max_left=86	max_left_minus=86	max_left_plus=0	max_min_left=56	max_min_left_minus=56	max_min_left_plus=0	max_min_right=70	max_min_right_minus=70	max_min_right_plus=0	max_pos_hash_score=282	max_right=107	max_right_minus=107	max_right_plus=0	neg_log10_pos_hash_p_value=25.6	new_junction_coverage=0.02	new_junction_read_count=9	polymorphism_frequency=2.111e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.92	side_1_overlap=8	side_1_possible_overlap_registers=149	side_1_read_count=435	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=141	side_2_read_count=423	side_2_redundant=0	total_non_overlap_reads=9
JC	63	.	CP028101	205652	-1	CP028101	205738	-1	0	alignment_overlap=2	coverage_minus=1	coverage_plus=3	flanking_left=150	flanking_right=150	frequency=7.536e-03	junction_possible_overlap_registers=147	key=CP028101__205652__-1__CP028101__205740__-1__2____150__150__0__0	max_left=55	max_left_minus=55	max_left_plus=43	max_min_left=55	max_min_left_minus=55	max_min_left_plus=43	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=294	max_right=144	max_right_minus=93	max_right_plus=144	neg_log10_pos_hash_p_value=27.0	new_junction_coverage=0.01	new_junction_read_count=4	polymorphism_frequency=7.536e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.16	side_1_overlap=2	side_1_possible_overlap_registers=149	side_1_read_count=551	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.09	side_2_overlap=0	side_2_possible_overlap_registers=147	side_2_read_count=510	side_2_redundant=0	total_non_overlap_reads=4
JC	64	.	CP028101	245041	-1	CP028101	245129	-1	0	alignment_overlap=5	coverage_minus=1	coverage_plus=3	flanking_left=150	flanking_right=150	frequency=7.641e-03	junction_possible_overlap_registers=144	key=CP028101__245041__-1__CP028101__245134__-1__5____150__150__0__0	max_left=104	max_left_minus=104	max_left_plus=79	max_min_left=16	max_min_left_minus=0	max_min_left_plus=16	max_min_right=66	max_min_right_minus=41	max_min_right_plus=66	max_pos_hash_score=288	max_right=129	max_right_minus=41	max_right_plus=129	neg_log10_pos_hash_p_value=26.7	new_junction_coverage=0.01	new_junction_read_count=4	polymorphism_frequency=7.641e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.19	side_1_overlap=5	side_1_possible_overlap_registers=149	side_1_read_count=565	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.07	side_2_overlap=0	side_2_possible_overlap_registers=144	side_2_read_count=493	side_2_redundant=0	total_non_overlap_reads=4
JC	65	.	CP028101	256136	-1	CP028101	256141	-1	0	alignment_overlap=8	coverage_minus=1	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=5.292e-03	junction_possible_overlap_registers=141	key=CP028101__256136__-1__CP028101__256149__-1__8____150__150__0__0	max_left=124	max_left_minus=124	max_left_plus=102	max_min_left=61	max_min_left_minus=0	max_min_left_plus=61	max_min_right=40	max_min_right_minus=18	max_min_right_plus=40	max_pos_hash_score=282	max_right=81	max_right_minus=18	max_right_plus=81	neg_log10_pos_hash_p_value=26.5	new_junction_coverage=0.01	new_junction_read_count=3	polymorphism_frequency=5.292e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.26	side_1_overlap=8	side_1_possible_overlap_registers=149	side_1_read_count=598	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.25	side_2_overlap=0	side_2_possible_overlap_registers=141	side_2_read_count=562	side_2_redundant=0	total_non_overlap_reads=3
JC	66	.	CP028101	256236	1	CP028101	256261	1	0	alignment_overlap=7	coverage_minus=3	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=5.374e-03	junction_possible_overlap_registers=142	key=CP028101__256236__1__CP028101__256254__1__7____150__150__0__0	max_left=142	max_left_minus=142	max_left_plus=0	max_min_left=33	max_min_left_minus=33	max_min_left_plus=0	max_min_right=34	max_min_right_minus=34	max_min_right_plus=0	max_pos_hash_score=284	max_right=110	max_right_minus=110	max_right_plus=0	neg_log10_pos_hash_p_value=26.6	new_junction_coverage=0.01	new_junction_read_count=3	polymorphism_frequency=5.374e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.28	side_1_overlap=7	side_1_possible_overlap_registers=149	side_1_read_count=606	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.18	side_2_overlap=0	side_2_possible_overlap_registers=142	side_2_read_count=533	side_2_redundant=0	total_non_overlap_reads=3
JC	67	.	CP028101	256748	-1	CP028101	256759	-1	0	alignment_overlap=8	coverage_minus=1	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=5.772e-03	junction_possible_overlap_registers=141	key=CP028101__256748__-1__CP028101__256767__-1__8____150__150__0__0	max_left=129	max_left_minus=129	max_left_plus=117	max_min_left=62	max_min_left_minus=0	max_min_left_plus=62	max_min_right=25	max_min_right_minus=13	max_min_right_plus=25	max_pos_hash_score=282	max_right=80	max_right_minus=13	max_right_plus=80	neg_log10_pos_hash_p_value=26.5	new_junction_coverage=0.01	new_junction_read_count=3	polymorphism_frequency=5.772e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.12	side_1_overlap=8	side_1_possible_overlap_registers=149	side_1_read_count=531	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.18	side_2_overlap=0	side_2_possible_overlap_registers=141	side_2_read_count=531	side_2_redundant=0	total_non_overlap_reads=3
JC	68	.	CP028101	272953	-1	CP028101	272956	-1	0	alignment_overlap=11	coverage_minus=2	coverage_plus=4	flanking_left=150	flanking_right=150	frequency=1.516e-02	junction_possible_overlap_registers=138	key=CP028101__272953__-1__CP028101__272967__-1__11____150__150__0__0	max_left=115	max_left_minus=115	max_left_plus=115	max_min_left=41	max_min_left_minus=0	max_min_left_plus=41	max_min_right=64	max_min_right_minus=25	max_min_right_plus=64	max_pos_hash_score=276	max_right=98	max_right_minus=25	max_right_plus=98	neg_log10_pos_hash_p_value=24.6	new_junction_coverage=0.02	new_junction_read_count=7	polymorphism_frequency=1.516e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.05	side_1_overlap=11	side_1_possible_overlap_registers=149	side_1_read_count=498	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.02	side_2_overlap=0	side_2_possible_overlap_registers=138	side_2_read_count=448	side_2_redundant=0	total_non_overlap_reads=6
JC	69	.	CP028101	288692	1	CP028101	288763	1	0	alignment_overlap=5	coverage_minus=2	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=6.389e-03	junction_possible_overlap_registers=144	key=CP028101__288692__1__CP028101__288758__1__5____150__150__0__0	max_left=111	max_left_minus=111	max_left_plus=39	max_min_left=60	max_min_left_minus=60	max_min_left_plus=39	max_min_right=34	max_min_right_minus=34	max_min_right_plus=0	max_pos_hash_score=288	max_right=106	max_right_minus=91	max_right_plus=106	neg_log10_pos_hash_p_value=26.7	new_junction_coverage=0.01	new_junction_read_count=3	polymorphism_frequency=6.389e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.06	side_1_overlap=5	side_1_possible_overlap_registers=149	side_1_read_count=503	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.97	side_2_overlap=0	side_2_possible_overlap_registers=144	side_2_read_count=447	side_2_redundant=0	total_non_overlap_reads=3
JC	70	.	CP028101	311032	1	CP028101	311048	1	0	alignment_overlap=7	coverage_minus=4	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=6.443e-03	junction_possible_overlap_registers=142	key=CP028101__311032__1__CP028101__311041__1__7____150__150__0__0	max_left=59	max_left_minus=59	max_left_plus=0	max_min_left=59	max_min_left_minus=59	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=284	max_right=140	max_right_minus=140	max_right_plus=0	neg_log10_pos_hash_p_value=25.7	new_junction_coverage=0.01	new_junction_read_count=4	polymorphism_frequency=6.443e-03	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.36	side_1_overlap=7	side_1_possible_overlap_registers=149	side_1_read_count=647	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.36	side_2_overlap=0	side_2_possible_overlap_registers=142	side_2_read_count=617	side_2_redundant=0	total_non_overlap_reads=4
JC	71	.	CP028101	311512	1	CP028101	311573	1	0	alignment_overlap=28	coverage_minus=27	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=6.299e-02	junction_possible_overlap_registers=121	key=CP028101__311512__1__CP028101__311545__1__28____150__150__0__0	max_left=113	max_left_minus=113	max_left_plus=110	max_min_left=55	max_min_left_minus=55	max_min_left_plus=1	max_min_right=48	max_min_right_minus=48	max_min_right_plus=12	max_pos_hash_score=242	max_right=116	max_right_minus=114	max_right_plus=116	neg_log10_pos_hash_p_value=14.8	new_junction_coverage=0.08	new_junction_read_count=29	polymorphism_frequency=6.299e-02	pos_hash_score=22	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.13	side_1_overlap=28	side_1_possible_overlap_registers=149	side_1_read_count=539	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.10	side_2_overlap=0	side_2_possible_overlap_registers=121	side_2_read_count=425	side_2_redundant=0	total_non_overlap_reads=29
JC	72	.	CP028101	332833	-1	CP028101	332842	-1	0	alignment_overlap=8	coverage_minus=2	coverage_plus=16	flanking_left=150	flanking_right=150	frequency=NA	junction_possible_overlap_registers=141	key=CP028101__332833__-1__CP028101__332850__-1__8____150__150__1__1	max_left=130	max_left_minus=80	max_left_plus=130	max_min_left=67	max_min_left_minus=14	max_min_left_plus=67	max_min_right=62	max_min_right_minus=62	max_min_right_plus=51	max_pos_hash_score=282	max_right=128	max_right_minus=128	max_right_plus=84	neg_log10_pos_hash_p_value=19.2	new_junction_coverage=0.04	new_junction_read_count=18	polymorphism_frequency=NA	pos_hash_score=15	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=8	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=18
JC	73	.	CP028101	333758	1	CP028101	333794	1	0	alignment_overlap=7	coverage_minus=3	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=NA	junction_possible_overlap_registers=142	key=CP028101__333758__1__CP028101__333787__1__7____150__150__1__1	max_left=48	max_left_minus=48	max_left_plus=0	max_min_left=48	max_min_left_minus=48	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=284	max_right=112	max_right_minus=112	max_right_plus=0	neg_log10_pos_hash_p_value=26.6	new_junction_coverage=0.01	new_junction_read_count=3	polymorphism_frequency=NA	pos_hash_score=3	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=7	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	74	.	CP028101	334989	-1	CP028101	334994	-1	0	alignment_overlap=8	coverage_minus=0	coverage_plus=7	flanking_left=150	flanking_right=150	frequency=NA	junction_possible_overlap_registers=141	key=CP028101__334989__-1__CP028101__335002__-1__8____150__150__1__1	max_left=124	max_left_minus=0	max_left_plus=124	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=67	max_min_right_minus=0	max_min_right_plus=67	max_pos_hash_score=282	max_right=67	max_right_minus=0	max_right_plus=67	neg_log10_pos_hash_p_value=25.6	new_junction_coverage=0.02	new_junction_read_count=7	polymorphism_frequency=NA	pos_hash_score=4	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=8	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=7
JC	75	.	CP028101	335156	-1	CP028101	335163	-1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=5	flanking_left=150	flanking_right=150	frequency=NA	junction_possible_overlap_registers=139	key=CP028101__335156__-1__CP028101__335173__-1__10____150__150__1__1	max_left=126	max_left_minus=20	max_left_plus=126	max_min_left=20	max_min_left_minus=20	max_min_left_plus=0	max_min_right=67	max_min_right_minus=0	max_min_right_plus=67	max_pos_hash_score=278	max_right=120	max_right_minus=120	max_right_plus=67	neg_log10_pos_hash_p_value=24.0	new_junction_coverage=0.01	new_junction_read_count=6	polymorphism_frequency=NA	pos_hash_score=6	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=10	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=6
JC	76	.	CP028101	336792	1	CP028101	336794	-1	0	alignment_overlap=2	coverage_minus=5	coverage_plus=4	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=147	key=CP028101__336792__1__CP028101__336796__-1__2____150__150__0__1	max_left=4	max_left_minus=4	max_left_plus=4	max_min_left=4	max_min_left_minus=4	max_min_left_plus=4	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=294	max_right=144	max_right_minus=144	max_right_plus=144	neg_log10_pos_hash_p_value=27.0	new_junction_coverage=0.04	new_junction_read_count=19	polymorphism_frequency=9.506e-01	pos_hash_score=3	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=149	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=9
JC	77	.	CP028101	336796	-1	CP028101	534770	-1	-4	alignment_overlap=-4	coverage_minus=335	coverage_plus=208	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=145	key=CP028101__336796__-1__CP028101__534770__-1__-4__TTTT__150__150__1__0	max_left=140	max_left_minus=140	max_left_plus=140	max_min_left=72	max_min_left_minus=71	max_min_left_plus=72	max_min_right=73	max_min_right_minus=72	max_min_right_plus=73	max_pos_hash_score=290	max_right=145	max_right_minus=145	max_right_plus=144	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=1.21	new_junction_read_count=558	polymorphism_frequency=9.983e-01	pos_hash_score=171	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=149	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=543	unique_read_sequence=TTTT
JC	78	.	CP028101	337002	1	CP028101	337029	1	0	alignment_overlap=8	coverage_minus=6	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=1.018e-02	junction_possible_overlap_registers=141	key=CP028101__337002__1__CP028101__337021__1__8____150__150__0__0	max_left=129	max_left_minus=129	max_left_plus=82	max_min_left=24	max_min_left_minus=24	max_min_left_plus=0	max_min_right=67	max_min_right_minus=67	max_min_right_plus=56	max_pos_hash_score=282	max_right=118	max_right_minus=118	max_right_plus=56	neg_log10_pos_hash_p_value=24.1	new_junction_coverage=0.02	new_junction_read_count=7	polymorphism_frequency=1.018e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.51	side_1_overlap=8	side_1_possible_overlap_registers=149	side_1_read_count=719	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.51	side_2_overlap=0	side_2_possible_overlap_registers=141	side_2_read_count=681	side_2_redundant=0	total_non_overlap_reads=7
JC	79	.	CP028101	366685	-1	CP028101	366686	-1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=6.678e-03	junction_possible_overlap_registers=139	key=CP028101__366685__-1__CP028101__366696__-1__10____150__150__0__0	max_left=76	max_left_minus=8	max_left_plus=76	max_min_left=8	max_min_left_minus=8	max_min_left_plus=0	max_min_right=67	max_min_right_minus=0	max_min_right_plus=67	max_pos_hash_score=278	max_right=132	max_right_minus=132	max_right_plus=67	neg_log10_pos_hash_p_value=26.4	new_junction_coverage=0.01	new_junction_read_count=3	polymorphism_frequency=6.678e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.99	side_1_overlap=10	side_1_possible_overlap_registers=149	side_1_read_count=470	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.02	side_2_overlap=0	side_2_possible_overlap_registers=139	side_2_read_count=454	side_2_redundant=0	total_non_overlap_reads=3
JC	80	.	CP028101	373433	1	CP028101	373452	1	0	alignment_overlap=8	coverage_minus=5	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=9.604e-03	junction_possible_overlap_registers=141	key=CP028101__373433__1__CP028101__373444__1__8____150__150__0__0	max_left=83	max_left_minus=83	max_left_plus=0	max_min_left=67	max_min_left_minus=67	max_min_left_plus=0	max_min_right=59	max_min_right_minus=59	max_min_right_plus=0	max_pos_hash_score=282	max_right=130	max_right_minus=130	max_right_plus=0	neg_log10_pos_hash_p_value=25.6	new_junction_coverage=0.01	new_junction_read_count=5	polymorphism_frequency=9.604e-03	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.13	side_1_overlap=8	side_1_possible_overlap_registers=149	side_1_read_count=536	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.17	side_2_overlap=0	side_2_possible_overlap_registers=141	side_2_read_count=524	side_2_redundant=0	total_non_overlap_reads=5
JC	81	.	CP028101	379638	-1	CP028101	379645	-1	0	alignment_overlap=14	coverage_minus=0	coverage_plus=4	flanking_left=150	flanking_right=150	frequency=8.204e-03	junction_possible_overlap_registers=135	key=CP028101__379638__-1__CP028101__379659__-1__14____150__150__0__0	max_left=123	max_left_minus=0	max_left_plus=123	max_min_left=67	max_min_left_minus=0	max_min_left_plus=67	max_min_right=60	max_min_right_minus=0	max_min_right_plus=60	max_pos_hash_score=270	max_right=69	max_right_minus=0	max_right_plus=69	neg_log10_pos_hash_p_value=26.1	new_junction_coverage=0.01	new_junction_read_count=4	polymorphism_frequency=8.204e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.14	side_1_overlap=14	side_1_possible_overlap_registers=149	side_1_read_count=541	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.11	side_2_overlap=0	side_2_possible_overlap_registers=135	side_2_read_count=477	side_2_redundant=0	total_non_overlap_reads=4
JC	82	.	CP028101	396687	1	CP028101	396719	1	0	alignment_overlap=13	coverage_minus=6	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=1.807e-02	junction_possible_overlap_registers=136	key=CP028101__396687__1__CP028101__396706__1__13____150__150__0__0	max_left=125	max_left_minus=125	max_left_plus=53	max_min_left=53	max_min_left_minus=52	max_min_left_plus=53	max_min_right=47	max_min_right_minus=47	max_min_right_plus=0	max_pos_hash_score=272	max_right=85	max_right_minus=85	max_right_plus=84	neg_log10_pos_hash_p_value=23.7	new_junction_coverage=0.02	new_junction_read_count=7	polymorphism_frequency=1.807e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.87	side_1_overlap=13	side_1_possible_overlap_registers=149	side_1_read_count=414	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.88	side_2_overlap=0	side_2_possible_overlap_registers=136	side_2_read_count=383	side_2_redundant=0	total_non_overlap_reads=7
JC	83	.	CP028101	398847	1	CP028101	398922	1	0	alignment_overlap=3	coverage_minus=4	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=7.974e-03	junction_possible_overlap_registers=146	key=CP028101__398847__1__CP028101__398919__1__3____150__150__0__0	max_left=101	max_left_minus=101	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=67	max_min_right_minus=67	max_min_right_plus=0	max_pos_hash_score=292	max_right=67	max_right_minus=67	max_right_plus=0	neg_log10_pos_hash_p_value=26.9	new_junction_coverage=0.01	new_junction_read_count=4	polymorphism_frequency=7.974e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.12	side_1_overlap=3	side_1_possible_overlap_registers=149	side_1_read_count=532	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.02	side_2_overlap=0	side_2_possible_overlap_registers=146	side_2_read_count=474	side_2_redundant=0	total_non_overlap_reads=4
JC	84	.	CP028101	406451	-1	CP028101	406544	-1	0	alignment_overlap=5	coverage_minus=0	coverage_plus=6	flanking_left=150	flanking_right=150	frequency=1.152e-02	junction_possible_overlap_registers=144	key=CP028101__406451__-1__CP028101__406549__-1__5____150__150__0__0	max_left=38	max_left_minus=0	max_left_plus=38	max_min_left=38	max_min_left_minus=0	max_min_left_plus=38	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=288	max_right=134	max_right_minus=0	max_right_plus=134	neg_log10_pos_hash_p_value=26.7	new_junction_coverage=0.01	new_junction_read_count=6	polymorphism_frequency=1.152e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.16	side_1_overlap=5	side_1_possible_overlap_registers=149	side_1_read_count=550	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.08	side_2_overlap=0	side_2_possible_overlap_registers=144	side_2_read_count=498	side_2_redundant=0	total_non_overlap_reads=6
JC	85	.	CP028101	421587	1	CP028101	421611	1	0	alignment_overlap=11	coverage_minus=4	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=9.375e-03	junction_possible_overlap_registers=138	key=CP028101__421587__1__CP028101__421600__1__11____150__150__0__0	max_left=124	max_left_minus=124	max_left_plus=0	max_min_left=50	max_min_left_minus=50	max_min_left_plus=0	max_min_right=36	max_min_right_minus=36	max_min_right_plus=0	max_pos_hash_score=276	max_right=108	max_right_minus=108	max_right_plus=0	neg_log10_pos_hash_p_value=25.4	new_junction_coverage=0.01	new_junction_read_count=4	polymorphism_frequency=9.375e-03	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.96	side_1_overlap=11	side_1_possible_overlap_registers=149	side_1_read_count=456	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.96	side_2_overlap=0	side_2_possible_overlap_registers=138	side_2_read_count=423	side_2_redundant=0	total_non_overlap_reads=4
JC	86	.	CP028101	421597	-1	CP028101	421599	-1	0	alignment_overlap=11	coverage_minus=0	coverage_plus=7	flanking_left=150	flanking_right=150	frequency=1.626e-02	junction_possible_overlap_registers=138	key=CP028101__421597__-1__CP028101__421610__-1__11____150__150__0__0	max_left=125	max_left_minus=0	max_left_plus=125	max_min_left=60	max_min_left_minus=0	max_min_left_plus=60	max_min_right=66	max_min_right_minus=0	max_min_right_plus=66	max_pos_hash_score=276	max_right=107	max_right_minus=0	max_right_plus=107	neg_log10_pos_hash_p_value=24.6	new_junction_coverage=0.02	new_junction_read_count=7	polymorphism_frequency=1.626e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.96	side_1_overlap=11	side_1_possible_overlap_registers=149	side_1_read_count=457	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.96	side_2_overlap=0	side_2_possible_overlap_registers=138	side_2_read_count=424	side_2_redundant=0	total_non_overlap_reads=7
JC	87	.	CP028101	425189	1	CP028101	425207	1	0	alignment_overlap=6	coverage_minus=2	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=4.787e-03	junction_possible_overlap_registers=143	key=CP028101__425189__1__CP028101__425201__1__6____150__150__0__0	max_left=103	max_left_minus=103	max_left_plus=10	max_min_left=10	max_min_left_minus=0	max_min_left_plus=10	max_min_right=71	max_min_right_minus=71	max_min_right_plus=0	max_pos_hash_score=286	max_right=134	max_right_minus=71	max_right_plus=134	neg_log10_pos_hash_p_value=26.7	new_junction_coverage=0.01	new_junction_read_count=3	polymorphism_frequency=4.787e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.39	side_1_overlap=6	side_1_possible_overlap_registers=149	side_1_read_count=660	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.35	side_2_overlap=0	side_2_possible_overlap_registers=143	side_2_read_count=614	side_2_redundant=0	total_non_overlap_reads=3
JC	88	.	CP028101	471533	-1	CP028101	471534	-1	0	alignment_overlap=10	coverage_minus=0	coverage_plus=3	flanking_left=150	flanking_right=150	frequency=5.155e-03	junction_possible_overlap_registers=139	key=CP028101__471533__-1__CP028101__471544__-1__10____150__150__0__0	max_left=127	max_left_minus=0	max_left_plus=127	max_min_left=53	max_min_left_minus=0	max_min_left_plus=53	max_min_right=60	max_min_right_minus=0	max_min_right_plus=60	max_pos_hash_score=278	max_right=87	max_right_minus=0	max_right_plus=87	neg_log10_pos_hash_p_value=26.4	new_junction_coverage=0.01	new_junction_read_count=3	polymorphism_frequency=5.155e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.29	side_1_overlap=10	side_1_possible_overlap_registers=149	side_1_read_count=611	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.33	side_2_overlap=0	side_2_possible_overlap_registers=139	side_2_read_count=588	side_2_redundant=0	total_non_overlap_reads=3
JC	89	.	CP028101	476252	-1	CP028101	476264	-1	0	alignment_overlap=11	coverage_minus=0	coverage_plus=5	flanking_left=150	flanking_right=150	frequency=8.828e-03	junction_possible_overlap_registers=138	key=CP028101__476252__-1__CP028101__476275__-1__11____150__150__0__0	max_left=109	max_left_minus=0	max_left_plus=109	max_min_left=7	max_min_left_minus=0	max_min_left_plus=7	max_min_right=52	max_min_right_minus=0	max_min_right_plus=52	max_pos_hash_score=276	max_right=135	max_right_minus=0	max_right_plus=135	neg_log10_pos_hash_p_value=25.4	new_junction_coverage=0.01	new_junction_read_count=5	polymorphism_frequency=8.828e-03	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.29	side_1_overlap=11	side_1_possible_overlap_registers=149	side_1_read_count=613	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.26	side_2_overlap=0	side_2_possible_overlap_registers=138	side_2_read_count=555	side_2_redundant=0	total_non_overlap_reads=5
JC	90	.	CP028101	492005	-1	CP028101	492018	-1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=4	flanking_left=150	flanking_right=150	frequency=NA	junction_possible_overlap_registers=146	key=CP028101__492005__-1__CP028101__492021__-1__3____150__150__1__1	max_left=131	max_left_minus=0	max_left_plus=131	max_min_left=64	max_min_left_minus=0	max_min_left_plus=64	max_min_right=71	max_min_right_minus=0	max_min_right_plus=71	max_pos_hash_score=292	max_right=83	max_right_minus=0	max_right_plus=83	neg_log10_pos_hash_p_value=26.0	new_junction_coverage=0.01	new_junction_read_count=4	polymorphism_frequency=NA	pos_hash_score=4	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=3	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=4
JC	91	.	CP028101	493357	1	CP028101	493377	1	0	alignment_overlap=8	coverage_minus=3	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=NA	junction_possible_overlap_registers=141	key=CP028101__493357__1__CP028101__493369__1__8____150__150__1__1	max_left=99	max_left_minus=99	max_left_plus=0	max_min_left=18	max_min_left_minus=18	max_min_left_plus=0	max_min_right=68	max_min_right_minus=68	max_min_right_plus=0	max_pos_hash_score=282	max_right=124	max_right_minus=124	max_right_plus=0	neg_log10_pos_hash_p_value=26.5	new_junction_coverage=0.01	new_junction_read_count=3	polymorphism_frequency=NA	pos_hash_score=3	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=8	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	92	.	CP028101	493674	-1	CP028101	493722	1	-54	alignment_overlap=-54	coverage_minus=164	coverage_plus=165	flanking_left=150	flanking_right=150	frequency=NA	junction_possible_overlap_registers=95	key=CP028101__493674__-1__CP028101__493722__1__-54__GTTCAAGGAACAACAGCCACTCCAGAAGCAAGTGAAAATAAATAGGGGGTCGAG__150__150__1__1	max_left=95	max_left_minus=95	max_left_plus=94	max_min_left=47	max_min_left_minus=46	max_min_left_plus=47	max_min_right=47	max_min_right_minus=47	max_min_right_plus=47	max_pos_hash_score=190	max_right=95	max_right_minus=95	max_right_plus=94	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.12	new_junction_read_count=338	polymorphism_frequency=NA	pos_hash_score=118	prediction=unknown	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=329	unique_read_sequence=GTTCAAGGAACAACAGCCACTCCAGAAGCAAGTGAAAATAAATAGGGGGTCGAG
JC	93	.	CP028101	515137	1	CP028101	515178	1	0	alignment_overlap=18	coverage_minus=13	coverage_plus=3	flanking_left=150	flanking_right=150	frequency=3.378e-02	junction_possible_overlap_registers=131	key=CP028101__515137__1__CP028101__515160__1__18____150__150__0__0	max_left=120	max_left_minus=120	max_left_plus=78	max_min_left=49	max_min_left_minus=49	max_min_left_plus=0	max_min_right=58	max_min_right_minus=58	max_min_right_plus=54	max_pos_hash_score=262	max_right=111	max_right_minus=111	max_right_plus=54	neg_log10_pos_hash_p_value=22.0	new_junction_coverage=0.04	new_junction_read_count=16	polymorphism_frequency=3.378e-02	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.13	side_1_overlap=18	side_1_possible_overlap_registers=149	side_1_read_count=535	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.07	side_2_overlap=0	side_2_possible_overlap_registers=131	side_2_read_count=445	side_2_redundant=0	total_non_overlap_reads=16
JC	94	.	CP028101	539713	1	CP028101	539737	1	0	alignment_overlap=4	coverage_minus=6	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=1.171e-02	junction_possible_overlap_registers=145	key=CP028101__539713__1__CP028101__539733__1__4____150__150__0__0	max_left=134	max_left_minus=134	max_left_plus=0	max_min_left=31	max_min_left_minus=31	max_min_left_plus=0	max_min_right=63	max_min_right_minus=63	max_min_right_plus=0	max_pos_hash_score=290	max_right=136	max_right_minus=136	max_right_plus=0	neg_log10_pos_hash_p_value=25.2	new_junction_coverage=0.01	new_junction_read_count=6	polymorphism_frequency=1.171e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.06	side_1_overlap=4	side_1_possible_overlap_registers=149	side_1_read_count=502	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.13	side_2_overlap=0	side_2_possible_overlap_registers=145	side_2_read_count=524	side_2_redundant=0	total_non_overlap_reads=6
JC	95	.	CP028101	539881	1	CP028101	539907	1	0	alignment_overlap=10	coverage_minus=5	coverage_plus=3	flanking_left=150	flanking_right=150	frequency=1.719e-02	junction_possible_overlap_registers=139	key=CP028101__539881__1__CP028101__539897__1__10____150__150__0__0	max_left=135	max_left_minus=135	max_left_plus=63	max_min_left=63	max_min_left_minus=47	max_min_left_plus=63	max_min_right=47	max_min_right_minus=47	max_min_right_plus=0	max_pos_hash_score=278	max_right=136	max_right_minus=125	max_right_plus=136	neg_log10_pos_hash_p_value=22.7	new_junction_coverage=0.02	new_junction_read_count=8	polymorphism_frequency=1.719e-02	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.04	side_1_overlap=10	side_1_possible_overlap_registers=149	side_1_read_count=494	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.02	side_2_overlap=0	side_2_possible_overlap_registers=139	side_2_read_count=454	side_2_redundant=0	total_non_overlap_reads=8
JC	96	.	CP028101	556221	1	CP028101	556251	1	0	alignment_overlap=14	coverage_minus=7	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=1.760e-02	junction_possible_overlap_registers=135	key=CP028101__556221__1__CP028101__556237__1__14____150__150__0__0	max_left=97	max_left_minus=97	max_left_plus=2	max_min_left=44	max_min_left_minus=44	max_min_left_plus=2	max_min_right=62	max_min_right_minus=62	max_min_right_plus=0	max_pos_hash_score=270	max_right=133	max_right_minus=106	max_right_plus=133	neg_log10_pos_hash_p_value=23.0	new_junction_coverage=0.02	new_junction_read_count=8	polymorphism_frequency=1.760e-02	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.03	side_1_overlap=14	side_1_possible_overlap_registers=149	side_1_read_count=490	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.04	side_2_overlap=0	side_2_possible_overlap_registers=135	side_2_read_count=449	side_2_redundant=0	total_non_overlap_reads=8
JC	97	.	CP028101	574154	-1	CP028101	574176	-1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=6.242e-03	junction_possible_overlap_registers=139	key=CP028101__574154__-1__CP028101__574186__-1__10____150__150__0__0	max_left=122	max_left_minus=122	max_left_plus=86	max_min_left=57	max_min_left_minus=0	max_min_left_plus=57	max_min_right=54	max_min_right_minus=18	max_min_right_plus=54	max_pos_hash_score=278	max_right=83	max_right_minus=18	max_right_plus=83	neg_log10_pos_hash_p_value=26.4	new_junction_coverage=0.01	new_junction_read_count=3	polymorphism_frequency=6.242e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.06	side_1_overlap=10	side_1_possible_overlap_registers=149	side_1_read_count=504	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.09	side_2_overlap=0	side_2_possible_overlap_registers=139	side_2_read_count=485	side_2_redundant=0	total_non_overlap_reads=3
JC	98	.	CP028101	574164	-1	CP028101	574169	-1	0	alignment_overlap=11	coverage_minus=1	coverage_plus=7	flanking_left=150	flanking_right=150	frequency=1.609e-02	junction_possible_overlap_registers=138	key=CP028101__574164__-1__CP028101__574180__-1__11____150__150__0__0	max_left=126	max_left_minus=126	max_left_plus=114	max_min_left=68	max_min_left_minus=0	max_min_left_plus=68	max_min_right=68	max_min_right_minus=13	max_min_right_plus=68	max_pos_hash_score=276	max_right=133	max_right_minus=13	max_right_plus=133	neg_log10_pos_hash_p_value=22.6	new_junction_coverage=0.02	new_junction_read_count=8	polymorphism_frequency=1.609e-02	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.10	side_1_overlap=11	side_1_possible_overlap_registers=149	side_1_read_count=524	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.12	side_2_overlap=0	side_2_possible_overlap_registers=138	side_2_read_count=493	side_2_redundant=0	total_non_overlap_reads=8
JC	99	.	CP028101	576564	1	CP028101	576593	1	0	alignment_overlap=9	coverage_minus=4	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=7.858e-03	junction_possible_overlap_registers=140	key=CP028101__576564__1__CP028101__576584__1__9____150__150__0__0	max_left=140	max_left_minus=140	max_left_plus=0	max_min_left=58	max_min_left_minus=58	max_min_left_plus=0	max_min_right=60	max_min_right_minus=60	max_min_right_plus=0	max_pos_hash_score=280	max_right=119	max_right_minus=119	max_right_plus=0	neg_log10_pos_hash_p_value=25.6	new_junction_coverage=0.01	new_junction_read_count=4	polymorphism_frequency=7.858e-03	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.08	side_1_overlap=9	side_1_possible_overlap_registers=149	side_1_read_count=512	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.18	side_2_overlap=0	side_2_possible_overlap_registers=140	side_2_read_count=529	side_2_redundant=0	total_non_overlap_reads=4
JC	100	.	CP028101	588771	1	CP028101	588792	1	0	alignment_overlap=7	coverage_minus=4	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=7.111e-03	junction_possible_overlap_registers=142	key=CP028101__588771__1__CP028101__588785__1__7____150__150__0__0	max_left=99	max_left_minus=99	max_left_plus=0	max_min_left=59	max_min_left_minus=59	max_min_left_plus=0	max_min_right=44	max_min_right_minus=44	max_min_right_plus=0	max_pos_hash_score=284	max_right=118	max_right_minus=118	max_right_plus=0	neg_log10_pos_hash_p_value=26.6	new_junction_coverage=0.01	new_junction_read_count=4	polymorphism_frequency=7.111e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.21	side_1_overlap=7	side_1_possible_overlap_registers=149	side_1_read_count=574	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.26	side_2_overlap=0	side_2_possible_overlap_registers=142	side_2_read_count=570	side_2_redundant=0	total_non_overlap_reads=4
JC	101	.	CP028101	593883	1	CP028101	593907	1	0	alignment_overlap=10	coverage_minus=3	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=7.680e-03	junction_possible_overlap_registers=139	key=CP028101__593883__1__CP028101__593897__1__10____150__150__0__0	max_left=88	max_left_minus=88	max_left_plus=22	max_min_left=48	max_min_left_minus=48	max_min_left_plus=22	max_min_right=60	max_min_right_minus=60	max_min_right_plus=0	max_pos_hash_score=278	max_right=118	max_right_minus=92	max_right_plus=118	neg_log10_pos_hash_p_value=25.5	new_junction_coverage=0.01	new_junction_read_count=4	polymorphism_frequency=7.680e-03	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.17	side_1_overlap=10	side_1_possible_overlap_registers=149	side_1_read_count=556	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.16	side_2_overlap=0	side_2_possible_overlap_registers=139	side_2_read_count=515	side_2_redundant=0	total_non_overlap_reads=4
JC	102	.	CP028101	594373	-1	CP028101	594417	-1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=5	flanking_left=150	flanking_right=150	frequency=9.930e-03	junction_possible_overlap_registers=149	key=CP028101__594373__-1__CP028101__594417__-1__0____150__150__0__0	max_left=89	max_left_minus=0	max_left_plus=89	max_min_left=62	max_min_left_minus=0	max_min_left_plus=62	max_min_right=61	max_min_right_minus=0	max_min_right_plus=61	max_pos_hash_score=298	max_right=114	max_right_minus=0	max_right_plus=114	neg_log10_pos_hash_p_value=26.2	new_junction_coverage=0.01	new_junction_read_count=5	polymorphism_frequency=9.930e-03	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.02	side_1_overlap=0	side_1_possible_overlap_registers=149	side_1_read_count=483	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.08	side_2_overlap=0	side_2_possible_overlap_registers=149	side_2_read_count=514	side_2_redundant=0	total_non_overlap_reads=5
JC	103	.	CP028101	604698	1	CP028101	604723	1	0	alignment_overlap=7	coverage_minus=5	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=7.430e-03	junction_possible_overlap_registers=142	key=CP028101__604698__1__CP028101__604716__1__7____150__150__0__0	max_left=129	max_left_minus=129	max_left_plus=0	max_min_left=22	max_min_left_minus=22	max_min_left_plus=0	max_min_right=39	max_min_right_minus=39	max_min_right_plus=0	max_pos_hash_score=284	max_right=121	max_right_minus=121	max_right_plus=0	neg_log10_pos_hash_p_value=25.7	new_junction_coverage=0.01	new_junction_read_count=5	polymorphism_frequency=7.430e-03	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.48	side_1_overlap=7	side_1_possible_overlap_registers=149	side_1_read_count=704	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.47	side_2_overlap=0	side_2_possible_overlap_registers=142	side_2_read_count=665	side_2_redundant=0	total_non_overlap_reads=5
JC	104	.	CP028101	606445	-1	CP028101	606466	-1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=6	flanking_left=150	flanking_right=150	frequency=9.995e-03	junction_possible_overlap_registers=146	key=CP028101__606445__-1__CP028101__606469__-1__3____150__150__0__0	max_left=119	max_left_minus=0	max_left_plus=119	max_min_left=51	max_min_left_minus=0	max_min_left_plus=51	max_min_right=61	max_min_right_minus=0	max_min_right_plus=61	max_pos_hash_score=292	max_right=96	max_right_minus=0	max_right_plus=96	neg_log10_pos_hash_p_value=25.2	new_junction_coverage=0.01	new_junction_read_count=6	polymorphism_frequency=9.995e-03	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.30	side_1_overlap=3	side_1_possible_overlap_registers=149	side_1_read_count=617	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.25	side_2_overlap=0	side_2_possible_overlap_registers=146	side_2_read_count=584	side_2_redundant=0	total_non_overlap_reads=6
JC	105	.	CP028101	632896	1	CP028101	632929	1	0	alignment_overlap=4	coverage_minus=4	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=1.267e-02	junction_possible_overlap_registers=145	key=CP028101__632896__1__CP028101__632925__1__4____150__150__0__0	max_left=73	max_left_minus=73	max_left_plus=2	max_min_left=61	max_min_left_minus=61	max_min_left_plus=2	max_min_right=73	max_min_right_minus=73	max_min_right_plus=0	max_pos_hash_score=290	max_right=144	max_right_minus=85	max_right_plus=144	neg_log10_pos_hash_p_value=26.8	new_junction_coverage=0.01	new_junction_read_count=6	polymorphism_frequency=1.267e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.00	side_1_overlap=4	side_1_possible_overlap_registers=149	side_1_read_count=474	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.03	side_2_overlap=0	side_2_possible_overlap_registers=145	side_2_read_count=474	side_2_redundant=0	total_non_overlap_reads=5
JC	106	.	CP028101	666693	-1	CP028101	666694	-1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=4	flanking_left=150	flanking_right=150	frequency=1.239e-02	junction_possible_overlap_registers=137	key=CP028101__666693__-1__CP028101__666706__-1__12____150__150__0__0	max_left=131	max_left_minus=131	max_left_plus=119	max_min_left=68	max_min_left_minus=0	max_min_left_plus=68	max_min_right=19	max_min_right_minus=7	max_min_right_plus=19	max_pos_hash_score=274	max_right=98	max_right_minus=7	max_right_plus=98	neg_log10_pos_hash_p_value=25.3	new_junction_coverage=0.01	new_junction_read_count=6	polymorphism_frequency=1.239e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.13	side_1_overlap=12	side_1_possible_overlap_registers=149	side_1_read_count=537	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.06	side_2_overlap=0	side_2_possible_overlap_registers=137	side_2_read_count=463	side_2_redundant=0	total_non_overlap_reads=6
JC	107	.	CP028101	672936	1	CP028101	672976	1	0	alignment_overlap=8	coverage_minus=7	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=1.536e-02	junction_possible_overlap_registers=141	key=CP028101__672936__1__CP028101__672968__1__8____150__150__0__0	max_left=48	max_left_minus=48	max_left_plus=0	max_min_left=48	max_min_left_minus=48	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=282	max_right=107	max_right_minus=107	max_right_plus=0	neg_log10_pos_hash_p_value=25.6	new_junction_coverage=0.02	new_junction_read_count=7	polymorphism_frequency=1.536e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.99	side_1_overlap=8	side_1_possible_overlap_registers=149	side_1_read_count=471	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.01	side_2_overlap=0	side_2_possible_overlap_registers=141	side_2_read_count=452	side_2_redundant=0	total_non_overlap_reads=7
JC	108	.	CP028101	676935	1	CP028101	676955	1	0	alignment_overlap=7	coverage_minus=4	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=7.951e-03	junction_possible_overlap_registers=142	key=CP028101__676935__1__CP028101__676948__1__7____150__150__0__0	max_left=62	max_left_minus=62	max_left_plus=0	max_min_left=62	max_min_left_minus=62	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=284	max_right=125	max_right_minus=125	max_right_plus=0	neg_log10_pos_hash_p_value=26.6	new_junction_coverage=0.01	new_junction_read_count=4	polymorphism_frequency=7.951e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.11	side_1_overlap=7	side_1_possible_overlap_registers=149	side_1_read_count=528	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.09	side_2_overlap=0	side_2_possible_overlap_registers=142	side_2_read_count=495	side_2_redundant=0	total_non_overlap_reads=4
JC	109	.	CP028101	677260	1	CP028101	677288	1	0	alignment_overlap=28	coverage_minus=5	coverage_plus=5	flanking_left=150	flanking_right=150	frequency=2.848e-02	junction_possible_overlap_registers=121	key=CP028101__677260__1__CP028101__677260__1__28____150__150__0__0	max_left=113	max_left_minus=89	max_left_plus=113	max_min_left=60	max_min_left_minus=39	max_min_left_plus=60	max_min_right=33	max_min_right_minus=33	max_min_right_plus=20	max_pos_hash_score=242	max_right=102	max_right_minus=102	max_right_plus=72	neg_log10_pos_hash_p_value=21.8	new_junction_coverage=0.03	new_junction_read_count=10	polymorphism_frequency=2.848e-02	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.88	side_1_overlap=28	side_1_possible_overlap_registers=149	side_1_read_count=419	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.89	side_2_overlap=0	side_2_possible_overlap_registers=121	side_2_read_count=342	side_2_redundant=0	total_non_overlap_reads=10
JC	110	.	CP028101	694865	1	CP028101	694907	1	0	alignment_overlap=1	coverage_minus=4	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=1.091e-02	junction_possible_overlap_registers=148	key=CP028101__694865__1__CP028101__694906__1__1____150__150__0__0	max_left=67	max_left_minus=67	max_left_plus=0	max_min_left=67	max_min_left_minus=67	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=296	max_right=114	max_right_minus=114	max_right_plus=0	neg_log10_pos_hash_p_value=27.0	new_junction_coverage=0.01	new_junction_read_count=4	polymorphism_frequency=1.091e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.61	side_1_overlap=1	side_1_possible_overlap_registers=149	side_1_read_count=292	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=435	side_2_redundant=0	total_non_overlap_reads=4
JC	111	.	CP028101	696826	1	CP028101	696848	1	0	alignment_overlap=9	coverage_minus=5	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=NA	junction_possible_overlap_registers=140	key=CP028101__696826__1__CP028101__696839__1__9____150__150__1__1	max_left=94	max_left_minus=94	max_left_plus=7	max_min_left=45	max_min_left_minus=45	max_min_left_plus=7	max_min_right=52	max_min_right_minus=52	max_min_right_plus=0	max_pos_hash_score=280	max_right=134	max_right_minus=122	max_right_plus=134	neg_log10_pos_hash_p_value=24.8	new_junction_coverage=0.02	new_junction_read_count=7	polymorphism_frequency=NA	pos_hash_score=5	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=9	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=7
JC	112	.	CP028101	696834	-1	CP028101	696838	-1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=10	flanking_left=150	flanking_right=150	frequency=NA	junction_possible_overlap_registers=140	key=CP028101__696834__-1__CP028101__696847__-1__9____150__150__1__1	max_left=128	max_left_minus=128	max_left_plus=127	max_min_left=59	max_min_left_minus=0	max_min_left_plus=59	max_min_right=31	max_min_right_minus=31	max_min_right_plus=19	max_pos_hash_score=280	max_right=87	max_right_minus=31	max_right_plus=87	neg_log10_pos_hash_p_value=23.4	new_junction_coverage=0.03	new_junction_read_count=12	polymorphism_frequency=NA	pos_hash_score=7	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=9	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=12
JC	113	.	CP028101	713027	1	CP028101	713053	1	0	alignment_overlap=5	coverage_minus=2	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=5.792e-03	junction_possible_overlap_registers=144	key=CP028101__713027__1__CP028101__713048__1__5____150__150__0__0	max_left=141	max_left_minus=141	max_left_plus=39	max_min_left=50	max_min_left_minus=50	max_min_left_plus=39	max_min_right=1	max_min_right_minus=1	max_min_right_plus=0	max_pos_hash_score=288	max_right=106	max_right_minus=95	max_right_plus=106	neg_log10_pos_hash_p_value=26.7	new_junction_coverage=0.01	new_junction_read_count=3	polymorphism_frequency=5.792e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.13	side_1_overlap=5	side_1_possible_overlap_registers=149	side_1_read_count=538	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.11	side_2_overlap=0	side_2_possible_overlap_registers=144	side_2_read_count=510	side_2_redundant=0	total_non_overlap_reads=3
JC	114	.	CP028101	718084	1	CP028101	718110	1	0	alignment_overlap=11	coverage_minus=4	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=9.647e-03	junction_possible_overlap_registers=138	key=CP028101__718084__1__CP028101__718099__1__11____150__150__0__0	max_left=134	max_left_minus=134	max_left_plus=0	max_min_left=45	max_min_left_minus=45	max_min_left_plus=0	max_min_right=5	max_min_right_minus=5	max_min_right_plus=0	max_pos_hash_score=276	max_right=124	max_right_minus=124	max_right_plus=0	neg_log10_pos_hash_p_value=25.4	new_junction_coverage=0.01	new_junction_read_count=4	polymorphism_frequency=9.647e-03	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.96	side_1_overlap=11	side_1_possible_overlap_registers=149	side_1_read_count=457	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.90	side_2_overlap=0	side_2_possible_overlap_registers=138	side_2_read_count=398	side_2_redundant=0	total_non_overlap_reads=4
JC	115	.	CP028101	733755	-1	CP028101	733811	-1	0	alignment_overlap=5	coverage_minus=2	coverage_plus=3	flanking_left=150	flanking_right=150	frequency=1.004e-02	junction_possible_overlap_registers=144	key=CP028101__733755__-1__CP028101__733816__-1__5____150__150__0__0	max_left=144	max_left_minus=89	max_left_plus=144	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=65	max_min_right_minus=56	max_min_right_plus=65	max_pos_hash_score=288	max_right=65	max_right_minus=56	max_right_plus=65	neg_log10_pos_hash_p_value=26.7	new_junction_coverage=0.01	new_junction_read_count=5	polymorphism_frequency=1.004e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.04	side_1_overlap=5	side_1_possible_overlap_registers=149	side_1_read_count=496	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.10	side_2_overlap=0	side_2_possible_overlap_registers=144	side_2_read_count=507	side_2_redundant=0	total_non_overlap_reads=5
JC	116	.	CP028101	770333	1	CP028101	1450026	1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=1.108e-02	junction_possible_overlap_registers=140	key=CP028101__770333__1__CP028101__1450017__1__9____150__150__0__1	max_left=72	max_left_minus=72	max_left_plus=33	max_min_left=39	max_min_left_minus=39	max_min_left_plus=33	max_min_right=69	max_min_right_minus=69	max_min_right_plus=0	max_pos_hash_score=280	max_right=102	max_right_minus=102	max_right_plus=102	neg_log10_pos_hash_p_value=26.4	new_junction_coverage=0.01	new_junction_read_count=4	polymorphism_frequency=1.108e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.80	side_1_overlap=9	side_1_possible_overlap_registers=149	side_1_read_count=380	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	117	.	CP028101	780311	-1	CP028101	780319	-1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=4	flanking_left=150	flanking_right=150	frequency=1.010e-02	junction_possible_overlap_registers=139	key=CP028101__780311__-1__CP028101__780329__-1__10____150__150__0__0	max_left=108	max_left_minus=54	max_left_plus=108	max_min_left=62	max_min_left_minus=54	max_min_left_plus=62	max_min_right=40	max_min_right_minus=0	max_min_right_plus=40	max_pos_hash_score=278	max_right=96	max_right_minus=86	max_right_plus=96	neg_log10_pos_hash_p_value=24.7	new_junction_coverage=0.01	new_junction_read_count=5	polymorphism_frequency=1.010e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.11	side_1_overlap=10	side_1_possible_overlap_registers=149	side_1_read_count=528	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.10	side_2_overlap=0	side_2_possible_overlap_registers=139	side_2_read_count=488	side_2_redundant=0	total_non_overlap_reads=5
JC	118	.	CP028101	788700	-1	CP028101	788715	-1	0	alignment_overlap=5	coverage_minus=0	coverage_plus=4	flanking_left=150	flanking_right=150	frequency=1.004e-02	junction_possible_overlap_registers=144	key=CP028101__788700__-1__CP028101__788720__-1__5____150__150__0__0	max_left=116	max_left_minus=0	max_left_plus=116	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=67	max_min_right_minus=0	max_min_right_plus=67	max_pos_hash_score=288	max_right=67	max_right_minus=0	max_right_plus=67	neg_log10_pos_hash_p_value=26.7	new_junction_coverage=0.01	new_junction_read_count=4	polymorphism_frequency=1.004e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.86	side_1_overlap=5	side_1_possible_overlap_registers=149	side_1_read_count=411	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.85	side_2_overlap=0	side_2_possible_overlap_registers=144	side_2_read_count=392	side_2_redundant=0	total_non_overlap_reads=4
JC	119	.	CP028101	788832	1	CP028101	788856	1	0	alignment_overlap=10	coverage_minus=11	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=3.776e-02	junction_possible_overlap_registers=139	key=CP028101__788832__1__CP028101__788846__1__10____150__150__0__0	max_left=111	max_left_minus=111	max_left_plus=11	max_min_left=66	max_min_left_minus=66	max_min_left_plus=11	max_min_right=61	max_min_right_minus=61	max_min_right_plus=0	max_pos_hash_score=278	max_right=129	max_right_minus=125	max_right_plus=129	neg_log10_pos_hash_p_value=22.1	new_junction_coverage=0.03	new_junction_read_count=14	polymorphism_frequency=3.776e-02	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.80	side_1_overlap=10	side_1_possible_overlap_registers=149	side_1_read_count=381	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=139	side_2_read_count=358	side_2_redundant=0	total_non_overlap_reads=13
JC	120	.	CP028101	788841	-1	CP028101	788845	-1	0	alignment_overlap=10	coverage_minus=0	coverage_plus=3	flanking_left=150	flanking_right=150	frequency=8.308e-03	junction_possible_overlap_registers=139	key=CP028101__788841__-1__CP028101__788855__-1__10____150__150__0__0	max_left=79	max_left_minus=0	max_left_plus=79	max_min_left=41	max_min_left_minus=0	max_min_left_plus=41	max_min_right=63	max_min_right_minus=0	max_min_right_plus=63	max_pos_hash_score=278	max_right=97	max_right_minus=0	max_right_plus=97	neg_log10_pos_hash_p_value=26.4	new_junction_coverage=0.01	new_junction_read_count=3	polymorphism_frequency=8.308e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=10	side_1_possible_overlap_registers=149	side_1_read_count=384	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=139	side_2_read_count=358	side_2_redundant=0	total_non_overlap_reads=3
JC	121	.	CP028101	794075	1	CP028101	794092	1	0	alignment_overlap=7	coverage_minus=5	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=1.036e-02	junction_possible_overlap_registers=142	key=CP028101__794075__1__CP028101__794085__1__7____150__150__0__0	max_left=105	max_left_minus=105	max_left_plus=0	max_min_left=55	max_min_left_minus=55	max_min_left_plus=0	max_min_right=40	max_min_right_minus=40	max_min_right_plus=0	max_pos_hash_score=284	max_right=88	max_right_minus=88	max_right_plus=0	neg_log10_pos_hash_p_value=26.6	new_junction_coverage=0.01	new_junction_read_count=5	polymorphism_frequency=1.036e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.09	side_1_overlap=7	side_1_possible_overlap_registers=149	side_1_read_count=518	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.02	side_2_overlap=0	side_2_possible_overlap_registers=142	side_2_read_count=462	side_2_redundant=0	total_non_overlap_reads=5
JC	122	.	CP028101	795844	1	CP028101	795863	1	0	alignment_overlap=7	coverage_minus=5	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=1.302e-02	junction_possible_overlap_registers=142	key=CP028101__795844__1__CP028101__795856__1__7____150__150__0__0	max_left=79	max_left_minus=79	max_left_plus=38	max_min_left=46	max_min_left_minus=46	max_min_left_plus=38	max_min_right=64	max_min_right_minus=64	max_min_right_plus=0	max_pos_hash_score=284	max_right=108	max_right_minus=108	max_right_plus=105	neg_log10_pos_hash_p_value=25.7	new_junction_coverage=0.01	new_junction_read_count=6	polymorphism_frequency=1.302e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.00	side_1_overlap=7	side_1_possible_overlap_registers=149	side_1_read_count=475	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.01	side_2_overlap=0	side_2_possible_overlap_registers=142	side_2_read_count=457	side_2_redundant=0	total_non_overlap_reads=6
JC	123	.	CP028101	796884	-1	CP028101	796886	-1	0	alignment_overlap=10	coverage_minus=0	coverage_plus=8	flanking_left=150	flanking_right=150	frequency=2.266e-02	junction_possible_overlap_registers=139	key=CP028101__796884__-1__CP028101__796896__-1__10____150__150__0__0	max_left=108	max_left_minus=0	max_left_plus=108	max_min_left=55	max_min_left_minus=0	max_min_left_plus=55	max_min_right=61	max_min_right_minus=0	max_min_right_plus=61	max_pos_hash_score=278	max_right=86	max_right_minus=0	max_right_plus=86	neg_log10_pos_hash_p_value=24.0	new_junction_coverage=0.02	new_junction_read_count=8	polymorphism_frequency=2.266e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=10	side_1_possible_overlap_registers=149	side_1_read_count=372	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.77	side_2_overlap=0	side_2_possible_overlap_registers=139	side_2_read_count=343	side_2_redundant=0	total_non_overlap_reads=8
JC	124	.	CP028101	833480	1	CP028101	833502	1	0	alignment_overlap=4	coverage_minus=4	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=8.775e-03	junction_possible_overlap_registers=145	key=CP028101__833480__1__CP028101__833498__1__4____150__150__0__0	max_left=78	max_left_minus=78	max_left_plus=0	max_min_left=43	max_min_left_minus=43	max_min_left_plus=0	max_min_right=68	max_min_right_minus=68	max_min_right_plus=0	max_pos_hash_score=290	max_right=143	max_right_minus=143	max_right_plus=0	neg_log10_pos_hash_p_value=26.8	new_junction_coverage=0.01	new_junction_read_count=4	polymorphism_frequency=8.775e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.96	side_1_overlap=4	side_1_possible_overlap_registers=149	side_1_read_count=457	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.99	side_2_overlap=0	side_2_possible_overlap_registers=145	side_2_read_count=459	side_2_redundant=0	total_non_overlap_reads=4
JC	125	.	CP028101	835468	-1	CP028101	835471	-1	0	alignment_overlap=9	coverage_minus=0	coverage_plus=4	flanking_left=150	flanking_right=150	frequency=7.247e-03	junction_possible_overlap_registers=140	key=CP028101__835468__-1__CP028101__835480__-1__9____150__150__0__0	max_left=110	max_left_minus=0	max_left_plus=110	max_min_left=55	max_min_left_minus=0	max_min_left_plus=55	max_min_right=60	max_min_right_minus=0	max_min_right_plus=60	max_pos_hash_score=280	max_right=86	max_right_minus=0	max_right_plus=86	neg_log10_pos_hash_p_value=25.6	new_junction_coverage=0.01	new_junction_read_count=4	polymorphism_frequency=7.247e-03	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.22	side_1_overlap=9	side_1_possible_overlap_registers=149	side_1_read_count=580	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.23	side_2_overlap=0	side_2_possible_overlap_registers=140	side_2_read_count=551	side_2_redundant=0	total_non_overlap_reads=4
JC	126	.	CP028101	839631	-1	CP028101	839638	-1	0	alignment_overlap=10	coverage_minus=0	coverage_plus=10	flanking_left=150	flanking_right=150	frequency=2.109e-02	junction_possible_overlap_registers=139	key=CP028101__839631__-1__CP028101__839648__-1__10____150__150__0__0	max_left=116	max_left_minus=0	max_left_plus=116	max_min_left=65	max_min_left_minus=0	max_min_left_plus=65	max_min_right=53	max_min_right_minus=0	max_min_right_plus=53	max_pos_hash_score=278	max_right=81	max_right_minus=0	max_right_plus=81	neg_log10_pos_hash_p_value=25.5	new_junction_coverage=0.02	new_junction_read_count=10	polymorphism_frequency=2.109e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.09	side_1_overlap=10	side_1_possible_overlap_registers=149	side_1_read_count=517	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.01	side_2_overlap=0	side_2_possible_overlap_registers=139	side_2_read_count=446	side_2_redundant=0	total_non_overlap_reads=10
JC	127	.	CP028101	855814	1	CP028101	855830	1	0	alignment_overlap=7	coverage_minus=3	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=7.692e-03	junction_possible_overlap_registers=142	key=CP028101__855814__1__CP028101__855823__1__7____150__150__0__0	max_left=66	max_left_minus=66	max_left_plus=26	max_min_left=66	max_min_left_minus=66	max_min_left_plus=26	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=284	max_right=132	max_right_minus=132	max_right_plus=117	neg_log10_pos_hash_p_value=25.7	new_junction_coverage=0.01	new_junction_read_count=4	polymorphism_frequency=7.692e-03	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.16	side_1_overlap=7	side_1_possible_overlap_registers=149	side_1_read_count=552	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.12	side_2_overlap=0	side_2_possible_overlap_registers=142	side_2_read_count=506	side_2_redundant=0	total_non_overlap_reads=4
JC	128	.	CP028101	859708	1	CP028101	859754	1	0	alignment_overlap=11	coverage_minus=9	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=2.392e-02	junction_possible_overlap_registers=138	key=CP028101__859708__1__CP028101__859743__1__11____150__150__0__0	max_left=86	max_left_minus=86	max_left_plus=0	max_min_left=39	max_min_left_minus=39	max_min_left_plus=0	max_min_right=66	max_min_right_minus=66	max_min_right_plus=0	max_pos_hash_score=276	max_right=116	max_right_minus=116	max_right_plus=0	neg_log10_pos_hash_p_value=24.6	new_junction_coverage=0.02	new_junction_read_count=10	polymorphism_frequency=2.392e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.91	side_1_overlap=11	side_1_possible_overlap_registers=149	side_1_read_count=434	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=138	side_2_read_count=414	side_2_redundant=0	total_non_overlap_reads=9
JC	129	.	CP028101	863454	1	CP028101	863476	1	0	alignment_overlap=22	coverage_minus=2	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=9.468e-03	junction_possible_overlap_registers=127	key=CP028101__863454__1__CP028101__863454__1__22____150__150__0__0	max_left=83	max_left_minus=83	max_left_plus=69	max_min_left=59	max_min_left_minus=59	max_min_left_plus=30	max_min_right=59	max_min_right_minus=45	max_min_right_plus=59	max_pos_hash_score=254	max_right=98	max_right_minus=69	max_right_plus=98	neg_log10_pos_hash_p_value=24.5	new_junction_coverage=0.01	new_junction_read_count=4	polymorphism_frequency=9.468e-03	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.04	side_1_overlap=22	side_1_possible_overlap_registers=149	side_1_read_count=495	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.02	side_2_overlap=0	side_2_possible_overlap_registers=127	side_2_read_count=415	side_2_redundant=0	total_non_overlap_reads=4
JC	130	.	CP028101	900717	-1	CP028101	900717	1	-10	alignment_overlap=-10	coverage_minus=222	coverage_plus=186	flanking_left=150	flanking_right=150	frequency=NA	junction_possible_overlap_registers=139	key=CP028101__900717__-1__CP028101__900717__1__-10__CCACTTTATC__150__150__1__1	max_left=139	max_left_minus=139	max_left_plus=139	max_min_left=68	max_min_left_minus=68	max_min_left_plus=66	max_min_right=69	max_min_right_minus=69	max_min_right_plus=68	max_pos_hash_score=278	max_right=139	max_right_minus=139	max_right_plus=138	neg_log10_pos_hash_p_value=0.8	new_junction_coverage=0.95	new_junction_read_count=423	polymorphism_frequency=NA	pos_hash_score=144	prediction=unknown	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=408	unique_read_sequence=CCACTTTATC
JC	131	.	CP028101	929075	-1	CP028101	929078	-1	0	alignment_overlap=22	coverage_minus=0	coverage_plus=3	flanking_left=150	flanking_right=150	frequency=7.055e-03	junction_possible_overlap_registers=127	key=CP028101__929075__-1__CP028101__929100__-1__22____150__150__0__0	max_left=115	max_left_minus=0	max_left_plus=115	max_min_left=60	max_min_left_minus=0	max_min_left_plus=60	max_min_right=61	max_min_right_minus=0	max_min_right_plus=61	max_pos_hash_score=254	max_right=68	max_right_minus=0	max_right_plus=68	neg_log10_pos_hash_p_value=25.4	new_junction_coverage=0.01	new_junction_read_count=3	polymorphism_frequency=7.055e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.05	side_1_overlap=22	side_1_possible_overlap_registers=149	side_1_read_count=498	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.04	side_2_overlap=0	side_2_possible_overlap_registers=127	side_2_read_count=420	side_2_redundant=0	total_non_overlap_reads=3
JC	132	.	CP028101	946574	1	CP028101	946596	1	0	alignment_overlap=5	coverage_minus=5	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=1.397e-02	junction_possible_overlap_registers=144	key=CP028101__946574__1__CP028101__946591__1__5____150__150__0__0	max_left=101	max_left_minus=101	max_left_plus=65	max_min_left=65	max_min_left_minus=57	max_min_left_plus=65	max_min_right=44	max_min_right_minus=44	max_min_right_plus=0	max_pos_hash_score=288	max_right=88	max_right_minus=88	max_right_plus=80	neg_log10_pos_hash_p_value=26.7	new_junction_coverage=0.01	new_junction_read_count=6	polymorphism_frequency=1.397e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.95	side_1_overlap=5	side_1_possible_overlap_registers=149	side_1_read_count=450	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.90	side_2_overlap=0	side_2_possible_overlap_registers=144	side_2_read_count=412	side_2_redundant=0	total_non_overlap_reads=6
JC	133	.	CP028101	947679	-1	CP028101	947684	-1	0	alignment_overlap=7	coverage_minus=0	coverage_plus=4	flanking_left=150	flanking_right=150	frequency=8.019e-03	junction_possible_overlap_registers=142	key=CP028101__947679__-1__CP028101__947691__-1__7____150__150__0__0	max_left=127	max_left_minus=0	max_left_plus=127	max_min_left=65	max_min_left_minus=0	max_min_left_plus=65	max_min_right=16	max_min_right_minus=0	max_min_right_plus=16	max_pos_hash_score=284	max_right=80	max_right_minus=0	max_right_plus=80	neg_log10_pos_hash_p_value=26.6	new_junction_coverage=0.01	new_junction_read_count=4	polymorphism_frequency=8.019e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.09	side_1_overlap=7	side_1_possible_overlap_registers=149	side_1_read_count=518	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.10	side_2_overlap=0	side_2_possible_overlap_registers=142	side_2_read_count=496	side_2_redundant=0	total_non_overlap_reads=4
JC	134	.	CP028101	948401	1	CP028101	948545	1	0	alignment_overlap=1	coverage_minus=0	coverage_plus=3	flanking_left=150	flanking_right=150	frequency=5.810e-03	junction_possible_overlap_registers=148	key=CP028101__948401__1__CP028101__948544__1__1____150__150__0__0	max_left=116	max_left_minus=0	max_left_plus=116	max_min_left=7	max_min_left_minus=0	max_min_left_plus=7	max_min_right=60	max_min_right_minus=0	max_min_right_plus=60	max_pos_hash_score=296	max_right=140	max_right_minus=0	max_right_plus=140	neg_log10_pos_hash_p_value=27.0	new_junction_coverage=0.01	new_junction_read_count=3	polymorphism_frequency=5.810e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.01	side_1_overlap=1	side_1_possible_overlap_registers=149	side_1_read_count=482	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.16	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=548	side_2_redundant=0	total_non_overlap_reads=3
JC	135	.	CP028101	960884	1	CP028101	960964	1	0	alignment_overlap=9	coverage_minus=1	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=6.917e-03	junction_possible_overlap_registers=140	key=CP028101__960884__1__CP028101__960955__1__9____150__150__0__0	max_left=118	max_left_minus=75	max_left_plus=118	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=66	max_min_right_minus=66	max_min_right_plus=47	max_pos_hash_score=280	max_right=66	max_right_minus=66	max_right_plus=47	neg_log10_pos_hash_p_value=26.4	new_junction_coverage=0.01	new_junction_read_count=3	polymorphism_frequency=6.917e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.93	side_1_overlap=9	side_1_possible_overlap_registers=149	side_1_read_count=440	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.00	side_2_overlap=0	side_2_possible_overlap_registers=140	side_2_read_count=448	side_2_redundant=0	total_non_overlap_reads=3
JC	136	.	CP028101	981715	1	CP028101	981737	1	0	alignment_overlap=9	coverage_minus=3	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=6.758e-03	junction_possible_overlap_registers=140	key=CP028101__981715__1__CP028101__981728__1__9____150__150__0__0	max_left=87	max_left_minus=87	max_left_plus=0	max_min_left=50	max_min_left_minus=50	max_min_left_plus=0	max_min_right=61	max_min_right_minus=61	max_min_right_plus=0	max_pos_hash_score=280	max_right=91	max_right_minus=91	max_right_plus=0	neg_log10_pos_hash_p_value=26.4	new_junction_coverage=0.01	new_junction_read_count=3	polymorphism_frequency=6.758e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.01	side_1_overlap=9	side_1_possible_overlap_registers=149	side_1_read_count=482	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.96	side_2_overlap=0	side_2_possible_overlap_registers=140	side_2_read_count=429	side_2_redundant=0	total_non_overlap_reads=3
JC	137	.	CP028101	988377	1	CP028101	988401	1	0	alignment_overlap=10	coverage_minus=5	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=1.096e-02	junction_possible_overlap_registers=139	key=CP028101__988377__1__CP028101__988391__1__10____150__150__0__0	max_left=116	max_left_minus=116	max_left_plus=0	max_min_left=66	max_min_left_minus=66	max_min_left_plus=0	max_min_right=23	max_min_right_minus=23	max_min_right_plus=0	max_pos_hash_score=278	max_right=125	max_right_minus=125	max_right_plus=0	neg_log10_pos_hash_p_value=25.5	new_junction_coverage=0.01	new_junction_read_count=5	polymorphism_frequency=1.096e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.02	side_1_overlap=10	side_1_possible_overlap_registers=149	side_1_read_count=486	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.01	side_2_overlap=0	side_2_possible_overlap_registers=139	side_2_read_count=449	side_2_redundant=0	total_non_overlap_reads=5
JC	138	.	CP028101	1003655	1	CP028101	1003676	1	0	alignment_overlap=9	coverage_minus=6	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=1.828e-02	junction_possible_overlap_registers=140	key=CP028101__1003655__1__CP028101__1003667__1__9____150__150__0__0	max_left=131	max_left_minus=131	max_left_plus=0	max_min_left=60	max_min_left_minus=60	max_min_left_plus=0	max_min_right=65	max_min_right_minus=65	max_min_right_plus=0	max_pos_hash_score=280	max_right=128	max_right_minus=128	max_right_plus=0	neg_log10_pos_hash_p_value=24.0	new_junction_coverage=0.01	new_junction_read_count=6	polymorphism_frequency=1.828e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.72	side_1_overlap=9	side_1_possible_overlap_registers=149	side_1_read_count=342	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.72	side_2_overlap=0	side_2_possible_overlap_registers=140	side_2_read_count=323	side_2_redundant=0	total_non_overlap_reads=6
JC	139	.	CP028101	1004515	1	CP028101	1004537	1	0	alignment_overlap=9	coverage_minus=6	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=1.325e-02	junction_possible_overlap_registers=140	key=CP028101__1004515__1__CP028101__1004528__1__9____150__150__0__0	max_left=76	max_left_minus=76	max_left_plus=0	max_min_left=61	max_min_left_minus=61	max_min_left_plus=0	max_min_right=65	max_min_right_minus=65	max_min_right_plus=0	max_pos_hash_score=280	max_right=129	max_right_minus=129	max_right_plus=0	neg_log10_pos_hash_p_value=24.8	new_junction_coverage=0.01	new_junction_read_count=6	polymorphism_frequency=1.325e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.02	side_1_overlap=9	side_1_possible_overlap_registers=149	side_1_read_count=483	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.99	side_2_overlap=0	side_2_possible_overlap_registers=140	side_2_read_count=440	side_2_redundant=0	total_non_overlap_reads=6
JC	140	.	CP028101	1011839	-1	CP028101	1011887	-1	0	alignment_overlap=3	coverage_minus=1	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=6.139e-03	junction_possible_overlap_registers=146	key=CP028101__1011839__-1__CP028101__1011890__-1__3____150__150__0__0	max_left=88	max_left_minus=88	max_left_plus=70	max_min_left=70	max_min_left_minus=0	max_min_left_plus=70	max_min_right=59	max_min_right_minus=59	max_min_right_plus=0	max_pos_hash_score=292	max_right=138	max_right_minus=59	max_right_plus=138	neg_log10_pos_hash_p_value=26.9	new_junction_coverage=0.01	new_junction_read_count=3	polymorphism_frequency=6.139e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.01	side_1_overlap=3	side_1_possible_overlap_registers=149	side_1_read_count=479	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.08	side_2_overlap=0	side_2_possible_overlap_registers=146	side_2_read_count=502	side_2_redundant=0	total_non_overlap_reads=3
JC	141	.	CP028101	1023291	-1	CP028101	1023347	-1	0	alignment_overlap=7	coverage_minus=1	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=7.261e-03	junction_possible_overlap_registers=142	key=CP028101__1023291__-1__CP028101__1023354__-1__7____150__150__0__0	max_left=84	max_left_minus=41	max_left_plus=84	max_min_left=71	max_min_left_minus=41	max_min_left_plus=71	max_min_right=65	max_min_right_minus=0	max_min_right_plus=65	max_pos_hash_score=284	max_right=102	max_right_minus=102	max_right_plus=72	neg_log10_pos_hash_p_value=26.6	new_junction_coverage=0.01	new_junction_read_count=3	polymorphism_frequency=7.261e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.93	side_1_overlap=7	side_1_possible_overlap_registers=149	side_1_read_count=441	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.88	side_2_overlap=0	side_2_possible_overlap_registers=142	side_2_read_count=400	side_2_redundant=0	total_non_overlap_reads=3
JC	142	.	CP028101	1049567	1	CP028101	1049592	1	0	alignment_overlap=3	coverage_minus=3	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=9.206e-03	junction_possible_overlap_registers=146	key=CP028101__1049567__1__CP028101__1049589__1__3____150__150__0__0	max_left=117	max_left_minus=109	max_left_plus=117	max_min_left=39	max_min_left_minus=39	max_min_left_plus=0	max_min_right=38	max_min_right_minus=38	max_min_right_plus=30	max_pos_hash_score=292	max_right=108	max_right_minus=108	max_right_plus=30	neg_log10_pos_hash_p_value=26.9	new_junction_coverage=0.01	new_junction_read_count=4	polymorphism_frequency=9.206e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=3	side_1_possible_overlap_registers=149	side_1_read_count=447	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.91	side_2_overlap=0	side_2_possible_overlap_registers=146	side_2_read_count=423	side_2_redundant=0	total_non_overlap_reads=4
JC	143	.	CP028101	1084508	1	CP028101	1084529	1	0	alignment_overlap=8	coverage_minus=3	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=7.316e-03	junction_possible_overlap_registers=141	key=CP028101__1084508__1__CP028101__1084521__1__8____150__150__0__0	max_left=98	max_left_minus=98	max_left_plus=0	max_min_left=40	max_min_left_minus=40	max_min_left_plus=0	max_min_right=57	max_min_right_minus=57	max_min_right_plus=0	max_pos_hash_score=282	max_right=104	max_right_minus=104	max_right_plus=0	neg_log10_pos_hash_p_value=26.5	new_junction_coverage=0.01	new_junction_read_count=3	polymorphism_frequency=7.316e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.90	side_1_overlap=8	side_1_possible_overlap_registers=149	side_1_read_count=426	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.91	side_2_overlap=0	side_2_possible_overlap_registers=141	side_2_read_count=411	side_2_redundant=0	total_non_overlap_reads=3
JC	144	.	CP028101	1089685	1	CP028101	1089713	1	0	alignment_overlap=11	coverage_minus=5	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=1.009e-02	junction_possible_overlap_registers=138	key=CP028101__1089685__1__CP028101__1089702__1__11____150__150__0__0	max_left=80	max_left_minus=80	max_left_plus=0	max_min_left=45	max_min_left_minus=45	max_min_left_plus=0	max_min_right=59	max_min_right_minus=59	max_min_right_plus=0	max_pos_hash_score=276	max_right=116	max_right_minus=116	max_right_plus=0	neg_log10_pos_hash_p_value=26.3	new_junction_coverage=0.01	new_junction_read_count=5	polymorphism_frequency=1.009e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.10	side_1_overlap=11	side_1_possible_overlap_registers=149	side_1_read_count=525	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.12	side_2_overlap=0	side_2_possible_overlap_registers=138	side_2_read_count=495	side_2_redundant=0	total_non_overlap_reads=5
JC	145	.	CP028101	1133411	1	CP028101	1133444	1	0	alignment_overlap=16	coverage_minus=11	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=2.902e-02	junction_possible_overlap_registers=133	key=CP028101__1133411__1__CP028101__1133428__1__16____150__150__0__0	max_left=124	max_left_minus=124	max_left_plus=0	max_min_left=26	max_min_left_minus=26	max_min_left_plus=0	max_min_right=65	max_min_right_minus=65	max_min_right_plus=0	max_pos_hash_score=266	max_right=120	max_right_minus=120	max_right_plus=0	neg_log10_pos_hash_p_value=21.0	new_junction_coverage=0.03	new_junction_read_count=11	polymorphism_frequency=2.902e-02	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.86	side_1_overlap=16	side_1_possible_overlap_registers=149	side_1_read_count=409	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.87	side_2_overlap=0	side_2_possible_overlap_registers=133	side_2_read_count=371	side_2_redundant=0	total_non_overlap_reads=11
JC	146	.	CP028101	1137798	1	CP028101	1137840	1	0	alignment_overlap=9	coverage_minus=3	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=8.413e-03	junction_possible_overlap_registers=140	key=CP028101__1137798__1__CP028101__1137831__1__9____150__150__0__0	max_left=137	max_left_minus=137	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=63	max_min_right_minus=63	max_min_right_plus=0	max_pos_hash_score=280	max_right=63	max_right_minus=63	max_right_plus=0	neg_log10_pos_hash_p_value=26.4	new_junction_coverage=0.01	new_junction_read_count=3	polymorphism_frequency=8.413e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.80	side_1_overlap=9	side_1_possible_overlap_registers=149	side_1_read_count=378	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.79	side_2_overlap=0	side_2_possible_overlap_registers=140	side_2_read_count=352	side_2_redundant=0	total_non_overlap_reads=3
JC	147	.	CP028101	1137798	1	CP028101	1508924	1	0	alignment_overlap=9	coverage_minus=3	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=9.476e-03	junction_possible_overlap_registers=140	key=CP028101__1137798__1__CP028101__1508915__1__9____150__150__0__0	max_left=137	max_left_minus=137	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=63	max_min_right_minus=63	max_min_right_plus=0	max_pos_hash_score=280	max_right=63	max_right_minus=63	max_right_plus=0	neg_log10_pos_hash_p_value=26.4	new_junction_coverage=0.01	new_junction_read_count=3	polymorphism_frequency=9.476e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.80	side_1_overlap=9	side_1_possible_overlap_registers=149	side_1_read_count=378	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.61	side_2_overlap=0	side_2_possible_overlap_registers=140	side_2_read_count=272	side_2_redundant=0	total_non_overlap_reads=3
JC	148	.	CP028101	1142001	1	CP028101	1142029	1	0	alignment_overlap=9	coverage_minus=5	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=1.815e-02	junction_possible_overlap_registers=140	key=CP028101__1142001__1__CP028101__1142020__1__9____150__150__0__0	max_left=130	max_left_minus=130	max_left_plus=66	max_min_left=66	max_min_left_minus=63	max_min_left_plus=66	max_min_right=34	max_min_right_minus=34	max_min_right_plus=0	max_pos_hash_score=280	max_right=134	max_right_minus=120	max_right_plus=134	neg_log10_pos_hash_p_value=24.0	new_junction_coverage=0.02	new_junction_read_count=7	polymorphism_frequency=1.815e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.83	side_1_overlap=9	side_1_possible_overlap_registers=149	side_1_read_count=394	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.87	side_2_overlap=0	side_2_possible_overlap_registers=140	side_2_read_count=387	side_2_redundant=0	total_non_overlap_reads=7
JC	149	.	CP028101	1142009	-1	CP028101	1142019	-1	0	alignment_overlap=9	coverage_minus=0	coverage_plus=3	flanking_left=150	flanking_right=150	frequency=7.775e-03	junction_possible_overlap_registers=140	key=CP028101__1142009__-1__CP028101__1142028__-1__9____150__150__0__0	max_left=92	max_left_minus=0	max_left_plus=92	max_min_left=32	max_min_left_minus=0	max_min_left_plus=32	max_min_right=56	max_min_right_minus=0	max_min_right_plus=56	max_pos_hash_score=280	max_right=105	max_right_minus=0	max_right_plus=105	neg_log10_pos_hash_p_value=26.4	new_junction_coverage=0.01	new_junction_read_count=3	polymorphism_frequency=7.775e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.85	side_1_overlap=9	side_1_possible_overlap_registers=149	side_1_read_count=402	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.87	side_2_overlap=0	side_2_possible_overlap_registers=140	side_2_read_count=388	side_2_redundant=0	total_non_overlap_reads=3
JC	150	.	CP028101	1149007	1	CP028101	1149033	1	0	alignment_overlap=11	coverage_minus=5	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=1.045e-02	junction_possible_overlap_registers=138	key=CP028101__1149007__1__CP028101__1149022__1__11____150__150__0__0	max_left=122	max_left_minus=122	max_left_plus=0	max_min_left=52	max_min_left_minus=52	max_min_left_plus=0	max_min_right=55	max_min_right_minus=55	max_min_right_plus=0	max_pos_hash_score=276	max_right=128	max_right_minus=128	max_right_plus=0	neg_log10_pos_hash_p_value=25.4	new_junction_coverage=0.01	new_junction_read_count=5	polymorphism_frequency=1.045e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.08	side_1_overlap=11	side_1_possible_overlap_registers=149	side_1_read_count=515	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.07	side_2_overlap=0	side_2_possible_overlap_registers=138	side_2_read_count=470	side_2_redundant=0	total_non_overlap_reads=5
JC	151	.	CP028101	1159570	-1	CP028101	1159574	-1	0	alignment_overlap=9	coverage_minus=0	coverage_plus=7	flanking_left=150	flanking_right=150	frequency=1.649e-02	junction_possible_overlap_registers=140	key=CP028101__1159570__-1__CP028101__1159583__-1__9____150__150__0__0	max_left=123	max_left_minus=0	max_left_plus=123	max_min_left=61	max_min_left_minus=0	max_min_left_plus=61	max_min_right=69	max_min_right_minus=0	max_min_right_plus=69	max_pos_hash_score=280	max_right=82	max_right_minus=0	max_right_plus=82	neg_log10_pos_hash_p_value=24.0	new_junction_coverage=0.02	new_junction_read_count=7	polymorphism_frequency=1.649e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=9	side_1_possible_overlap_registers=149	side_1_read_count=446	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.93	side_2_overlap=0	side_2_possible_overlap_registers=140	side_2_read_count=416	side_2_redundant=0	total_non_overlap_reads=7
JC	152	.	CP028101	1163314	-1	CP028101	1163338	-1	0	alignment_overlap=4	coverage_minus=3	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=9.600e-03	junction_possible_overlap_registers=145	key=CP028101__1163314__-1__CP028101__1163342__-1__4____150__150__0__0	max_left=104	max_left_minus=104	max_left_plus=62	max_min_left=62	max_min_left_minus=33	max_min_left_plus=62	max_min_right=42	max_min_right_minus=42	max_min_right_plus=0	max_pos_hash_score=290	max_right=118	max_right_minus=118	max_right_plus=84	neg_log10_pos_hash_p_value=26.8	new_junction_coverage=0.01	new_junction_read_count=5	polymorphism_frequency=9.600e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.05	side_1_overlap=4	side_1_possible_overlap_registers=149	side_1_read_count=498	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.18	side_2_overlap=0	side_2_possible_overlap_registers=145	side_2_read_count=547	side_2_redundant=0	total_non_overlap_reads=5
JC	153	.	CP028101	1171421	1	CP028101	1171452	1	0	alignment_overlap=11	coverage_minus=9	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=2.530e-02	junction_possible_overlap_registers=138	key=CP028101__1171421__1__CP028101__1171441__1__11____150__150__0__0	max_left=88	max_left_minus=88	max_left_plus=0	max_min_left=48	max_min_left_minus=48	max_min_left_plus=0	max_min_right=63	max_min_right_minus=63	max_min_right_plus=0	max_pos_hash_score=276	max_right=120	max_right_minus=120	max_right_plus=0	neg_log10_pos_hash_p_value=23.9	new_junction_coverage=0.02	new_junction_read_count=9	polymorphism_frequency=2.530e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=11	side_1_possible_overlap_registers=149	side_1_read_count=386	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.76	side_2_overlap=0	side_2_possible_overlap_registers=138	side_2_read_count=336	side_2_redundant=0	total_non_overlap_reads=9
JC	154	.	CP028101	1177763	1	CP028101	1177785	1	0	alignment_overlap=8	coverage_minus=5	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=1.242e-02	junction_possible_overlap_registers=141	key=CP028101__1177763__1__CP028101__1177777__1__8____150__150__0__0	max_left=92	max_left_minus=92	max_left_plus=0	max_min_left=43	max_min_left_minus=43	max_min_left_plus=0	max_min_right=50	max_min_right_minus=50	max_min_right_plus=0	max_pos_hash_score=282	max_right=137	max_right_minus=137	max_right_plus=0	neg_log10_pos_hash_p_value=26.5	new_junction_coverage=0.01	new_junction_read_count=5	polymorphism_frequency=1.242e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.86	side_1_overlap=8	side_1_possible_overlap_registers=149	side_1_read_count=410	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.91	side_2_overlap=0	side_2_possible_overlap_registers=141	side_2_read_count=407	side_2_redundant=0	total_non_overlap_reads=5
JC	155	.	CP028101	1193674	1	CP028101	1999484	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=3.000e-01	junction_possible_overlap_registers=149	key=CP028101__1193674__1__CP028101__1999484__-1__0____150__150__1__0	max_left=144	max_left_minus=144	max_left_plus=112	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=40	max_min_right_minus=6	max_min_right_plus=40	max_pos_hash_score=298	max_right=40	max_right_minus=6	max_right_plus=40	neg_log10_pos_hash_p_value=27.1	new_junction_coverage=0.01	new_junction_read_count=3	polymorphism_frequency=3.000e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.01	side_2_overlap=0	side_2_possible_overlap_registers=149	side_2_read_count=7	side_2_redundant=0	total_non_overlap_reads=3
JC	156	.	CP028101	1193940	-1	CP028101	1999222	1	0	alignment_overlap=10	coverage_minus=3	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=1.011e-02	junction_possible_overlap_registers=139	key=CP028101__1193950__-1__CP028101__1999222__1__10____150__150__1__0	max_left=133	max_left_minus=133	max_left_plus=0	max_min_left=67	max_min_left_minus=67	max_min_left_plus=0	max_min_right=3	max_min_right_minus=3	max_min_right_plus=0	max_pos_hash_score=278	max_right=98	max_right_minus=98	max_right_plus=0	neg_log10_pos_hash_p_value=26.4	new_junction_coverage=0.01	new_junction_read_count=3	polymorphism_frequency=1.011e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.66	side_2_overlap=10	side_2_possible_overlap_registers=149	side_2_read_count=315	side_2_redundant=0	total_non_overlap_reads=3
JC	157	.	CP028101	1194639	-1	CP028101	1194625	-1	0	alignment_overlap=14	coverage_minus=2	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=6.187e-03	junction_possible_overlap_registers=135	key=CP028101__1194639__-1__CP028101__1194639__-1__14____150__150__0__0	max_left=45	max_left_minus=45	max_left_plus=13	max_min_left=45	max_min_left_minus=45	max_min_left_plus=13	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=270	max_right=125	max_right_minus=96	max_right_plus=125	neg_log10_pos_hash_p_value=26.1	new_junction_coverage=0.01	new_junction_read_count=3	polymorphism_frequency=6.187e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.10	side_1_overlap=14	side_1_possible_overlap_registers=149	side_1_read_count=524	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.14	side_2_overlap=0	side_2_possible_overlap_registers=135	side_2_read_count=489	side_2_redundant=0	total_non_overlap_reads=3
JC	158	.	CP028101	1197526	-1	CP028101	1197529	-1	0	alignment_overlap=11	coverage_minus=0	coverage_plus=6	flanking_left=150	flanking_right=150	frequency=1.681e-02	junction_possible_overlap_registers=138	key=CP028101__1197526__-1__CP028101__1197540__-1__11____150__150__0__0	max_left=124	max_left_minus=0	max_left_plus=124	max_min_left=59	max_min_left_minus=0	max_min_left_plus=59	max_min_right=51	max_min_right_minus=0	max_min_right_plus=51	max_pos_hash_score=276	max_right=80	max_right_minus=0	max_right_plus=80	neg_log10_pos_hash_p_value=25.4	new_junction_coverage=0.01	new_junction_read_count=6	polymorphism_frequency=1.681e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.80	side_1_overlap=11	side_1_possible_overlap_registers=149	side_1_read_count=379	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.80	side_2_overlap=0	side_2_possible_overlap_registers=138	side_2_read_count=351	side_2_redundant=0	total_non_overlap_reads=6
JC	159	.	CP028101	1232587	1	CP028101	1232624	1	0	alignment_overlap=6	coverage_minus=2	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=6.968e-03	junction_possible_overlap_registers=143	key=CP028101__1232587__1__CP028101__1232618__1__6____150__150__0__0	max_left=88	max_left_minus=88	max_left_plus=75	max_min_left=62	max_min_left_minus=62	max_min_left_plus=0	max_min_right=69	max_min_right_minus=56	max_min_right_plus=69	max_pos_hash_score=286	max_right=82	max_right_minus=82	max_right_plus=69	neg_log10_pos_hash_p_value=26.7	new_junction_coverage=0.01	new_junction_read_count=3	polymorphism_frequency=6.968e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=6	side_1_possible_overlap_registers=149	side_1_read_count=446	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=143	side_2_read_count=427	side_2_redundant=0	total_non_overlap_reads=3
JC	160	.	CP028101	1287965	-1	CP028101	1287968	-1	0	alignment_overlap=8	coverage_minus=0	coverage_plus=6	flanking_left=150	flanking_right=150	frequency=1.416e-02	junction_possible_overlap_registers=141	key=CP028101__1287965__-1__CP028101__1287976__-1__8____150__150__0__0	max_left=135	max_left_minus=0	max_left_plus=135	max_min_left=58	max_min_left_minus=0	max_min_left_plus=58	max_min_right=7	max_min_right_minus=0	max_min_right_plus=7	max_pos_hash_score=282	max_right=105	max_right_minus=0	max_right_plus=105	neg_log10_pos_hash_p_value=26.5	new_junction_coverage=0.01	new_junction_read_count=6	polymorphism_frequency=1.416e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.92	side_1_overlap=8	side_1_possible_overlap_registers=149	side_1_read_count=438	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=141	side_2_read_count=421	side_2_redundant=0	total_non_overlap_reads=6
JC	161	.	CP028101	1290473	1	CP028101	1290503	1	0	alignment_overlap=13	coverage_minus=9	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=2.538e-02	junction_possible_overlap_registers=136	key=CP028101__1290473__1__CP028101__1290490__1__13____150__150__0__0	max_left=133	max_left_minus=133	max_left_plus=0	max_min_left=54	max_min_left_minus=54	max_min_left_plus=0	max_min_right=64	max_min_right_minus=64	max_min_right_plus=0	max_pos_hash_score=272	max_right=103	max_right_minus=103	max_right_plus=0	neg_log10_pos_hash_p_value=23.7	new_junction_coverage=0.02	new_junction_read_count=9	polymorphism_frequency=2.538e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.74	side_1_overlap=13	side_1_possible_overlap_registers=149	side_1_read_count=353	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.85	side_2_overlap=0	side_2_possible_overlap_registers=136	side_2_read_count=369	side_2_redundant=0	total_non_overlap_reads=9
JC	162	.	CP028101	1353311	-1	CP028101	1353324	-1	0	alignment_overlap=12	coverage_minus=0	coverage_plus=7	flanking_left=150	flanking_right=150	frequency=1.680e-02	junction_possible_overlap_registers=137	key=CP028101__1353311__-1__CP028101__1353336__-1__12____150__150__0__0	max_left=97	max_left_minus=0	max_left_plus=97	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=63	max_min_right_minus=0	max_min_right_plus=63	max_pos_hash_score=274	max_right=63	max_right_minus=0	max_right_plus=63	neg_log10_pos_hash_p_value=26.2	new_junction_coverage=0.02	new_junction_read_count=7	polymorphism_frequency=1.680e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.96	side_1_overlap=12	side_1_possible_overlap_registers=149	side_1_read_count=454	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=137	side_2_read_count=402	side_2_redundant=0	total_non_overlap_reads=7
JC	163	.	CP028101	1376772	-1	CP028101	1376778	-1	0	alignment_overlap=8	coverage_minus=0	coverage_plus=4	flanking_left=150	flanking_right=150	frequency=8.432e-03	junction_possible_overlap_registers=141	key=CP028101__1376772__-1__CP028101__1376786__-1__8____150__150__0__0	max_left=110	max_left_minus=0	max_left_plus=110	max_min_left=12	max_min_left_minus=0	max_min_left_plus=12	max_min_right=43	max_min_right_minus=0	max_min_right_plus=43	max_pos_hash_score=282	max_right=130	max_right_minus=0	max_right_plus=130	neg_log10_pos_hash_p_value=25.6	new_junction_coverage=0.01	new_junction_read_count=4	polymorphism_frequency=8.432e-03	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.03	side_1_overlap=8	side_1_possible_overlap_registers=149	side_1_read_count=488	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.07	side_2_overlap=0	side_2_possible_overlap_registers=141	side_2_read_count=479	side_2_redundant=0	total_non_overlap_reads=4
JC	164	.	CP028101	1382740	-1	CP028101	1382746	-1	0	alignment_overlap=9	coverage_minus=1	coverage_plus=4	flanking_left=150	flanking_right=150	frequency=1.389e-02	junction_possible_overlap_registers=140	key=CP028101__1382740__-1__CP028101__1382755__-1__9____150__150__0__0	max_left=135	max_left_minus=45	max_left_plus=135	max_min_left=45	max_min_left_minus=45	max_min_left_plus=42	max_min_right=36	max_min_right_minus=0	max_min_right_plus=36	max_pos_hash_score=280	max_right=99	max_right_minus=96	max_right_plus=99	neg_log10_pos_hash_p_value=24.8	new_junction_coverage=0.01	new_junction_read_count=5	polymorphism_frequency=1.389e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.80	side_1_overlap=9	side_1_possible_overlap_registers=149	side_1_read_count=379	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.79	side_2_overlap=0	side_2_possible_overlap_registers=140	side_2_read_count=354	side_2_redundant=0	total_non_overlap_reads=5
JC	165	.	CP028101	1392935	-1	CP028101	1392972	-1	0	alignment_overlap=7	coverage_minus=0	coverage_plus=3	flanking_left=150	flanking_right=150	frequency=5.877e-03	junction_possible_overlap_registers=142	key=CP028101__1392935__-1__CP028101__1392979__-1__7____150__150__0__0	max_left=104	max_left_minus=0	max_left_plus=104	max_min_left=1	max_min_left_minus=0	max_min_left_plus=1	max_min_right=56	max_min_right_minus=0	max_min_right_plus=56	max_pos_hash_score=284	max_right=141	max_right_minus=0	max_right_plus=141	neg_log10_pos_hash_p_value=26.6	new_junction_coverage=0.01	new_junction_read_count=3	polymorphism_frequency=5.877e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.12	side_1_overlap=7	side_1_possible_overlap_registers=149	side_1_read_count=533	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.12	side_2_overlap=0	side_2_possible_overlap_registers=142	side_2_read_count=507	side_2_redundant=0	total_non_overlap_reads=3
JC	166	.	CP028101	1419219	1	CP028101	1419247	1	0	alignment_overlap=13	coverage_minus=4	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=1.095e-02	junction_possible_overlap_registers=136	key=CP028101__1419219__1__CP028101__1419234__1__13____150__150__0__0	max_left=84	max_left_minus=84	max_left_plus=0	max_min_left=61	max_min_left_minus=61	max_min_left_plus=0	max_min_right=53	max_min_right_minus=53	max_min_right_plus=0	max_pos_hash_score=272	max_right=129	max_right_minus=129	max_right_plus=0	neg_log10_pos_hash_p_value=25.3	new_junction_coverage=0.01	new_junction_read_count=4	polymorphism_frequency=1.095e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.85	side_1_overlap=13	side_1_possible_overlap_registers=149	side_1_read_count=404	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.82	side_2_overlap=0	side_2_possible_overlap_registers=136	side_2_read_count=354	side_2_redundant=0	total_non_overlap_reads=4
JC	167	.	CP028101	1421199	-1	CP028101	1421179	-1	0	alignment_overlap=20	coverage_minus=2	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=9.346e-03	junction_possible_overlap_registers=129	key=CP028101__1421199__-1__CP028101__1421199__-1__20____150__150__0__0	max_left=127	max_left_minus=75	max_left_plus=127	max_min_left=63	max_min_left_minus=63	max_min_left_plus=0	max_min_right=55	max_min_right_minus=55	max_min_right_plus=3	max_pos_hash_score=258	max_right=67	max_right_minus=67	max_right_plus=3	neg_log10_pos_hash_p_value=25.6	new_junction_coverage=0.01	new_junction_read_count=3	polymorphism_frequency=9.346e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.77	side_1_overlap=20	side_1_possible_overlap_registers=149	side_1_read_count=365	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.78	side_2_overlap=0	side_2_possible_overlap_registers=129	side_2_read_count=320	side_2_redundant=0	total_non_overlap_reads=3
JC	168	.	CP028101	1449984	1	CP028101	1450026	1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=NA	junction_possible_overlap_registers=140	key=CP028101__1449984__1__CP028101__1450017__1__9____150__150__1__1	max_left=72	max_left_minus=72	max_left_plus=33	max_min_left=39	max_min_left_minus=39	max_min_left_plus=33	max_min_right=69	max_min_right_minus=69	max_min_right_plus=0	max_pos_hash_score=280	max_right=102	max_right_minus=102	max_right_plus=102	neg_log10_pos_hash_p_value=26.4	new_junction_coverage=0.01	new_junction_read_count=3	polymorphism_frequency=NA	pos_hash_score=3	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=9	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	169	.	CP028101	1469695	-1	CP028101	1469698	-1	0	alignment_overlap=7	coverage_minus=0	coverage_plus=3	flanking_left=150	flanking_right=150	frequency=7.552e-03	junction_possible_overlap_registers=142	key=CP028101__1469695__-1__CP028101__1469705__-1__7____150__150__0__0	max_left=73	max_left_minus=0	max_left_plus=73	max_min_left=63	max_min_left_minus=0	max_min_left_plus=63	max_min_right=71	max_min_right_minus=0	max_min_right_plus=71	max_pos_hash_score=284	max_right=80	max_right_minus=0	max_right_plus=80	neg_log10_pos_hash_p_value=26.6	new_junction_coverage=0.01	new_junction_read_count=3	polymorphism_frequency=7.552e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.87	side_1_overlap=7	side_1_possible_overlap_registers=149	side_1_read_count=415	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.87	side_2_overlap=0	side_2_possible_overlap_registers=142	side_2_read_count=393	side_2_redundant=0	total_non_overlap_reads=3
JC	170	.	CP028101	1469747	1	CP028101	1469774	1	0	alignment_overlap=10	coverage_minus=3	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=9.440e-03	junction_possible_overlap_registers=139	key=CP028101__1469747__1__CP028101__1469764__1__10____150__150__0__0	max_left=72	max_left_minus=72	max_left_plus=0	max_min_left=47	max_min_left_minus=47	max_min_left_plus=0	max_min_right=68	max_min_right_minus=68	max_min_right_plus=0	max_pos_hash_score=278	max_right=97	max_right_minus=97	max_right_plus=0	neg_log10_pos_hash_p_value=26.4	new_junction_coverage=0.01	new_junction_read_count=3	polymorphism_frequency=9.440e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.73	side_1_overlap=10	side_1_possible_overlap_registers=149	side_1_read_count=349	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.69	side_2_overlap=0	side_2_possible_overlap_registers=139	side_2_read_count=304	side_2_redundant=0	total_non_overlap_reads=3
JC	171	.	CP028101	1497697	1	CP028101	1497721	1	0	alignment_overlap=9	coverage_minus=3	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=7.605e-03	junction_possible_overlap_registers=140	key=CP028101__1497697__1__CP028101__1497712__1__9____150__150__0__0	max_left=128	max_left_minus=128	max_left_plus=0	max_min_left=64	max_min_left_minus=64	max_min_left_plus=0	max_min_right=13	max_min_right_minus=13	max_min_right_plus=0	max_pos_hash_score=280	max_right=81	max_right_minus=81	max_right_plus=0	neg_log10_pos_hash_p_value=26.4	new_junction_coverage=0.01	new_junction_read_count=3	polymorphism_frequency=7.605e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.87	side_1_overlap=9	side_1_possible_overlap_registers=149	side_1_read_count=415	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.88	side_2_overlap=0	side_2_possible_overlap_registers=140	side_2_read_count=393	side_2_redundant=0	total_non_overlap_reads=3
JC	172	.	CP028101	1508758	-1	CP028101	1508762	-1	0	alignment_overlap=15	coverage_minus=0	coverage_plus=11	flanking_left=150	flanking_right=150	frequency=3.723e-02	junction_possible_overlap_registers=134	key=CP028101__1508758__-1__CP028101__1508777__-1__15____150__150__0__0	max_left=119	max_left_minus=0	max_left_plus=119	max_min_left=58	max_min_left_minus=0	max_min_left_plus=58	max_min_right=42	max_min_right_minus=0	max_min_right_plus=42	max_pos_hash_score=268	max_right=123	max_right_minus=0	max_right_plus=123	neg_log10_pos_hash_p_value=23.6	new_junction_coverage=0.03	new_junction_read_count=11	polymorphism_frequency=3.723e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.67	side_1_overlap=15	side_1_possible_overlap_registers=149	side_1_read_count=319	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.66	side_2_overlap=0	side_2_possible_overlap_registers=134	side_2_read_count=282	side_2_redundant=0	total_non_overlap_reads=11
JC	173	.	CP028101	1532134	1	CP028101	1532159	1	0	alignment_overlap=11	coverage_minus=2	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=1.195e-02	junction_possible_overlap_registers=138	key=CP028101__1532134__1__CP028101__1532148__1__11____150__150__0__0	max_left=106	max_left_minus=106	max_left_plus=101	max_min_left=34	max_min_left_minus=34	max_min_left_plus=15	max_min_right=38	max_min_right_minus=30	max_min_right_plus=38	max_pos_hash_score=276	max_right=124	max_right_minus=105	max_right_plus=124	neg_log10_pos_hash_p_value=25.4	new_junction_coverage=0.01	new_junction_read_count=4	polymorphism_frequency=1.195e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.73	side_1_overlap=11	side_1_possible_overlap_registers=149	side_1_read_count=349	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.77	side_2_overlap=0	side_2_possible_overlap_registers=138	side_2_read_count=338	side_2_redundant=0	total_non_overlap_reads=4
JC	174	.	CP028101	1538081	-1	CP028101	1538083	-1	0	alignment_overlap=7	coverage_minus=1	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=6.959e-03	junction_possible_overlap_registers=142	key=CP028101__1538081__-1__CP028101__1538090__-1__7____150__150__0__0	max_left=113	max_left_minus=99	max_left_plus=113	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=66	max_min_right_minus=44	max_min_right_plus=66	max_pos_hash_score=284	max_right=66	max_right_minus=44	max_right_plus=66	neg_log10_pos_hash_p_value=26.6	new_junction_coverage=0.01	new_junction_read_count=3	polymorphism_frequency=6.959e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.93	side_1_overlap=7	side_1_possible_overlap_registers=149	side_1_read_count=442	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.96	side_2_overlap=0	side_2_possible_overlap_registers=142	side_2_read_count=435	side_2_redundant=0	total_non_overlap_reads=3
JC	175	.	CP028101	1558499	1	CP028101	1558521	1	0	alignment_overlap=9	coverage_minus=3	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=6.616e-03	junction_possible_overlap_registers=140	key=CP028101__1558499__1__CP028101__1558512__1__9____150__150__0__0	max_left=38	max_left_minus=38	max_left_plus=0	max_min_left=38	max_min_left_minus=38	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=280	max_right=122	max_right_minus=122	max_right_plus=0	neg_log10_pos_hash_p_value=26.4	new_junction_coverage=0.01	new_junction_read_count=3	polymorphism_frequency=6.616e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.01	side_1_overlap=9	side_1_possible_overlap_registers=149	side_1_read_count=481	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.01	side_2_overlap=0	side_2_possible_overlap_registers=140	side_2_read_count=449	side_2_redundant=0	total_non_overlap_reads=3
JC	176	.	CP028101	1561803	1	CP028101	1561828	1	0	alignment_overlap=12	coverage_minus=8	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=2.058e-02	junction_possible_overlap_registers=137	key=CP028101__1561803__1__CP028101__1561816__1__12____150__150__0__0	max_left=128	max_left_minus=128	max_left_plus=0	max_min_left=54	max_min_left_minus=54	max_min_left_plus=0	max_min_right=56	max_min_right_minus=56	max_min_right_plus=0	max_pos_hash_score=274	max_right=125	max_right_minus=125	max_right_plus=0	neg_log10_pos_hash_p_value=25.3	new_junction_coverage=0.02	new_junction_read_count=8	polymorphism_frequency=2.058e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.85	side_1_overlap=12	side_1_possible_overlap_registers=149	side_1_read_count=403	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.89	side_2_overlap=0	side_2_possible_overlap_registers=137	side_2_read_count=391	side_2_redundant=0	total_non_overlap_reads=8
JC	177	.	CP028101	1600471	-1	CP028101	1600475	-1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=5	flanking_left=150	flanking_right=150	frequency=1.449e-02	junction_possible_overlap_registers=139	key=CP028101__1600471__-1__CP028101__1600485__-1__10____150__150__0__0	max_left=123	max_left_minus=100	max_left_plus=123	max_min_left=50	max_min_left_minus=0	max_min_left_plus=50	max_min_right=40	max_min_right_minus=40	max_min_right_plus=17	max_pos_hash_score=278	max_right=114	max_right_minus=40	max_right_plus=114	neg_log10_pos_hash_p_value=24.7	new_junction_coverage=0.01	new_junction_read_count=6	polymorphism_frequency=1.449e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.93	side_1_overlap=10	side_1_possible_overlap_registers=149	side_1_read_count=443	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.91	side_2_overlap=0	side_2_possible_overlap_registers=139	side_2_read_count=403	side_2_redundant=0	total_non_overlap_reads=6
JC	178	.	CP028101	1640318	-1	CP028101	1640334	-1	0	alignment_overlap=16	coverage_minus=0	coverage_plus=6	flanking_left=150	flanking_right=150	frequency=1.411e-02	junction_possible_overlap_registers=133	key=CP028101__1640318__-1__CP028101__1640350__-1__16____150__150__0__0	max_left=106	max_left_minus=0	max_left_plus=106	max_min_left=53	max_min_left_minus=0	max_min_left_plus=53	max_min_right=33	max_min_right_minus=0	max_min_right_plus=33	max_pos_hash_score=266	max_right=101	max_right_minus=0	max_right_plus=101	neg_log10_pos_hash_p_value=25.0	new_junction_coverage=0.01	new_junction_read_count=6	polymorphism_frequency=1.411e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.01	side_1_overlap=16	side_1_possible_overlap_registers=149	side_1_read_count=479	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.97	side_2_overlap=0	side_2_possible_overlap_registers=133	side_2_read_count=411	side_2_redundant=0	total_non_overlap_reads=6
JC	179	.	CP028101	1705496	-1	CP028101	1705547	-1	0	alignment_overlap=6	coverage_minus=0	coverage_plus=4	flanking_left=150	flanking_right=150	frequency=1.231e-02	junction_possible_overlap_registers=143	key=CP028101__1705496__-1__CP028101__1705553__-1__6____150__150__0__0	max_left=83	max_left_minus=0	max_left_plus=83	max_min_left=46	max_min_left_minus=0	max_min_left_plus=46	max_min_right=68	max_min_right_minus=0	max_min_right_plus=68	max_pos_hash_score=286	max_right=98	max_right_minus=0	max_right_plus=98	neg_log10_pos_hash_p_value=26.7	new_junction_coverage=0.01	new_junction_read_count=4	polymorphism_frequency=1.231e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.73	side_1_overlap=6	side_1_possible_overlap_registers=149	side_1_read_count=347	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.68	side_2_overlap=0	side_2_possible_overlap_registers=143	side_2_read_count=309	side_2_redundant=0	total_non_overlap_reads=4
JC	180	.	CP028101	1731461	1	CP028101	1731686	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=1.133e-02	junction_possible_overlap_registers=137	key=CP028101__1731461__1__CP028101__1731674__1__12____150__150__0__0	max_left=79	max_left_minus=79	max_left_plus=49	max_min_left=49	max_min_left_minus=0	max_min_left_plus=49	max_min_right=59	max_min_right_minus=59	max_min_right_plus=0	max_pos_hash_score=274	max_right=129	max_right_minus=59	max_right_plus=129	neg_log10_pos_hash_p_value=26.2	new_junction_coverage=0.01	new_junction_read_count=4	polymorphism_frequency=1.133e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.73	side_1_overlap=12	side_1_possible_overlap_registers=149	side_1_read_count=346	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.87	side_2_overlap=0	side_2_possible_overlap_registers=137	side_2_read_count=380	side_2_redundant=0	total_non_overlap_reads=4
JC	181	.	CP028101	1772520	1	CP028101	1772543	1	0	alignment_overlap=8	coverage_minus=3	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=7.758e-03	junction_possible_overlap_registers=141	key=CP028101__1772520__1__CP028101__1772535__1__8____150__150__0__0	max_left=96	max_left_minus=96	max_left_plus=0	max_min_left=23	max_min_left_minus=23	max_min_left_plus=0	max_min_right=47	max_min_right_minus=47	max_min_right_plus=0	max_pos_hash_score=282	max_right=119	max_right_minus=119	max_right_plus=0	neg_log10_pos_hash_p_value=26.5	new_junction_coverage=0.01	new_junction_read_count=3	polymorphism_frequency=7.758e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.85	side_1_overlap=8	side_1_possible_overlap_registers=149	side_1_read_count=403	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.86	side_2_overlap=0	side_2_possible_overlap_registers=141	side_2_read_count=386	side_2_redundant=0	total_non_overlap_reads=3
JC	182	.	CP028101	1798963	1	CP028101	1799009	1	0	alignment_overlap=6	coverage_minus=5	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=1.528e-02	junction_possible_overlap_registers=143	key=CP028101__1798963__1__CP028101__1799003__1__6____150__150__0__0	max_left=139	max_left_minus=139	max_left_plus=21	max_min_left=45	max_min_left_minus=45	max_min_left_plus=21	max_min_right=17	max_min_right_minus=17	max_min_right_plus=0	max_pos_hash_score=286	max_right=119	max_right_minus=102	max_right_plus=119	neg_log10_pos_hash_p_value=25.0	new_junction_coverage=0.01	new_junction_read_count=6	polymorphism_frequency=1.528e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.82	side_1_overlap=6	side_1_possible_overlap_registers=149	side_1_read_count=388	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.88	side_2_overlap=0	side_2_possible_overlap_registers=143	side_2_read_count=401	side_2_redundant=0	total_non_overlap_reads=6
JC	183	.	CP028101	1831520	-1	CP028101	1831525	-1	0	alignment_overlap=11	coverage_minus=0	coverage_plus=4	flanking_left=150	flanking_right=150	frequency=1.040e-02	junction_possible_overlap_registers=138	key=CP028101__1831520__-1__CP028101__1831536__-1__11____150__150__0__0	max_left=123	max_left_minus=0	max_left_plus=123	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=63	max_min_right_minus=0	max_min_right_plus=63	max_pos_hash_score=276	max_right=63	max_right_minus=0	max_right_plus=63	neg_log10_pos_hash_p_value=25.4	new_junction_coverage=0.01	new_junction_read_count=4	polymorphism_frequency=1.040e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.87	side_1_overlap=11	side_1_possible_overlap_registers=149	side_1_read_count=412	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.86	side_2_overlap=0	side_2_possible_overlap_registers=138	side_2_read_count=380	side_2_redundant=0	total_non_overlap_reads=4
JC	184	.	CP028101	1834413	1	CP028101	1834439	1	0	alignment_overlap=11	coverage_minus=2	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=7.444e-03	junction_possible_overlap_registers=138	key=CP028101__1834413__1__CP028101__1834428__1__11____150__150__0__0	max_left=107	max_left_minus=107	max_left_plus=50	max_min_left=50	max_min_left_minus=45	max_min_left_plus=50	max_min_right=32	max_min_right_minus=32	max_min_right_plus=0	max_pos_hash_score=276	max_right=94	max_right_minus=94	max_right_plus=89	neg_log10_pos_hash_p_value=26.3	new_junction_coverage=0.01	new_junction_read_count=3	polymorphism_frequency=7.444e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.91	side_1_overlap=11	side_1_possible_overlap_registers=149	side_1_read_count=433	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.91	side_2_overlap=0	side_2_possible_overlap_registers=138	side_2_read_count=399	side_2_redundant=0	total_non_overlap_reads=3
JC	185	.	CP028101	1899590	1	CP028101	1899615	1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=9.957e-03	junction_possible_overlap_registers=140	key=CP028101__1899590__1__CP028101__1899606__1__9____150__150__0__0	max_left=117	max_left_minus=117	max_left_plus=86	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=55	max_min_right_minus=51	max_min_right_plus=55	max_pos_hash_score=280	max_right=55	max_right_minus=51	max_right_plus=55	neg_log10_pos_hash_p_value=26.4	new_junction_coverage=0.01	new_junction_read_count=3	polymorphism_frequency=9.957e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.68	side_1_overlap=9	side_1_possible_overlap_registers=149	side_1_read_count=321	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.66	side_2_overlap=0	side_2_possible_overlap_registers=140	side_2_read_count=295	side_2_redundant=0	total_non_overlap_reads=3
JC	186	.	CP028101	1919393	1	CP028101	1919422	1	0	alignment_overlap=11	coverage_minus=4	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=1.019e-02	junction_possible_overlap_registers=138	key=CP028101__1919393__1__CP028101__1919411__1__11____150__150__0__0	max_left=73	max_left_minus=73	max_left_plus=0	max_min_left=51	max_min_left_minus=51	max_min_left_plus=0	max_min_right=64	max_min_right_minus=64	max_min_right_plus=0	max_pos_hash_score=276	max_right=104	max_right_minus=104	max_right_plus=0	neg_log10_pos_hash_p_value=26.3	new_junction_coverage=0.01	new_junction_read_count=4	polymorphism_frequency=1.019e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.86	side_1_overlap=11	side_1_possible_overlap_registers=149	side_1_read_count=410	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.90	side_2_overlap=0	side_2_possible_overlap_registers=138	side_2_read_count=397	side_2_redundant=0	total_non_overlap_reads=4
JC	187	.	CP028101	1969119	1	CP028101	1969155	1	0	alignment_overlap=36	coverage_minus=2	coverage_plus=3	flanking_left=150	flanking_right=150	frequency=1.675e-02	junction_possible_overlap_registers=113	key=CP028101__1969119__1__CP028101__1969119__1__36____150__150__0__0	max_left=92	max_left_minus=92	max_left_plus=81	max_min_left=46	max_min_left_minus=46	max_min_left_plus=22	max_min_right=46	max_min_right_minus=22	max_min_right_plus=46	max_pos_hash_score=226	max_right=92	max_right_minus=68	max_right_plus=92	neg_log10_pos_hash_p_value=22.4	new_junction_coverage=0.01	new_junction_read_count=5	polymorphism_frequency=1.675e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.80	side_1_overlap=36	side_1_possible_overlap_registers=149	side_1_read_count=381	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.83	side_2_overlap=0	side_2_possible_overlap_registers=113	side_2_read_count=298	side_2_redundant=0	total_non_overlap_reads=5
JC	188	.	CP028101	1990753	-1	CP028101	1990776	-1	0	alignment_overlap=12	coverage_minus=1	coverage_plus=7	flanking_left=150	flanking_right=150	frequency=2.164e-02	junction_possible_overlap_registers=137	key=CP028101__1990753__-1__CP028101__1990788__-1__12____150__150__0__0	max_left=135	max_left_minus=135	max_left_plus=106	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=36	max_min_right_minus=1	max_min_right_plus=36	max_pos_hash_score=274	max_right=36	max_right_minus=1	max_right_plus=36	neg_log10_pos_hash_p_value=25.3	new_junction_coverage=0.02	new_junction_read_count=8	polymorphism_frequency=2.164e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.83	side_1_overlap=12	side_1_possible_overlap_registers=149	side_1_read_count=393	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.83	side_2_overlap=0	side_2_possible_overlap_registers=137	side_2_read_count=362	side_2_redundant=0	total_non_overlap_reads=8
JC	189	.	CP028101	1993525	1	CP028101	1993549	1	0	alignment_overlap=10	coverage_minus=7	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=1.881e-02	junction_possible_overlap_registers=139	key=CP028101__1993525__1__CP028101__1993539__1__10____150__150__0__0	max_left=117	max_left_minus=117	max_left_plus=0	max_min_left=46	max_min_left_minus=46	max_min_left_plus=0	max_min_right=55	max_min_right_minus=55	max_min_right_plus=0	max_pos_hash_score=278	max_right=112	max_right_minus=112	max_right_plus=0	neg_log10_pos_hash_p_value=24.0	new_junction_coverage=0.02	new_junction_read_count=7	polymorphism_frequency=1.881e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=10	side_1_possible_overlap_registers=149	side_1_read_count=400	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=139	side_2_read_count=357	side_2_redundant=0	total_non_overlap_reads=7
JC	190	.	CP028101	1993557	1	CP028101	1993575	1	0	alignment_overlap=7	coverage_minus=3	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=8.295e-03	junction_possible_overlap_registers=142	key=CP028101__1993557__1__CP028101__1993568__1__7____150__150__0__0	max_left=120	max_left_minus=120	max_left_plus=0	max_min_left=56	max_min_left_minus=56	max_min_left_plus=0	max_min_right=64	max_min_right_minus=64	max_min_right_plus=0	max_pos_hash_score=284	max_right=87	max_right_minus=87	max_right_plus=0	neg_log10_pos_hash_p_value=26.6	new_junction_coverage=0.01	new_junction_read_count=3	polymorphism_frequency=8.295e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.79	side_1_overlap=7	side_1_possible_overlap_registers=149	side_1_read_count=377	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.79	side_2_overlap=0	side_2_possible_overlap_registers=142	side_2_read_count=358	side_2_redundant=0	total_non_overlap_reads=3
JC	191	.	CP028101	1996804	1	CP028101	1996848	1	0	alignment_overlap=13	coverage_minus=3	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=1.061e-02	junction_possible_overlap_registers=136	key=CP028101__1996804__1__CP028101__1996835__1__13____150__150__0__0	max_left=88	max_left_minus=88	max_left_plus=61	max_min_left=61	max_min_left_minus=0	max_min_left_plus=61	max_min_right=58	max_min_right_minus=58	max_min_right_plus=0	max_pos_hash_score=272	max_right=76	max_right_minus=58	max_right_plus=76	neg_log10_pos_hash_p_value=26.1	new_junction_coverage=0.01	new_junction_read_count=4	polymorphism_frequency=1.061e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.87	side_1_overlap=13	side_1_possible_overlap_registers=149	side_1_read_count=412	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.85	side_2_overlap=0	side_2_possible_overlap_registers=136	side_2_read_count=370	side_2_redundant=0	total_non_overlap_reads=4
JC	192	.	CP028101	1996816	-1	CP028101	1996834	-1	0	alignment_overlap=13	coverage_minus=0	coverage_plus=4	flanking_left=150	flanking_right=150	frequency=1.090e-02	junction_possible_overlap_registers=136	key=CP028101__1996816__-1__CP028101__1996847__-1__13____150__150__0__0	max_left=134	max_left_minus=0	max_left_plus=134	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=52	max_min_right_minus=0	max_min_right_plus=52	max_pos_hash_score=272	max_right=52	max_right_minus=0	max_right_plus=52	neg_log10_pos_hash_p_value=25.3	new_junction_coverage=0.01	new_junction_read_count=4	polymorphism_frequency=1.090e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.82	side_1_overlap=13	side_1_possible_overlap_registers=149	side_1_read_count=390	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.85	side_2_overlap=0	side_2_possible_overlap_registers=136	side_2_read_count=370	side_2_redundant=0	total_non_overlap_reads=4
JC	193	.	CP028101	2016572	1	CP028101	2016596	1	0	alignment_overlap=1	coverage_minus=3	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=148	key=CP028101__2016571__1__CP028101__2016596__1__1____150__150__1__0	max_left=93	max_left_minus=93	max_left_plus=0	max_min_left=66	max_min_left_minus=66	max_min_left_plus=0	max_min_right=67	max_min_right_minus=67	max_min_right_plus=0	max_pos_hash_score=296	max_right=83	max_right_minus=83	max_right_plus=0	neg_log10_pos_hash_p_value=27.0	new_junction_coverage=0.01	new_junction_read_count=3	polymorphism_frequency=1.000e+00	pos_hash_score=3	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=1	side_2_possible_overlap_registers=149	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=3
JC	194	.	CP028101	2030648	1	CP028101	2030674	1	0	alignment_overlap=12	coverage_minus=7	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=1.992e-02	junction_possible_overlap_registers=137	key=CP028101__2030648__1__CP028101__2030662__1__12____150__150__0__0	max_left=121	max_left_minus=121	max_left_plus=0	max_min_left=45	max_min_left_minus=45	max_min_left_plus=0	max_min_right=59	max_min_right_minus=59	max_min_right_plus=0	max_pos_hash_score=274	max_right=125	max_right_minus=125	max_right_plus=0	neg_log10_pos_hash_p_value=24.5	new_junction_coverage=0.02	new_junction_read_count=7	polymorphism_frequency=1.992e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=12	side_1_possible_overlap_registers=149	side_1_read_count=373	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.79	side_2_overlap=0	side_2_possible_overlap_registers=137	side_2_read_count=346	side_2_redundant=0	total_non_overlap_reads=7
JC	195	.	CP028101	2056000	1	CP028101	2056002	-1	0	alignment_overlap=2	coverage_minus=6	coverage_plus=7	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=147	key=CP028101__2056000__1__CP028101__2056004__-1__2____150__150__0__1	max_left=146	max_left_minus=146	max_left_plus=98	max_min_left=4	max_min_left_minus=4	max_min_left_plus=4	max_min_right=51	max_min_right_minus=2	max_min_right_plus=51	max_pos_hash_score=294	max_right=144	max_right_minus=144	max_right_plus=144	neg_log10_pos_hash_p_value=25.3	new_junction_coverage=0.05	new_junction_read_count=23	polymorphism_frequency=9.210e-01	pos_hash_score=5	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=149	side_1_read_count=2	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=13
JC	196	.	CP028101	2060542	1	CP028101	2060554	-1	0	alignment_overlap=1	coverage_minus=295	coverage_plus=228	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=148	key=CP028101__2060542__1__CP028101__2060555__-1__1____150__150__0__0	max_left=148	max_left_minus=148	max_left_plus=146	max_min_left=72	max_min_left_minus=70	max_min_left_plus=72	max_min_right=74	max_min_right_minus=74	max_min_right_plus=74	max_pos_hash_score=296	max_right=148	max_right_minus=148	max_right_plus=145	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=1.12	new_junction_read_count=528	polymorphism_frequency=9.339e-01	pos_hash_score=177	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.08	side_1_overlap=1	side_1_possible_overlap_registers=149	side_1_read_count=38	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.08	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=37	side_2_redundant=0	total_non_overlap_reads=523
JC	197	.	CP028101	2061831	-1	CP028101	2061837	-1	0	alignment_overlap=13	coverage_minus=1	coverage_plus=5	flanking_left=150	flanking_right=150	frequency=1.494e-02	junction_possible_overlap_registers=136	key=CP028101__2061831__-1__CP028101__2061850__-1__13____150__150__0__0	max_left=131	max_left_minus=77	max_left_plus=131	max_min_left=66	max_min_left_minus=0	max_min_left_plus=66	max_min_right=60	max_min_right_minus=60	max_min_right_plus=26	max_pos_hash_score=272	max_right=71	max_right_minus=60	max_right_plus=71	neg_log10_pos_hash_p_value=23.7	new_junction_coverage=0.01	new_junction_read_count=6	polymorphism_frequency=1.494e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.91	side_1_overlap=13	side_1_possible_overlap_registers=149	side_1_read_count=432	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=136	side_2_read_count=397	side_2_redundant=0	total_non_overlap_reads=6
JC	198	.	CP028101	2062138	-1	CP028101	2062158	-1	0	alignment_overlap=7	coverage_minus=0	coverage_plus=4	flanking_left=150	flanking_right=150	frequency=9.157e-03	junction_possible_overlap_registers=142	key=CP028101__2062138__-1__CP028101__2062165__-1__7____150__150__0__0	max_left=87	max_left_minus=0	max_left_plus=87	max_min_left=46	max_min_left_minus=0	max_min_left_plus=46	max_min_right=64	max_min_right_minus=0	max_min_right_plus=64	max_pos_hash_score=284	max_right=97	max_right_minus=0	max_right_plus=97	neg_log10_pos_hash_p_value=26.6	new_junction_coverage=0.01	new_junction_read_count=4	polymorphism_frequency=9.157e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.96	side_1_overlap=7	side_1_possible_overlap_registers=149	side_1_read_count=455	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.95	side_2_overlap=0	side_2_possible_overlap_registers=142	side_2_read_count=432	side_2_redundant=0	total_non_overlap_reads=4
JC	199	.	CP028101	2067928	1	CP028101	2067968	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=3	flanking_left=150	flanking_right=150	frequency=1.314e-02	junction_possible_overlap_registers=137	key=CP028101__2067928__1__CP028101__2067956__1__12____150__150__0__0	max_left=57	max_left_minus=57	max_left_plus=34	max_min_left=57	max_min_left_minus=57	max_min_left_plus=34	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=274	max_right=104	max_right_minus=102	max_right_plus=104	neg_log10_pos_hash_p_value=26.2	new_junction_coverage=0.01	new_junction_read_count=5	polymorphism_frequency=1.314e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.80	side_1_overlap=12	side_1_possible_overlap_registers=149	side_1_read_count=381	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=137	side_2_read_count=401	side_2_redundant=0	total_non_overlap_reads=5
JC	200	.	CP028101	2088786	1	CP028101	2088804	1	0	alignment_overlap=8	coverage_minus=4	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=1.138e-02	junction_possible_overlap_registers=141	key=CP028101__2088786__1__CP028101__2088796__1__8____150__150__0__0	max_left=71	max_left_minus=71	max_left_plus=4	max_min_left=68	max_min_left_minus=68	max_min_left_plus=4	max_min_right=71	max_min_right_minus=71	max_min_right_plus=0	max_pos_hash_score=282	max_right=138	max_right_minus=119	max_right_plus=138	neg_log10_pos_hash_p_value=24.9	new_junction_coverage=0.01	new_junction_read_count=5	polymorphism_frequency=1.138e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.99	side_1_overlap=8	side_1_possible_overlap_registers=149	side_1_read_count=469	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.95	side_2_overlap=0	side_2_possible_overlap_registers=141	side_2_read_count=425	side_2_redundant=0	total_non_overlap_reads=5
JC	201	.	CP028101	2099891	-1	CP028101	2099898	-1	0	alignment_overlap=9	coverage_minus=0	coverage_plus=3	flanking_left=150	flanking_right=150	frequency=8.166e-03	junction_possible_overlap_registers=140	key=CP028101__2099891__-1__CP028101__2099907__-1__9____150__150__0__0	max_left=123	max_left_minus=0	max_left_plus=123	max_min_left=58	max_min_left_minus=0	max_min_left_plus=58	max_min_right=69	max_min_right_minus=0	max_min_right_plus=69	max_pos_hash_score=280	max_right=80	max_right_minus=0	max_right_plus=80	neg_log10_pos_hash_p_value=26.4	new_junction_coverage=0.01	new_junction_read_count=3	polymorphism_frequency=8.166e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=9	side_1_possible_overlap_registers=149	side_1_read_count=385	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.82	side_2_overlap=0	side_2_possible_overlap_registers=140	side_2_read_count=367	side_2_redundant=0	total_non_overlap_reads=3
JC	202	.	CP028101	2113349	-1	CP028101	2113352	-1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=8.043e-03	junction_possible_overlap_registers=137	key=CP028101__2113349__-1__CP028101__2113364__-1__12____150__150__0__0	max_left=124	max_left_minus=74	max_left_plus=124	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=69	max_min_right_minus=69	max_min_right_plus=14	max_pos_hash_score=274	max_right=69	max_right_minus=69	max_right_plus=14	neg_log10_pos_hash_p_value=26.2	new_junction_coverage=0.01	new_junction_read_count=3	polymorphism_frequency=8.043e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=12	side_1_possible_overlap_registers=149	side_1_read_count=398	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.86	side_2_overlap=0	side_2_possible_overlap_registers=137	side_2_read_count=374	side_2_redundant=0	total_non_overlap_reads=3
JC	203	.	CP028101	2119049	1	CP028101	2119067	1	0	alignment_overlap=7	coverage_minus=3	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=8.068e-03	junction_possible_overlap_registers=142	key=CP028101__2119049__1__CP028101__2119060__1__7____150__150__0__0	max_left=91	max_left_minus=91	max_left_plus=0	max_min_left=16	max_min_left_minus=16	max_min_left_plus=0	max_min_right=68	max_min_right_minus=68	max_min_right_plus=0	max_pos_hash_score=284	max_right=127	max_right_minus=127	max_right_plus=0	neg_log10_pos_hash_p_value=26.6	new_junction_coverage=0.01	new_junction_read_count=3	polymorphism_frequency=8.068e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.73	side_1_overlap=7	side_1_possible_overlap_registers=149	side_1_read_count=348	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.90	side_2_overlap=0	side_2_possible_overlap_registers=142	side_2_read_count=406	side_2_redundant=0	total_non_overlap_reads=3
JC	204	.	CP028101	2122483	1	CP028101	2122503	1	0	alignment_overlap=8	coverage_minus=5	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=1.318e-02	junction_possible_overlap_registers=141	key=CP028101__2122483__1__CP028101__2122495__1__8____150__150__0__0	max_left=75	max_left_minus=75	max_left_plus=8	max_min_left=35	max_min_left_minus=35	max_min_left_plus=8	max_min_right=67	max_min_right_minus=67	max_min_right_plus=0	max_pos_hash_score=282	max_right=134	max_right_minus=131	max_right_plus=134	neg_log10_pos_hash_p_value=25.6	new_junction_coverage=0.01	new_junction_read_count=6	polymorphism_frequency=1.318e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.95	side_1_overlap=8	side_1_possible_overlap_registers=149	side_1_read_count=452	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.05	side_2_overlap=0	side_2_possible_overlap_registers=141	side_2_read_count=471	side_2_redundant=0	total_non_overlap_reads=6
JC	205	.	CP028101	2130048	-1	CP028101	2130049	-1	0	alignment_overlap=11	coverage_minus=1	coverage_plus=3	flanking_left=150	flanking_right=150	frequency=1.026e-02	junction_possible_overlap_registers=138	key=CP028101__2130048__-1__CP028101__2130060__-1__11____150__150__0__0	max_left=98	max_left_minus=52	max_left_plus=98	max_min_left=52	max_min_left_minus=52	max_min_left_plus=40	max_min_right=41	max_min_right_minus=0	max_min_right_plus=41	max_pos_hash_score=276	max_right=108	max_right_minus=87	max_right_plus=108	neg_log10_pos_hash_p_value=25.4	new_junction_coverage=0.01	new_junction_read_count=4	polymorphism_frequency=1.026e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.86	side_1_overlap=11	side_1_possible_overlap_registers=149	side_1_read_count=410	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.89	side_2_overlap=0	side_2_possible_overlap_registers=138	side_2_read_count=392	side_2_redundant=0	total_non_overlap_reads=4
JC	206	.	CP028101	2160522	-1	CP028101	2160525	-1	0	alignment_overlap=11	coverage_minus=0	coverage_plus=3	flanking_left=150	flanking_right=150	frequency=7.085e-03	junction_possible_overlap_registers=138	key=CP028101__2160522__-1__CP028101__2160536__-1__11____150__150__0__0	max_left=105	max_left_minus=0	max_left_plus=105	max_min_left=62	max_min_left_minus=0	max_min_left_plus=62	max_min_right=57	max_min_right_minus=0	max_min_right_plus=57	max_pos_hash_score=276	max_right=77	max_right_minus=0	max_right_plus=77	neg_log10_pos_hash_p_value=26.3	new_junction_coverage=0.01	new_junction_read_count=3	polymorphism_frequency=7.085e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.97	side_1_overlap=11	side_1_possible_overlap_registers=149	side_1_read_count=463	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=138	side_2_read_count=412	side_2_redundant=0	total_non_overlap_reads=3
UN	207	.	CP028101	14355	15748
UN	208	.	CP028101	69301	69357
UN	209	.	CP028101	172751	172752
UN	210	.	CP028101	172754	174030
UN	211	.	CP028101	298805	305037
UN	212	.	CP028101	305439	306820
UN	213	.	CP028101	332310	336814
UN	214	.	CP028101	491649	494013
UN	215	.	CP028101	505725	508090
UN	216	.	CP028101	514422	514595
UN	217	.	CP028101	534771	536195
UN	218	.	CP028101	536674	539534
UN	219	.	CP028101	610690	611379
UN	220	.	CP028101	613622	618001
UN	221	.	CP028101	693925	694301
UN	222	.	CP028101	696516	697791
UN	223	.	CP028101	759664	761045
UN	224	.	CP028101	761627	767867
UN	225	.	CP028101	770991	771126
UN	226	.	CP028101	771938	773213
UN	227	.	CP028101	873332	875370
UN	228	.	CP028101	880781	880954
UN	229	.	CP028101	900571	901207
UN	230	.	CP028101	1001071	1002511
UN	231	.	CP028101	1040901	1042394
UN	232	.	CP028101	1079618	1084272
UN	233	.	CP028101	1138298	1138983
UN	234	.	CP028101	1166433	1167713
UN	235	.	CP028101	1192429	1193865
UN	236	.	CP028101	1261845	1262490
UN	237	.	CP028101	1450128	1451283
UN	238	.	CP028101	1451290	1451290
UN	239	.	CP028101	1509095	1510066
UN	240	.	CP028101	1999481	2000697
UN	241	.	CP028101	2015627	2016748
UN	242	.	CP028101	2051382	2056047
UN	243	.	CP028101	2100219	2100915
UN	244	.	CP028101	2117772	2118934
UN	245	.	CP028101	2124021	2124397