| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_004302 | = 23379 | 27 (0.050) | 475 (0.810) | 19/148 | 0.2 | 91.4% | coding (537/642 nt) | r1tp40 | ORF40 |
| ? | NC_004302 | 24308 = | 62 (0.110) | intergenic (+198/‑21) | r1tp41/r1tp42 | ORF41/ORF42 | |||||
Only 100 of 545 total aligned reads displayed.
CTAGTCTATATGGAAACATATAGCAGTTCATAAGAGAACGGTTATAGATTAACGACCTATGACGAATATAAACGTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCAAAAGCTGACTGGTCAAAAGTATGATA > NC_004302/24234‑24380 | ctagtctaTATGGAAACATATAGCAGTTCATAAGAGAACGGTTATAGATTAACGACCTATGACGAATATAAACGt > 1:14641498/1‑75 (MQ=255) aatagaaattcaaaatgcttatcaaggttttgcgaaacaaaactacacaatgcttgataacttgaaactgggtTa > 1:11051798‑M2/74‑75 (MQ=255) gaggtatGGAAACATATAGCAGTTCATAAGAGAACGGTTATAGATTAACGACCTATGACGAATATAAACGTactg > 1:12574281/5‑72 (MQ=255) aacgagaaaatggcttatcaaggttttgcgaaacaaaactacacaatgcttgataacttgaaactgggtTA‑tgg‑t > 1:14905709‑M2/70‑75 (MQ=255) tgtggataaatgcttatcaaggttttgcgaaacaaaactacacaatgcttgataacttgaaactgggtTA‑tgg‑tg > 1:4513128‑M2/69‑75 (MQ=255) gttttataaatgcttatcaaggttttgcgaaacaaaactacacaatgcttgataacttgaaactgggtTA‑tgg‑tg > 1:2590699‑M2/69‑75 (MQ=255) gcgtaataatgcttatcaaggttttgcgaaacaaaactacacaatgcttgataacttgaaactgggtTA‑tgg‑tgg > 1:15043531‑M2/68‑75 (MQ=255) taggcttatcaaggttttgcgaaacaaaactacacaatgcttgataacttgaaactgggtTA‑TGG‑TGGTACGaaa > 1:8861796‑M2/61‑75 (MQ=255) atatcataGCAGTTCATAAGAGAACGGTTATAGATTAACGACCTATGACGAATATAAACGTA‑TGG‑TGGTACGaaa > 1:15198254/6‑75 (MQ=255) cagccaaggttttgcgaaacaaaactacacaatgcttgataacttgaaactgggtTA‑TGG‑TGGTACGAAagaaga > 1:15880829‑M2/56‑75 (MQ=255) aagtataggttttgcaaaacaaaactacacaatgcttgataacttgaaactgggtTA‑TGG‑TGGTACGAAagaaga > 1:1278717‑M2/56‑75 (MQ=255) tgtatttCAT‑AGAGAACGGTTATAGATTAACGACCTATGACGAATATAAACGTA‑TGG‑TGGTACGAAAGAAGAAAt > 1:4700132/6‑75 (MQ=255) gttttactttgggaaacaaaactacacaatgcttgataacttgaaactgggtTA‑TGG‑TGGTACGAAAGAAGAAAt > 1:7491499‑M2/53‑75 (MQ=255) aatgggttttgcgaaaaaaactacacaatgcttgataacttgaaactgggtTA‑TGG‑TGGTACGAAAGAAGAAATg > 1:5392079‑M2/52‑75 (MQ=255) ttgtattgcgaaaaaaaaagtacacaatgcttgataacttgaaactgggtTA‑TGG‑TGGTACGAAAGAAGAAATGc > 1:3301257‑M2/51‑75 (MQ=255) caggttttgcgaaacaaaactacacaatgcttgataacttgaaactgggtTA‑TGG‑TGGTACGAAAGAAGAAATGc > 1:14391505‑M2/51‑75 (MQ=255) atgtgatgcgaaacaaaactacacaatgcttgataacttgaaactgggtTA‑TGG‑TGGTACGAAAGAAGAAATGCa > 1:4906530‑M2/50‑75 (MQ=255) tcataaaGAGAACGGTTATAGATTAACGACCTATGACGAATATAAACGTA‑TGG‑TGGTACGAAAGAAGAAATGCaa > 1:9850080/6‑75 (MQ=255) gtacctagaaacaaaactacacaaatgcttgataacttgaaactgggtTA‑TGG‑TGGTACGAAAGAAGAAATGCaa > 1:10961239‑M2/49‑75 (MQ=255) gggtcgcgaaacaaaactacacaatgcttgataacttgaaactgggtTA‑TGG‑TGGTACGAAAGAAGAAATGCAAc > 1:1673632‑M2/48‑75 (MQ=255) aatgcgaaacaaaactacacaatgcttgataacttgaaactgggtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGa > 1:2429688‑M2/46‑75 (MQ=255) aagagtaaaCGGTTATAGATTAACGACCTATGACGAATATAAACGTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGa > 1:17717996/8‑75 (MQ=255) tataggaacaaaactacacaatgcttgataacttgaaactgggtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGAc > 1:6838784‑M2/45‑75 (MQ=255) actctaaacaaaactacacaatgcttgataacttgaaactgggtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGAc > 1:14048888‑M2/45‑75 (MQ=255) tttagctggTTATAGATTAACGACCTATGACGAATATAAACGTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGActc > 1:10544257/8‑75 (MQ=255) taaaggaaaaactacacaatgcttgataacttgaaactgggtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGActc > 1:5224594‑M2/43‑75 (MQ=255) gggtgacaatactacacaatgcttgataacttgaaactgggtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGActc > 1:7788784‑M2/43‑75 (MQ=255) tggaaacaaaactacacatgcttgataacttgaaactgggtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGActc‑t > 1:16149049‑M2/42‑75 (MQ=255) gatgcGGTTATAGATTAACGACCTATGACGAATATAAACGTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑tt > 1:114104/5‑75 (MQ=255) cgagaaaaactacacaatgcttgataacttgaaactgggtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑tt > 1:10316299‑M2/41‑75 (MQ=255) aagtaggTTATAGATTAACGACCTATGACGAATATAAACGTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGActcaa > 1:12396164/6‑73 (MQ=255) gaggtatactatacaatgcttgataacttgaaactgggtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTg > 1:6761566‑M2/40‑75 (MQ=255) gaatctacacaatgcttgataacttgaaactgggtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTg > 1:7594225‑M2/36‑75 (MQ=255) agtactacacaatgcttgataacttgaaactgggtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTg > 1:15108383‑M2/36‑75 (MQ=255) ctcatacacaatgcttgataacttgaaactgggtTA‑TGG‑TGGTACGGAAGAAGAAATGCAACGACCC‑TTGACTGa > 1:3004165‑M2/35‑75 (MQ=255) aggagtcacaatgcttgataacttgaaactgggtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGa > 1:5638917‑M2/35‑75 (MQ=255) ggatacaatgcttgataacttgaaactgggtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGc > 1:1750894‑M2/32‑75 (MQ=255) catttgaatgcttgataacttgaaactgggtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGc > 1:3658164‑M2/32‑75 (MQ=255) gtatatatgcttgataacttgaaactgggtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATgca > 1:6135156‑M2/31‑74 (MQ=255) ttattcgtgatcacttgaaaactgggtTA‑TGG‑TGGTACGAAAGAAGAAATACAACGACTC‑TTGACTGATGCTCaa > 1:10202766‑M2/28‑75 (MQ=255) acacgacttgataacttgaaactgggtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCaa > 1:17041671‑M2/28‑75 (MQ=255) ggcaattgataacttgaaactgggtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCaaaa > 1:10810421‑M2/26‑75 (MQ=255) gatgcttgataacttgaaactgggtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTcaaat > 1:11214071‑M2/26‑74 (MQ=255) gactcatgataacttgaaactgggtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTcaaag > 1:7323631‑M2/26‑74 (MQ=255) cccggttgacaacttgaaactgggtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCaaaa > 1:13663351‑M2/26‑75 (MQ=255) tttgtttataacttgaaactgggtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCAAAAg > 1:15242875‑M2/25‑75 (MQ=255) tgtgtgatgacttgaaactgggtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCAAAAGc > 1:1068978‑M2/24‑75 (MQ=255) taagtattaacttgaaactgggtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCAAAAGc > 1:10920410‑M2/24‑75 (MQ=255) gaaggataacttgaaactgggtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCAAAAGCt > 1:2807581‑M2/23‑75 (MQ=255) aaatgggaacttgaaactgggtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCAAAAGCt > 1:15679756‑M2/23‑75 (MQ=255) aaggcaTGACGAATATAAACGTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCAAAAGCTg > 1:13007748/6‑75 (MQ=255) ttatacgACGATTATAAACGTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCAAAAGCTGa > 1:9227807/7‑75 (MQ=255) gtttATGACAAGTATAAACGTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCAAAAGCTGa > 1:7665529/4‑75 (MQ=255) gtcTATGACGAATATAAACGTA‑TGG‑TAGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCAAAAGCTGa > 1:704269/3‑75 (MQ=255) atgataacttgaaactgggtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCAAAAGCTGa > 1:4374123‑M2/21‑75 (MQ=255) tcttccttgaaactgggtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCAAAAGCTGACt > 1:13215118‑M2/19‑75 (MQ=255) tacgggAATATAAACGTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCAAAAGCTGACTgg > 1:13291562/6‑75 (MQ=255) gcccagaaactgggtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCAAAAGCTGACtggc > 1:11523052‑M2/16‑74 (MQ=255) tgtgagtactggttTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCAAAAGCTGACTGGTc > 1:9605459‑M2/15‑75 (MQ=255) gatatgtactgggtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCAAAAGCTGACTGGTc > 1:2027979‑M2/15‑75 (MQ=255) actgaaaactcggtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCAAAAGCTGACTGGTc > 1:808632‑M2/15‑75 (MQ=255) tcgaactctgggtTA‑TGG‑TGGTACGAAAGAAGAAAGGCAACGACTC‑TTGACTGATGCTCAAAAGCTGACTGGTCa > 1:14232294‑M2/14‑75 (MQ=255) tttagtttgggtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCAAAAGCTGACTGGTCaa > 1:8591950‑M2/13‑75 (MQ=255) tggcacttgggtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCAAAAGCTGACTGGTCaa > 1:3986488‑M2/13‑75 (MQ=255) tagagactgcgtTA‑TGA‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCAAAAGCTGACTGGTCaa > 1:15534865‑M2/13‑75 (MQ=255) taccaggtgggtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCAAAAGCTGACTGGTCaa > 1:11693504‑M2/13‑75 (MQ=255) gttacgctgggtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCAAAAGCTGACTGGTCaa > 1:16308460‑M2/13‑75 (MQ=255) ggtgtgttgggtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCAAAAGCTGACTGGTCaa > 1:8748847‑M2/13‑75 (MQ=255) gggcaggtgggtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCAAAAGCTGACTGGTCaa > 1:4206476‑M2/13‑75 (MQ=255) gatgggctgggtTA‑TGG‑TGGTACGAAAGAAGAAATGCAAAGACTC‑TTGACTGATGCTCAAAAGCTGACTGGTCaa > 1:9300388‑M2/13‑75 (MQ=255) gaggcggtgggtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCAAAAGCTGACTGGTCaa > 1:7181266‑M2/13‑75 (MQ=255) cttttactgggtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCAAAAGCTGACTGGTCaa > 1:16519510‑M2/13‑75 (MQ=255) ctcttggtgggtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCAAAAGCTGACTGGTCaa > 1:3446081‑M2/13‑75 (MQ=255) ctcgttgaaaCGTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCAAAAGCTGACTGGTCaa > 1:582762/8‑75 (MQ=255) caatttctgggtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCAAAAGCTGACTGGTCaa > 1:17344844‑M2/13‑75 (MQ=255) atctgtctgggtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCAAAAGCTGACTGGTCaa > 1:16039673‑M2/13‑75 (MQ=255) atcagcctgggtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTCTTTGACTGATGCTCAAAAGCTGACTGGTCa > 1:1765487‑M2/13‑75 (MQ=255) tttgctgggttTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCAAAAGCTGACTGGTCaaa > 1:6325803‑M2/12‑75 (MQ=255) gtaactggggtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCAAAAGCTGACTGGTCaaa > 1:4119699‑M2/12‑75 (MQ=255) ggtgctaAAAGTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCAAAAGCTGACTGGTCaaa > 1:17228913/6‑75 (MQ=255) gctaggtgggtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTTAAAAGCTGACTGGTCaaa > 1:6227352‑M2/12‑75 (MQ=255) gctaatggggtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCAAAAGCTGACTGGTCaaa > 1:1884340‑M2/12‑75 (MQ=255) atgggctgggtTA‑TGG‑TGGAACGAAAGAAGAAAAGCAACGACTC‑TTGACTGATGCTCAAAAGCTGACTGGTCaaa > 1:10409551‑M2/12‑75 (MQ=255) gcaataggtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCAAAAGCTGACTGGTCAAAAg > 1:10009926‑M2/10‑75 (MQ=255) gaatcggtTATTGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCAAAAGCTGACTGGTCAAAAg > 1:5962226‑M2/9‑75 (MQ=255) tgacccGTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCAAAAGCTGACTGGTCAAAAGTa > 1:11867955/6‑75 (MQ=255) tcctggtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCAAAAGCTGACTGGTCAAAAGTa > 1:12238641‑M2/8‑75 (MQ=255) actgagtTG‑TGG‑GGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCAAAAGCTGACTGGTCAAAAGTa > 1:17572443‑M2/8‑75 (MQ=255) tggggtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCAAAAGCTGACTGGTCAAAAGTAt > 1:5112586‑M2/7‑75 (MQ=255) atttgtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCAAAAGCTGACTGGTCAAAAGTAt > 1:9021360‑M2/7‑75 (MQ=255) gtagtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCAAAAGCTGACTGGTCAAAAGTATg > 1:2133561‑M2/6‑75 (MQ=255) aaggtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCAAAAGCTGACTGGTCAAAAGTATg > 1:13903664‑M2/6‑75 (MQ=255) aaagtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCAAAAGCTGACT‑GTCAAAAGTATGa > 1:4606097‑M2/6‑75 (MQ=255) tggtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCAAAAGCTGGctggtcaaaatcggaa > 1:824078‑M2/5‑69 (MQ=255) tggtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCAAAAGCTGACTGGTCAAAAGTATGa > 1:7978521‑M2/5‑75 (MQ=255) gtgtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCAAAAGCTGACTGGTCAAAAGTATGa > 1:4787231‑M2/5‑75 (MQ=255) gagtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCAAAAGCTGACTGGTCAAAAGTATGa > 1:8282639‑M2/5‑75 (MQ=255) ctgtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCAAAAGCTGACTGGTCAAAAGTATGa > 1:8959608‑M2/5‑75 (MQ=255) ggtTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCAAAAGCTGACTGGTCAAAAGTATGat > 1:11298192‑M2/4‑75 (MQ=255) gggTA‑TGGATGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCAAAAGCTGACTGGTCAAAAGTATGa > 1:3191881/3‑75 (MQ=255) | CTAGTCTATATGGAAACATATAGCAGTTCATAAGAGAACGGTTATAGATTAACGACCTATGACGAATATAAACGTA‑TGG‑TGGTACGAAAGAAGAAATGCAACGACTC‑TTGACTGATGCTCAAAAGCTGACTGGTCAAAAGTATGATA > NC_004302/24234‑24380 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |