mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 3,547 | +A | coding (307/798 nt) | r1tp05 → | ORF5 |
| RA | 3,556 | +GT | coding (316/798 nt) | r1tp05 → | ORF5 |
| RA | 5,234 | 2 bp→GC | coding (325‑326/834 nt) | r1tp09 → | ORF9 |
| RA | 5,237 | C→G | L110V (CTT→GTT) | r1tp09 → | ORF9 |
| RA | 8,712 | (TGAATT)3→2 | coding (21‑26/396 nt) | r1tp14 → | ORF14 |
| RA | 9,972 | C→A | A59E (GCA→GAA) | r1tp18 → | ORF18 |
| RA | 13,763 | T→C | V122A (GTT→GCT) | r1tp24 → | ORF24 |
| RA | 23,480 | A→C | E213A (GAA→GCA) | r1tp40 → | ORF40 |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_004302 | 1 | 11 | 11 | NA [0] | [0] 2 | –/r1tp01 | –/Integrase |
| * | * | ÷ | NC_004302 | 33195 | 33350 | 156 | 2 [1] | [0] NA | [r1tp50] | [r1tp50] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_004302 | = 23379 | 27 (0.050) | 475 (0.810) | 19/148 | 0.2 | 91.4% | coding (537/642 nt) | r1tp40 | ORF40 |
| ? | NC_004302 | 24308 = | 62 (0.110) | intergenic (+198/‑21) | r1tp41/r1tp42 | ORF41/ORF42 | |||||